Query psy1999
Match_columns 177
No_of_seqs 127 out of 190
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 21:37:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00765 MANEC The MANEC dom 98.4 1.1E-07 2.3E-12 71.7 1.1 66 35-104 3-73 (93)
2 PF07502 MANEC: MANEC domain; 97.8 6.9E-06 1.5E-10 61.5 1.0 34 71-104 36-72 (92)
3 PF02010 REJ: REJ domain; Int 97.3 0.00015 3.3E-09 64.4 2.9 79 49-150 41-126 (440)
4 TIGR00864 PCC polycystin catio 88.4 1.3 2.9E-05 49.7 7.3 80 49-150 2213-2298(2740)
5 cd00146 PKD polycystic kidney 83.8 4.6 9.9E-05 27.6 5.8 25 125-150 14-38 (81)
6 PF02010 REJ: REJ domain; Int 81.2 0.48 1E-05 42.2 0.0 74 51-148 153-233 (440)
7 PF00801 PKD: PKD domain; Int 76.0 3.3 7.1E-05 27.9 2.9 26 123-150 9-34 (69)
8 TIGR00864 PCC polycystin catio 75.4 8.4 0.00018 43.7 7.1 72 55-152 1057-1128(2740)
9 cd00146 PKD polycystic kidney 65.4 7.2 0.00016 26.6 2.8 30 52-89 51-80 (81)
10 smart00089 PKD Repeats in poly 63.1 23 0.0005 23.9 5.0 27 124-151 13-39 (79)
11 PF08277 PAN_3: PAN-like domai 59.8 5.5 0.00012 26.9 1.3 31 70-104 19-49 (71)
12 PF07495 Y_Y_Y: Y_Y_Y domain; 58.4 22 0.00049 23.2 4.1 24 49-79 30-53 (66)
13 PRK13211 N-acetylglucosamine-b 50.3 36 0.00078 32.6 5.5 35 49-90 370-404 (478)
14 PF05345 He_PIG: Putative Ig d 32.0 45 0.00098 21.9 2.3 27 43-77 22-48 (49)
15 PF15418 DUF4625: Domain of un 27.0 48 0.001 26.3 2.0 18 54-78 103-120 (132)
16 PF14295 PAN_4: PAN domain; PD 21.2 32 0.00069 21.2 -0.0 20 72-92 17-36 (51)
17 PF01835 A2M_N: MG2 domain; I 20.3 3.2E+02 0.0069 19.2 5.2 42 109-150 30-72 (99)
No 1
>smart00765 MANEC The MANEC domain was formerly called MANSC. This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.
Probab=98.38 E-value=1.1e-07 Score=71.69 Aligned_cols=66 Identities=26% Similarity=0.523 Sum_probs=47.6
Q ss_pred ccccccccccceeeeeeeCCcce---eeEEEecCCCCCceeEEeccccccCCCeEEEEEeecc-C-CceeeEEEe
Q psy1999 35 KEKCTKIYPKKFVGYVPFGNRAA---GNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVFMYRA-E-GKINCFLVT 104 (177)
Q Consensus 35 ~~~c~~~~~~~f~~~lpl~~l~a---G~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal~~~~-~-~~i~CfLv~ 104 (177)
.+.|...++ ++.+++..++... ..|-- .|.+ .-+++||+++||++++|||||||.+ + +..+||||+
T Consensus 3 ~~~C~~~f~-~~~n~ii~t~~S~~~Ga~fL~-~p~~--~~s~edC~~aCC~~~~CnlAv~e~~~~~~~~~CyLf~ 73 (93)
T smart00765 3 GEDCLGRFR-VLENAIIRTEESLSAGARFLK-SPIA--VNTWEDCVRACCSTPNCNLAVFELRREDAEGNCYLFN 73 (93)
T ss_pred ccccccccc-cCCCeeeccchhhhccccccC-Cccc--cCCHHHHHHHHcCCCCCcEEEEeccCCCCCCceEEEE
Confidence 456988875 4888888887754 33311 1222 4477999999999999999999953 3 455599996
No 2
>PF07502 MANEC: MANEC domain; InterPro: IPR011106 The MANSC (motif at N terminus with seven cysteines) domain is a module with a well-conserved seven cysteine motif that is present at the N terminus of higher multicellular animal membrane and extracellular proteins. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulphide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase [].
Probab=97.80 E-value=6.9e-06 Score=61.54 Aligned_cols=34 Identities=29% Similarity=0.836 Sum_probs=29.0
Q ss_pred eeEEeccccccCCCeEEEEEeeccC--Ccee-eEEEe
Q psy1999 71 MTVEQCVQTCCNDESCNIVFMYRAE--GKIN-CFLVT 104 (177)
Q Consensus 71 lTV~DCvgaCC~~~~CNVal~~~~~--~~i~-CfLv~ 104 (177)
.+.+||+++||+++.|||||++... +..+ ||||+
T Consensus 36 ~s~~dC~~aCC~~~~Cnlav~e~~~~~~~~~~CyLf~ 72 (92)
T PF07502_consen 36 SSAEDCVRACCSTPNCNLAVFEERPTGSEDNSCYLFN 72 (92)
T ss_pred CCHHHHHHHhCCCCCCcEEEEeccCCCCCCceEEEEE
Confidence 3789999999999999999999653 4456 99995
No 3
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=97.31 E-value=0.00015 Score=64.38 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=22.9
Q ss_pred eeeeCCcceeeEEEecCCCCCceeEE--eccccccCCCeEEEEEeeccCCceeeEEEecCCCCCCeeecCCCeEEeeCCc
Q psy1999 49 YVPFGNRAAGNFTKVVPEEGLPMTVE--QCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPDYPPEANAGSDVILYLPNS 126 (177)
Q Consensus 49 ~lpl~~l~aG~Ytf~~~~~~~~lTV~--DCvgaCC~~~~CNVal~~~~~~~i~CfLv~k~~n~PPvA~AG~D~~v~lP~~ 126 (177)
++|-.-+.+|.|+| .++|+ +... -.....++|.+ . ..+..|+...|..+++ ...+
T Consensus 41 ~ip~~~L~~G~y~~-------~~~Vt~~~~~~-~~~~~~~~v~V-------------~-~s~l~~~I~gG~~~~~-~~~~ 97 (440)
T PF02010_consen 41 TIPPYTLPPGDYTF-------TLTVTASSNPG-LSSTDSVTVTV-------------E-PSPLVAVIKGGSSRTV-GYNS 97 (440)
T ss_dssp EEECES--SCEEEE-------EEEEE--BCTT-EEEEEEEEEEE-------------E----------------------
T ss_pred EeCcccCCCCCEEE-------EEEEEEECCCC-ceEEEEEEEEE-------------e-eccceeEEcCCcccee-ecCc
Confidence 45666779999999 88888 4444 45666777773 2 3455667766766666 4557
Q ss_pred eeEEcCCCcCC-CCC----eeeEEEEEcc
Q psy1999 127 NVTLNGNMSTD-DHG----LVSYEWTLRE 150 (177)
Q Consensus 127 ~v~LnGs~StD-D~~----IvsY~Wt~~~ 150 (177)
.++|||+.|.| |+. ..+|.|+-..
T Consensus 98 ~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~ 126 (440)
T PF02010_consen 98 DITLDGSQSYDPDGPPGDSGLTYSWSCTD 126 (440)
T ss_dssp -----------------------------
T ss_pred eEEEeeEEEecccccccCCceEEEEEEeC
Confidence 89999999999 554 4999999655
No 4
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=88.41 E-value=1.3 Score=49.65 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=50.8
Q ss_pred eeeeCCcceeeEEEecCCCCCceeEEeccccccCCCeEEEEEeeccCCceeeEEEecCCCCCCeeecCCCeEEeeCCcee
Q psy1999 49 YVPFGNRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPDYPPEANAGSDVILYLPNSNV 128 (177)
Q Consensus 49 ~lpl~~l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal~~~~~~~i~CfLv~k~~n~PPvA~AG~D~~v~lP~~~v 128 (177)
++|..-|..|+|.| .++|.--.--.-....|+|.+ .....-++...|..+++ -=...+
T Consensus 2213 ~IPk~tLp~G~Y~~-------~~~Vs~~~tpl~~sa~~~L~V--------------~~s~LvAVI~GGt~Rtv-s~~~~L 2270 (2740)
T TIGR00864 2213 SLPKLALAAGHYCF-------VFSLSFEDTPLKKAACANLGV--------------AAARLMPIIEGGSYRVW-SDTQDL 2270 (2740)
T ss_pred eccCcccCcceEEE-------EEEEEEcceEeeeEEEEEEEE--------------EcCCcEEEEcCCCcEEe-ccCccE
Confidence 45777889999999 555422111123334444442 23344455566667777 566799
Q ss_pred EEcCCCcCC-C-----CCeeeEEEEEcc
Q psy1999 129 TLNGNMSTD-D-----HGLVSYEWTLRE 150 (177)
Q Consensus 129 ~LnGs~StD-D-----~~IvsY~Wt~~~ 150 (177)
+|||+.|.| | .+-.+|.|.=..
T Consensus 2271 ~LDGS~SyDPD~~~~~~~~L~Y~W~C~~ 2298 (2740)
T TIGR00864 2271 QLDAEESYDPNLDDDDQSLLHFHWACQA 2298 (2740)
T ss_pred EEeCccccCCCCCCCCCCCcEEEEEEEE
Confidence 999999988 5 344899999433
No 5
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=83.81 E-value=4.6 Score=27.59 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=21.2
Q ss_pred CceeEEcCCCcCCCCCeeeEEEEEcc
Q psy1999 125 NSNVTLNGNMSTDDHGLVSYEWTLRE 150 (177)
Q Consensus 125 ~~~v~LnGs~StDD~~IvsY~Wt~~~ 150 (177)
++.+.|+...+.+ +.+++|.|.+-+
T Consensus 14 ~~~v~~~~~~~~~-~~~~~~~W~fgd 38 (81)
T cd00146 14 GASVTFSASDSSG-GSIVSYKWDFGD 38 (81)
T ss_pred CccEEEEEEeCCC-CCEEEEEEEeCC
Confidence 6889999887777 789999999866
No 6
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=81.15 E-value=0.48 Score=42.19 Aligned_cols=74 Identities=23% Similarity=0.416 Sum_probs=0.0
Q ss_pred eeCCcceee-EEEecCCCCCceeEEeccccccCCCeEEEEEeeccCCceeeEEEecCCCCCCeeecCC-C---eEEeeCC
Q psy1999 51 PFGNRAAGN-FTKVVPEEGLPMTVEQCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPDYPPEANAGS-D---VILYLPN 125 (177)
Q Consensus 51 pl~~l~aG~-Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal~~~~~~~i~CfLv~k~~n~PPvA~AG~-D---~~v~lP~ 125 (177)
|-..+.+|. |+| +|++++-.+ -.....-.|.+. .+.||...... + ..| -|+
T Consensus 153 ~~~~l~~~~~y~f-------~ltv~k~~r-~s~s~~~~v~v~---------------~~~~p~v~I~~~~n~~~~v-n~~ 208 (440)
T PF02010_consen 153 PASTLSPGSTYTF-------TLTVSKGSR-SSSSASQTVTVV---------------SGDPPTVSISCVSNCKGKV-NPS 208 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EhHHcCCCceEEE-------EEEEEeCCC-CceeeEEEEEec---------------cCCCCceeEcccccccccc-CCC
Confidence 456789999 999 999999887 234444444421 13344433332 1 225 799
Q ss_pred ceeEEcCCCcCCC--CCeeeEEEEE
Q psy1999 126 SNVTLNGNMSTDD--HGLVSYEWTL 148 (177)
Q Consensus 126 ~~v~LnGs~StDD--~~IvsY~Wt~ 148 (177)
+.++|.+.-+.++ ...+.|.|++
T Consensus 209 ~~l~L~~~~~~~~~~~~~~~y~Wsl 233 (440)
T PF02010_consen 209 ERLVLQASCSSCDSDSSNVSYSWSL 233 (440)
T ss_dssp -------------------------
T ss_pred CCEEEEEEEeCCCCcCCCEEEEEEE
Confidence 9999999999555 7899999997
No 7
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=75.97 E-value=3.3 Score=27.91 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=21.8
Q ss_pred eCCceeEEcCCCcCCCCCeeeEEEEEcc
Q psy1999 123 LPNSNVTLNGNMSTDDHGLVSYEWTLRE 150 (177)
Q Consensus 123 lP~~~v~LnGs~StDD~~IvsY~Wt~~~ 150 (177)
.+++.|+|+++. +++.+++|.|.+-+
T Consensus 9 ~~g~~v~f~~~~--~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 9 PTGQPVTFTASS--SDGSPVTYSWDFGD 34 (69)
T ss_dssp BTTSEEEEEETT--TTSSECEEEEE-SS
T ss_pred cCCCEEEEEEEc--cCCCCeEEEEEECC
Confidence 577899999997 78999999999755
No 8
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=75.41 E-value=8.4 Score=43.75 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=53.4
Q ss_pred cceeeEEEecCCCCCceeEEeccccccCCCeEEEEEeeccCCceeeEEEecCCCCCCeeecCCCeEEeeCCceeEEcCCC
Q psy1999 55 RAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPDYPPEANAGSDVILYLPNSNVTLNGNM 134 (177)
Q Consensus 55 l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal~~~~~~~i~CfLv~k~~n~PPvA~AG~D~~v~lP~~~v~LnGs~ 134 (177)
.++|+|+- .|||.+-.+ ..+..-.|.+ ..-.|+++....+..+ .+..+|.+....
T Consensus 1057 ~~~G~YTV-------tLtVsN~~~--~it~~i~VsV---------------~~~~p~v~~~~~p~~~-~~g~tv~F~~~s 1111 (2740)
T TIGR00864 1057 AAPGEYLA-------TVLASNAFE--NISQQINMSV---------------RAILPRVAIGTEDGLL-LAGKPADFEAHP 1111 (2740)
T ss_pred CCCCcEEE-------EEEEEcCCC--ccceEEEEEE---------------ecccceeeeecCcccc-cCCceEEEeecc
Confidence 47999999 999999876 4555555653 2356777777778877 677899999985
Q ss_pred cCCCCCeeeEEEEEcccC
Q psy1999 135 STDDHGLVSYEWTLRESL 152 (177)
Q Consensus 135 StDD~~IvsY~Wt~~~~~ 152 (177)
+.++. .++|.|.+-+|+
T Consensus 1112 s~s~~-~~~y~WdFGDGs 1128 (2740)
T TIGR00864 1112 LPSPG-GIHYEWDFGDGS 1128 (2740)
T ss_pred cCCCC-CcEEEeECCCCC
Confidence 54444 459999998863
No 9
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=65.39 E-value=7.2 Score=26.60 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=22.6
Q ss_pred eCCcceeeEEEecCCCCCceeEEeccccccCCCeEEEE
Q psy1999 52 FGNRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIV 89 (177)
Q Consensus 52 l~~l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVa 89 (177)
..-.++|+|++ .|+++|-.+ |....+-.|.
T Consensus 51 ~~y~~~G~y~v-------~l~v~d~~g-~~~~~~~~V~ 80 (81)
T cd00146 51 HTYTKPGTYTV-------TLTVTNAVG-SSSTKTTTVV 80 (81)
T ss_pred EEcCCCcEEEE-------EEEEEeCCC-CEEEEEEEEE
Confidence 34468999999 999999988 6665555554
No 10
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=63.10 E-value=23 Score=23.89 Aligned_cols=27 Identities=30% Similarity=0.619 Sum_probs=20.4
Q ss_pred CCceeEEcCCCcCCCCCeeeEEEEEccc
Q psy1999 124 PNSNVTLNGNMSTDDHGLVSYEWTLRES 151 (177)
Q Consensus 124 P~~~v~LnGs~StDD~~IvsY~Wt~~~~ 151 (177)
+...+.|+...+.+ +.+++|+|.+-++
T Consensus 13 ~~~~v~f~~~~~~~-~~~~~~~W~fgdg 39 (79)
T smart00089 13 AGESVTFTATSSDD-GSIVSYTWDFGDG 39 (79)
T ss_pred CCCEEEEEEECCCC-CCeEEEEEEeCCC
Confidence 34577888776665 8899999997554
No 11
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=59.76 E-value=5.5 Score=26.87 Aligned_cols=31 Identities=32% Similarity=0.808 Sum_probs=25.4
Q ss_pred ceeEEeccccccCCCeEEEEEeeccCCceeeEEEe
Q psy1999 70 PMTVEQCVQTCCNDESCNIVFMYRAEGKINCFLVT 104 (177)
Q Consensus 70 ~lTV~DCvgaCC~~~~CNVal~~~~~~~i~CfLv~ 104 (177)
..++.||...|=+++.|-+|... .-.|+|++
T Consensus 19 ~~sw~~Cv~~C~~~~~C~la~~~----~~~C~~y~ 49 (71)
T PF08277_consen 19 NTSWDDCVQKCYNDENCVLAYFD----SGKCYLYN 49 (71)
T ss_pred CCCHHHHhHHhCCCCEEEEEEeC----CCCEEEEE
Confidence 56899999999999999999643 22499995
No 12
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=58.40 E-value=22 Score=23.25 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=17.4
Q ss_pred eeeeCCcceeeEEEecCCCCCceeEEecccc
Q psy1999 49 YVPFGNRAAGNFTKVVPEEGLPMTVEQCVQT 79 (177)
Q Consensus 49 ~lpl~~l~aG~Ytf~~~~~~~~lTV~DCvga 79 (177)
.+...++.||+|+| .+.++|-.+.
T Consensus 30 ~~~~~~L~~G~Y~l-------~V~a~~~~~~ 53 (66)
T PF07495_consen 30 SISYTNLPPGKYTL-------EVRAKDNNGK 53 (66)
T ss_dssp EEEEES--SEEEEE-------EEEEEETTS-
T ss_pred EEEEEeCCCEEEEE-------EEEEECCCCC
Confidence 45677899999999 8888887774
No 13
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=50.32 E-value=36 Score=32.56 Aligned_cols=35 Identities=6% Similarity=0.088 Sum_probs=29.1
Q ss_pred eeeeCCcceeeEEEecCCCCCceeEEeccccccCCCeEEEEE
Q psy1999 49 YVPFGNRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVF 90 (177)
Q Consensus 49 ~lpl~~l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal 90 (177)
.+++.+.+||.|.+ +++++|..|....+.+-++.|
T Consensus 370 tL~Ls~~~AG~y~L-------vv~~t~~dG~~~~q~~~~~~v 404 (478)
T PRK13211 370 SLDLSKLKAGHHML-------VVKAKPKDGELIKQQTLDFML 404 (478)
T ss_pred EEecccCCCceEEE-------EEEEEeCCCceeeeeeEEEEE
Confidence 46899999999999 999999999765566766664
No 14
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=32.02 E-value=45 Score=21.88 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=19.2
Q ss_pred ccceeeeeeeCCcceeeEEEecCCCCCceeEEecc
Q psy1999 43 PKKFVGYVPFGNRAAGNFTKVVPEEGLPMTVEQCV 77 (177)
Q Consensus 43 ~~~f~~~lpl~~l~aG~Ytf~~~~~~~~lTV~DCv 77 (177)
.+.+.+ .|-...++|.|+| .++++|-.
T Consensus 22 tG~isG-tp~~~~~~G~y~~-------~vtatd~~ 48 (49)
T PF05345_consen 22 TGTISG-TPTSSVQPGTYTF-------TVTATDGS 48 (49)
T ss_pred CCEEEe-ecCCCccccEEEE-------EEEEEcCC
Confidence 344444 4666778899999 88888854
No 15
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=26.98 E-value=48 Score=26.25 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=16.7
Q ss_pred CcceeeEEEecCCCCCceeEEeccc
Q psy1999 54 NRAAGNFTKVVPEEGLPMTVEQCVQ 78 (177)
Q Consensus 54 ~l~aG~Ytf~~~~~~~~lTV~DCvg 78 (177)
+..||.|.| .++|+|-.|
T Consensus 103 ~a~~G~YH~-------~i~VtD~~G 120 (132)
T PF15418_consen 103 DAPAGDYHF-------MITVTDAAG 120 (132)
T ss_pred CCCCcceEE-------EEEEEECCC
Confidence 789999999 999999988
No 16
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=21.18 E-value=32 Score=21.17 Aligned_cols=20 Identities=25% Similarity=0.795 Sum_probs=14.0
Q ss_pred eEEeccccccCCCeEEEEEee
Q psy1999 72 TVEQCVQTCCNDESCNIVFMY 92 (177)
Q Consensus 72 TV~DCvgaCC~~~~CNVal~~ 92 (177)
+..+|..+|-+.+.|... .+
T Consensus 17 s~~~C~~~C~~~~~C~~~-~~ 36 (51)
T PF14295_consen 17 SPEECQAACAADPGCQAF-TF 36 (51)
T ss_dssp -HHHHHHHHHTSTT--EE-EE
T ss_pred CHHHHHHHccCCCCCCEE-EE
Confidence 668999999999999955 45
No 17
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=20.33 E-value=3.2e+02 Score=19.18 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=34.2
Q ss_pred CCCeeecCCCeEEeeCCceeEEcCCC-cCCCCCeeeEEEEEcc
Q psy1999 109 YPPEANAGSDVILYLPNSNVTLNGNM-STDDHGLVSYEWTLRE 150 (177)
Q Consensus 109 ~PPvA~AG~D~~v~lP~~~v~LnGs~-StDD~~IvsY~Wt~~~ 150 (177)
.+|.++..-.+.|.-|+...+..... .+++.|+.++.|.+-+
T Consensus 30 ~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~ 72 (99)
T PF01835_consen 30 FKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPD 72 (99)
T ss_dssp CSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--S
T ss_pred cccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCC
Confidence 56777666678889999999999998 7899999999999655
Done!