RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1995
(211 letters)
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma
subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus}
SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A
3dt9_A* 3dt6_A* 3dt8_A*
Length = 232
Score = 164 bits (417), Expect = 2e-51
Identities = 89/210 (42%), Positives = 125/210 (59%), Gaps = 3/210 (1%)
Query: 1 MANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFE 60
NP P Q GD +W + H + +K+ EPE+VFIGDSL+ + Q +IW LF
Sbjct: 4 DENPASKPTPVQDVQGDGKWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFS 63
Query: 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRL 120
PLH L FGIGGD +H LWR+++G L+ I+PK++V+ VGTNN +AE + GI +++L
Sbjct: 64 PLHALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQL 123
Query: 121 VQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEII 180
V +QPQA VVVL LLPRG+ N L KN N+++ L+ P+ H + + +
Sbjct: 124 VNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALA---GHPRAHFLDADPGFVH 180
Query: 181 SKDEISQGDFYDYLHLTESGYRKVFTPVYE 210
S IS D YDYLHL+ GY V ++
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHS 210
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit;
alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP:
c.23.10.3 PDB: 1vyh_A
Length = 229
Score = 161 bits (408), Expect = 4e-50
Identities = 92/210 (43%), Positives = 133/210 (63%), Gaps = 3/210 (1%)
Query: 1 MANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFE 60
+NP +P + GD+RW +QH + K+ EP+++F+GDS++ + Q +IW LF
Sbjct: 5 DSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFS 64
Query: 61 PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRL 120
PLH L FGIGGD H LWR+++G L++IKPKVIV+ VGTNN E++AE +A GI +++L
Sbjct: 65 PLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQL 124
Query: 121 VQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEII 180
+ T+QPQA ++VL LLPRG+ N L KN NQ+L L V L+ + +
Sbjct: 125 INTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPK---LANVQLLDTDGGFVH 181
Query: 181 SKDEISQGDFYDYLHLTESGYRKVFTPVYE 210
S IS D +D+LHLT GY K+ P++E
Sbjct: 182 SDGAISCHDMFDFLHLTGGGYAKICKPLHE 211
>2hsj_A Putative platelet activating factor; structr genomics, structural
genomics, PSI-2; HET: MSE; 1.50A {Streptococcus
pneumoniae} SCOP: c.23.10.3
Length = 214
Score = 119 bits (300), Expect = 6e-34
Identities = 37/216 (17%), Positives = 75/216 (34%), Gaps = 10/216 (4%)
Query: 2 ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEP 61
+N V L + L EP ++FIGDS++ + +
Sbjct: 1 SNAMAVQLLENWLLKEQEKIQTKYRHLNHISVVEPNILFIGDSIVEYY---PLQELFGTS 57
Query: 62 LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNN--TEDSAENIADGILELIR 119
+ GI G + L + D L I +L+GTN+ + + + +I+
Sbjct: 58 KTIVNRGIRGYQTGLLLENL-DAHLYGGAVDKIFLLIGTNDIGKDVPVNEALNNLEAIIQ 116
Query: 120 LVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQI---LADKLSP-APLGPKVHLIQHN 175
V P ++ +L +LP + + +N+ A +V +
Sbjct: 117 SVARDYPLTEIKLLSILPVNEREEYQQAVYIRSNEKIQNWNQAYQELASAYMQVEFVPVF 176
Query: 176 KDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYEK 211
++ + D LHL+ +GY+ + + +
Sbjct: 177 DCLTDQAGQLKKEYTTDGLHLSIAGYQALSKSLKDY 212
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo
structural genomics, joint center for structural
genomics; HET: MSE PG4; 1.93A {Parabacteroides
distasonis}
Length = 204
Score = 87.6 bits (217), Expect = 1e-21
Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 11/194 (5%)
Query: 17 DNRWYNQHEHQLQLAKESEP-ELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVE 75
W + P +VF+G+S+ F + + GI G
Sbjct: 3 KGDWAQFGRYAEANKTVKVPSNVVFMGNSITDGWWPA--DSTFFIRNNFVDRGISGQTTS 60
Query: 76 HCLWRVQDGILDSIKPKVIVILVGTNN-----TEDSAENIADGILELIRLVQTKQPQADV 130
L R + +++ +KPK +VIL G N+ + EN+ ++ + L K V
Sbjct: 61 EMLVRFRQDVIN-LKPKAVVILAGINDIAHNNGVIALENVFGNLVSMAELA--KANHIKV 117
Query: 131 VVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDF 190
+ +LP + + L + + + ++ ++ +
Sbjct: 118 IFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVDYHSAMKDERNGLPANLS 177
Query: 191 YDYLHLTESGYRKV 204
D +H T GY+ +
Sbjct: 178 KDGVHPTLEGYKIM 191
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium
thermocellum}
Length = 215
Score = 67.6 bits (165), Expect = 3e-14
Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 14/161 (8%)
Query: 50 TQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAEN 109
+Q +L + H G G + + + L++ P V+ + +G N+ +
Sbjct: 47 SQRSGPSSLPDKDH---EGHSGWTIPQIASNI-NNWLNTHNPDVVFLWIGGNDLLLNGNL 102
Query: 110 IADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKV 169
A G+ LI + T +P + V + P + I + N I+ K + G KV
Sbjct: 103 NATGLSNLIDQIFTVKPNVTLFVADYYPWPEAIKQY---NAVIPGIVQQKANA---GKKV 156
Query: 170 HLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210
+ ++ ++ + + +D LHL+E GY+K+ Y+
Sbjct: 157 YFVKLSEIQFDRNTD----ISWDGLHLSEIGYKKIANIWYK 193
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY
LP_3323, structural genomics, PSI-2, prote structure
initiative; 2.12A {Lactobacillus plantarum} SCOP:
c.23.10.9
Length = 232
Score = 61.8 bits (150), Expect = 5e-12
Identities = 29/206 (14%), Positives = 56/206 (27%), Gaps = 42/206 (20%)
Query: 38 LVFIGDSLI--SFLTQTQIWHNLFEPLHCLA---FGIGG----DKVEHCLWRVQDGILDS 88
++GDS+ + L L GI G + + R Q
Sbjct: 24 PAWLGDSITANNGLATVHYHDILAADWDVERSDNLGISGSTIGSRYDAMAVRYQAIPE-- 81
Query: 89 IKPKVIVILVGTN----------NTEDSAENIADGILELIRLVQTKQPQADVVVLELLPR 138
I + G N + ++ L+ +QT P + + +
Sbjct: 82 -DADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHI 140
Query: 139 G--------KLINKLWTKNLATNQI---LADKLSPAPLGPKVHLIQHNKDEIISKDEISQ 187
G + N L + + V + +D ++ +Q
Sbjct: 141 GSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADY-------GVPHLSLYRDAGMTFAIPAQ 193
Query: 188 GDFY--DYLHLTESGYRKVFTPVYEK 211
Y D LH +G+R + +
Sbjct: 194 AAIYSVDTLHPNNAGHRVIARKLQSF 219
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold,
trans; 2.49A {Streptomyces SP}
Length = 385
Score = 62.5 bits (151), Expect = 8e-12
Identities = 26/192 (13%), Positives = 62/192 (32%), Gaps = 25/192 (13%)
Query: 31 AKESEPELVFIGDSLISF---LTQTQIWHNLFEP-----LHCLAFGIGGDKVEHCLWRVQ 82
S+P + GDS+ + ++ W L L L+F G ++ R+
Sbjct: 181 DTSSKPHWIHYGDSICHGRGAASPSRTWLALAARAEGLDLQSLSFAADGSHLQPMFARL- 239
Query: 83 DGILDSIKPKVIVILVGTNN--TEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGK 140
+ + +I + VGT+N D + ++ +++++ + P +V+ +
Sbjct: 240 ---IRDLPADLISLRVGTSNFMDGDGFVDFPANLVGFVQIIRERHPLTPIVLGSSVYSPF 296
Query: 141 ---LINKLWTKNLATNQILAD--KLSPAPLGPKVHLIQHNKDEIISKDEISQG----DFY 191
L + + +L VH + + + + +
Sbjct: 297 WDELPADDKPTVADYREQVVKVAELLRKHGDQNVHYL--DGMRVWGPERGMELYLEKPDK 354
Query: 192 DYLHLTESGYRK 203
H G+
Sbjct: 355 YPTHPNAVGHEI 366
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center
for structural genomics, JCSG, protein structure INI
PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB:
1z8h_A
Length = 218
Score = 59.2 bits (143), Expect = 4e-11
Identities = 29/208 (13%), Positives = 67/208 (32%), Gaps = 23/208 (11%)
Query: 15 LGDNRWYNQHEHQLQLAKESEPELVFIGDSL---------ISFLTQ-TQIWHNLFEPLHC 64
+G ++ + H H + +++ + F+GDS + + + + +
Sbjct: 1 MGSDK-IHHHHHHMTKQSKTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTY 59
Query: 65 LAFGIGGDKVEHCLWRVQDGI---LDSIKPKVIVILVGTN----NTEDSAENIADGILEL 117
GI D R + L ++V G N +IA+ I
Sbjct: 60 YNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNT 119
Query: 118 IRLVQTKQPQADVVVLELLPRGKLINKLWT-KNLATNQILADKLSPAPLGPKVHLIQHNK 176
++ + V+++ P + + + + +Q LA + P + + +
Sbjct: 120 REILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLAL-VCQDLDVPYLDVFPLLE 178
Query: 177 DEIISKDEISQGDFYDYLHLTESGYRKV 204
+ E D +H GY +
Sbjct: 179 KPSVWLHEAKAN---DGVHPQAGGYTEF 203
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase;
1.60A {Saccharomyces cerevisiae}
Length = 240
Score = 53.4 bits (128), Expect = 6e-09
Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 27/197 (13%)
Query: 36 PELVFIGDSL--------------ISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRV 81
+ + GDS+ + + + + L G G L +
Sbjct: 4 EKFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKIL 63
Query: 82 QDGILDSIKPKVIVILVGTNN------TEDSAENIADGILELIRLVQTKQPQADVV---- 131
+ + + I +G N+ D I +++ L+++ + ++
Sbjct: 64 PEILKHESNIVMATIFLGANDACSAGPQSVPLPEFIDNIRQMVSLMKSYHIRPIIIGPGL 123
Query: 132 VLELLPRGKLINKLWTKNLATNQIL---ADKLSPAPLGPKVHLIQHNKDEIISKDEISQG 188
V + ++ TN+ +D L+ KV + NK + Q
Sbjct: 124 VDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVPFVALNKAFQQEGGDAWQQ 183
Query: 189 DFYDYLHLTESGYRKVF 205
D LH + GY+
Sbjct: 184 LLTDGLHFSGKGYKIFH 200
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for
structural genomics, MCSG, H; 1.50A {Alicyclobacillus
acidocaldarius subsp}
Length = 216
Score = 52.6 bits (126), Expect = 9e-09
Identities = 25/211 (11%), Positives = 60/211 (28%), Gaps = 48/211 (22%)
Query: 38 LVFIGDSL-----------ISFLTQTQIWHNLFE----------PLHCLAFGIGGDKVEH 76
LV +GDS+ + L + + + G G+ V
Sbjct: 11 LVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVAD 70
Query: 77 CLWRVQDGILDSIKPKVIVILVGTNNT------------EDSAENIADGILELIRLVQTK 124
R +D ++ +P + +++G N+ + D + L+ TK
Sbjct: 71 VARRWEDDVMAL-QPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVA--TTK 127
Query: 125 QPQADVVVLELLPRGKLINKLWTKNLAT-NQI---LADKLSPAPLGPKVHLI-QHNKDEI 179
++ +L + K + + +A V + + +
Sbjct: 128 PRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASE-------HVPFVDVQAEFDR 180
Query: 180 ISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210
+ + D +H +G+ +
Sbjct: 181 LLAHLNTWVLAPDRVHPYLNGHLVIARAFLT 211
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure
initiative, midwest center for struc genomics, MCSG;
1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Length = 195
Score = 46.6 bits (111), Expect = 9e-07
Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 38/197 (19%)
Query: 38 LVFIGDSL------------ISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGI 85
+V GDS+ + L + I E + + G+ GD E L R+ +
Sbjct: 4 IVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRL-NKE 62
Query: 86 LDSIKPKVIVILVGTN----NTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKL 141
+ KP +VI G N + + + + +I + V+++
Sbjct: 63 VLIEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIG----SEKVILITPPYADSG 118
Query: 142 I--NKLWTKNLATNQI---LADKLSPAPLGPKVHLIQHNK--DEIISKDEISQGDFYDYL 194
+ T+ ++ + + +I K DE Q D L
Sbjct: 119 RRPERPQTRIKELVKVAQEVGAAH-------NLPVIDLYKAMTVYPGTDEFLQ---ADGL 168
Query: 195 HLTESGYRKVFTPVYEK 211
H ++ GY + + +
Sbjct: 169 HFSQVGYELLGALIVRE 185
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer,
ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis}
PDB: 2q0s_A*
Length = 216
Score = 45.5 bits (107), Expect = 3e-06
Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 41/211 (19%)
Query: 38 LVFIGDSL------------ISFLTQTQIW-----HNLFEPLHCLAFGIGGDKVEHC--- 77
++ GDSL W L + G+
Sbjct: 5 ILCFGDSLTWGWVPVEDGAPTERFAPDVRWTGVLAQQLGADFEVIEEGLSARTTNIDDPT 64
Query: 78 ------LWRVQDGILDSIKPKVIVILVGTNNTED----SAENIADGILELIRLVQ----- 122
+ + + +++I++GTN+T+ + +IA G+ L+ V
Sbjct: 65 DPRLNGASYLPSCLATHLPLDLVIIMLGTNDTKAYFRRTPLDIALGMSVLVTQVLTSAGG 124
Query: 123 --TKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEII 180
T P V+V+ P + + + + +L+ L K
Sbjct: 125 VGTTYPAPKVLVVSPPPLAPMPHPWFQLIFEGGEQKTTELARV----YSALASFMKVPFF 180
Query: 181 SKDEISQGDFYDYLHLTESGYRKVFTPVYEK 211
+ D D +H TE+ R + + E+
Sbjct: 181 DAGSVISTDGVDGIHFTEANNRDLGVALAEQ 211
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; HET: MSE; 2.00A {Agrobacterium
tumefaciens str}
Length = 232
Score = 44.8 bits (105), Expect = 5e-06
Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 34/204 (16%)
Query: 38 LVFIGDSL--------ISFLTQTQIW-----HNLFEPLHCLAFGIGGD---KVEHCLWRV 81
++ GDSL W L G+GG +H
Sbjct: 26 VLAFGDSLTWGADPATGLRHPVEHRWPDVLEAELAGKAKVHPEGLGGRTTCYDDHAGPAC 85
Query: 82 QDG------ILDSIKP-KVIVILVGTNNTED----SAENIADGILELIRLVQTKQPQ--- 127
++G L P +++I++GTN+ + AE G+ L ++V+T +
Sbjct: 86 RNGARALEVALSCHMPLDLVIIMLGTNDIKPVHGGRAEAAVSGMRRLAQIVETFIYKPRE 145
Query: 128 ADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQ 187
A +L + P + + + +L+P L ++
Sbjct: 146 AVPKLLIVAPPPCVAGPGGEPAGGRDIEQSMRLAPLY----RKLAAELGHHFFDAGSVAS 201
Query: 188 GDFYDYLHLTESGYRKVFTPVYEK 211
D +HL S + +
Sbjct: 202 ASPVDGVHLDASATAAIGRALAAP 225
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP:
c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Length = 190
Score = 42.2 bits (99), Expect = 3e-05
Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 38 LVFIGDSLIS--FLTQTQIW-----HNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIK 90
L+ +GDSL + ++ + W + I GD + L R+ +L +
Sbjct: 4 LLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARL-PALLKQHQ 62
Query: 91 PKVIVILVGTNNTED--SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTK 148
P+ +++ +G N+ + + ++++ V+ + ++ + L N
Sbjct: 63 PRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPA-----NYGRRY 117
Query: 149 NLATNQI---LADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKV 204
N A + I LA + V L+ +E+ K + Q D +H +
Sbjct: 118 NEAFSAIYPKLAKEF-------DVPLLPFFMEEVYLKPQWMQD---DGIHPNRDAQPFI 166
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate
metabolism, polysaccharide degradation, esterase,
hydrolase, cellulases; HET: BGC; 1.80A {Clostridium
thermocellum} PDB: 2wab_A*
Length = 341
Score = 38.6 bits (89), Expect = 8e-04
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 14/115 (12%)
Query: 93 VIVILVGTNNTED---SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKN 149
V+VI +GTN+ LI V+ P A + L
Sbjct: 216 VVVINLGTNDFSTSFADKTKFVTAYKNLISEVRRNYPDAHIFCCVGPMLWGTGLDLCRS- 274
Query: 150 LATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKV 204
+++ D KV+ ++ + + + H + + ++ +
Sbjct: 275 -YVTEVVNDCNRSG--DLKVYFVE-------FPQQDGSTGYGEDWHPSIATHQLM 319
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate
binding, plant cell WALL degradation, hydrolase,
cellulases; 1.80A {Cellvibrio japonicus}
Length = 347
Score = 38.7 bits (89), Expect = 8e-04
Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 20/154 (12%)
Query: 54 IWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNT---EDSAENI 110
+ + + +P +I+ +GTN+
Sbjct: 189 LIRSWNGKTDDANLPDFYQFTLGDTGQAPQWDHHRYQPDLIISAIGTNDFSPGIPDRATY 248
Query: 111 ADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVH 170
+ +R + PQA +V+ E L A + +V
Sbjct: 249 INTYTRFVRTLLDNHPQATIVLTEGAI-------LNGDKKAALVSYIGETRQQLHSNRVF 301
Query: 171 LIQHNKDEIISKDEISQGDFYDYLHLTESGYRKV 204
+ GD D H T+ + +
Sbjct: 302 YASSSHHP---------GDNSDA-HPTKDQHAAM 325
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 41 IGDSLISFLTQTQI-WHNL--FEPLHCLAFGIGGDK-VEHCLWRVQDGILDSIKPKVIVI 96
I + ++ + + + W F+ H L FG GG + R +DG V VI
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT------GVRVI 528
Query: 97 LVGTNNTEDSAE 108
+ GT + +
Sbjct: 529 VAGTLDINPDDD 540
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase;
HET: MIR; 1.35A {Pseudoalteromonas SP}
Length = 185
Score = 35.3 bits (81), Expect = 0.006
Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 31/189 (16%)
Query: 38 LVFIGDSLISF--LTQTQIWHNLFE--------PLHCLAFGIGGDKVEHCLWRVQDGILD 87
++ +GD L + L Q + W L + + + I G+ L R+ D +L+
Sbjct: 5 ILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRL-DALLE 63
Query: 88 SIKPKVIVILVGTNNT--EDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKL 145
+P ++I +G N+ + + + L++ Q L +
Sbjct: 64 QYEPTHVLIELGANDGLRGFPVKKMQTNLTALVKKSQAANAM---TALMEIYIPPNYGPR 120
Query: 146 WTKNLATNQI---LADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYR 202
++K +++ HL+ +I K ++ Q D LH +
Sbjct: 121 YSKMF--TSSFTQISEDT-------NAHLMNFFMLDIAGKSDLMQ---NDSLHPNKKAQP 168
Query: 203 KVFTPVYEK 211
+ +Y+
Sbjct: 169 LIRDEMYDS 177
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II),
NYSGXRC, structural genomics; 1.87A {Bacteroides
thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Length = 274
Score = 32.5 bits (73), Expect = 0.066
Identities = 31/234 (13%), Positives = 63/234 (26%), Gaps = 64/234 (27%)
Query: 38 LVFIGDSLISFLTQ--------TQIWHNLFEPLHCLA--FGIGGDKVEHCLWRVQDGILD 87
+ +IGDS +T + W L E L +GI G + + + + +
Sbjct: 29 VGYIGDS----ITDPNCYGDNIKKYWDFLKEWLGITPFVYGISGRQWDDVPRQAEKLKKE 84
Query: 88 SI-KPKVIVILVGTNN-----------------------------------TEDSAENIA 111
+ I++ +GTN+ + +
Sbjct: 85 HGGEVDAILVFMGTNDYNSSVPIGEWFTEQEEQVLSAHGEMKKMVTRKKRTPVMTQDTYR 144
Query: 112 DGILELIRLVQTKQPQADVVVLELLPRGKL---------INKLWTKNLATNQILADKLSP 162
I I ++ P +V+L L R +
Sbjct: 145 GRINIGITQLKKLFPDKQIVLLTPLHRSLANFGDKNVQPDESYQNGCGEYIDAYVQAIKE 204
Query: 163 APLGPKVHLIQHNKDEIISKDEISQGDFY-----DYLHLTESGYRKVFTPVYEK 211
A + +I N ++ Q ++ D LH G ++ + +
Sbjct: 205 AGNIWGIPVIDFNAVTGMNPMVEEQLIYFYDAGYDRLHPDTKGQERMARTLMYQ 258
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics,
PSI-2, protein structure initiative; 2.10A {Bacillus
subtilis} SCOP: b.18.1.32 c.23.10.8
Length = 375
Score = 29.8 bits (66), Expect = 0.72
Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 29/163 (17%)
Query: 67 FGIGGDKVEHCL--WRVQDGILDSIKP-KVIVILVGTN----NTEDSAENIADGILELIR 119
GG +++ IL IKP ++ +G N ++S + + ++IR
Sbjct: 205 MASGGQIARGFRNDGQLEA-ILKYIKPGDYFMLQLGINDTNPKHKESEAEFKEVMRDMIR 263
Query: 120 LVQTKQPQADVVVLELLPRGKLINKLWTKN------LATNQILADKLSPAPLGPKVHLIQ 173
V K ADV++ R + A+ LA++ K +LI
Sbjct: 264 QV--KAKGADVILSTPQGRATDFTSEGIHSSVNRWYRASILALAEEE-------KTYLID 314
Query: 174 HNKDEIISKDEI----SQGDFY--DYLHLTESGYRKVFTPVYE 210
N I + G + D LH +G + +
Sbjct: 315 LNVLSSAYFTSIGPERTLGLYMDGDTLHPNRAGADALARLAVQ 357
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.93
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 9/31 (29%)
Query: 9 QKNQVDLGDNRWYNQHEHQLQL-AKESEPEL 38
+K + + + L+L A +S P L
Sbjct: 18 EKQAL--------KKLQASLKLYADDSAPAL 40
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori
aliphatic amidase, hydrolase; 1.75A {Helicobacter
pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Length = 334
Score = 28.9 bits (65), Expect = 1.2
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 101 NNTEDSAENIADGILELIRLVQTKQPQADVVVL-EL 135
N+ +D NI I+ + + P ++++ E
Sbjct: 27 NSRKDIDHNIE-SIIRTLHATKAGYPGVELIIFPEY 61
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound
FMN, electron transport; HET: FNR; NMR {Megasphaera
elsdenii} SCOP: c.23.5.1
Length = 137
Score = 28.2 bits (63), Expect = 1.2
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 93 VIVILVG--TNNTEDSAENIADGILE 116
++ I+ T NTE A I +
Sbjct: 1 MVEIVYWSGTGNTEAMANEIEAAVKA 26
>3ahp_A CUTA1; thermostable protein, electron transport; 2.70A {Shewanella}
Length = 108
Score = 26.8 bits (59), Expect = 2.9
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 90 KPKVIVILVGTNNTEDSAENIADGILE 116
KP+ ++I T D A IA ++E
Sbjct: 3 KPEQLLIFT-TCPDADIACRIATALVE 28
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate
esterase family 2, hydrolase; 2.00A {Cellvibrio
japonicus}
Length = 366
Score = 27.8 bits (61), Expect = 2.9
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 90 KPKVIVILVGTN-------------NTEDSAENIADGILELIRLVQTKQPQADVVVL 133
KP+VIVI +GTN E + ++ ++ + + +A +++
Sbjct: 236 KPQVIVIGLGTNDFSTALNDNERWKTREALHADYVANYVKFVKQLHSNNARAQFILM 292
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural
genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}
Length = 242
Score = 27.3 bits (61), Expect = 3.3
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 83 DGILDSIKPKV-----IVILVGTNNTEDSAENIADGILELIRLVQTKQPQAD--VVVLEL 135
DGI+ + + + E A+ IAD +LE + + D VVVL L
Sbjct: 164 DGIIGAGGRRGQPLEFLATGGRVAGPETPAQAIADELLEAALVADDGRAGDDMTVVVLRL 223
Query: 136 LPRGKL 141
++
Sbjct: 224 RNVEEV 229
Score = 27.0 bits (60), Expect = 4.4
Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 157 ADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGY 201
++ ++P P+ ++ + + +K S GD + + G+
Sbjct: 1 SNAMTPMPVTIELAVAKTHKFG----TRES-GDTVELVERPGGGF 40
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer,
thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A
{Pseudomonas aeruginosa} PDB: 2plq_A
Length = 341
Score = 27.1 bits (60), Expect = 4.0
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 97 LVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVL-EL 135
+ + + +N I E+I ++ P D+VV E
Sbjct: 22 MPRLHTAAEVLDNARK-IAEMIVGMKQGLPGMDLVVFPEY 60
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta
structure, transcription; 2.90A {Sulfolobus tokodaii}
Length = 199
Score = 26.6 bits (59), Expect = 4.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 88 SIKPKVIVILVGTNNTEDSAENIADGI 114
S KP ++V+ G + + A+ I G
Sbjct: 2 SCKPNILVLFYGYGSIVELAKEIGKGA 28
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A
{Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A*
2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A*
2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Length = 138
Score = 26.4 bits (59), Expect = 4.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 94 IVILVG--TNNTEDSAENIADGILE 116
+ I+ T NTE AE IA GI+E
Sbjct: 1 MKIVYWSGTGNTEKMAELIAKGIIE 25
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A
{Methanocaldococcus jannaschii}
Length = 268
Score = 26.9 bits (59), Expect = 5.1
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 47 SFLTQTQIWHNLFEPLH---CLAFGIGGDKVEHCLWRVQ----DGILDSIKPKVIVIL-- 97
++L ++ L E L L F IGGD + I + I K + L
Sbjct: 155 TYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPSNGMSEEDFLDIFNRINKKYKIELKA 214
Query: 98 -VGTNNTEDSAENIADGILELIR 119
+G T + A N+AD LE IR
Sbjct: 215 GIGIGRTAEDASNLADIGLEKIR 237
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE,
anisotropic refinement, redox protein; HET: FMN; 1.30A
{Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A*
1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A*
1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A*
1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Length = 147
Score = 26.4 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 91 PKVIVILVG--TNNTEDSAENIADGILEL 117
PK +I+ G T NTE +AE IA + +
Sbjct: 1 PK-ALIVYGSTTGNTEYTAETIARELADA 28
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative, northeast
structural genomics consortium; 2.30A {Nostoc SP} PDB:
2klb_A
Length = 159
Score = 26.4 bits (58), Expect = 6.2
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 90 KPKVIVILV-GTNNTEDSAENIADGILE 116
+ + V V ++ A+ I +GI +
Sbjct: 4 ETSIGVFYVSEYGYSDRLAQAIINGITK 31
>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper
resistance, structural proteomics in europe, spine,
structural genomics; HET: MBO; 1.70A {Escherichia coli}
SCOP: d.58.5.2 PDB: 3ah6_A 3aa9_A 3aa8_A 3opk_A
Length = 112
Score = 25.5 bits (56), Expect = 6.5
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 87 DSIKPKVIVILVGTNNTEDSAENIADGILE 116
S +V+L T E +A+++A +L
Sbjct: 5 KSSNTASVVVLC-TAPDEATAQDLAAKVLA 33
>2zom_A CUTA1, protein CUTA, chloroplast, putative, expressed; trimeric
structure, protein stability, unknown function; 3.02A
{Oryza sativa subsp}
Length = 113
Score = 25.6 bits (56), Expect = 7.1
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 87 DSIKPKVIVILVGTNNTEDSAENIADGILE 116
S IV+ V T +++ + +A I+
Sbjct: 4 TSTTVPSIVVYV-TVPNKEAGKRLAGSIIS 32
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
c.124.1.2 c.124.1.2
Length = 497
Score = 26.7 bits (59), Expect = 7.2
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 41 IGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGT 100
I + LI F + + L L GIG + + ++ +
Sbjct: 236 IANHLIDFFKREVDAGRMSNSLGPLQAGIGS---------IANAVMCGLIES------PF 280
Query: 101 NNTEDSAENIADGILELIR 119
N +E + D +LI
Sbjct: 281 ENLTMYSEVLQDSTFDLID 299
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 7.5
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 9 QKNQVDLGDNRWYNQHEHQLQLAKES--EPELVFIGD 43
+K + DL + W + Q++ K + + F
Sbjct: 114 EKAKKDLEE--WNQRQSEQVEKNKINNRIADKAFYQQ 148
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 26.3 bits (59), Expect = 8.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 87 DSIKPKVIVILVGTNNTEDSAEN 109
+ IK V+ VGT D +
Sbjct: 227 EWIKEGAAVVDVGTTPVPDPSRK 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.417
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,174,232
Number of extensions: 181050
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 51
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)