RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1999
         (177 letters)



>gnl|CDD|129004 smart00765, MANEC, The MANEC domain, formerly called MANSC.  This
           domain, comprising 8 conserved cysteines, is found in
           the N terminus of higher multicellular animal membrane
           and extracellular proteins. It is postulated that this
           domain may play a role in the formation of protein
           complexes involving various protease activators and
           inhibitors. It is possible that some of the cysteine
           residues in the MANSC domain form structurally important
           disulfide bridges. All of the MANSC-containing proteins
           contain predicted transmembrane regions and signal
           peptides. It has been proposed that the MANSC domain in
           HAI-1 might function through binding with hepatocyte
           growth factor activator and matriptase.
          Length = 93

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 72  TVEQCVQTCCNDESCN--IVFMYRAEGKINCFLV 103
           T E CV+ CC+  +CN  +  + R + + NC+L 
Sbjct: 39  TWEDCVRACCSTPNCNLAVFELRREDAEGNCYLF 72


>gnl|CDD|219435 pfam07502, MANEC, MANEC domain.  This region of similarity,
           comprising 8 conserved cysteines, is found in the
           N-terminal region of several membrane-associated and
           extracellular proteins. Although formerly called MANSC
           (for motif at N terminus with seven cysteines) it has
           now been renamed by MANEC (motif at N terminus with
           eight cysteines) by Richard Mitter and Stephen
           Fitzgerald after the discovery of an eighth conserved
           cysteine. It is postulated that this domain may play a
           role in the formation of protein complexes involving
           various protease activators and inhibitors.
          Length = 93

 Score = 30.4 bits (69), Expect = 0.14
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 72  TVEQCVQTCCNDESCNI-VFMYRAEGKI--NCFL 102
           T E CV+ CC+  +CN+ +F  +  GK    C+L
Sbjct: 38  TWEDCVRACCSTPNCNLAIFELQRGGKQPALCYL 71


>gnl|CDD|238533 cd01100, APPLE_Factor_XI_like, Subfamily of PAN/APPLE-like domains;
           present in plasma prekallikrein/coagulation factor XI,
           microneme antigen proteins, and a few prokaryotic
           proteins. PAN/APPLE domains fulfill diverse biological
           functions by mediating protein-protein or
           protein-carbohydrate interactions.
          Length = 73

 Score = 27.4 bits (61), Expect = 1.2
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 72  TVEQCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPDYPPEANAGS 117
           + EQC   C  D  C + F Y  + K  CFL +          A S
Sbjct: 26  SAEQCQAACTADPGC-LAFTYNTKSKK-CFLKSSEGTLTKSTGAVS 69


>gnl|CDD|220124 pfam09139, Mmp37, Mitochondrial matrix Mmp37.  MMp37 is a
           mitochondrial matrix protein that functions in the
           translocation of proteins across the mitochondrial inner
           membrane. It has been shown that MMP37 proteins possess
           the NTase fold but they have only one active site
           carboxylate and thus probably are not able to carry out
           enzymatic reaction. These potentially non-active members
           of NTase fold superfamily may bind ATP, hydrolysis of
           which is necessary for the translocation of proteins
           through the membrane.
          Length = 324

 Score = 26.5 bits (59), Expect = 9.0
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 13/58 (22%)

Query: 125 NSNVTLNGNMSTDDHGLVSYEWTLRESLNQ----------HKPVDMQKSKTPYLQLSN 172
           N  V +NG      +G+VS E TL + L             KPV + K   P ++L+N
Sbjct: 92  NPLVNINGR--LIKYGVVSME-TLLKDLLDWDTLYLAGRLQKPVKVLKPDDPRIRLAN 146


>gnl|CDD|238417 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykinase (PEPCK), a
           critical gluconeogenic enzyme, catalyzes the first
           committed step in the diversion of tricarboxylic acid
           cycle intermediates toward gluconeogenesis. It catalyzes
           the reversible decarboxylation and phosphorylation of
           oxaloacetate to yield phosphoenolpyruvate and carbon
           dioxide, using a nucleotide molecule (GTP) for the
           phosphoryl transfer, and has a strict requirement for
           divalent metal ions for activity. PEPCK's separate into
           two phylogenetic groups based on their nucleotide
           substrate specificity, this model describes the
           GTP-dependent group.
          Length = 579

 Score = 26.4 bits (59), Expect = 9.1
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 47  VGYVPFGNRAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVFMYRAEGKI 98
           +G         G F   +   G P++  Q     CN E   IV  +  E +I
Sbjct: 142 MGKAVLDALGEGEFVPCLHSVGAPLSAGQKDVWPCNPEKKYIV-HFPEEREI 192


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,451,904
Number of extensions: 725477
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 13
Length of query: 177
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 86
Effective length of database: 6,901,388
Effective search space: 593519368
Effective search space used: 593519368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.5 bits)