BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy20
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70615|LMNB1_RAT Lamin-B1 OS=Rattus norvegicus GN=Lmnb1 PE=1 SV=3
Length = 587
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%)
Query: 33 PPQPQPQSQPPRPGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLY 92
P Q + S+ P +P SPT +SR QEK EL+ LNDRLA YI+ V+ L+ + ++L+ +
Sbjct: 6 PVQQRAGSRASAPATPFSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVT 65
Query: 93 SIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIE 133
EE E +KA E E+ D R+ALD + ++ L IE
Sbjct: 66 EREEVRGRELTGLKALYETELADARRALDDTARERAKLQIE 106
>sp|P48679|LMNA_RAT Prelamin-A/C OS=Rattus norvegicus GN=Lmna PE=1 SV=1
Length = 665
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 39 QSQPPRPG-----SPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93
Q +P R G +PLSPT I+R QEK +L+ LNDRLA YI+ V+ L+ + A L +
Sbjct: 6 QRRPTRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITE 65
Query: 94 IEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
EE + E +KAA E E+ D RK LD + ++ L +E ++ +E +LK
Sbjct: 66 SEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELK 117
>sp|P20700|LMNB1_HUMAN Lamin-B1 OS=Homo sapiens GN=LMNB1 PE=1 SV=2
Length = 586
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%)
Query: 33 PPQPQPQSQPPRPGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLY 92
P P+ S+ P +PLSPT +SR QEK EL+ LNDRLA YI+ V+ L+ + ++L+ +
Sbjct: 6 PVPPRMGSRAGGPTTPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVT 65
Query: 93 SIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIE 133
EE E +KA E E+ D R+ALD + ++ L IE
Sbjct: 66 EREEVRGRELTGLKALYETELADARRALDDTARERAKLQIE 106
>sp|P14733|LMNB1_MOUSE Lamin-B1 OS=Mus musculus GN=Lmnb1 PE=1 SV=3
Length = 588
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 60/99 (60%)
Query: 35 QPQPQSQPPRPGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSI 94
Q + S+ P +PLSPT +SR QEK EL+ LNDRLA YI+ V+ L+ + ++L+ +
Sbjct: 9 QQRAGSRASAPATPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVTER 68
Query: 95 EESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIE 133
EE E +KA E E+ D R+ALD + ++ L IE
Sbjct: 69 EEVRGRELTGLKALYETELADARRALDDTARERAKLQIE 107
>sp|P02545|LMNA_HUMAN Prelamin-A/C OS=Homo sapiens GN=LMNA PE=1 SV=1
Length = 664
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 61/99 (61%)
Query: 47 SPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVK 106
+PLSPT I+R QEK +L+ LNDRLA YI+ V+ L+ + A L + EE + E +K
Sbjct: 19 TPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIK 78
Query: 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
AA E E+ D RK LD + ++ L +E ++ +E +LK
Sbjct: 79 AAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELK 117
>sp|Q03427|LAMC_DROME Lamin-C OS=Drosophila melanogaster GN=LamC PE=1 SV=2
Length = 621
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 40 SQPPRPG--SPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97
S R G SP SPT SR+QEK EL++LNDRLA YI+ ++ L+N+ + L L +++
Sbjct: 25 STSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDT 84
Query: 98 HTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
E +KA EKE+ RK LD + K+ L I+ +RL +E DLK
Sbjct: 85 VNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLK 132
>sp|P48678|LMNA_MOUSE Prelamin-A/C OS=Mus musculus GN=Lmna PE=1 SV=2
Length = 665
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 61/99 (61%)
Query: 47 SPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVK 106
+PLSPT I+R QEK +L+ LNDRLA YI+ V+ L+ + A L + EE + E +K
Sbjct: 19 TPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIK 78
Query: 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
AA E E+ D RK LD + ++ L +E ++ +E +LK
Sbjct: 79 AAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELK 117
>sp|Q03252|LMNB2_HUMAN Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=3
Length = 600
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 45 PGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQ--KLQNDKASLEYSLYSIEESHTTEF 102
P +PLSPT +SR QEK EL+ LNDRLA YI+ V+ +L+ND+ L+ S EE T E
Sbjct: 12 PATPLSPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLLLKIS--EKEEVTTREV 69
Query: 103 KKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141
+KA E E+ D R+ LD + ++ L IE +L EL
Sbjct: 70 SGIKALYESELADARRVLDETARERARLQIEIGKLRAEL 108
>sp|Q3ZD69|LMNA_PIG Prelamin-A/C OS=Sus scrofa GN=LMNA PE=3 SV=1
Length = 664
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 47 SPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVK 106
+PLSPT I+R QEK +L+ LNDRLA YI+ V+ L+ + A L + EE + E +K
Sbjct: 19 TPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIK 78
Query: 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
+A E E+ D RK LD + ++ L +E ++ +E +LK
Sbjct: 79 SAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELK 117
>sp|P13648|LMNA_CHICK Lamin-A OS=Gallus gallus GN=LMNA PE=2 SV=1
Length = 657
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 61/99 (61%)
Query: 47 SPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVK 106
+PLSPT I+R QEK +L+ LNDRLA YI+ V+ L+ + A L + EE + E +K
Sbjct: 18 TPLSPTRITRLQEKEDLQELNDRLAVYIDKVRSLELENAGLRLRITESEEVVSREVSGIK 77
Query: 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
AA E E+ D RK LD + ++ L +E ++ +E +LK
Sbjct: 78 AAYEAELADARKTLDSVAKERARLQLELSKVREEHKELK 116
>sp|P21619|LMNB2_MOUSE Lamin-B2 OS=Mus musculus GN=Lmnb2 PE=1 SV=2
Length = 596
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 40 SQPPR--PGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQ--KLQNDKASLEYSLYSIE 95
S PP P +PLSPT +SR QEK EL+ LNDRLA YI+ V+ +L+ND+ L S E
Sbjct: 3 SLPPHAGPATPLSPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLLLRIS--EKE 60
Query: 96 ESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141
E T E +K E E+ D R+ LD + ++ L IE ++ EL
Sbjct: 61 EVTTREVSGIKTLYESELADARRVLDETARERARLQIEIGKVQAEL 106
>sp|P21910|LAML2_XENLA Lamin-L(II) OS=Xenopus laevis PE=2 SV=1
Length = 623
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
Query: 41 QPPRPGS--PLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98
Q P G+ PLSPT ISR QEK EL++LNDRLA YI+ V+ L+ + L + EE
Sbjct: 15 QSPARGTSTPLSPTRISRLQEKEELRHLNDRLAVYIDRVRALELENDRLMVKISEKEEVT 74
Query: 99 TTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRL---LDEL 141
T E +K E E+ D RK LD + ++ L IE + LDEL
Sbjct: 75 TREVSGIKNLYESELADARKVLDETARERARLQIELGKFRSDLDEL 120
>sp|P14732|LMNB2_CHICK Lamin-B2 OS=Gallus gallus GN=LMNB2 PE=2 SV=1
Length = 600
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 56/96 (58%)
Query: 46 GSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKV 105
G+PLSPT ISR QEK EL+ LNDRLA YI+ V+ L+ + L + EE T E +
Sbjct: 12 GTPLSPTRISRLQEKEELRQLNDRLAVYIDRVRALELENDRLLVKISEKEEVTTREVSGI 71
Query: 106 KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141
K E E+ D R+ LD + ++ L IE +L EL
Sbjct: 72 KNLYESELADARRVLDETAKERARLQIEIGKLRAEL 107
>sp|P08928|LAM0_DROME Lamin Dm0 OS=Drosophila melanogaster GN=Lam PE=1 SV=4
Length = 622
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 1 MSGRSKRGATPAKTPSASRGSSSRQTSEVREEPPQPQPQSQPPRPGSPLSPTIISRRQEK 60
MS +S+R T TP S+ R S P P P + SPLSPT SR EK
Sbjct: 1 MSSKSRRAGTA--TPQPGNTSTPRPPSA---GPQPPPPSTHSQTASSPLSPTRHSRVAEK 55
Query: 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKAL 120
EL+NLNDRLA YI+ V+ L+ + + L + + ++ T E +K E E+ + R+ L
Sbjct: 56 VELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLL 115
Query: 121 DRESSSKSALAIEKRRLLDELLDLKNK 147
D + ++ I+ +RL +E +LKNK
Sbjct: 116 DDTARDRARAEIDIKRLWEENEELKNK 142
>sp|P11048|LMNA_XENLA Lamin-A OS=Xenopus laevis GN=lmna PE=2 SV=1
Length = 665
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 61/99 (61%)
Query: 47 SPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVK 106
+PLSPT I+R QEK +L+ LNDRLA YI+ V+ L+ + A L + E+ + E +K
Sbjct: 15 TPLSPTRITRLQEKEDLQGLNDRLAVYIDKVRSLELENARLRLRITESEDVISREVTGIK 74
Query: 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
+A E E+ D RK LD + ++ L +E ++ +E +LK
Sbjct: 75 SAYETELADARKTLDSVAKERARLQLELSKIREEHKELK 113
>sp|P14731|LMNB1_CHICK Lamin-B1 OS=Gallus gallus GN=LMNB1 PE=2 SV=1
Length = 584
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 33 PPQPQPQSQPPRPGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLY 92
P PQP+ + LSPT ISR QEK EL+ LNDRLA YI+ V+ L+ + ++L+ +
Sbjct: 7 PLSPQPRGAAA--SAALSPTRISRLQEKEELRQLNDRLAVYIDKVRSLETENSALQRRVS 64
Query: 93 SIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRL 137
E+ E +K E E+ D RK LD + ++ L IE +L
Sbjct: 65 EREQVCGREISGLKELFETELADARKTLDDTARERAKLQIELGKL 109
>sp|P10999|LAML3_XENLA Lamin-L(III) OS=Xenopus laevis PE=2 SV=2
Length = 583
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 56/87 (64%)
Query: 47 SPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVK 106
SP SPT ISR QEK +L++LNDRLA YIE V+ L+ DK+ L+ L EE + E ++
Sbjct: 18 SPGSPTRISRMQEKEDLRHLNDRLAAYIERVRSLEADKSLLKIQLEEREEVSSREVTNLR 77
Query: 107 AASEKEIEDIRKALDRESSSKSALAIE 133
E E+ D RK LD+ ++ ++ L +E
Sbjct: 78 QLYETELADARKLLDQTANERARLQVE 104
>sp|P09010|LAML1_XENLA Lamin-L(I) OS=Xenopus laevis PE=2 SV=1
Length = 583
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 60/99 (60%)
Query: 47 SPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVK 106
+PLSPT I+R QEK +L+ LNDRLA YI+ V+ L+++ + L + EE + E +K
Sbjct: 20 TPLSPTRITRLQEKVDLQELNDRLALYIDTVRSLESENSLLHVQVTEREEVRSREVSGIK 79
Query: 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
E E+ D R++LD + K+ L +E ++ E DL+
Sbjct: 80 ELYETELADARRSLDDTAREKARLQLELSKVSVEHQDLQ 118
>sp|Q04948|IFE_BRALA Non-neuronal cytoplasmic intermediate filament protein
OS=Branchiostoma lanceolatum PE=2 SV=1
Length = 464
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 42 PPRPGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE 101
P LS ++R EK EL +LNDR A YI+ V+ LQ + LE + I+ES E
Sbjct: 81 PAGALQTLSDARMTRAHEKQELSHLNDRFASYIDKVRYLQERNSKLEAQI-KIQESR--E 137
Query: 102 FKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+K EKE+ D+R +D S+ K+ L IE+ ++ D K K
Sbjct: 138 APNIKDLYEKELRDLRALVDELSNDKAQLEIERNNWQEQAEDYKMK 183
>sp|P35616|NFL_XENLA Neurofilament light polypeptide OS=Xenopus laevis GN=nefl PE=2 SV=3
Length = 544
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
I R QEK +L++LNDR A +IE V +L+ LE L + + H E +++ EKE+
Sbjct: 79 IVRTQEKVQLQDLNDRFANFIERVHELEQRNKVLEAELLLLRQKH-NEPSRLRDMYEKEV 137
Query: 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
D+R A + S + L E+ RL D L L+ +
Sbjct: 138 RDVRLAQEEASGDRQTLRNERERLEDALRVLQGR 171
>sp|P02547|NFL_PIG Neurofilament light polypeptide OS=Sus scrofa GN=NEFL PE=1 SV=3
Length = 549
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIED 115
R QEK +L++LNDR A +IE V +L+ LE L + + H +E + +A E+EI D
Sbjct: 86 RTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAQLLVLRQKH-SEPSRFRALYEQEIRD 144
Query: 116 IRKALDRESSSKSALAIEKRRLLDELLDLK 145
+R A + ++ K AL E+ L + L +L+
Sbjct: 145 LRLAAEDATNEKQALQGEREGLEETLRNLQ 174
>sp|P02548|NFL_BOVIN Neurofilament light polypeptide OS=Bos taurus GN=NEFL PE=1 SV=3
Length = 555
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIED 115
R QEK +L++LNDR A +IE V +L+ LE L + + H +E + +A E+EI D
Sbjct: 87 RTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKH-SEPSRFRALYEQEIRD 145
Query: 116 IRKALDRESSSKSALAIEKRRLLDELLDLK 145
+R A + ++ K AL E+ L + L +L+
Sbjct: 146 LRLAAEDATNEKQALQGEREGLEETLRNLQ 175
>sp|Q5R408|NFL_PONAB Neurofilament light polypeptide OS=Pongo abelii GN=NEFL PE=2 SV=2
Length = 543
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIED 115
R QEK +L++LNDR A +IE V +L+ LE L + + H +E + +A E+EI D
Sbjct: 87 RTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKH-SEPSRFRALYEQEIRD 145
Query: 116 IRKALDRESSSKSALAIEKRRLLDELLDLK 145
+R A + ++ K AL E+ L + L +L+
Sbjct: 146 LRLAAEDATNEKQALQGEREGLEETLRNLQ 175
>sp|P07196|NFL_HUMAN Neurofilament light polypeptide OS=Homo sapiens GN=NEFL PE=1 SV=3
Length = 543
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIED 115
R QEK +L++LNDR A +IE V +L+ LE L + + H +E + +A E+EI D
Sbjct: 87 RTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKH-SEPSRFRALYEQEIRD 145
Query: 116 IRKALDRESSSKSALAIEKRRLLDELLDLK 145
+R A + ++ K AL E+ L + L +L+
Sbjct: 146 LRLAAEDATNEKQALQGEREGLEETLRNLQ 175
>sp|Q16352|AINX_HUMAN Alpha-internexin OS=Homo sapiens GN=INA PE=1 SV=2
Length = 499
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
I R EK +L+ LNDR A +IE V +L+ +LE L ++ + H E +V ++E+
Sbjct: 89 IIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRH-AEPSRVGELFQREL 147
Query: 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
D+R L+ SS++S +E+ L +E+ L+ +
Sbjct: 148 RDLRAQLEEASSARSQALLERDGLAEEVQRLRAR 181
>sp|P08551|NFL_MOUSE Neurofilament light polypeptide OS=Mus musculus GN=Nefl PE=1 SV=5
Length = 543
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIED 115
R QEK +L++LNDR A +IE V +L+ LE L + + H +E + +A E+EI D
Sbjct: 87 RTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKH-SEPSRFRALYEQEIRD 145
Query: 116 IRKALDRESSSKSALAIEKRRLLDELLDLK 145
+R A + ++ K AL E+ L + L +L+
Sbjct: 146 LRLAAEDATNEKQALQGEREGLEETLRNLQ 175
>sp|P19527|NFL_RAT Neurofilament light polypeptide OS=Rattus norvegicus GN=Nefl PE=1
SV=3
Length = 542
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIED 115
R QEK +L++LNDR A +IE V +L+ LE L + + H +E + +A E+EI D
Sbjct: 87 RTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKH-SEPSRFRALYEQEIRD 145
Query: 116 IRKALDRESSSKSALAIEKRRLLDELLDLK 145
+R A + ++ K AL E+ L + L +L+
Sbjct: 146 LRLAAEDATNEKQALQGEREGLEETLRNLQ 175
>sp|P16053|NFM_CHICK Neurofilament medium polypeptide OS=Gallus gallus GN=NEFM PE=2 SV=2
Length = 858
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
+SR EK +L+ LNDR A YIE V L+ +E L ++ + H ++ A E+E+
Sbjct: 91 LSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAELAALRQKHAGR-AQLGDAYEQEL 149
Query: 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
++R AL++ S K+ + ++ + +++ L+ +
Sbjct: 150 RELRGALEQVSHEKAQIQLDSEHIEEDIQRLRER 183
>sp|Q08DH7|AINX_BOVIN Alpha-internexin OS=Bos taurus GN=INA PE=2 SV=1
Length = 499
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
I R EK +L+ LNDR A +IE V +L+ +LE L ++ + H E +V ++E+
Sbjct: 89 IIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRH-AEPSRVGELFQREL 147
Query: 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
D+R L+ SS+++ +E+ L +E+ L+
Sbjct: 148 RDLRAQLEEASSARAQALLERDGLAEEVQRLR 179
>sp|Q02916|NFL_COTJA Neurofilament light polypeptide OS=Coturnix coturnix japonica
GN=NEFL PE=3 SV=3
Length = 556
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIED 115
R QE+ +L++LNDR A +IE V +L+ LE L + + H E + +A E+EI +
Sbjct: 88 RSQERAQLQDLNDRFACFIERVHELEQQNKVLEAELLVLRQKH-AEPSRFRALYEQEIRE 146
Query: 116 IRKALDRESSSKSALAIEKRRL 137
+R A + +S K AL E+ L
Sbjct: 147 LRLAAEEATSEKQALQGERESL 168
>sp|P46660|AINX_MOUSE Alpha-internexin OS=Mus musculus GN=Ina PE=1 SV=2
Length = 504
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
I R EK +L+ LNDR A +IE V +L+ +LE L ++ + H E +V ++E+
Sbjct: 89 IIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRH-AEPSRVGELFQREL 147
Query: 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
++R L+ SS+++ +E+ L +E+ L+ +
Sbjct: 148 RELRAQLEEASSARAQALLERDGLAEEVQRLRAR 181
>sp|P23565|AINX_RAT Alpha-internexin OS=Rattus norvegicus GN=Ina PE=1 SV=2
Length = 505
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
I R EK +L+ LNDR A +IE V +L+ +LE L ++ + H E +V ++E+
Sbjct: 89 IIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRH-AEPSRVGELFQREL 147
Query: 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
++R L+ SS+++ +E+ L +E+ L+ +
Sbjct: 148 RELRAQLEEASSARAQALLERDGLAEEVQRLRAR 181
>sp|P23731|IFEB_ASCSU Intermediate filament protein B OS=Ascaris suum PE=1 SV=1
Length = 589
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%)
Query: 10 TPAKTPSASRGSSSRQTSEVREEPPQPQPQSQPPRPGSPLSPTIISRRQEKNELKNLNDR 69
+ A + A G R V E P + + + +EK E++ LNDR
Sbjct: 32 SGAYSTGAVSGGGGRVLKMVTEMGSASIGGISPALSANAAKSFLEATDKEKKEMQGLNDR 91
Query: 70 LAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSA 129
L YI+ V+KL+ L L + + ++K + D RK +D + K+
Sbjct: 92 LGNYIDRVKKLEEQNRKLVADLDELRGRWGKDTSEIKIQYSDSLRDARKEIDDGARRKAE 151
Query: 130 LAIEKRRLLDELLDLKNK 147
+ ++ RL D+L +L+N+
Sbjct: 152 IDVKVARLRDDLAELRNR 169
>sp|P02540|DESM_PIG Desmin OS=Sus scrofa GN=DES PE=1 SV=4
Length = 471
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 53 IISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKE 112
+ +R EK EL+ LNDR A YIE V+ L+ A+L + ++ T +V E+E
Sbjct: 103 LTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT---RVAEIYEEE 159
Query: 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+ ++R+ ++ ++ ++ + +E+ LLD+L LK K
Sbjct: 160 LRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAK 194
>sp|P19246|NFH_MOUSE Neurofilament heavy polypeptide OS=Mus musculus GN=Nefh PE=1 SV=3
Length = 1090
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
++ R EK +L+ LNDR A YI+ V++L+ SLE ++ + + E+E+
Sbjct: 90 VAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRA-AMGELYEREV 148
Query: 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
++R A+ R +++ L +E+ LL+++ ++ +
Sbjct: 149 REMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQR 182
>sp|O62654|DESM_BOVIN Desmin OS=Bos taurus GN=DES PE=2 SV=3
Length = 470
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 53 IISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKE 112
+ +R EK EL+ LNDR A YIE V+ L+ A+L + ++ T +V E+E
Sbjct: 102 LTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT---RVAEIYEEE 158
Query: 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+ ++R+ ++ ++ ++ + +E+ LLD+L LK K
Sbjct: 159 LRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAK 193
>sp|Q5XFN2|DESM_CANFA Desmin OS=Canis familiaris GN=DES PE=3 SV=3
Length = 469
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 53 IISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKE 112
+ +R EK EL+ LNDR A YIE V+ L+ A+L + ++ T +V E+E
Sbjct: 101 LTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT---RVAEIYEEE 157
Query: 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+ ++R+ ++ ++ ++ + +E+ LLD+L LK K
Sbjct: 158 LRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAK 192
>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 OS=Caenorhabditis elegans
GN=ifa-1 PE=1 SV=2
Length = 575
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 45 PGSPLSP-------TI-ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96
GS LSP TI SR +EK E+ +LNDRLA YIE V+ L+ L L ++
Sbjct: 47 AGSGLSPFGQNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRS 106
Query: 97 SHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+ ++ E E+ D +K +D + + + + +++ DEL +++ K
Sbjct: 107 KWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRK 157
>sp|P09654|VIME_CHICK Vimentin OS=Gallus gallus GN=VIM PE=3 SV=2
Length = 460
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 10 TPAKTPSASRGSSSR-QTSEVREEPPQPQPQSQPPRPGSPLSPTI-----ISRRQEKNEL 63
+ A+ SAS G R + + VR P P L+ I +R EK EL
Sbjct: 43 SSARYVSASPGGVYRTKATSVRLRSSMP-PMRMHDAVDFTLADAINTEFKANRTNEKVEL 101
Query: 64 KNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRE 123
+ LNDR A YI+ V+ L+ L L ++ T+ + E+E+ D+R+ +D+
Sbjct: 102 QELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDL---YEEEMRDVRRQVDQL 158
Query: 124 SSSKSALAIEKRRLLDELLDLKNK 147
++ K+ + +E+ L D+++ L+ K
Sbjct: 159 TNDKARVEVERDNLADDIMRLREK 182
>sp|P02542|DESM_CHICK Desmin OS=Gallus gallus GN=DES PE=1 SV=1
Length = 463
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIE 114
+R EK EL+ LNDR A YIE V+ L+ A + + + T +V E+E+
Sbjct: 95 TRTNEKVELQELNDRFANYIEKVRFLEQQNALMVAEVNRLRGKQPT---RVAEMYEEELR 151
Query: 115 DIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
++R+ +D + ++ + +E+ LLD L LK K
Sbjct: 152 ELRRQVDALTGQRARVEVERDNLLDNLQKLKQK 184
>sp|B4F721|NFL_XENTR Neurofilament light polypeptide OS=Xenopus tropicalis GN=nefl PE=2
SV=1
Length = 557
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
I R QEK +L++LNDR A +IE V +L+ LE L + + H E +++ E+E+
Sbjct: 81 IVRTQEKAQLQDLNDRFANFIERVHELEQRNKVLEAELLLLRQKH-NEPSRLRDLYEQEV 139
Query: 114 EDIRKALDRESSSKSALAIEKRRLLDEL 141
++R A + + + + E+ RL D L
Sbjct: 140 RELRLAQEEATGDRQTMRNERERLEDAL 167
>sp|P12036|NFH_HUMAN Neurofilament heavy polypeptide OS=Homo sapiens GN=NEFH PE=1 SV=4
Length = 1026
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 52 TIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEK 111
+ + R EK +L+ LNDR A YI+ V++L+ SLE ++ + + E+
Sbjct: 90 AVATSRSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRS-AMGELYER 148
Query: 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
E+ ++R A+ R +++ L +E+ LL+++ ++ +
Sbjct: 149 EVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQR 184
>sp|P16884|NFH_RAT Neurofilament heavy polypeptide OS=Rattus norvegicus GN=Nefh PE=1
SV=4
Length = 1072
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAAS---- 109
++ R EK +L+ LNDR A YI+ V++L+ +LE ++ + +K +AA
Sbjct: 89 VAARSEKEQLQALNDRFAGYIDKVRQLEAHNRTLEGEAAALRQ------QKGRAAMGELY 142
Query: 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
E+E+ ++R A+ R +++ + +E+ LL+++ ++ +
Sbjct: 143 EREVREMRGAVLRLGAARGHVRLEQEHLLEDIAHVRQR 180
>sp|P22488|IFEA_HELAS Non-neuronal cytoplasmic intermediate filament protein OS=Helix
aspersa PE=3 SV=2
Length = 576
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 39 QSQPPRPGSPLSPTIIS-----RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93
QS P LS + I+ R +EK E++NLN+RLA YIE V L LE +
Sbjct: 48 QSITPGVYQQLSSSGITDFRGTREKEKREMQNLNERLASYIEKVHFLDAQVKKLEAENEA 107
Query: 94 IEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
+ + + ++ A E E+ RK +D SS+K + L DE+ L+
Sbjct: 108 LRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSEAKVAGLQDEIASLR 159
>sp|Q8VED5|K2C79_MOUSE Keratin, type II cytoskeletal 79 OS=Mus musculus GN=Krt79 PE=1 SV=2
Length = 531
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLE--YSLYSIEESHTTEFKKVKAASEKEI 113
R QE+ ++K LN++ A +I+ V+ L+ LE ++L + +T + ++ E +
Sbjct: 136 RTQEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWALLQEQSQNTGVARSLEPFFENYL 195
Query: 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+R+ LD + S + L +E R + D L D KNK
Sbjct: 196 STLRRQLDTKQSERGRLDMELRNVQDNLEDFKNK 229
>sp|P02541|DESM_MESAU Desmin OS=Mesocricetus auratus GN=DES PE=2 SV=2
Length = 469
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 53 IISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKE 112
+ +R EK EL+ LNDR A YIE V+ L+ A+L + ++ T +V E+E
Sbjct: 101 LATRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT---RVAELYEEE 157
Query: 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+ ++R+ ++ ++ ++ + +E+ L+D+L LK K
Sbjct: 158 MRELRRQVEVLTNQRARVDVERDNLIDDLQRLKAK 192
>sp|Q01241|NF70_DORPE 70 kDa neurofilament protein OS=Doryteuthis pealeii PE=2 SV=1
Length = 615
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIE 114
+R +EK ++++LN+R A YIE V+ L+ L L ++ E +K E E+E
Sbjct: 92 NREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELE 151
Query: 115 DIRKALDRESSSKSALAIEKRRLLDEL 141
+ RK +D + K L + L+D+L
Sbjct: 152 EARKLIDATNKEKITLDVRVTELIDQL 178
>sp|P31001|DESM_MOUSE Desmin OS=Mus musculus GN=Des PE=1 SV=3
Length = 469
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 53 IISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKE 112
+ +R EK EL+ LNDR A YIE V+ L+ A+L + ++ T +V E+E
Sbjct: 101 LATRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT---RVAELYEEE 157
Query: 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+ ++R+ ++ ++ ++ + +E+ L+D+L LK K
Sbjct: 158 MRELRRQVEVLTNQRARVDVERDNLIDDLQRLKAK 192
>sp|P18520|ION3_CARAU Intermediate filament protein ON3 OS=Carassius auratus PE=2 SV=1
Length = 520
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 49 LSPTI-ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKA 107
+ P I + R QEK ++K+LN+R A +I+ V+ L+ LE + +S+ ++ T + A
Sbjct: 98 IDPNIQVVRTQEKEQMKSLNNRFASFIDKVRFLEQQNKMLE-TKWSLLQNQTATRSNIDA 156
Query: 108 ASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
E I ++R+ LD + K L + + + D KNK
Sbjct: 157 MFEAYINNLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNK 196
>sp|Q6NWF6|K2C8_DANRE Keratin, type II cytoskeletal 8 OS=Danio rerio GN=krt8 PE=1 SV=1
Length = 520
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 49 LSPTI-ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKA 107
+ P I I R QEK ++K LN+R A +I+ V+ L+ LE + +S+ ++ T + A
Sbjct: 104 IDPNIQIVRTQEKEQIKTLNNRFASFIDKVRFLEQQNKMLE-TKWSLLQNQTATRSNIDA 162
Query: 108 ASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
E I ++R+ LD + K L + + + D KNK
Sbjct: 163 MFEAYIANLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNK 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.303 0.121 0.314
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,735,224
Number of Sequences: 539616
Number of extensions: 2175469
Number of successful extensions: 22635
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 905
Number of HSP's that attempted gapping in prelim test: 19832
Number of HSP's gapped (non-prelim): 3482
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)