BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy20
         (147 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SSU|A Chain A, Crystal Structure Of Vimentin Coil1a1B FRAGMENT
 pdb|3SSU|B Chain B, Crystal Structure Of Vimentin Coil1a1B FRAGMENT
          Length = 93

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 55 SRRQEKNELKNLNDRLAQYIELVQKLQ 81
          +R  EK EL+ LNDR A YI+ V+ L+
Sbjct: 3  TRTNEKVELQELNDRFANYIDKVRFLE 29


>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
            Human Plcbeta3
 pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
            Human Plcbeta3
          Length = 1235

 Score = 26.6 bits (57), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 21/25 (84%)

Query: 98   HTTEFKKVKAASEKEIEDIRKALDR 122
            +TT+FK++K  +E+E ++++K LDR
Sbjct: 1077 NTTQFKRLKEMNEREKKELQKILDR 1101


>pdb|4GNK|E Chain E, Crystal Structure Of Galphaq In Complex With Full-length
           Human Plcbeta3
          Length = 259

 Score = 26.6 bits (57), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 20/24 (83%)

Query: 99  TTEFKKVKAASEKEIEDIRKALDR 122
           TT+FK++K  +E+E ++++K LDR
Sbjct: 144 TTQFKRLKEMNEREKKELQKILDR 167


>pdb|1GK7|A Chain A, Human Vimentin Coil 1a Fragment (1a)
          Length = 39

 Score = 25.8 bits (55), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 59 EKNELKNLNDRLAQYIELVQKLQ 81
          EK EL+ LNDR A YI+ V+ L+
Sbjct: 4  EKVELQELNDRFANYIDKVRFLE 26


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.121    0.300 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,947,603
Number of Sequences: 62578
Number of extensions: 36810
Number of successful extensions: 54
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 6
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 47 (22.7 bits)