RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1999
(177 letters)
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 102
Score = 61.0 bits (148), Expect = 5e-13
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 110 PPEANAGSDVILYLPNSNVTLNGNMSTDDHGLVSYEWTL 148
+A+AG D L LP + TL+G+ S+DD ++SY W
Sbjct: 6 SGQADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEK 44
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 113
Score = 49.6 bits (118), Expect = 1e-08
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 104 TKVPDYPPEANAGSDVILYLPNSNVTLNGNMSTDDHG--LVSYEWTLRESLNQHKPVDMQ 161
+AG ++I+ LP++ V L ++ +YEW L ++ +++
Sbjct: 7 GPRTVKELTVSAGDNLIITLPDNEVELKAFVAPAPPVETTYNYEWNLISHPTDYQ-GEIK 65
Query: 162 KSKTPYLQLSNLELG 176
+ L LS L +G
Sbjct: 66 QGHKQTLNLSQLSVG 80
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD
domain, CBM44, carbohydrate BI module, beta-sandwich
proteins, cellulosome; 2.0A {Clostridium thermocellum}
PDB: 2c26_A
Length = 260
Score = 33.9 bits (77), Expect = 0.019
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 102 LVTKVPDYPPEANAGSDVILYLPNSNVTLNGNMSTD-DHGLVSYEWT 147
+ + + P+A + + NV N + S D D + Y W
Sbjct: 1 MASVPENQAPKAIFTFSPEDPVTDENVVFNASNSIDEDGTIAYYVWD 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.026
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 30/127 (23%)
Query: 55 RAAGNFTKVVPEEGLPMTVEQCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPDYPPEAN 114
R + ++++ T DE +++ Y ++C + D P E
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-----LDC----RPQDLPREVL 323
Query: 115 AGSDVILYLPNSNVTLNGNMSTDDHGLVSYEW----------TLRESLNQHKPVDMQKSK 164
+ P +++ D W + SLN +P + +K
Sbjct: 324 TTN------PRR-LSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKM- 374
Query: 165 TPYLQLS 171
+ +LS
Sbjct: 375 --FDRLS 379
Score = 26.7 bits (58), Expect = 4.9
Identities = 25/174 (14%), Positives = 46/174 (26%), Gaps = 42/174 (24%)
Query: 30 KKLLNKEKCTKIY--PKKFVG-YVPF------GNRAAGNFTKVVPEEGLPMTVEQCVQTC 80
K +L+KE+ I G F F + V + ++T
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTE 101
Query: 81 CNDESCNIVFMYRAEGKINCFLVTKVPDY----PPEANAGSDVILYL-PNSNVTLNGNMS 135
S MY + Y +L L P NV ++G +
Sbjct: 102 QRQPSMMTR-MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VL 159
Query: 136 TDDHG-----LVSYEWTLRESLNQHKP----------VDMQKSKTPYLQLSNLE 174
G + + +K ++++ +P L L+
Sbjct: 160 ----GSGKTWVAL------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
>1nl1_A Prothrombin; hydrolase; HET: CGU NAG; 1.90A {Bos taurus} SCOP:
g.14.1.1 g.32.1.1 PDB: 2pf2_A* 2pf1_A* 1nl2_A* 2spt_A*
Length = 147
Score = 29.6 bits (65), Expect = 0.38
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 3/85 (3%)
Query: 66 EEGLPMTVE-QCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPD--YPPEANAGSDVILY 122
EE +E +C++ C+ E + T P E
Sbjct: 7 EEVRKGNLERECLEEPCSREEAFEALESLSATDAFWAKYTACESARNPREKLNECLEGNC 66
Query: 123 LPNSNVTLNGNMSTDDHGLVSYEWT 147
+ GN+S G+ W
Sbjct: 67 AEGVGMNYRGNVSVTRSGIECQLWR 91
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Length = 161
Score = 28.3 bits (62), Expect = 1.1
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 72 TVEQCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPDYPPEANAGS 117
++EQC C + C F Y + K+ C + PD +
Sbjct: 32 SLEQCAAQCKAVDGCTH-FTYNDDSKM-CHVKEGKPDLYDLTGGKT 75
Score = 26.4 bits (57), Expect = 4.9
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 72 TVEQCVQTCCNDESCNIVFMYRAEGKINCFL 102
C C D SC +F Y + C
Sbjct: 105 QSADCQAACAADPSCE-IFTYNEHDQ-KCTF 133
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 28.2 bits (62), Expect = 1.5
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 106 VPDYPPEANAGSDVILYLPNSNVTLNGNMSTD-DHGLVSYEWT 147
VP +AN + S V+L+ + S+D D ++Y W+
Sbjct: 335 VPVVNNDANEAVMYLNASAGSTVSLDASGSSDPDGDSLNYSWS 377
>3mzk_B Protein transport protein SEC16; alpha-helical-stack,
beta-propeller; 2.69A {Saccharomyces cerevisiae}
Length = 441
Score = 28.2 bits (62), Expect = 1.8
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 100 CFLVTKVPDYPPEANAGSDVILYLPNSNVTLNGNMSTDDHGLVSYEWTLRESLNQHKPVD 159
F++ VP A SDVI + T + + YE+
Sbjct: 300 LFIIGNVPLSNEPVMADSDVIFESIGNMNTFESILWDE-----IYEYIFSYDPKFKGFSS 354
Query: 160 MQKSKTPY 167
+ K +
Sbjct: 355 ILPQKIYH 362
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 27.1 bits (61), Expect = 3.3
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 7/26 (26%)
Query: 94 AEGKINCFLVTKVPDYPPEANAGSDV 119
GK+ + E AGSD+
Sbjct: 102 TSGKLAAVGFS-------ERQAGSDL 120
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem
repeat, PAN_AP, P galactose-binding lectin, cellular
adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Length = 138
Score = 26.4 bits (57), Expect = 4.2
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 72 TVEQCVQTCCNDESCNIVFMYRAEGKINCFLVTKVPDYPPEANA 115
+ + C++ C +C+ F Y K C L P++
Sbjct: 30 SAQDCMKECQALPTCSH-FTYNKNSK-KCHLKAGAPEFYTYTGD 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.403
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,528,036
Number of extensions: 136227
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 14
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)