BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1999
         (177 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YRL|A Chain A, Solution Structure Of The Pkd Domain From Kiaa 1837
           Protein
          Length = 102

 Score = 37.0 bits (84), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 112 EANAGSDVILYLPNSNVTLNGNMSTDDHGLVSYEWTLRESLNQHKPVDMQKSKTPYLQLS 171
           +A+AG D  L LP  + TL+G+ S+DD  ++SY W   E       V ++ + +    ++
Sbjct: 8   QADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLW---EKTQGPDGVQLENANSSVATVT 64

Query: 172 NLELG 176
            L++G
Sbjct: 65  GLQVG 69


>pdb|3TE2|A Chain A, Crystal Structure Of Hsc K16s
 pdb|3TE2|B Chain B, Crystal Structure Of Hsc K16s
 pdb|3TE2|C Chain C, Crystal Structure Of Hsc K16s
 pdb|3TE2|D Chain D, Crystal Structure Of Hsc K16s
 pdb|3TE2|E Chain E, Crystal Structure Of Hsc K16s
          Length = 268

 Score = 30.0 bits (66), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 15 AHNPT-DSLSTSQLNSKKLLNKEKCTKIYPKKFVG-YVPFGNRAAGNFTKVVPEEGLPMT 72
          AH  T D L+ + +NS  LLN  K   +    F G YV  G         ++ + G PMT
Sbjct: 4  AHKETLDKLTNAAINSINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMT 63


>pdb|3TDS|E Chain E, Crystal Structure Of Hsc F194i
 pdb|3TDS|A Chain A, Crystal Structure Of Hsc F194i
 pdb|3TDS|B Chain B, Crystal Structure Of Hsc F194i
 pdb|3TDS|C Chain C, Crystal Structure Of Hsc F194i
 pdb|3TDS|D Chain D, Crystal Structure Of Hsc F194i
          Length = 268

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 15 AHNPT-DSLSTSQLNSKKLLNKEKCTKIYPKKFVG-YVPFGNRAAGNFTKVVPEEGLPMT 72
          AH  T D L+ + +N   LLN  K   +    F G YV  G         ++ + G PMT
Sbjct: 4  AHKETLDKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMT 63


>pdb|3TE0|A Chain A, Crystal Structure Of Hsc K148e
 pdb|3TE0|B Chain B, Crystal Structure Of Hsc K148e
 pdb|3TE0|C Chain C, Crystal Structure Of Hsc K148e
 pdb|3TE0|D Chain D, Crystal Structure Of Hsc K148e
 pdb|3TE0|E Chain E, Crystal Structure Of Hsc K148e
          Length = 268

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 15 AHNPT-DSLSTSQLNSKKLLNKEKCTKIYPKKFVG-YVPFGNRAAGNFTKVVPEEGLPMT 72
          AH  T D L+ + +N   LLN  K   +    F G YV  G         ++ + G PMT
Sbjct: 4  AHKETLDKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMT 63


>pdb|3TDX|A Chain A, Crystal Structure Of Hsc L82v
 pdb|3TDX|B Chain B, Crystal Structure Of Hsc L82v
 pdb|3TDX|C Chain C, Crystal Structure Of Hsc L82v
 pdb|3TDX|D Chain D, Crystal Structure Of Hsc L82v
 pdb|3TDX|E Chain E, Crystal Structure Of Hsc L82v
          Length = 268

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 15 AHNPT-DSLSTSQLNSKKLLNKEKCTKIYPKKFVG-YVPFGNRAAGNFTKVVPEEGLPMT 72
          AH  T D L+ + +N   LLN  K   +    F G YV  G         ++ + G PMT
Sbjct: 4  AHKETLDKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMT 63


>pdb|3TDO|A Chain A, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDO|B Chain B, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDO|C Chain C, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDO|D Chain D, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDO|E Chain E, Crystal Structure Of Hsc At Ph 9.0
 pdb|3TDR|A Chain A, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|B Chain B, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|C Chain C, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|D Chain D, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|E Chain E, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|F Chain F, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|G Chain G, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|H Chain H, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|I Chain I, Crystal Structure Of Hsc At Ph 7.5
 pdb|3TDR|J Chain J, Crystal Structure Of Hsc At Ph 7.5
          Length = 268

 Score = 28.1 bits (61), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 15 AHNPT-DSLSTSQLNSKKLLNKEKCTKIYPKKFVG-YVPFGNRAAGNFTKVVPEEGLPMT 72
          AH  T D L+ + +N   LLN  K   +    F G YV  G         ++ + G PMT
Sbjct: 4  AHKETLDKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMT 63


>pdb|3TE1|A Chain A, Crystal Structure Of Hsc T84a
 pdb|3TE1|B Chain B, Crystal Structure Of Hsc T84a
 pdb|3TE1|C Chain C, Crystal Structure Of Hsc T84a
 pdb|3TE1|D Chain D, Crystal Structure Of Hsc T84a
 pdb|3TE1|E Chain E, Crystal Structure Of Hsc T84a
          Length = 268

 Score = 28.1 bits (61), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 15 AHNPT-DSLSTSQLNSKKLLNKEKCTKIYPKKFVG-YVPFGNRAAGNFTKVVPEEGLPMT 72
          AH  T D L+ + +N   LLN  K   +    F G YV  G         ++ + G PMT
Sbjct: 4  AHKETLDKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMT 63


>pdb|3TDP|A Chain A, Crystal Structure Of Hsc At Ph 4.5
 pdb|3TDP|B Chain B, Crystal Structure Of Hsc At Ph 4.5
 pdb|3TDP|C Chain C, Crystal Structure Of Hsc At Ph 4.5
 pdb|3TDP|D Chain D, Crystal Structure Of Hsc At Ph 4.5
 pdb|3TDP|E Chain E, Crystal Structure Of Hsc At Ph 4.5
          Length = 257

 Score = 28.1 bits (61), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 15 AHNPT-DSLSTSQLNSKKLLNKEKCTKIYPKKFVG-YVPFGNRAAGNFTKVVPEEGLPMT 72
          AH  T D L+ + +N   LLN  K   +    F G YV  G         ++ + G PMT
Sbjct: 2  AHKETLDKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMT 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,391,891
Number of Sequences: 62578
Number of extensions: 217718
Number of successful extensions: 435
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 9
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)