RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1995
(211 letters)
>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase
{Cow (Bos taurus), alpha1 [TaxId: 9913]}
Length = 212
Score = 131 bits (329), Expect = 7e-39
Identities = 89/209 (42%), Positives = 125/209 (59%), Gaps = 3/209 (1%)
Query: 3 NPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPL 62
NP P Q GD +W + H + +K+ EPE+VFIGDSL+ + Q +IW LF PL
Sbjct: 2 NPASKPTPVQDVQGDGKWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPL 61
Query: 63 HCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQ 122
H L FGIGGD +H LWR+++G L+ I+PK++V+ VGTNN +AE + GI +++LV
Sbjct: 62 HALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVN 121
Query: 123 TKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISK 182
+QPQA VVVL LLPRG+ N L KN N+++ L+ P+ H + + + S
Sbjct: 122 ERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAG---HPRAHFLDADPGFVHSD 178
Query: 183 DEISQGDFYDYLHLTESGYRKVFTPVYEK 211
IS D YDYLHL+ GY V ++
Sbjct: 179 GTISHHDMYDYLHLSRLGYTPVCRALHSL 207
>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase
{Cow (Bos taurus), alpha2 [TaxId: 9913]}
Length = 212
Score = 128 bits (323), Expect = 4e-38
Identities = 92/209 (44%), Positives = 132/209 (63%), Gaps = 3/209 (1%)
Query: 3 NPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPL 62
NP +P + GD+RW +QH + K+ EP+++F+GDS++ + Q +IW LF PL
Sbjct: 2 NPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPL 61
Query: 63 HCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQ 122
H L FGIGGD H LWR+++G L++IKPKVIV+ VGTNN E++AE +A GI +++L+
Sbjct: 62 HALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLIN 121
Query: 123 TKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISK 182
T+QPQA ++VL LLPRG+ N L KN NQ+L L V L+ + + S
Sbjct: 122 TRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPK---LANVQLLDTDGGFVHSD 178
Query: 183 DEISQGDFYDYLHLTESGYRKVFTPVYEK 211
IS D +D+LHLT GY K+ P++E
Sbjct: 179 GAISCHDMFDFLHLTGGGYAKICKPLHEL 207
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 211
Score = 56.6 bits (135), Expect = 1e-10
Identities = 34/205 (16%), Positives = 76/205 (37%), Gaps = 17/205 (8%)
Query: 20 WYNQHEHQLQL-------AKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGD 72
W + + ++Q EP ++FIGDS++ + + + GI G
Sbjct: 9 WLLKEQEKIQTKYRHLNHISVVEPNILFIGDSIVEYY---PLQELFGTSKTIVNRGIRGY 65
Query: 73 KVEHCLWRVQDGILDSIKPKVIVILVGTNN--TEDSAENIADGILELIRLVQTKQPQADV 130
+ L + L I +L+GTN+ + + + +I+ V P ++
Sbjct: 66 QTGLLLENLDA-HLYGGAVDKIFLLIGTNDIGKDVPVNEALNNLEAIIQSVARDYPLTEI 124
Query: 131 VVLELLPRGKLINKLWTKNLATNQILAD----KLSPAPLGPKVHLIQHNKDEIISKDEIS 186
+L +LP + + +N+ + + A +V + ++
Sbjct: 125 KLLSILPVNEREEYQQAVYIRSNEKIQNWNQAYQELASAYMQVEFVPVFDCLTDQAGQLK 184
Query: 187 QGDFYDYLHLTESGYRKVFTPVYEK 211
+ D LHL+ +GY+ + + +
Sbjct: 185 KEYTTDGLHLSIAGYQALSKSLKDY 209
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323
{Lactobacillus plantarum [TaxId: 1590]}
Length = 207
Score = 48.6 bits (114), Expect = 9e-08
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 22/189 (11%)
Query: 38 LVFIGDSLI--SFLTQTQIWHNL---FEPLHCLAFGIGGDKVEHCLWRVQDGI-LDSIKP 91
++GDS+ + L L ++ GI G + +
Sbjct: 7 PAWLGDSITANNGLATVHYHDILAADWDVERSDNLGISGSTIGSRYDAMAVRYQAIPEDA 66
Query: 92 KVIVILVGTNNT----------EDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKL 141
I + G N+ + ++ L+ +QT P + + + G
Sbjct: 67 DFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSD 126
Query: 142 INKLWTKNL----ATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFY--DYLH 195
++ ++ V + +D ++ +Q Y D LH
Sbjct: 127 FGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYRDAGMTFAIPAQAAIYSVDTLH 186
Query: 196 LTESGYRKV 204
+G+R +
Sbjct: 187 PNNAGHRVI 195
>d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp. pcc
7120 [TaxId: 103690]}
Length = 201
Score = 35.9 bits (81), Expect = 0.001
Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 20/189 (10%)
Query: 33 ESEPELVFIGDSLI---------SFLTQ-TQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQ 82
+++ + F+GDS + + + + + GI D R
Sbjct: 2 KTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWL 61
Query: 83 DGI---LDSIKPKVIVILVGTN----NTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135
+ L ++V G N +IA+ I ++ + V+++
Sbjct: 62 QEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLMISP 121
Query: 136 LPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLH 195
P + + + + P + + + + E D +H
Sbjct: 122 APYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKAND---GVH 178
Query: 196 LTESGYRKV 204
GY +
Sbjct: 179 PQAGGYTEF 187
>d1jrla_ c.23.10.5 (A:) Thioesterase I, TAP {Escherichia coli
[TaxId: 562]}
Length = 179
Score = 33.1 bits (74), Expect = 0.012
Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 18/181 (9%)
Query: 38 LVFIGDSLIS--FLTQTQIW-----HNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIK 90
L+ +GDSL + ++ + W + I GD + L R+ +L +
Sbjct: 4 LLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPA-LLKQHQ 62
Query: 91 PKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNL 150
P+ +++ +G N+ + L K A+ +++++ P +
Sbjct: 63 PRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRPPANYGRRYNEAFS 122
Query: 151 ATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210
A LA + V L+ +E+ K + Q D +H + + +
Sbjct: 123 AIYPKLAKEF-------DVPLLPFFMEEVYLKPQWMQ---DDGIHPNRDAQPFIADWMAK 172
Query: 211 K 211
+
Sbjct: 173 Q 173
>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus
subtilis [TaxId: 1423]}
Length = 208
Score = 31.2 bits (69), Expect = 0.061
Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 20/193 (10%)
Query: 38 LVFIGDSL-----ISFLTQTQIWHNLFE------PLHCLAFGIGGDKVEHCLWRVQ-DGI 85
+ GDS ++ W + GG Q + I
Sbjct: 6 IYVGGDSTVCNYYPLNSSKQAGWGQMLPHYIDKHTFQVRNMASGGQIARGFRNDGQLEAI 65
Query: 86 LDSIKP-KVIVILVGTNNTEDSAENIADGILE-LIRLVQTKQPQADVVVLELLPRGKLIN 143
L IKP ++ +G N+T + E + +++ + + V+L
Sbjct: 66 LKYIKPGDYFMLQLGINDTNPKHKESEAEFKEVMRDMIRQVKAKGADVILSTPQGRATDF 125
Query: 144 KLWTKNLATNQILADKLSPAPLGPKVHLIQHNK------DEIISKDEISQGDFYDYLHLT 197
+ + N+ + K +LI N I + + D LH
Sbjct: 126 TSEGIHSSVNRWYRASILALAEEEKTYLIDLNVLSSAYFTSIGPERTLGLYMDGDTLHPN 185
Query: 198 ESGYRKVFTPVYE 210
+G + +
Sbjct: 186 RAGADALARLAVQ 198
>d1yzfa1 c.23.10.5 (A:1-195) Lipase/acylhydrolase {Enterococcus
faecalis [TaxId: 1351]}
Length = 195
Score = 30.5 bits (67), Expect = 0.12
Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 14/185 (7%)
Query: 38 LVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHC-----------LWRVQDGIL 86
+V GDS+ + + L + + +G ++V + + +
Sbjct: 4 IVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEV 63
Query: 87 DSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLW 146
KP +VI G N+ E + + + V+++
Sbjct: 64 LIEKPDEVVIFFGANDASLDRNITVATFRENLETMIHEIGSEKVILITPPYADSGRRPER 123
Query: 147 TKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFT 206
+ + + A V + DE Q D LH ++ GY +
Sbjct: 124 PQTRIKELVKVAQEVGAAHNLPVIDLYKAMTVYPGTDEFLQ---ADGLHFSQVGYELLGA 180
Query: 207 PVYEK 211
+ +
Sbjct: 181 LIVRE 185
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 248
Score = 30.3 bits (66), Expect = 0.13
Identities = 25/230 (10%), Positives = 60/230 (26%), Gaps = 56/230 (24%)
Query: 38 LVFIGDSL---ISFLTQTQIWHNLFEP---LHCLAFGIGGDKVEHCLWRVQDGI-LDSIK 90
+ +IGDS+ + + + + + + +GI G + + + + +
Sbjct: 11 VGYIGDSITDPNCYGDNIKKYWDFLKEWLGITPFVYGISGRQWDDVPRQAEKLKKEHGGE 70
Query: 91 PKVIVILVGT-----------------------------------NNTEDSAENIADGIL 115
I++ +GT + + I
Sbjct: 71 VDAILVFMGTNDYNSSVPIGEWFTEQEEQVLSAHGEMKKMVTRKKRTPVMTQDTYRGRIN 130
Query: 116 ELIRLVQTKQPQADVVVLELLPRGKL---------INKLWTKNLATNQILADKLSPAPLG 166
I ++ P +V+L L R + A
Sbjct: 131 IGITQLKKLFPDKQIVLLTPLHRSLANFGDKNVQPDESYQNGCGEYIDAYVQAIKEAGNI 190
Query: 167 PKVHLIQHNKDEIISKDEISQGDFY-----DYLHLTESGYRKVFTPVYEK 211
+ +I N ++ Q ++ D LH G ++ + +
Sbjct: 191 WGIPVIDFNAVTGMNPMVEEQLIYFYDAGYDRLHPDTKGQERMARTLMYQ 240
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId:
881]}
Length = 147
Score = 27.4 bits (60), Expect = 0.81
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 91 PKVIVILVG--TNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLI 142
PK +I+ G T NTE +AE IA + + V ++ A V L L+
Sbjct: 1 PKA-LIVYGSTTGNTEYTAETIARELADAGYEVDSRDA-ASVEAGGLFEGFDLV 52
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 149
Score = 27.0 bits (59), Expect = 1.3
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 90 KPKVIVILV-GTNNTEDSAENIADGILE 116
K K ++ +TE A + DG++
Sbjct: 2 KAKAVIAYDTMWLSTEKMAHALMDGLVA 29
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId:
907]}
Length = 137
Score = 26.2 bits (57), Expect = 1.8
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 93 VIVILVG--TNNTEDSAENIADGI 114
++ I+ T NTE A I +
Sbjct: 1 MVEIVYWSGTGNTEAMANEIEAAV 24
>d1iysa_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli,
TOHO-1 [TaxId: 562]}
Length = 261
Score = 26.3 bits (57), Expect = 2.5
Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 12/122 (9%)
Query: 8 PQKNQVDLGDNRWYNQHEHQLQLAKE---SEPELVFIGDSLISFLTQTQIWHNLFEPLHC 64
P N GD R Q K + L+++L
Sbjct: 140 PTLNTAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLP 199
Query: 65 LAFGIG-----GDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIR 119
++ +G GD ++ +V++ E AE D + +
Sbjct: 200 KSWVVGDKTGSGDYGTTNDI----AVIWPENHAPLVLVTYFTQPEQKAERRRDILAAAAK 255
Query: 120 LV 121
+V
Sbjct: 256 IV 257
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 274
Score = 26.4 bits (58), Expect = 2.9
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 41 IGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGT 100
I + LI F + + L L GIG + + ++ +
Sbjct: 13 IANHLIDFFKREVDAGRMSNSLGPLQAGIGS---------IANAVMCGLIESPFE----- 58
Query: 101 NNTEDSAENIADGILELIR 119
N +E + D +LI
Sbjct: 59 -NLTMYSEVLQDSTFDLID 76
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 26.2 bits (57), Expect = 3.0
Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 108 ENIADGILELIRLVQTKQPQADVVVLELLP-RGKLINKLWTKNLATNQILADKLSPAPLG 166
+ + I + + L +T + ++ VL+L P G + Q + +
Sbjct: 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFY-NKYCPRQYSLLEKRSSLYK 81
Query: 167 PKVHLIQHNKDEIISKD 183
+ + +I+ +D
Sbjct: 82 FLNAKFEGSPLQILKRD 98
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD)
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 92
Score = 25.0 bits (54), Expect = 3.3
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 18 NRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLF 59
N E + K + +SF I H++F
Sbjct: 41 NGANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHILHSIF 82
>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 196
Score = 26.1 bits (56), Expect = 3.3
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 91 PKVIVILV-GTNNTEDSAENIADGI 114
P ++V+ T + A IA G+
Sbjct: 2 PYILVLYYSRHGATAEMARQIARGV 26
>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 122
Score = 25.5 bits (55), Expect = 3.7
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 27 QLQLAKESEPELVFIGDSL-----ISFLTQTQIWHNL 58
Q++L ++S E+ G S+ S + T +
Sbjct: 1 QVKLLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHW 37
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 333
Score = 25.9 bits (55), Expect = 4.0
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 95 VILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVL 133
++ N D A+ +A I E + + ++ D VL
Sbjct: 3 ILYYEAMNEADEAQFVAGRIREAVE--RGERRYRDFAVL 39
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase
(ROO), C-terminal domain {Desulfovibrio gigas [TaxId:
879]}
Length = 152
Score = 25.0 bits (54), Expect = 4.9
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 90 KPKVIVILV-GTNNTEDSAENIADGILE 116
KV++ ++TE A +A+ +
Sbjct: 2 TNKVVIFYDSMWHSTEKMARVLAESFRD 29
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 148
Score = 24.8 bits (53), Expect = 6.0
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 90 KPKVIVILV-GTNNTEDSAENIADGILE 116
K KV VI E+ + D + E
Sbjct: 3 KGKVTVIYDSMYGFVENVMKKAIDSLKE 30
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 25.2 bits (53), Expect = 6.2
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 103 TEDSAENIADGILELIRLVQTKQPQADVVVL 133
+ D N+ I +QP +VVL
Sbjct: 21 SPDKMANLQR-AATFIERAMKEQPDTKLVVL 50
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 25.0 bits (53), Expect = 7.0
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 85 ILDSIKPKVIVILVGTNNT 103
+ ++ P +IV +
Sbjct: 236 FIKNLSPSLIVQTSDSLPW 254
>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus
subtilis [TaxId: 1423]}
Length = 392
Score = 25.2 bits (54), Expect = 7.5
Identities = 8/78 (10%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 106 SAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILAD---KLSP 162
+ + I DG L + + ++ +++ + +P K++ + W + +I + +
Sbjct: 30 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGE 89
Query: 163 APLGPKVHLIQHNKDEII 180
+ + + +
Sbjct: 90 HVPHLVPRVFYSDTEMAV 107
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii
[TaxId: 354]}
Length = 179
Score = 24.6 bits (53), Expect = 7.6
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 94 IVILVGTN--NTEDSAENIADGI 114
I + G+N T A++I
Sbjct: 3 IGLFFGSNTGKTRKVAKSIKKRF 25
>d1naqa_ d.58.5.2 (A:) Cut A1 {Escherichia coli [TaxId: 562]}
Length = 106
Score = 24.0 bits (52), Expect = 9.1
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 92 KVIVILVGTNNTEDSAENIADGILE 116
+V+L T E +A+++A +L
Sbjct: 4 ASVVVLC-TAPDEATAQDLAAKVLA 27
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120
[TaxId: 1163]}
Length = 169
Score = 24.3 bits (52), Expect = 9.2
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 92 KVIVILVGTN--NTEDSAENIADGI 114
K I + GT TE AE I D
Sbjct: 2 KKIGLFYGTQTGKTESVAEIIRDEF 26
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Length = 173
Score = 24.3 bits (52), Expect = 9.8
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 94 IVILVGTN--NTEDSAENIADGILE 116
I I T+ NT + A+ I +
Sbjct: 2 IGIFFSTSTGNTTEVADFIGKTLGA 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.417
Gapped
Lambda K H
0.267 0.0396 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,939
Number of extensions: 34288
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 34
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)