RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1995
(211 letters)
>gnl|CDD|238858 cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like
subfamily of SGNH-hydrolases. Platelet-activating factor
(PAF) and PAF-AH are key players in inflammation and in
atherosclerosis. PAF-AH is a calcium independent
phospholipase A2 which exhibits strong substrate
specificity towards PAF, hydrolyzing an acetyl ester at
the sn-2 position. PAF-AH also degrades a family of
oxidized PAF-like phospholipids with short sn-2
residues. In addition, PAF and PAF-AH are associated
with neural migration and mammalian reproduction.
Length = 214
Score = 208 bits (532), Expect = 1e-68
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 7/211 (3%)
Query: 4 PCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQT--QIWHNLFEP 61
P P GD RW ++HE + AK+ EP++VFIGDS+ T ++W L+ P
Sbjct: 1 PAAAPTPVDDLDGDPRWMSRHERFVAEAKQKEPDVVFIGDSITQNWEFTGLEVWRELYAP 60
Query: 62 LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDS--AENIADGILELIR 119
LH L FGIGGD+ ++ LWR+++G LD + PKV+V+L+GTNN + AE IA+GIL ++
Sbjct: 61 LHALNFGIGGDRTQNVLWRLENGELDGVNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVE 120
Query: 120 LVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEI 179
++ K P A +++L LLPRG+ N L +N N++LA + P V + +K +
Sbjct: 121 EIREKLPNAKILLLGLLPRGQNPNPLRERNAQVNRLLAVRYDGL---PNVTFLDIDKGFV 177
Query: 180 ISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210
S IS D DYLHLT +GYRK ++
Sbjct: 178 QSDGTISHHDMPDYLHLTAAGYRKWADALHP 208
>gnl|CDD|222156 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family.
This family of presumed lipases and related enzymes are
similar to pfam00657.
Length = 174
Score = 69.5 bits (170), Expect = 6e-15
Identities = 29/178 (16%), Positives = 67/178 (37%), Gaps = 16/178 (8%)
Query: 39 VFIGDSLISFLTQT-------QIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSI-- 89
VF+GDS+ + L + ++ L + + G+ G L R++ +L+ +
Sbjct: 1 VFLGDSITAGLGASAGEGYAGRLAARLGAGVEVVNLGVSGATTADGLARLEAEVLELLAF 60
Query: 90 KPKVIVILVGTNNTEDSAENIADGILE-LIRLVQTKQPQADVVVLELLPRGKLINKLWTK 148
KP ++V+ +GTN+ + L +++ +P V+++ P +
Sbjct: 61 KPDLVVVALGTNDLGSGTDADLAAYEAALEAILRAARPAGPVLLVGPPPVLPEASPPLLN 120
Query: 149 NLAT--NQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKV 204
+ N+ L + V + + + D +H ++GY +
Sbjct: 121 DRLAALNEALRE----VAARYGVPFVDLAAALRDHEGWLPDLLTADGIHPNDAGYALI 174
>gnl|CDD|238866 cd01828, sialate_O-acetylesterase_like2,
sialate_O-acetylesterase_like subfamily of the
SGNH-hydrolases, a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 169
Score = 67.3 bits (165), Expect = 3e-14
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 20/173 (11%)
Query: 37 ELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVI 96
LVF+GDSL T+ W LF + GI GD L R+ + +++PK I I
Sbjct: 1 ALVFLGDSL----TEGGPWALLFPDVKVANRGISGDTTRGLLARLDE--DVALQPKAIFI 54
Query: 97 LVGTNNTE--DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQ 154
++G N+ S E+I ++ ++ P +VV +LP G+L + + N+
Sbjct: 55 MIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNR 114
Query: 155 IL---ADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDF-YDYLHLTESGYRK 203
L A + V + + D + +F D LHL GY
Sbjct: 115 QLAQLAQQ-------EGVTFLDLWA-VFTNADGDLKNEFTTDGLHLNAKGYAV 159
>gnl|CDD|238141 cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a
diverse family of lipases and esterases. The tertiary
fold of the enzyme is substantially different from that
of the alpha/beta hydrolase family and unique among all
known hydrolases; its active site closely resembles the
typical Ser-His-Asp(Glu) triad from other serine
hydrolases, but may lack the carboxlic acid.
Length = 187
Score = 64.0 bits (155), Expect = 8e-13
Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 19/190 (10%)
Query: 38 LVFIGDSL----------ISFLTQTQIWHNLFEPLH-CLAFGIGGDKVEHCLWRVQDGIL 86
++ IGDS+ + + P + G+ G L R+ +
Sbjct: 1 ILVIGDSITAGYGASSGSTFYSLLLYLLLLAGGPGVEVINLGVSGATTADALRRLGLRLA 60
Query: 87 DSI-KPKVIVILVGTN----NTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKL 141
KP +++I +GTN + S + + EL+ ++ + P A V+++ P
Sbjct: 61 LLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITPPPPPPR 120
Query: 142 INKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGY 201
L N+ + + P V L+ DE D +H +G+
Sbjct: 121 EGLLGRALPRYNEAIKAVAAENPAPSGVDLVDLAALL---GDEDKSLYSPDGIHPNPAGH 177
Query: 202 RKVFTPVYEK 211
+ + +
Sbjct: 178 KLIAEALASA 187
>gnl|CDD|238872 cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 191
Score = 45.7 bits (109), Expect = 2e-06
Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 26/136 (19%)
Query: 38 LVFIGDSLISFLTQTQIWHNLFEPLHCLAF----------GIGGDKVEHCLWRVQDGILD 87
+VFIG+S +T + E + G GD V R +L
Sbjct: 4 IVFIGNS----ITDRGGYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVLP 59
Query: 88 SIKPKVIVILVGTN------NTEDSAENIADGILELIRLVQTKQPQADVV-----VLELL 136
KP V+ I+ G N + E + LI ++ K+ +V E
Sbjct: 60 -AKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEAN 118
Query: 137 PRGKLINKLWTKNLAT 152
+ NLA
Sbjct: 119 EDPLPDGAEYNANLAA 134
>gnl|CDD|239946 cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase
superfamily, a diverse family of lipases and esterases.
The tertiary fold of the enzyme is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; its active site
closely resembles the Ser-His-Asp(Glu) triad from other
serine hydrolases, but may lack the carboxlic acid.
Length = 171
Score = 44.2 bits (105), Expect = 7e-06
Identities = 38/175 (21%), Positives = 66/175 (37%), Gaps = 25/175 (14%)
Query: 39 VFIGDSLISFLTQTQIWHNL---FEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIV 95
+F G S I W L PL + G GG + CL D ++ +P+ +V
Sbjct: 3 LFYGSSSIRL------WDTLADDLAPLPVVNRGFGGSTLADCLHYF-DRLVLPYQPRRVV 55
Query: 96 ILVGTNNTED--SAENIADGILELIRLVQTKQPQADVVVLELLP---RGKLINKLWTKNL 150
+ G N+ + E + EL+ ++ K P + ++ + P R L K
Sbjct: 56 LYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAIISIKPSPARWAL----RPKIR 111
Query: 151 ATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFY--DYLHLTESGYRK 203
N +L + P + I + D + + + D LHL ++GY
Sbjct: 112 RFNALLKELAET---RPNLTYIDVASPML-DADGKPRAELFQEDGLHLNDAGYAL 162
>gnl|CDD|238871 cd01833, XynB_like, SGNH_hydrolase subfamily, similar to
Ruminococcus flavefaciens XynB. Most likely a secreted
hydrolase with xylanase activity. SGNH hydrolases are a
diverse family of lipases and esterases. The tertiary
fold of the enzyme is substantially different from that
of the alpha/beta hydrolase family and unique among all
known hydrolases; its active site closely resembles the
Ser-His-Asp(Glu) triad found in other serine hydrolases.
Length = 157
Score = 38.4 bits (90), Expect = 8e-04
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 81 VQDGILDSI---KPKVIVILVGTN--NTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135
+ D + KP V+++ +GTN + D + LI ++ P ++V L
Sbjct: 28 IAAAAADWVLAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVATL 87
Query: 136 LPR--GKLINKLWTKNLATNQILADKLSPAPLGPKVHLI-QHNKDEIISKDEISQGDFYD 192
+P ++ N A ++AD + G V L+ + + D YD
Sbjct: 88 IPTTDASGNARIAEYNAAIPGVVADLRTA---GSPVVLVDMS---TGYTTAD----DLYD 137
Query: 193 YLHLTESGYRK 203
LH + GY+K
Sbjct: 138 GLHPNDQGYKK 148
>gnl|CDD|239945 cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase
superfamily, a diverse family of lipases and esterases.
The tertiary fold of the enzyme is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; its active site
closely resembles the Ser-His-Asp(Glu) triad from other
serine hydrolases, but may lack the carboxlic acid.
Length = 183
Score = 37.7 bits (88), Expect = 0.002
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 37 ELVFIGDSLISFL--TQTQIWHNL---FEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKP 91
+V +GDS+ W NL F + GI GD L R + ++ ++KP
Sbjct: 2 RVVCLGDSITYGYPVGPEASWVNLLAEFLGKEVINRGINGDTTSQMLVRFYEDVI-ALKP 60
Query: 92 KVIVILVGTNN--TEDSAENIADGILELI 118
V++I+ GTN+ S E I D I ++
Sbjct: 61 AVVIIMGGTNDIIVNTSLEMIKDNIRSMV 89
>gnl|CDD|238879 cd01841, NnaC_like, NnaC (CMP-NeuNAc synthetase) _like subfamily of
SGNH_hydrolases, a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles two of the three
components of typical Ser-His-Asp(Glu) triad from other
serine hydrolases. E. coli NnaC appears to be involved
in polysaccharide synthesis.
Length = 174
Score = 36.5 bits (85), Expect = 0.004
Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 15/172 (8%)
Query: 39 VFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILV 98
VFIGDSL + + GI G L ++ ++ P + + +
Sbjct: 4 VFIGDSLFEGWPLYEAEGKGKTVNNL---GIAGISSRQYLEHIEPQLIQK-NPSKVFLFL 59
Query: 99 GTN---NTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKN---LAT 152
GTN S + I ++I ++ + P + +L +LP + N
Sbjct: 60 GTNDIGKEVSSNQFIKW-YRDIIEQIREEFPNTKIYLLSVLPVLEEDEIKTRSNTRIQRL 118
Query: 153 NQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKV 204
N + +L+P + L DE + + D LH GY+K+
Sbjct: 119 NDAI-KELAPELGVTFIDLNDVLVDEFGNLKKEYT---TDGLHFNPKGYQKL 166
>gnl|CDD|216048 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase.
Length = 219
Score = 36.1 bits (83), Expect = 0.008
Identities = 39/217 (17%), Positives = 61/217 (28%), Gaps = 50/217 (23%)
Query: 38 LVFIGDS----------------LISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRV 81
+V GDS L LT N F + GI G + +
Sbjct: 1 IVAFGDSLTDGYGDGGGNGWGAGLADRLTSDVGL-NQFWGVDYFNRGISGRTSDSQALGL 59
Query: 82 QDGIL------DSIKPKVIVILVGTNNT---------EDSAENIADGILELIRLV----- 121
+L D P ++ I +GTN+ S D + LI L+
Sbjct: 60 LQELLRLVDVDDQFSPDLVTIFIGTNDLITKSTKSDQNVSVPEFIDNLRSLIDLLRSRNG 119
Query: 122 QTKQPQADVVVLELLPRGKLINKLWTKNLAT---------NQILADKLSPAPLGPKVHLI 172
V++ L P G + N L + +
Sbjct: 120 ARIIILITPVLINLPPLGASQKNVDAAGCLERLNEAVADYNSALRELAEELRKLKGADVP 179
Query: 173 QHNKDEIISKDEISQGD----FYDYLHLTESGYRKVF 205
+ I + Q F+D LH +E GY+ +
Sbjct: 180 YVDLYSIFQDLDGIQNPSSYLFWDGLHPSEKGYKAMA 216
>gnl|CDD|225353 COG2755, TesA, Lysophospholipase L1 and related esterases [Amino
acid transport and metabolism].
Length = 216
Score = 34.9 bits (80), Expect = 0.016
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 62 LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTN------NTEDSAENIADGIL 115
L GI GD L R+ + + P +++I++G N +A +
Sbjct: 49 NLVLNGGISGDTSAGGLQRLPALLKQHLPPDLVIIMLGGNDIGPLRGFSPNAAEFTKNLR 108
Query: 116 ELIRLVQTKQPQAD-----VVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVH 170
+LI+ ++ P A V+++ + P + + L+ V
Sbjct: 109 QLIQALRKANPLAGLTPIPVLLVGIAPPFIATDFPTYGA-DWFHAANEILAQLANELFVP 167
Query: 171 LIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYEK 211
L + D LH GY+ + + E
Sbjct: 168 LADLFDAGVDGGRLPELLTE-DGLHPNAKGYQALAEALAEV 207
>gnl|CDD|238877 cd01839, SGNH_arylesterase_like, SGNH_hydrolase subfamily, similar
to arylesterase (7-aminocephalosporanic
acid-deacetylating enzyme) of A. tumefaciens. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 208
Score = 31.5 bits (72), Expect = 0.21
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 91 PKVIVILVGTNNT----EDSAENIADGILELIRLVQTKQPQADVVVLELL 136
+++I++GTN+ SA IA G+ L+ +++T + + ++L
Sbjct: 80 LDLVIIMLGTNDLKSYFNLSAAEIAQGLGALVDIIRTAPIEPGMPAPKIL 129
>gnl|CDD|238874 cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and
similar esterases/lipases. FeeA and FeeB are part of a
biosynthetic gene cluster and may participate in the
biosynthesis of long-chain N-acyltyrosines by providing
saturated and unsaturated fatty acids, which it turn are
loaded onto the acyl carrier protein FeeL. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 191
Score = 30.7 bits (70), Expect = 0.41
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 90 KPKVIVILVGTNNT------EDSAENIADGILELIRLVQTKQPQADVVVLELLP 137
+ V VI +G N+ + +A EL+ ++ K P A VVV + P
Sbjct: 67 RFDVAVISIGVNDVTHLTSIARWRKQLA----ELVDALRAKFPGARVVVTAVPP 116
>gnl|CDD|215605 PLN03153, PLN03153, hypothetical protein; Provisional.
Length = 537
Score = 31.0 bits (70), Expect = 0.48
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 6 IVPQKNQVDLGDNRWY---------NQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWH 56
IV + ++ L D RW+ N L+K E+V++G S + H
Sbjct: 199 IVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSH 258
Query: 57 NLFEPLHCLAFGIGGDKVEH----CLWRVQDGILD 87
N+ AFG GG + + L R+ D LD
Sbjct: 259 NM-------AFGGGGIAISYPLAEALSRILDDCLD 286
>gnl|CDD|238876 cd01838, Isoamyl_acetate_hydrolase_like, Isoamyl-acetate
hydrolyzing esterase-like proteins. SGNH_hydrolase
subfamily similar to the Saccharomyces cerevisiae IAH1.
IAH1 may be the major esterase that hydrolyses isoamyl
acetate in sake mash. The SGNH-family of hydrolases is
a diverse family of lipases and esterases. The tertiary
fold of the enzyme is substantially different from that
of the alpha/beta hydrolase family and unique among all
known hydrolases; its active site closely resembles the
Ser-His-Asp(Glu) triad found in other serine hydrolases.
Length = 199
Score = 29.5 bits (67), Expect = 0.86
Identities = 28/195 (14%), Positives = 63/195 (32%), Gaps = 31/195 (15%)
Query: 38 LVFIGDSLI--SFLTQTQIWH----NLFEP-LHCLAFGIGGDKVEHCLWRVQDGIL--DS 88
+V GDS+ SF + +++ L + G G L + L
Sbjct: 2 IVLFGDSITQFSFDQGEFGFGAALADVYSRKLDVINRGFSGYNTRWALKVLPKIFLEEKL 61
Query: 89 IKPKVIVILVGTNNTEDSA----------ENIADGILELIRLVQTKQPQADVVVL----- 133
+P ++ I G N D+A + + + +++ +++ P+ V+++
Sbjct: 62 AQPDLVTIFFGAN---DAALPGQPQHVPLDEYKENLRKIVSHLKSLSPKTKVILITPPPV 118
Query: 134 ---ELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDF 190
+ + + A+ V +I + + +
Sbjct: 119 DEEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVIDLWT-AMQEEAGWLESLL 177
Query: 191 YDYLHLTESGYRKVF 205
D LH + GY +F
Sbjct: 178 TDGLHFSSKGYELLF 192
>gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotamases increase
the rate of protein folding by catalyzing the
interconversion of cis-proline and trans-proline.
Length = 114
Score = 28.4 bits (64), Expect = 1.2
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 87 DSIKPKVIVILVGTNNTEDSAENIADGILELIR 119
DS+K + I++ + A+ +AD I ++
Sbjct: 14 DSVKVRHILVAYAGAQRKAEAKALADSIYNALK 46
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
Validated.
Length = 466
Score = 29.3 bits (67), Expect = 1.3
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 13/40 (32%)
Query: 64 CLAFGIGGDKVEH-----CLWRVQDGILDSIKPKVIVILV 98
LAFGIG +VEH L + KPK + I V
Sbjct: 139 ALAFGIGTSEVEHVLATQTLLQK--------KPKTMKIEV 170
>gnl|CDD|227543 COG5218, YCG1, Chromosome condensation complex Condensin, subunit G
[Chromatin structure and dynamics / Cell division and
chromosome partitioning].
Length = 885
Score = 29.2 bits (65), Expect = 1.7
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 75 EHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAEN-IADGIL 115
E CL R+ D SI +++++ G + E S + + D I
Sbjct: 221 ERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIA 262
>gnl|CDD|235458 PRK05427, PRK05427, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 308
Score = 28.3 bits (64), Expect = 2.6
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 85 ILDSIKPKVIVILVGTNNTEDSAENIADG-ILELI---RL--VQTKQP 126
++ S+ +V VILV N + S ++I + ++ ++ RL +T P
Sbjct: 60 LITSVAGEVQVILVDHNEFQQSPDDIDEATVVGVVDHHRLGNFETSNP 107
>gnl|CDD|116052 pfam07431, DUF1512, Protein of unknown function (DUF1512). This
family consists of several archaeal proteins of around
370 residues in length. The function of this family is
unknown.
Length = 356
Score = 28.5 bits (64), Expect = 2.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 72 DKVEHCLWRVQDGILDSIKPKVIVILVGTNNT 103
VE L RV+D IL+ KP V++VG NT
Sbjct: 320 GAVEKALERVKDIILERTKPGDSVLVVGVGNT 351
>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional.
Length = 487
Score = 28.2 bits (63), Expect = 3.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 79 WRVQDGILDSIKPKVIVILVGTNNTEDSA 107
W V DG++D+ PKV I+V T D A
Sbjct: 184 WAVIDGVIDTDFPKVPEIIVFQAETSDVA 212
>gnl|CDD|153379 cd07367, CarBb, CarBb is the B subunit of the Class III Extradiol
ring-cleavage dioxygenase, 2-aminophenol
1,6-dioxygenase, which catalyzes the oxidization and
subsequent ring-opening of 2-aminophenyl-2,3-diol.
CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase
(CarB), which catalyzes the oxidization and subsequent
ring-opening of 2-aminophenyl-2,3-diol. It is a key
enzyme in the carbazole degradation pathway isolated
from bacterial strains with carbazole degradation
ability. The enzyme is a heterotetramer composed of two
A and two B subunits. CarB belongs to the class III
extradiol dioxygenase family, a group of enzymes which
use a non-heme Fe(II) to cleave aromatic rings between a
hydroxylated carbon and an adjacent non-hydroxylated
carbon. Although the enzyme was originally isolated as a
meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol
involved in carbazole degradation, it has also shown
high specificity for 2,3-dihydroxybiphenyl.
Length = 268
Score = 27.8 bits (62), Expect = 4.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 96 ILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVL 133
IL+ ED A + G+ E+ R V+ +P DV+V+
Sbjct: 13 ILMSPKGVEDQAARVVQGMAEIGRRVRESRP--DVLVV 48
>gnl|CDD|226532 COG4046, COG4046, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 368
Score = 27.8 bits (62), Expect = 4.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 72 DKVEHCLWRVQDGILDSIKPKVIVILVGTNNT 103
VE L RV+D IL++ P V++VG NT
Sbjct: 332 GAVEKALERVKDIILNNEAPGDSVLVVGVGNT 363
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 27.4 bits (61), Expect = 6.9
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 38 LVFIGDSLISFLTQTQIWHNLFEPLHCL-AFGIGGDKVEHCLWRVQDGILDSIKPKVIVI 96
+V + L S L + L L G + V G +P + V
Sbjct: 177 VVAVNALLASVLLKRATGGRLLLLGLLLVVLLAYGCALLGLAGSVPVG-----EPTLTVA 231
Query: 97 LVGTNNT------EDSAENIADGILELIRLVQTKQPQADVVVL 133
LV N D+ + G LE L + + D+VV
Sbjct: 232 LVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVW 274
>gnl|CDD|164955 PHA02560, FI, major tail sheath protein; Provisional.
Length = 388
Score = 27.0 bits (60), Expect = 7.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 66 AFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDS-AENIADGI 114
A G G K L R D I D KP +V+ V E + NI G+
Sbjct: 57 ALGKAGAK--GTLPRALDAIADQTKPPTVVVRVAEGADEAATTSNIIGGV 104
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
Provisional.
Length = 471
Score = 27.2 bits (61), Expect = 7.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 65 LAFGIGGDKVEHCL 78
LAFGIG +VEH L
Sbjct: 142 LAFGIGTSEVEHVL 155
>gnl|CDD|224378 COG1461, COG1461, Predicted kinase related to dihydroxyacetone
kinase [General function prediction only].
Length = 542
Score = 27.2 bits (61), Expect = 7.9
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 71 GDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILE 116
G+ +E L + + +LD +++ I G + TE+ AE + I E
Sbjct: 474 GEDLEDALKKTLEKLLDE-DSEIVTIYYGKDATEEEAEELEKKIEE 518
>gnl|CDD|223406 COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate
lyase [Amino acid transport and metabolism / Cell
envelope biogenesis, outer membrane].
Length = 299
Score = 26.8 bits (60), Expect = 8.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Query: 87 DSIKPKVIVIL-VGTNNTEDSAENI-------ADGIL 115
+++ +V VI VG+N+T ++ E ADGIL
Sbjct: 68 EAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGIL 104
>gnl|CDD|225010 COG2099, CobK, Precorrin-6x reductase [Coenzyme metabolism].
Length = 257
Score = 26.5 bits (59), Expect = 9.8
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 126 PQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGP------KVHLIQHNKDEI 179
V+ +LP ++ K + +I+A + GP K L Q+ D +
Sbjct: 147 DAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMR------GPFSEEDNKALLEQYRIDVV 200
Query: 180 ISKDEISQGDFY 191
++K+ G Y
Sbjct: 201 VTKNSGGAGGTY 212
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.417
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,698,695
Number of extensions: 993598
Number of successful extensions: 993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 39
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)