Query psy1999
Match_columns 177
No_of_seqs 127 out of 190
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 21:37:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yrl_A KIAA1837 protein; PKD d 99.5 1.6E-14 5.5E-19 106.9 6.7 68 107-177 3-70 (102)
2 2e7m_A Protein KIAA0319; PKD d 99.3 4.7E-13 1.6E-17 102.9 3.6 70 107-177 10-81 (113)
3 2yhg_A SDE_182CT, cellulose-bi 98.1 3E-06 1E-10 77.4 6.7 66 105-171 328-402 (437)
4 2y72_A Collagenase, collagenas 97.8 1.4E-05 4.6E-10 56.4 3.5 41 110-151 2-43 (85)
5 2y3u_A Collagenase, collagenas 96.9 0.00031 1.1E-08 68.1 2.5 46 105-151 697-743 (785)
6 2c4x_A Endoglucanase, ctcel9D- 96.8 0.00046 1.6E-08 58.7 2.5 46 106-151 5-51 (260)
7 2e7m_A Protein KIAA0319; PKD d 93.5 0.056 1.9E-06 41.3 3.5 35 47-90 69-103 (113)
8 2yrl_A KIAA1837 protein; PKD d 91.5 0.19 6.5E-06 36.3 4.0 31 52-90 63-93 (102)
9 3pdd_A Glycoside hydrolase, fa 88.6 2.3 7.8E-05 33.6 8.4 74 52-148 55-131 (190)
10 2c4x_A Endoglucanase, ctcel9D- 86.9 0.54 1.8E-05 39.8 4.0 31 52-90 63-93 (260)
11 2y72_A Collagenase, collagenas 80.8 1.2 3.9E-05 30.7 2.9 29 54-90 55-83 (85)
12 2vkw_A Neural cell adhesion mo 64.0 40 0.0014 24.7 8.4 51 126-177 124-176 (209)
13 1b4r_A Protein (PKD1_human); P 61.3 5.3 0.00018 28.0 2.6 34 115-152 4-37 (80)
14 1bpv_A Titin, A71, connectin; 59.6 23 0.00079 24.7 5.8 67 109-177 9-79 (112)
15 3lpw_A A77-A78 domain from tit 58.3 46 0.0016 23.5 9.0 52 125-177 116-169 (197)
16 2kzw_A Uncharacterized protein 45.3 14 0.00046 28.5 2.8 42 106-151 57-98 (145)
17 2jll_A NCAM2, neural cell adhe 43.0 1.2E+02 0.0042 23.9 10.3 52 125-177 306-360 (389)
18 3p4l_A Neogenin; iron homeosta 42.8 95 0.0033 22.6 9.3 51 127-177 123-177 (211)
19 3f7q_A Integrin beta-4, GP150; 40.4 1.1E+02 0.0039 22.8 11.3 60 118-177 104-171 (234)
20 3fl7_A Ephrin receptor; ATP-bi 40.1 1.8E+02 0.006 26.4 9.7 103 49-177 401-506 (536)
21 2kzw_A Uncharacterized protein 39.2 20 0.00067 27.5 2.8 29 55-92 111-139 (145)
22 1x5x_A Fibronectin type-III do 35.3 94 0.0032 20.4 7.6 55 123-177 19-75 (109)
23 2kpn_A Bacillolysin; solution 33.5 38 0.0013 24.7 3.4 34 51-92 52-85 (103)
24 1k85_A Chitinase A1; fibronect 33.5 47 0.0016 21.3 3.7 46 125-177 17-62 (88)
25 3pdd_A Glycoside hydrolase, fa 32.4 63 0.0022 25.1 4.9 24 124-148 15-38 (190)
26 1cfb_A Drosophila neuroglian; 27.3 1.8E+02 0.006 21.0 9.4 52 126-177 119-175 (205)
27 2ibg_A CG9211-PA, GH03927P; IH 25.5 1.9E+02 0.0065 20.8 7.2 52 126-177 130-185 (214)
28 2vsd_A CHIR AB1; immune system 23.6 53 0.0018 22.1 2.6 36 109-148 4-39 (105)
29 2y3u_A Collagenase, collagenas 23.5 17 0.00058 35.4 0.0 28 55-90 756-783 (785)
30 3r8q_A Fibronectin; heparin, F 22.2 2.6E+02 0.0089 21.2 10.7 15 163-177 162-176 (290)
31 1wfu_A Unnamed protein product 21.6 2.2E+02 0.0075 20.1 5.9 52 125-177 29-86 (120)
32 3l5i_A Interleukin-6 receptor 21.0 2.7E+02 0.0093 21.0 8.9 52 125-177 210-264 (290)
No 1
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.6e-14 Score=106.86 Aligned_cols=68 Identities=28% Similarity=0.523 Sum_probs=61.3
Q ss_pred CCCCCeeecCCCeEEeeCCceeEEcCCCcCCCCCeeeEEEEEcccCCCCccEEeccCCCCeEEeccCccCC
Q psy1999 107 PDYPPEANAGSDVILYLPNSNVTLNGNMSTDDHGLVSYEWTLRESLNQHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 107 ~n~PPvA~AG~D~~v~lP~~~v~LnGs~StDD~~IvsY~Wt~~~~~~g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
.|+||+|+||.|+++.+|.+.|+|+|++|+||++|++|+|++.+ |+..+.+...+.+.+.++.+++|+
T Consensus 3 ~N~~PvA~ag~d~~v~~~~~~v~L~gs~S~DDg~~lsY~W~~~~---Gp~~~~l~~~~~~~~~~t~~~~G~ 70 (102)
T 2yrl_A 3 SGSSGQADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQ---GPDGVQLENANSSVATVTGLQVGT 70 (102)
T ss_dssp CCCCCSCCCCSCEEEETTCCEEEEECCTTCSSSCBCCCCEEEEE---SCTTCEEESTTSSEEEEESCCSSE
T ss_pred CCCCCEEEeCCCcEEecCCeEEEEEeEeccCCCCeEEEEEEECC---CCceeEEccCCCccEEEECCCCeE
Confidence 58999999999999999999999999999999999999999988 455688888888899999888873
No 2
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.7e-13 Score=102.89 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=62.2
Q ss_pred CCCCCeeecCCCeEEeeCCceeEEcCCCcCCCC--CeeeEEEEEcccCCCCccEEeccCCCCeEEeccCccCC
Q psy1999 107 PDYPPEANAGSDVILYLPNSNVTLNGNMSTDDH--GLVSYEWTLRESLNQHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 107 ~n~PPvA~AG~D~~v~lP~~~v~LnGs~StDD~--~IvsY~Wt~~~~~~g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
..++++..||.|++|+||.|.|+|+|..+.||. .|.+|+|+++++. .+..+.|++.+..+|+||+|+||.
T Consensus 10 ~~k~l~Vsag~~~~i~LP~n~v~L~a~v~pd~~~~~~ysyeWtli~gP-~d~~~~~~~~~~~tlkLS~L~eG~ 81 (113)
T 2e7m_A 10 TVKELTVSAGDNLIITLPDNEVELKAFVAPAPPVETTYNYEWNLISHP-TDYQGEIKQGHKQTLNLSQLSVGL 81 (113)
T ss_dssp CCEECEEECCSCEEEETTCCCEEEECEEESCCCSSCCCCCBCCEEECC-TTCCCCCCTTSSSEEEECSCCSEE
T ss_pred cccccEEEcCCCeEEECCCCcEEEEEEECCCCCCCCEEeeEEEEecCC-CCCceEEecCCCCeeEecCcCcEE
Confidence 356789999999999999999999999999974 4999999999953 256899999999999999999994
No 3
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=98.14 E-value=3e-06 Score=77.36 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=51.0
Q ss_pred cCCCCCCeee-cCC------CeEEeeCCceeEEcCCCcCC-CCCeeeEEEEEcccCCC-CccEEeccCCCCeEEec
Q psy1999 105 KVPDYPPEAN-AGS------DVILYLPNSNVTLNGNMSTD-DHGLVSYEWTLRESLNQ-HKPVDMQKSKTPYLQLS 171 (177)
Q Consensus 105 k~~n~PPvA~-AG~------D~~v~lP~~~v~LnGs~StD-D~~IvsY~Wt~~~~~~g-~~~V~m~~~~~~~l~LS 171 (177)
...|+||+|+ +|. ++++ .++++|+|+|++|+| |+.+.+|.|++..+... ...|.+.+.+.+.+.++
T Consensus 328 ~~aNhaPVa~iag~~g~~p~~~~v-~aG~tVtLdAs~SsDPDGD~LtY~W~q~~g~g~~~~~vtls~~~~~~~sft 402 (437)
T 2yhg_A 328 SAANHHPVPVVNNDANEAVMYLNA-SAGSTVSLDASGSSDPDGDSLNYSWSHYGEADSYSGSVSISNSSSASANVQ 402 (437)
T ss_dssp GGSCCCCBCCBTTBCCSSCEEEEE-CTTCEEEEECTTCBCTTCCCEEEEEEECTTTSSCCSCCCEETTTSSEEEEE
T ss_pred ccCCCCCEEEecCCCcccccceEe-cCCCEEEEEeeeeeCCCCCeEEEEEEEeCCCCccccceEeecCCCceEEEE
Confidence 4679999999 787 7888 799999999999999 99999999998774211 13666665555555554
No 4
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=97.80 E-value=1.4e-05 Score=56.43 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=36.2
Q ss_pred CCeeecCCCeEEeeCCceeEEcCCCcCC-CCCeeeEEEEEccc
Q psy1999 110 PPEANAGSDVILYLPNSNVTLNGNMSTD-DHGLVSYEWTLRES 151 (177)
Q Consensus 110 PPvA~AG~D~~v~lP~~~v~LnGs~StD-D~~IvsY~Wt~~~~ 151 (177)
||+|+++.+..+ .....|+|+|+.|.| |+.|++|.|.+-+|
T Consensus 2 ~Pva~~~~~~~~-~~~~~v~f~~~~s~d~~g~~~~y~W~fgdG 43 (85)
T 2y72_A 2 GTIAKVTGPSTG-AVGRNIEFSGKDSKDEDGKIVSYDWDFGDG 43 (85)
T ss_dssp CCBCCCEEESEE-ETTCEEEEECTTCBCTTSCEEEEEEECSSS
T ss_pred CCEEEEeCCCcc-CCCcEEEEEEecccCCCCCEEEEEEEECCC
Confidence 899999998888 567899999999988 78899999998664
No 5
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*
Probab=96.93 E-value=0.00031 Score=68.11 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=0.0
Q ss_pred cCCCCCCeeecCCCeEEeeCCceeEEcCCCcCC-CCCeeeEEEEEccc
Q psy1999 105 KVPDYPPEANAGSDVILYLPNSNVTLNGNMSTD-DHGLVSYEWTLRES 151 (177)
Q Consensus 105 k~~n~PPvA~AG~D~~v~lP~~~v~LnGs~StD-D~~IvsY~Wt~~~~ 151 (177)
...|.||+|+++.+..+ .+..+|+|+|+.|+| |+.|++|.|.+-+|
T Consensus 697 ~~~N~~PvA~f~~~~sg-~~p~tV~F~gs~SsD~dG~i~sY~WdFGDG 743 (785)
T 2y3u_A 697 ISNNKAPIAKVTGPSTG-AVGRNIEFSGKDSKDEDGKIVSYDWDFGDG 743 (785)
T ss_dssp ------------------------------------------------
T ss_pred ccCCCCCceEEeCCccc-CCCceEEEecccccCCCCCEEEEEEEeCCC
Confidence 35699999999999888 455789999999987 88899999998775
No 6
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate BI module, beta-sandwich proteins, cellulosome; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=96.83 E-value=0.00046 Score=58.71 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCCCCCeeecCCCeEEeeCCceeEEcCCCcCC-CCCeeeEEEEEccc
Q psy1999 106 VPDYPPEANAGSDVILYLPNSNVTLNGNMSTD-DHGLVSYEWTLRES 151 (177)
Q Consensus 106 ~~n~PPvA~AG~D~~v~lP~~~v~LnGs~StD-D~~IvsY~Wt~~~~ 151 (177)
..|.||+|++..+.....+..+|+|+++.|+| |+.|++|.|.+-+|
T Consensus 5 ~~N~~PvA~ft~~~~~g~~~~tV~F~~s~StD~dG~i~sy~WdFGDG 51 (260)
T 2c4x_A 5 PENQAPKAIFTFSPEDPVTDENVVFNASNSIDEDGTIAYYVWDFGDG 51 (260)
T ss_dssp CCCCCCBCCCEEESSSCBTTCCEEEECTTCBCSSSCEEEEEEECSSS
T ss_pred CCCCCCEEEEEecccccCCCcEEEEEeccccCCCCCEEEEEEEeCCC
Confidence 56999999998765433677899999999988 88899999998664
No 7
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.52 E-value=0.056 Score=41.27 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=31.2
Q ss_pred eeeeeeCCcceeeEEEecCCCCCceeEEeccccccCCCeEEEEE
Q psy1999 47 VGYVPFGNRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVF 90 (177)
Q Consensus 47 ~~~lpl~~l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal 90 (177)
...+.|.+|++|.|+| +|||+|..+ -.+...||+|
T Consensus 69 ~~tlkLS~L~eG~Y~F-------qltVtd~~~--~ge~~vnVTV 103 (113)
T 2e7m_A 69 KQTLNLSQLSVGLYVF-------KVTVSSENA--FGEGFVNVTV 103 (113)
T ss_dssp SSEEEECSCCSEEEEE-------CCEEEETTE--EEECCEEEEE
T ss_pred CCeeEecCcCcEEEEE-------EEEEECCCC--CccceEEEEE
Confidence 4678999999999999 999999998 5788899995
No 8
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.48 E-value=0.19 Score=36.33 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=25.7
Q ss_pred eCCcceeeEEEecCCCCCceeEEeccccccCCCeEEEEE
Q psy1999 52 FGNRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVF 90 (177)
Q Consensus 52 l~~l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal 90 (177)
+...++|.|+| +|||+|..+ ..++...+|.|
T Consensus 63 ~t~~~~G~y~f-------~LTVtD~~G-~s~s~~v~VtV 93 (102)
T 2yrl_A 63 VTGLQVGTYVF-------TLTVKDERN-LQSQSSVNVIV 93 (102)
T ss_dssp EESCCSSEEEE-------EEEEEBTTC-CEEEEEEEEEE
T ss_pred EECCCCeEEEE-------EEEEEeCCC-CEEEeEEEEEE
Confidence 44568999999 999999999 57777888884
No 9
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=88.63 E-value=2.3 Score=33.60 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=49.2
Q ss_pred eCCcceeeEEEecCCCCCceeEEeccccccCCCeEEEEEeeccCCceeeEEEecCCCCCCeeecC---CCeEEeeCCcee
Q psy1999 52 FGNRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPDYPPEANAG---SDVILYLPNSNV 128 (177)
Q Consensus 52 l~~l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal~~~~~~~i~CfLv~k~~n~PPvA~AG---~D~~v~lP~~~v 128 (177)
...+.+|.|++ ..+.+|-.|.-..+...+|.+ .. +.||..... ....+ .....+
T Consensus 55 ~~~~~~G~htl-------ta~A~D~aGn~s~s~~v~vtV-------------~~--~~~Ptv~itsP~~g~~~-~~~~~v 111 (190)
T 3pdd_A 55 ITGAAVGAYNL-------KAVAVLSDGRRIESPVTPVLV-------------KV--IVKPTVKLTAPKSNVVA-YGNEFL 111 (190)
T ss_dssp ECSCCSEEEEE-------EEEEEETTSCEEECCCEEEEE-------------EC--CCCCEEEEEECCTTCCC-BTTSEE
T ss_pred eccCCCccEEE-------EEEEEECCCCEeeecceeEEe-------------cc--CCCCceeecCCCCCcEE-ecCCeE
Confidence 34467899999 889999999654555567773 22 777865311 11122 134578
Q ss_pred EEcCCCcCCCCCeeeEEEEE
Q psy1999 129 TLNGNMSTDDHGLVSYEWTL 148 (177)
Q Consensus 129 ~LnGs~StDD~~IvsY~Wt~ 148 (177)
+|.++.+.+|++|.+|+|.+
T Consensus 112 tl~~~AsD~~g~V~~Ve~~~ 131 (190)
T 3pdd_A 112 KITATASDSDGKISRVDFLV 131 (190)
T ss_dssp EEEEEEECSSSCEEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEEE
Confidence 88898886677799999883
No 10
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate BI module, beta-sandwich proteins, cellulosome; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=86.94 E-value=0.54 Score=39.75 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=24.7
Q ss_pred eCCcceeeEEEecCCCCCceeEEeccccccCCCeEEEEE
Q psy1999 52 FGNRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVF 90 (177)
Q Consensus 52 l~~l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal 90 (177)
..-.++|+|++ +|||+|..| |.++....|.|
T Consensus 63 htY~~~GtYtV-------tLTVtD~~G-~s~t~t~~ItV 93 (260)
T 2c4x_A 63 YKYKNPGTYKV-------KLIVTDNQG-ASSSFTATIKV 93 (260)
T ss_dssp ECCSSCEEEEE-------EEEEEETTS-CEEEEEEEEEE
T ss_pred EEeCCCEEEEE-------EEEEEeCCC-CeEEEEEEEEE
Confidence 44458999999 999999999 66666777773
No 11
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=80.80 E-value=1.2 Score=30.73 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=23.7
Q ss_pred CcceeeEEEecCCCCCceeEEeccccccCCCeEEEEE
Q psy1999 54 NRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVF 90 (177)
Q Consensus 54 ~l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal 90 (177)
-.++|+|++ +|+|+|..+ |..+....|.|
T Consensus 55 y~~~G~Y~v-------~LtVtd~~G-~~~t~~~~V~V 83 (85)
T 2y72_A 55 YKKAGTYNV-------TLKVTDDKG-ATATESFTIEI 83 (85)
T ss_dssp CSSCEEEEE-------EEEEEETTS-CEEEEEEEEEE
T ss_pred cCCCeEEEE-------EEEEEECCC-CEEEEEEEEEE
Confidence 448999999 999999999 77777766663
No 12
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=64.02 E-value=40 Score=24.68 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=26.3
Q ss_pred ceeEEcCCCcCC-CCCeeeEEEEEcccCCCC-ccEEeccCCCCeEEeccCccCC
Q psy1999 126 SNVTLNGNMSTD-DHGLVSYEWTLRESLNQH-KPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 126 ~~v~LnGs~StD-D~~IvsY~Wt~~~~~~g~-~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
++|.|.=....| .+.|..|.=....+...- ..+.. ........+.+|++|+
T Consensus 124 ~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t 176 (209)
T 2vkw_A 124 NSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRL-PSGSDHVMLKSLDWNA 176 (209)
T ss_dssp SCEEEEEECCCCTTSCCCEEEEEEEETTSCCCCCEEE-CTTCCEEEECSCCTTC
T ss_pred CeEEEEEECcccCCCCCceEEEEEECCCCCCceeeec-CCCccEEEecCCCCCC
Confidence 455555444433 345777764333221111 22333 2344578999999885
No 13
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=61.30 E-value=5.3 Score=28.03 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=24.3
Q ss_pred cCCCeEEeeCCceeEEcCCCcCCCCCeeeEEEEEcccC
Q psy1999 115 AGSDVILYLPNSNVTLNGNMSTDDHGLVSYEWTLRESL 152 (177)
Q Consensus 115 AG~D~~v~lP~~~v~LnGs~StDD~~IvsY~Wt~~~~~ 152 (177)
.|++..+ ..++.|.|+...|. .+.+|.|.+-+|+
T Consensus 4 ~~p~~~~-~~g~~v~F~~~ss~---~~~~y~WdFGDGs 37 (80)
T 1b4r_A 4 VGPHGPL-ASGQLAAFHIAAPL---PVTATRWDFGDGS 37 (80)
T ss_dssp ECCCSCC-BSSEEEEEEEESCS---SCSEEEEECCSSC
T ss_pred cCCCCcc-cCCCeEEEEEecCC---CCCEEEEECCCCC
Confidence 4555555 56788899987654 3779999997753
No 14
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=59.59 E-value=23 Score=24.71 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=38.9
Q ss_pred CCCeeecCCCeEEeeCCceeEEcCCCcCCCCC--eeeEEEEEcccCCCCccEEe--ccCCCCeEEeccCccCC
Q psy1999 109 YPPEANAGSDVILYLPNSNVTLNGNMSTDDHG--LVSYEWTLRESLNQHKPVDM--QKSKTPYLQLSNLELGE 177 (177)
Q Consensus 109 ~PPvA~AG~D~~v~lP~~~v~LnGs~StDD~~--IvsY~Wt~~~~~~g~~~V~m--~~~~~~~l~LSnL~eG~ 177 (177)
.||.+-..+.+.- .=.++|+|.=....+|+| |..|.-+..... ...-..+ .........+.||++|+
T Consensus 9 ~~p~~P~~P~v~~-v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~-~~~w~~~~~~~~~~~~~~v~~L~p~t 79 (112)
T 1bpv_A 9 SPIDPPGKPVPLN-ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLP-NGRWLKANFSNILENEFTVSGLTEDA 79 (112)
T ss_dssp CCCCCCCCCEEEE-EETTEEEEECCCCSCCTTCCCSCCEEEEEETT-SCCCEECCCSCCCSSEEEECSCCSSC
T ss_pred CCCCCCCCCEEEE-eeCCEEEEEECCCCcCCCCcccEEEEEEEECC-CCceEEeecccCccCEEEECCCCCCC
Confidence 4555555554433 445788888776666644 788876644421 1112222 12234588999999885
No 15
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=58.30 E-value=46 Score=23.52 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=29.3
Q ss_pred CceeEEcCCCcCCCC--CeeeEEEEEcccCCCCccEEeccCCCCeEEeccCccCC
Q psy1999 125 NSNVTLNGNMSTDDH--GLVSYEWTLRESLNQHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 125 ~~~v~LnGs~StDD~--~IvsY~Wt~~~~~~g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
.+++.|.=....+++ .|..|.-...... ................+.+|++|+
T Consensus 116 ~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~L~p~t 169 (197)
T 3lpw_A 116 RNSVSLSWEKPEHDGGSRILGYIVEMQTKG-SDKWATCATVKVTEATITGLIQGE 169 (197)
T ss_dssp SSCEEEEECCCSCCTTSCCCEEEEEEEETT-CSCCEEEEEESSSEEEECCCCTTC
T ss_pred CCeEEEEecCCCcCCCCcccEEEEEEEeCC-CCceEEeecccccEEEeCCcCCCC
Confidence 356666666555543 4888875543321 222222223345588999999884
No 16
>2kzw_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina mazei}
Probab=45.34 E-value=14 Score=28.48 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=31.3
Q ss_pred CCCCCCeeecCCCeEEeeCCceeEEcCCCcCCCCCeeeEEEEEccc
Q psy1999 106 VPDYPPEANAGSDVILYLPNSNVTLNGNMSTDDHGLVSYEWTLRES 151 (177)
Q Consensus 106 ~~n~PPvA~AG~D~~v~lP~~~v~LnGs~StDD~~IvsY~Wt~~~~ 151 (177)
..+.+|+|+...+.+--....+|.|... |++. .+|.|.+-+|
T Consensus 57 ~s~~~P~a~Ft~~~~~g~~pl~V~Ftd~-S~~~---~s~~WdFGDG 98 (145)
T 2kzw_A 57 SSPVLPTARFTSDITEGFAPLSVRFKDF-SENA---TSRLWMFGDG 98 (145)
T ss_dssp CCCCCCBCCEECSCSEEECCSCEECEEC-CBSC---SEEEECCSSS
T ss_pred cCCcCCcceeeeecccccccccCEEEcC-CCCC---ceEEEEcCCC
Confidence 5678999999888765455678899875 4442 3999998775
No 17
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=43.02 E-value=1.2e+02 Score=23.88 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=27.2
Q ss_pred CceeEEcCCCcCCC-CCeeeEEEEEcccCCCCc--cEEeccCCCCeEEeccCccCC
Q psy1999 125 NSNVTLNGNMSTDD-HGLVSYEWTLRESLNQHK--PVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 125 ~~~v~LnGs~StDD-~~IvsY~Wt~~~~~~g~~--~V~m~~~~~~~l~LSnL~eG~ 177 (177)
.++++|.=....|. +.|..|.........+.- ..... .......|.+|++|+
T Consensus 306 ~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~t 360 (389)
T 2jll_A 306 GKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQ-GNKDHIILEHLQWTM 360 (389)
T ss_dssp TTEEEEEECCCCCCSSCCCEEEEEEEC-----CCBCCEEC-TTCCEEEECSCCTTC
T ss_pred CCEEEEEEECCCCCCCcccEEEEEEEeCCCCcceeEeecc-CCcceEEeCCcCCCC
Confidence 34566655544443 347888876544211111 22232 334578899999874
No 18
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A
Probab=42.75 E-value=95 Score=22.60 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=25.1
Q ss_pred eeEEcCCCcCC-CCCeeeEEEEEcccCCCCc---cEEeccCCCCeEEeccCccCC
Q psy1999 127 NVTLNGNMSTD-DHGLVSYEWTLRESLNQHK---PVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 127 ~v~LnGs~StD-D~~IvsY~Wt~~~~~~g~~---~V~m~~~~~~~l~LSnL~eG~ 177 (177)
++.|.=....+ ++.|..|.=.......... ....-........|.+|++|+
T Consensus 123 sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 177 (211)
T 3p4l_A 123 TIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDT 177 (211)
T ss_dssp EEEEEEECCTTCCSCCCEEEEEEESCTTSCGGGSEEEEEESSCSEEEECCCCTTC
T ss_pred EEEEEECCCCCCCCCEEEEEEEEEECCCCCCCceEEEEecCCeeEEEEcCCCCCC
Confidence 45554444333 3457777533322111111 112122344588999999874
No 19
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Probab=40.41 E-value=1.1e+02 Score=22.79 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=30.0
Q ss_pred CeEEe-eCCceeEEcCCCcCC-CCCeeeEEEEEcccCCCC------ccEEeccCCCCeEEeccCccCC
Q psy1999 118 DVILY-LPNSNVTLNGNMSTD-DHGLVSYEWTLRESLNQH------KPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 118 D~~v~-lP~~~v~LnGs~StD-D~~IvsY~Wt~~~~~~g~------~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
++.+. .-.+++.|.=....+ ++.|..|.=......... ..+...........++||++|+
T Consensus 104 ~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 171 (234)
T 3f7q_A 104 RLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQ 171 (234)
T ss_dssp CCEEEECSSSCEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBSSCCEECCCSCTTCCEEEEECCCTTC
T ss_pred ccEEEEecCCEEEEEEcCCCCCCCceeEEEEEEEECCCCCCccCcceEEEecCCcceEEEeCCCCCCC
Confidence 44443 333566676665545 345777753322210011 1122223334489999999884
No 20
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=40.06 E-value=1.8e+02 Score=26.45 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=49.8
Q ss_pred eeeeCCcceee-EEEecCCCCCceeEEecccccc-CCCeEEEEEeeccCCceeeEEEecCCCCCCeeecCCCeEEeeCCc
Q psy1999 49 YVPFGNRAAGN-FTKVVPEEGLPMTVEQCVQTCC-NDESCNIVFMYRAEGKINCFLVTKVPDYPPEANAGSDVILYLPNS 126 (177)
Q Consensus 49 ~lpl~~l~aG~-Ytf~~~~~~~~lTV~DCvgaCC-~~~~CNVal~~~~~~~i~CfLv~k~~n~PPvA~AG~D~~v~lP~~ 126 (177)
...+.+|+||+ |+| ++......+.-. ....-.+. +.-....|+.... ...-.+
T Consensus 401 s~tI~gL~P~T~Y~f-------rV~A~N~~G~~sps~~s~~v~-------------v~T~~~~Ps~~~~-----~~~s~t 455 (536)
T 3fl7_A 401 SVTVSDLEPHMNYTF-------TVEARNGVSGLVTSRSFRTAS-------------VSINQTEPPKVRL-----EGRSTT 455 (536)
T ss_dssp EEEEECCCTTCEEEE-------EEEEECTTGGGCSCCCEEEEE-------------EECCSCCCCEEEE-----EECCC-
T ss_pred eeEeCCCCCCCEEEE-------EEEEEecCCCCCCCCccceeE-------------EeecccCCCCCce-----eeccCC
Confidence 34578888885 888 666666666211 12233333 2222222322211 112234
Q ss_pred eeEEcCCCcCC-CCCeeeEEEEEcccCCCCccEEeccCCCCeEEeccCccCC
Q psy1999 127 NVTLNGNMSTD-DHGLVSYEWTLRESLNQHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 127 ~v~LnGs~StD-D~~IvsY~Wt~~~~~~g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
+|+|.=....+ .+.|..|.=.............+ ........|++|++|+
T Consensus 456 SV~LsW~pP~~~ng~I~~Y~V~y~~~~~~~~~~~v-~~~~ts~~l~gL~P~T 506 (536)
T 3fl7_A 456 SLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVR-RTEGFSVTLDDLAPDT 506 (536)
T ss_dssp CCEEEEECCTTTTTTCSEEEEEEEEC--CCCCEEE-EESSSEEECCSCCSSC
T ss_pred eEEEEEECCcCCCCcccEEEEEEEECCCCceEEEE-cCCCCEEEECCCCCCC
Confidence 55554444434 34577776443321111122222 3445689999999885
No 21
>2kzw_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina mazei}
Probab=39.21 E-value=20 Score=27.55 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=22.1
Q ss_pred cceeeEEEecCCCCCceeEEeccccccCCCeEEEEEee
Q psy1999 55 RAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVFMY 92 (177)
Q Consensus 55 l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal~~ 92 (177)
..||+|+. +|||+|-.| |.+..-.+.++|
T Consensus 111 ~~~G~YtV-------tLtvtn~~G--~~~~t~~~~i~~ 139 (145)
T 2kzw_A 111 FNEGEYIV-------SLIVSNEND--SDSASVTIRALE 139 (145)
T ss_dssp SSCEEEEE-------EEEEECSSC--EEEEEEEEEEEC
T ss_pred CCCcEEEE-------EEEEEcCCC--CeeEEEeeeeee
Confidence 37999999 999999999 455555555544
No 22
>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=35.30 E-value=94 Score=20.39 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=32.4
Q ss_pred eCCceeEEcCCCcCCCCC--eeeEEEEEcccCCCCccEEeccCCCCeEEeccCccCC
Q psy1999 123 LPNSNVTLNGNMSTDDHG--LVSYEWTLRESLNQHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 123 lP~~~v~LnGs~StDD~~--IvsY~Wt~~~~~~g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
.=.++|+|.=....++++ |..|.=+......+...............+.+|++|+
T Consensus 19 ~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t 75 (109)
T 1x5x_A 19 AGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRST 75 (109)
T ss_dssp ECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSC
T ss_pred ccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEeCCccEEEECCCCCCC
Confidence 345678888777777766 7888755444211111221222234588999999874
No 23
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=33.51 E-value=38 Score=24.69 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=26.6
Q ss_pred eeCCcceeeEEEecCCCCCceeEEeccccccCCCeEEEEEee
Q psy1999 51 PFGNRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVFMY 92 (177)
Q Consensus 51 pl~~l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal~~ 92 (177)
.++-.++|.|+- .++|+|..| -..+...+|.|.+
T Consensus 52 ~Vdt~k~G~Y~V-------tY~VtDs~G-n~~t~trtVtV~~ 85 (103)
T 2kpn_A 52 EVDTTKAGTYVL-------TYTVTDSKG-HEVTAKQTVTVKV 85 (103)
T ss_dssp CCCSSSCEEEEE-------EEEEECTTS-CEEEEEEEEEEEC
T ss_pred cccCCCceEEEE-------EEEEEcCCC-CEEEEEEEEEEeC
Confidence 356679999999 999999999 4556677788533
No 24
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1
Probab=33.46 E-value=47 Score=21.32 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=28.1
Q ss_pred CceeEEcCCCcCCCCCeeeEEEEEcccCCCCccEEeccCCCCeEEeccCccCC
Q psy1999 125 NSNVTLNGNMSTDDHGLVSYEWTLRESLNQHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 125 ~~~v~LnGs~StDD~~IvsY~Wt~~~~~~g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
..+|.|.=..+.|+++|..|.=. .. +. .+ . ........+++|++|+
T Consensus 17 ~~sv~L~W~~~~~~~~i~~Y~v~-~~---~~-~~-~-~~~~~~~~~~~L~~~t 62 (88)
T 1k85_A 17 TSSITLSWTASTDNVGVTGYDVY-NG---TA-LA-T-TVTGTTATISGLAADT 62 (88)
T ss_dssp SSCEEEEEECCSCCSSEEEEEEE-ES---SS-EE-E-EESSSEEEECCCCSSC
T ss_pred CCEEEEEECCCCCCCCccEEEEE-EC---CE-EE-e-ecCCCEEEeCCCCCCC
Confidence 45677776666777778888743 22 22 12 1 2233577889998874
No 25
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=32.37 E-value=63 Score=25.11 Aligned_cols=24 Identities=4% Similarity=0.199 Sum_probs=20.5
Q ss_pred CCceeEEcCCCcCCCCCeeeEEEEE
Q psy1999 124 PNSNVTLNGNMSTDDHGLVSYEWTL 148 (177)
Q Consensus 124 P~~~v~LnGs~StDD~~IvsY~Wt~ 148 (177)
.+..|+|.++.+ ||++|.+|+|..
T Consensus 15 ~g~~vtv~~~As-~d~~V~~Ve~~~ 38 (190)
T 3pdd_A 15 AGKDINISATVK-SKTPVSKVEFYN 38 (190)
T ss_dssp TTSCEEEEEEEC-CSSCEEEEEEEE
T ss_pred CCCeEEEEEEEe-CCCCEEEEEEEE
Confidence 455789999999 999999999983
No 26
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Probab=27.31 E-value=1.8e+02 Score=21.00 Aligned_cols=52 Identities=6% Similarity=0.061 Sum_probs=28.0
Q ss_pred ceeEEcCCCcC--C-CCCeeeEE--EEEcccCCCCccEEeccCCCCeEEeccCccCC
Q psy1999 126 SNVTLNGNMST--D-DHGLVSYE--WTLRESLNQHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 126 ~~v~LnGs~St--D-D~~IvsY~--Wt~~~~~~g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
+++.|.=..-. + .+.|..|. |........-..+...........|.+|++|+
T Consensus 119 ~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 175 (205)
T 1cfb_A 119 NNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFV 175 (205)
T ss_dssp TCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSC
T ss_pred CeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEEEEecCCCccEEEEcCCCCCc
Confidence 46677655544 3 34577776 33222110012333433345689999999884
No 27
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A
Probab=25.54 E-value=1.9e+02 Score=20.82 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=26.7
Q ss_pred ceeEEcCCCcCC--CCCeeeEEEEEcccCC--CCccEEeccCCCCeEEeccCccCC
Q psy1999 126 SNVTLNGNMSTD--DHGLVSYEWTLRESLN--QHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 126 ~~v~LnGs~StD--D~~IvsY~Wt~~~~~~--g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
++|.|.=....+ .+.|..|.=....... ....+.....+.....+.+|++|+
T Consensus 130 ~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 185 (214)
T 2ibg_A 130 TAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETAT 185 (214)
T ss_dssp SCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTC
T ss_pred CeEEEEEeCCCccCCCCcceEEEEEEECCCCcceEEeeccCCcceEEEeCCCCCCC
Confidence 345555444432 3456666533222111 123344444344588999999885
No 28
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=23.55 E-value=53 Score=22.11 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=24.3
Q ss_pred CCCeeecCCCeEEeeCCceeEEcCCCcCCCCCeeeEEEEE
Q psy1999 109 YPPEANAGSDVILYLPNSNVTLNGNMSTDDHGLVSYEWTL 148 (177)
Q Consensus 109 ~PPvA~AG~D~~v~lP~~~v~LnGs~StDD~~IvsY~Wt~ 148 (177)
.+|...+.+..+| .++++|+|.=..+. ....|.|..
T Consensus 4 ~kP~i~~~p~~~v-~~G~~VtL~C~~~~---~~~~~~w~k 39 (105)
T 2vsd_A 4 PQPSLSLHPSQGV-SLGDTVTLRCHLPR---MAAWVQLWL 39 (105)
T ss_dssp CCCEEEEESCSSC-CTTCEEEEEEECCS---SCEEEEEEE
T ss_pred CCCEEEeCCCCCc-CcCCCEEEEEEcCC---CCcEEEEEE
Confidence 3577777776666 78899999654432 236788873
No 29
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*
Probab=23.48 E-value=17 Score=35.37 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred cceeeEEEecCCCCCceeEEeccccccCCCeEEEEE
Q psy1999 55 RAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVF 90 (177)
Q Consensus 55 l~aG~Ytf~~~~~~~~lTV~DCvgaCC~~~~CNVal 90 (177)
..+|+|++ +|||+|-.| +.++.+.+|.|
T Consensus 756 ~~~GtYtV-------tLTVTD~~G-~sst~t~tVtV 783 (785)
T 2y3u_A 756 KKAGTYNV-------TLKVTDDKG-ATATESFTIEI 783 (785)
T ss_dssp ------------------------------------
T ss_pred cCCeEEEE-------EEEEEECCC-CeEEEEEEEEe
Confidence 48999999 999999999 67777777763
No 30
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=22.19 E-value=2.6e+02 Score=21.22 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=11.5
Q ss_pred CCCCeEEeccCccCC
Q psy1999 163 SKTPYLQLSNLELGE 177 (177)
Q Consensus 163 ~~~~~l~LSnL~eG~ 177 (177)
.......++||++|+
T Consensus 162 ~~~~~~~i~~L~p~t 176 (290)
T 3r8q_A 162 PDVRSYTITGLQPGT 176 (290)
T ss_dssp TTCSEEEECSCCTTC
T ss_pred CCccEEEECCCCCCC
Confidence 344588999999884
No 31
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=21.56 E-value=2.2e+02 Score=20.13 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=31.7
Q ss_pred CceeEEcCCCcCCCC-----C-eeeEEEEEcccCCCCccEEeccCCCCeEEeccCccCC
Q psy1999 125 NSNVTLNGNMSTDDH-----G-LVSYEWTLRESLNQHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 125 ~~~v~LnGs~StDD~-----~-IvsY~Wt~~~~~~g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
.++|+|.=....||+ . |..|.=+..+. ....-..+.........+.+|++|+
T Consensus 29 ~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~-~~~~~~~v~~~~~t~~~v~gL~p~t 86 (120)
T 1wfu_A 29 HHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDP-KMHSYGVIYTGYATRHVVEGLEPRT 86 (120)
T ss_dssp TTEEEEECTTTSCSCCCSCGGGCCEEEEEEECT-TTCCEEEEEEESCSEEEEESCCTTC
T ss_pred CCEEEEEECCCccCCccCCCCceEEEEEEEecC-CCCceEEEecCCccEEEECCCCCCC
Confidence 578899877777765 2 88998663331 1222222222223468999999885
No 32
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=21.01 E-value=2.7e+02 Score=20.98 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=26.9
Q ss_pred CceeEEcCCC--cCC-CCCeeeEEEEEcccCCCCccEEeccCCCCeEEeccCccCC
Q psy1999 125 NSNVTLNGNM--STD-DHGLVSYEWTLRESLNQHKPVDMQKSKTPYLQLSNLELGE 177 (177)
Q Consensus 125 ~~~v~LnGs~--StD-D~~IvsY~Wt~~~~~~g~~~V~m~~~~~~~l~LSnL~eG~ 177 (177)
.+++.|.=.. ..+ .+.|..|.=...........+.. ........|.+|++|+
T Consensus 210 ~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~~L~p~t 264 (290)
T 3l5i_A 210 KNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNV-DSSHTEYTLSSLTSDT 264 (290)
T ss_dssp SSCEEEEECCCCHHHHSSCCCEEEEEEEETTSCCEEEEE-ETTCSEEEECSCCTTC
T ss_pred CCEEEEEEcCCChhccCCEEEEEEEEEEeCCCCeEEEEe-CCCceEEEeCCCCCCC
Confidence 3566665542 222 44577775433321111222333 3444589999999885
Done!