Query psy20
Match_columns 147
No_of_seqs 145 out of 1187
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 21:39:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy20.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/20hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0977|consensus 99.9 3.4E-23 7.4E-28 181.0 13.6 111 37-147 18-128 (546)
2 PF00038 Filament: Intermediat 99.9 5E-22 1.1E-26 163.1 9.1 90 58-147 1-90 (312)
3 TIGR03752 conj_TIGR03752 integ 94.4 0.42 9E-06 42.3 9.6 85 60-144 58-142 (472)
4 PF05529 Bap31: B-cell recepto 92.6 1.2 2.5E-05 34.4 8.5 75 67-141 117-191 (192)
5 PF02403 Seryl_tRNA_N: Seryl-t 92.4 0.85 1.8E-05 31.8 7.0 91 54-144 6-100 (108)
6 KOG4673|consensus 92.4 4.6 9.9E-05 37.7 13.1 87 56-142 348-440 (961)
7 TIGR02449 conserved hypothetic 91.7 2.4 5.2E-05 27.7 7.9 36 62-97 1-36 (65)
8 PRK11546 zraP zinc resistance 91.2 3.3 7.1E-05 31.1 9.2 65 57-125 46-110 (143)
9 PF04111 APG6: Autophagy prote 90.7 3.3 7.2E-05 34.7 9.9 88 58-146 47-134 (314)
10 PRK10884 SH3 domain-containing 90.5 2.3 4.9E-05 33.7 8.3 21 75-95 93-113 (206)
11 PRK11020 hypothetical protein; 90.4 0.84 1.8E-05 33.0 5.2 16 58-73 2-17 (118)
12 PHA02562 46 endonuclease subun 90.1 1.6 3.4E-05 38.5 7.8 72 74-145 173-247 (562)
13 KOG0977|consensus 90.0 1.1 2.3E-05 40.5 6.7 75 59-137 294-368 (546)
14 COG1579 Zn-ribbon protein, pos 89.7 3.5 7.6E-05 33.5 8.9 85 60-144 37-129 (239)
15 KOG4196|consensus 89.5 4.8 0.0001 29.8 8.7 79 64-144 35-114 (135)
16 PF10186 Atg14: UV radiation r 89.1 6.5 0.00014 31.4 10.3 32 65-96 17-48 (302)
17 TIGR02231 conserved hypothetic 89.1 4.9 0.00011 35.6 10.2 84 62-145 72-172 (525)
18 PF04156 IncA: IncA protein; 88.6 9 0.0002 29.1 10.3 36 61-96 81-116 (191)
19 PF07106 TBPIP: Tat binding pr 88.5 6.1 0.00013 29.7 9.1 39 60-98 71-109 (169)
20 KOG0971|consensus 88.4 2.5 5.5E-05 40.4 8.1 36 110-145 402-437 (1243)
21 KOG0288|consensus 88.3 10 0.00022 33.3 11.2 68 57-132 9-76 (459)
22 PF09738 DUF2051: Double stran 88.2 14 0.00031 30.9 13.6 36 110-145 125-160 (302)
23 PF05010 TACC: Transforming ac 87.0 8.8 0.00019 30.5 9.4 80 64-143 114-193 (207)
24 COG1579 Zn-ribbon protein, pos 86.9 13 0.00027 30.3 10.4 31 61-91 45-75 (239)
25 PF00261 Tropomyosin: Tropomyo 86.7 11 0.00024 30.0 10.0 78 67-145 133-217 (237)
26 KOG2264|consensus 86.5 2.8 6E-05 38.4 7.0 86 60-146 59-149 (907)
27 COG5185 HEC1 Protein involved 86.1 12 0.00026 33.6 10.5 41 56-96 269-309 (622)
28 PRK11637 AmiB activator; Provi 86.1 8.3 0.00018 33.3 9.6 33 110-142 95-127 (428)
29 PF00038 Filament: Intermediat 85.8 9.7 0.00021 31.1 9.5 67 78-145 71-137 (312)
30 PF10473 CENP-F_leu_zip: Leuci 85.4 6 0.00013 29.6 7.3 65 72-144 21-85 (140)
31 PF05384 DegS: Sensor protein 83.8 17 0.00037 27.7 10.9 82 60-141 33-121 (159)
32 PRK10698 phage shock protein P 83.8 20 0.00043 28.5 10.3 90 58-147 35-135 (222)
33 PF06156 DUF972: Protein of un 83.6 4 8.6E-05 29.1 5.5 35 110-144 21-55 (107)
34 PF14662 CCDC155: Coiled-coil 83.6 11 0.00025 29.6 8.4 13 81-93 35-47 (193)
35 PF10226 DUF2216: Uncharacteri 83.4 20 0.00043 28.2 11.0 37 62-98 42-78 (195)
36 PRK13169 DNA replication intia 83.3 4.2 9.1E-05 29.2 5.5 35 110-144 21-55 (110)
37 PF15372 DUF4600: Domain of un 83.2 15 0.00032 27.2 8.5 74 69-143 9-83 (129)
38 PF12718 Tropomyosin_1: Tropom 83.2 16 0.00036 27.1 9.5 32 66-97 12-43 (143)
39 PF14662 CCDC155: Coiled-coil 83.2 21 0.00045 28.2 10.0 36 64-99 77-112 (193)
40 PF04012 PspA_IM30: PspA/IM30 82.9 16 0.00035 28.4 9.3 89 58-146 34-133 (221)
41 PF14197 Cep57_CLD_2: Centroso 82.8 11 0.00024 24.7 7.7 27 59-88 6-32 (69)
42 PHA01750 hypothetical protein 82.6 3.9 8.4E-05 26.9 4.6 37 104-147 35-71 (75)
43 PF04156 IncA: IncA protein; 82.4 19 0.00042 27.2 10.9 35 58-92 85-119 (191)
44 PF02050 FliJ: Flagellar FliJ 82.2 13 0.00028 25.1 10.0 81 59-142 3-83 (123)
45 PF04849 HAP1_N: HAP1 N-termin 81.6 12 0.00027 31.4 8.5 25 73-97 165-189 (306)
46 PRK13694 hypothetical protein; 81.5 10 0.00022 25.9 6.5 51 67-119 11-61 (83)
47 KOG1029|consensus 80.6 23 0.0005 33.7 10.5 94 52-145 477-576 (1118)
48 KOG1962|consensus 80.6 11 0.00023 30.2 7.5 16 67-82 113-128 (216)
49 PF05529 Bap31: B-cell recepto 80.6 17 0.00037 27.8 8.5 76 70-145 113-188 (192)
50 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.2 20 0.00043 26.0 8.9 32 105-136 99-130 (132)
51 KOG4001|consensus 78.8 9.5 0.00021 30.6 6.6 24 75-98 192-215 (259)
52 PF02183 HALZ: Homeobox associ 78.4 11 0.00025 22.6 5.4 34 113-146 7-40 (45)
53 KOG4603|consensus 78.3 27 0.00058 27.3 8.7 55 61-121 79-133 (201)
54 PF10146 zf-C4H2: Zinc finger- 78.0 34 0.00075 27.5 11.6 40 106-145 62-101 (230)
55 COG2433 Uncharacterized conser 77.6 18 0.00038 33.3 8.6 32 64-95 418-449 (652)
56 smart00338 BRLZ basic region l 77.6 11 0.00024 23.8 5.6 35 111-145 26-60 (65)
57 PLN02678 seryl-tRNA synthetase 77.3 12 0.00026 33.0 7.5 83 61-143 17-103 (448)
58 KOG0612|consensus 77.2 23 0.00051 35.0 9.7 34 57-94 444-477 (1317)
59 COG3750 Uncharacterized protei 77.1 20 0.00044 24.4 8.9 32 67-98 13-44 (85)
60 PF06785 UPF0242: Uncharacteri 77.0 48 0.001 28.6 10.9 44 55-98 96-157 (401)
61 KOG4466|consensus 76.7 32 0.0007 28.7 9.3 59 61-122 49-108 (291)
62 PRK10884 SH3 domain-containing 76.6 18 0.00039 28.6 7.7 27 112-138 140-166 (206)
63 PF07888 CALCOCO1: Calcium bin 76.5 27 0.00058 31.7 9.5 34 57-93 149-182 (546)
64 PF00170 bZIP_1: bZIP transcri 76.5 13 0.00029 23.3 5.8 36 110-145 25-60 (64)
65 PRK04778 septation ring format 76.5 36 0.00077 30.7 10.4 71 72-143 345-415 (569)
66 PF05701 WEMBL: Weak chloropla 76.4 53 0.0011 29.4 11.4 92 52-144 314-405 (522)
67 KOG4643|consensus 75.8 33 0.00071 33.5 10.2 79 56-134 511-601 (1195)
68 KOG0161|consensus 75.8 25 0.00054 36.5 9.9 59 61-120 971-1029(1930)
69 PF04568 IATP: Mitochondrial A 75.2 9.4 0.0002 26.9 5.1 16 56-71 67-82 (100)
70 PF01166 TSC22: TSC-22/dip/bun 75.1 3.5 7.5E-05 26.4 2.6 30 60-89 13-42 (59)
71 TIGR03185 DNA_S_dndD DNA sulfu 75.0 59 0.0013 29.7 11.6 69 76-144 392-461 (650)
72 PF07888 CALCOCO1: Calcium bin 74.8 47 0.001 30.2 10.6 85 58-146 368-452 (546)
73 KOG0978|consensus 74.5 44 0.00095 31.3 10.5 33 63-95 505-537 (698)
74 PF09304 Cortex-I_coil: Cortex 74.2 29 0.00063 24.8 7.5 40 82-122 37-76 (107)
75 PLN02320 seryl-tRNA synthetase 73.9 14 0.0003 33.2 7.0 97 47-143 64-162 (502)
76 PRK05431 seryl-tRNA synthetase 73.9 21 0.00045 31.1 8.0 88 56-143 8-98 (425)
77 KOG4797|consensus 73.9 6.7 0.00014 28.3 4.1 29 60-88 66-94 (123)
78 COG4026 Uncharacterized protei 73.6 33 0.00072 28.0 8.4 38 109-146 161-198 (290)
79 PF00261 Tropomyosin: Tropomyo 73.5 41 0.0009 26.7 9.1 30 110-139 203-232 (237)
80 PF05700 BCAS2: Breast carcino 73.4 8.5 0.00018 30.5 5.1 21 110-130 195-215 (221)
81 PF10267 Tmemb_cc2: Predicted 73.2 47 0.001 29.0 9.9 22 57-78 218-239 (395)
82 PRK11637 AmiB activator; Provi 72.8 36 0.00078 29.3 9.2 35 110-144 88-122 (428)
83 PF08172 CASP_C: CASP C termin 72.3 51 0.0011 26.8 10.5 40 106-145 81-120 (248)
84 PF12709 Kinetocho_Slk19: Cent 72.0 29 0.00064 23.9 7.8 38 107-144 45-82 (87)
85 PRK02224 chromosome segregatio 72.0 64 0.0014 30.2 11.3 78 67-145 369-446 (880)
86 KOG0995|consensus 71.7 64 0.0014 29.5 10.6 24 75-98 235-258 (581)
87 KOG0249|consensus 71.3 17 0.00038 34.1 7.1 39 107-145 219-257 (916)
88 KOG0972|consensus 70.6 38 0.00083 28.7 8.4 58 64-122 269-326 (384)
89 COG4467 Regulator of replicati 70.2 10 0.00022 27.3 4.3 34 110-143 21-54 (114)
90 PLN02939 transferase, transfer 69.8 43 0.00094 32.5 9.6 95 49-145 290-389 (977)
91 TIGR00219 mreC rod shape-deter 69.8 11 0.00024 31.0 5.2 50 67-120 58-107 (283)
92 smart00338 BRLZ basic region l 69.6 25 0.00054 22.1 6.1 32 55-93 20-51 (65)
93 PF09730 BicD: Microtubule-ass 69.4 60 0.0013 30.5 10.2 75 57-146 16-90 (717)
94 PF01920 Prefoldin_2: Prefoldi 69.4 32 0.00069 23.2 10.1 84 61-144 5-95 (106)
95 PF11365 DUF3166: Protein of u 69.3 36 0.00079 23.8 9.3 70 61-130 8-88 (96)
96 PF09730 BicD: Microtubule-ass 69.3 46 0.001 31.2 9.5 68 60-128 82-152 (717)
97 TIGR03752 conj_TIGR03752 integ 69.2 29 0.00063 30.9 7.8 30 67-96 58-87 (472)
98 TIGR00606 rad50 rad50. This fa 68.9 72 0.0016 31.7 11.3 78 64-144 1008-1087(1311)
99 KOG0964|consensus 68.2 38 0.00082 33.1 8.7 67 58-132 184-251 (1200)
100 KOG1853|consensus 68.0 35 0.00075 28.4 7.5 51 76-130 60-110 (333)
101 PRK09039 hypothetical protein; 67.6 68 0.0015 27.1 9.6 11 61-71 53-63 (343)
102 PF10212 TTKRSYEDQ: Predicted 67.1 57 0.0012 29.5 9.3 33 106-138 482-514 (518)
103 PF15233 SYCE1: Synaptonemal c 67.0 29 0.00062 25.8 6.2 59 80-139 4-62 (134)
104 KOG0996|consensus 66.6 1.5E+02 0.0031 29.7 13.1 34 110-144 864-897 (1293)
105 PF15066 CAGE1: Cancer-associa 66.4 29 0.00062 31.1 7.2 30 108-137 359-388 (527)
106 KOG1029|consensus 66.3 25 0.00054 33.5 7.1 57 79-136 441-497 (1118)
107 PF08614 ATG16: Autophagy prot 66.2 58 0.0013 25.0 10.0 27 114-140 147-173 (194)
108 PF13851 GAS: Growth-arrest sp 66.0 62 0.0013 25.3 10.0 57 58-118 83-139 (201)
109 KOG0161|consensus 65.8 41 0.0009 35.0 9.0 90 57-146 1209-1336(1930)
110 TIGR00414 serS seryl-tRNA synt 65.8 40 0.00087 29.3 8.0 89 55-143 7-101 (418)
111 TIGR02169 SMC_prok_A chromosom 65.5 1.3E+02 0.0028 28.7 12.6 23 62-84 682-704 (1164)
112 PF01763 Herpes_UL6: Herpesvir 65.3 35 0.00077 31.0 7.7 33 64-96 362-398 (557)
113 PF12329 TMF_DNA_bd: TATA elem 64.7 38 0.00081 22.3 6.9 37 109-145 31-67 (74)
114 COG3074 Uncharacterized protei 64.6 39 0.00085 22.5 9.6 63 76-146 12-74 (79)
115 PF10146 zf-C4H2: Zinc finger- 64.2 75 0.0016 25.6 9.5 21 118-138 67-87 (230)
116 PRK03918 chromosome segregatio 63.8 1.3E+02 0.0027 28.2 11.4 34 110-143 665-698 (880)
117 PF08172 CASP_C: CASP C termin 63.7 79 0.0017 25.7 10.1 25 111-135 107-131 (248)
118 KOG4360|consensus 63.6 60 0.0013 29.5 8.7 77 71-147 162-248 (596)
119 PRK00888 ftsB cell division pr 63.4 27 0.00058 24.6 5.5 33 107-139 30-62 (105)
120 PF03670 UPF0184: Uncharacteri 62.8 33 0.00072 23.4 5.5 38 60-97 25-62 (83)
121 PF15035 Rootletin: Ciliary ro 62.6 70 0.0015 24.7 9.1 28 116-143 86-113 (182)
122 TIGR02168 SMC_prok_B chromosom 62.6 79 0.0017 29.9 10.0 25 115-139 912-936 (1179)
123 PF12718 Tropomyosin_1: Tropom 62.6 61 0.0013 24.0 9.9 39 60-98 20-58 (143)
124 PF09728 Taxilin: Myosin-like 62.6 75 0.0016 26.6 8.8 88 57-144 56-147 (309)
125 PF04111 APG6: Autophagy prote 62.5 63 0.0014 27.0 8.4 27 71-97 46-72 (314)
126 PF11932 DUF3450: Protein of u 62.2 76 0.0016 25.3 8.6 35 110-144 83-117 (251)
127 KOG0804|consensus 62.1 1.2E+02 0.0026 27.2 10.6 35 59-93 345-379 (493)
128 PF10205 KLRAQ: Predicted coil 61.9 54 0.0012 23.2 7.4 36 109-144 38-73 (102)
129 PF00170 bZIP_1: bZIP transcri 61.8 37 0.0008 21.3 6.2 37 55-91 20-56 (64)
130 KOG4360|consensus 61.6 84 0.0018 28.6 9.2 27 119-145 276-302 (596)
131 COG2433 Uncharacterized conser 61.3 94 0.002 28.8 9.6 34 63-96 424-457 (652)
132 PF11932 DUF3450: Protein of u 61.3 82 0.0018 25.1 10.2 23 109-131 75-97 (251)
133 KOG4643|consensus 61.2 35 0.00076 33.3 7.2 57 73-129 262-319 (1195)
134 TIGR02977 phageshock_pspA phag 61.1 78 0.0017 24.8 9.3 85 62-146 39-134 (219)
135 COG4942 Membrane-bound metallo 60.7 1.1E+02 0.0024 26.9 9.7 65 59-124 43-107 (420)
136 PF09304 Cortex-I_coil: Cortex 60.3 60 0.0013 23.2 8.9 20 77-96 46-65 (107)
137 KOG4348|consensus 60.2 43 0.00094 30.0 7.1 36 107-142 590-625 (627)
138 PF07926 TPR_MLP1_2: TPR/MLP1/ 60.2 62 0.0013 23.3 9.8 81 61-142 10-90 (132)
139 KOG0250|consensus 59.6 1.5E+02 0.0032 29.2 11.1 26 119-144 402-427 (1074)
140 PF06216 RTBV_P46: Rice tungro 59.3 99 0.0022 25.8 8.7 69 65-145 40-112 (389)
141 PF13747 DUF4164: Domain of un 59.2 51 0.0011 22.5 6.1 28 115-142 36-63 (89)
142 PF05911 DUF869: Plant protein 58.9 1.1E+02 0.0024 29.0 10.0 37 106-142 129-165 (769)
143 PF08826 DMPK_coil: DMPK coile 58.6 39 0.00085 21.7 5.1 33 115-147 29-61 (61)
144 KOG3584|consensus 58.5 13 0.00028 31.3 3.5 23 75-97 319-341 (348)
145 PF13879 KIAA1430: KIAA1430 ho 58.4 52 0.0011 21.9 6.4 56 75-132 36-94 (98)
146 PF10073 DUF2312: Uncharacteri 58.2 53 0.0012 21.9 7.5 31 68-98 4-34 (74)
147 PF05278 PEARLI-4: Arabidopsis 58.1 1E+02 0.0022 25.6 8.6 36 111-146 228-263 (269)
148 PF13805 Pil1: Eisosome compon 58.0 98 0.0021 25.6 8.6 28 113-140 167-194 (271)
149 PRK07857 hypothetical protein; 58.0 39 0.00084 24.1 5.4 36 110-145 27-62 (106)
150 PF04977 DivIC: Septum formati 57.6 43 0.00094 21.3 5.4 28 110-137 23-50 (80)
151 PF08317 Spc7: Spc7 kinetochor 57.6 1.1E+02 0.0024 25.4 10.9 19 80-98 182-200 (325)
152 KOG4674|consensus 57.4 68 0.0015 33.3 8.7 78 67-144 790-870 (1822)
153 PF09744 Jnk-SapK_ap_N: JNK_SA 57.3 83 0.0018 23.9 7.6 36 106-141 84-119 (158)
154 PF11559 ADIP: Afadin- and alp 56.5 76 0.0016 23.2 10.2 46 51-96 42-87 (151)
155 KOG0804|consensus 56.4 32 0.00069 30.6 5.7 63 62-124 383-448 (493)
156 TIGR02209 ftsL_broad cell divi 56.4 31 0.00068 22.5 4.6 29 110-138 30-58 (85)
157 PF07989 Microtub_assoc: Micro 56.3 56 0.0012 21.6 8.4 64 78-142 10-74 (75)
158 PF06005 DUF904: Protein of un 56.3 56 0.0012 21.5 10.6 65 62-141 5-69 (72)
159 PF03961 DUF342: Protein of un 56.2 1.4E+02 0.003 26.0 10.5 35 110-144 374-408 (451)
160 PF15290 Syntaphilin: Golgi-lo 56.1 1.2E+02 0.0026 25.4 13.5 67 58-124 65-137 (305)
161 COG1196 Smc Chromosome segrega 56.0 88 0.0019 30.7 9.2 32 110-141 883-914 (1163)
162 COG1196 Smc Chromosome segrega 55.8 98 0.0021 30.4 9.5 13 66-78 833-845 (1163)
163 PF06156 DUF972: Protein of un 55.5 38 0.00082 24.0 5.1 37 61-97 15-51 (107)
164 PF05557 MAD: Mitotic checkpoi 55.1 4 8.6E-05 37.7 0.0 72 67-143 249-323 (722)
165 PF07334 IFP_35_N: Interferon- 55.0 26 0.00057 23.5 3.9 26 120-145 2-27 (76)
166 PF10481 CENP-F_N: Cenp-F N-te 54.9 1.3E+02 0.0028 25.3 9.0 77 58-142 57-133 (307)
167 PF11026 DUF2721: Protein of u 54.8 24 0.00052 25.6 4.1 21 62-82 15-35 (130)
168 PF14197 Cep57_CLD_2: Centroso 54.7 58 0.0012 21.2 9.0 19 79-97 2-20 (69)
169 KOG1853|consensus 54.6 1.3E+02 0.0027 25.1 10.0 61 78-142 55-115 (333)
170 TIGR02209 ftsL_broad cell divi 54.5 40 0.00087 22.0 4.9 36 60-95 23-58 (85)
171 PF06785 UPF0242: Uncharacteri 54.2 96 0.0021 26.8 8.0 75 60-134 140-225 (401)
172 TIGR01808 CM_M_hiGC-arch monof 54.2 41 0.00088 22.0 4.8 27 112-138 8-34 (74)
173 KOG1962|consensus 53.8 1.1E+02 0.0025 24.4 8.6 76 66-142 135-210 (216)
174 PRK06285 chorismate mutase; Pr 53.7 58 0.0013 22.2 5.7 36 110-145 6-41 (96)
175 PF15619 Lebercilin: Ciliary p 53.6 1.1E+02 0.0023 24.0 10.4 62 61-123 19-80 (194)
176 PF14775 NYD-SP28_assoc: Sperm 53.6 26 0.00057 22.2 3.7 27 65-92 31-57 (60)
177 PF05700 BCAS2: Breast carcino 53.3 87 0.0019 24.7 7.4 69 76-145 137-209 (221)
178 PF05622 HOOK: HOOK protein; 52.8 4.5 9.9E-05 37.3 0.0 31 113-143 393-423 (713)
179 PF04645 DUF603: Protein of un 52.4 99 0.0022 24.0 7.2 59 66-134 103-161 (181)
180 COG1842 PspA Phage shock prote 52.0 1.2E+02 0.0027 24.2 9.3 87 59-145 36-133 (225)
181 PF07106 TBPIP: Tat binding pr 51.9 69 0.0015 23.9 6.4 23 74-96 115-137 (169)
182 PF07716 bZIP_2: Basic region 51.9 52 0.0011 19.9 5.3 34 55-95 19-52 (54)
183 PRK02224 chromosome segregatio 51.8 1.8E+02 0.0038 27.3 10.2 12 124-135 673-684 (880)
184 PRK00888 ftsB cell division pr 51.6 52 0.0011 23.1 5.3 30 115-144 31-60 (105)
185 KOG0999|consensus 51.5 1.8E+02 0.004 26.9 9.7 71 56-126 151-223 (772)
186 COG0172 SerS Seryl-tRNA synthe 51.4 89 0.0019 27.6 7.7 83 62-144 14-101 (429)
187 KOG4674|consensus 51.1 1.1E+02 0.0025 31.8 9.1 80 66-145 1104-1194(1822)
188 PF04977 DivIC: Septum formati 51.0 62 0.0013 20.5 6.2 30 115-144 21-50 (80)
189 PF06005 DUF904: Protein of un 50.8 70 0.0015 21.1 8.2 33 110-142 24-56 (72)
190 TIGR01795 CM_mono_cladeE monof 50.4 56 0.0012 22.5 5.2 34 112-145 4-37 (94)
191 PTZ00464 SNF-7-like protein; P 50.2 1.3E+02 0.0028 23.9 9.8 70 59-128 16-92 (211)
192 PF15070 GOLGA2L5: Putative go 49.1 2.2E+02 0.0047 26.4 10.1 61 65-125 40-101 (617)
193 TIGR01791 CM_archaeal chorisma 49.0 49 0.0011 21.8 4.6 27 112-138 7-33 (83)
194 PF10498 IFT57: Intra-flagella 48.8 1.2E+02 0.0027 25.9 8.0 33 62-94 242-275 (359)
195 KOG0963|consensus 48.8 2E+02 0.0042 26.7 9.6 33 63-95 177-209 (629)
196 PRK13922 rod shape-determining 48.5 46 0.00099 26.8 5.2 19 78-96 72-90 (276)
197 KOG0999|consensus 48.3 1.7E+02 0.0036 27.2 9.0 37 57-93 89-125 (772)
198 PF12325 TMF_TATA_bd: TATA ele 48.3 1E+02 0.0022 22.3 9.8 24 71-94 33-56 (120)
199 KOG4807|consensus 48.1 84 0.0018 27.8 6.9 71 64-145 473-543 (593)
200 PF04102 SlyX: SlyX; InterPro 47.9 74 0.0016 20.5 7.3 28 112-139 19-46 (69)
201 KOG0971|consensus 47.6 2E+02 0.0044 28.3 9.7 26 58-83 368-393 (1243)
202 PRK04325 hypothetical protein; 47.5 79 0.0017 20.8 7.9 12 80-91 7-18 (74)
203 KOG0250|consensus 47.5 1.3E+02 0.0028 29.7 8.6 31 111-141 337-367 (1074)
204 PRK09413 IS2 repressor TnpA; R 46.3 70 0.0015 22.6 5.4 35 112-146 72-106 (121)
205 PRK10636 putative ABC transpor 46.2 2E+02 0.0043 26.2 9.5 68 74-143 562-630 (638)
206 PF10498 IFT57: Intra-flagella 46.1 1.9E+02 0.0042 24.8 10.5 15 66-80 264-278 (359)
207 PF01576 Myosin_tail_1: Myosin 46.0 6.8 0.00015 37.2 0.0 84 62-145 188-277 (859)
208 TIGR01801 CM_A chorismate muta 45.9 64 0.0014 22.5 5.0 30 113-142 6-35 (102)
209 PF04999 FtsL: Cell division p 45.9 59 0.0013 21.9 4.8 28 111-138 42-69 (97)
210 TIGR01807 CM_P2 chorismate mut 45.7 60 0.0013 21.0 4.6 29 111-139 6-34 (76)
211 PRK09039 hypothetical protein; 45.6 1.9E+02 0.004 24.5 10.3 26 65-90 78-103 (343)
212 PF15397 DUF4618: Domain of un 45.6 1.7E+02 0.0037 24.1 9.8 64 60-126 69-135 (258)
213 PF10779 XhlA: Haemolysin XhlA 45.6 80 0.0017 20.3 5.1 35 61-95 6-40 (71)
214 PF15254 CCDC14: Coiled-coil d 45.5 2.1E+02 0.0045 27.4 9.4 14 108-121 491-504 (861)
215 PRK07075 isochorismate-pyruvat 45.4 1E+02 0.0022 21.4 6.1 36 110-145 7-42 (101)
216 KOG0995|consensus 45.3 1.7E+02 0.0036 26.9 8.6 35 58-92 235-269 (581)
217 PRK04863 mukB cell division pr 45.3 2.8E+02 0.0061 28.4 10.9 84 61-145 390-476 (1486)
218 KOG0978|consensus 45.2 1.7E+02 0.0036 27.6 8.7 33 112-144 567-599 (698)
219 COG5460 Uncharacterized conser 45.0 96 0.0021 21.0 8.8 62 58-127 6-69 (82)
220 PF11559 ADIP: Afadin- and alp 44.9 1.2E+02 0.0026 22.1 8.3 24 74-97 58-81 (151)
221 PF04899 MbeD_MobD: MbeD/MobD 44.7 89 0.0019 20.5 6.0 35 110-144 27-61 (70)
222 PF00769 ERM: Ezrin/radixin/mo 44.6 1.7E+02 0.0036 23.6 9.9 34 61-94 19-52 (246)
223 KOG2467|consensus 44.5 99 0.0021 27.3 6.8 68 45-124 398-467 (477)
224 PF14362 DUF4407: Domain of un 44.2 1.7E+02 0.0038 23.7 10.9 69 67-135 134-213 (301)
225 COG5104 PRP40 Splicing factor 44.2 47 0.001 29.7 4.8 55 67-124 327-381 (590)
226 PF10883 DUF2681: Protein of u 44.1 67 0.0014 22.1 4.7 25 74-98 22-46 (87)
227 TIGR01803 CM-like chorismate m 43.7 67 0.0015 21.2 4.6 30 115-144 3-32 (82)
228 PF05852 DUF848: Gammaherpesvi 43.5 1.4E+02 0.003 22.5 7.2 9 75-83 61-69 (146)
229 PF00804 Syntaxin: Syntaxin; 43.5 92 0.002 20.3 8.1 28 71-98 3-30 (103)
230 PF03962 Mnd1: Mnd1 family; I 43.5 1.5E+02 0.0033 22.9 11.2 62 64-127 65-126 (188)
231 TIGR01010 BexC_CtrB_KpsE polys 43.5 1.9E+02 0.0042 24.1 9.4 14 63-76 172-185 (362)
232 PF04102 SlyX: SlyX; InterPro 43.3 49 0.0011 21.3 3.8 35 61-95 18-52 (69)
233 PRK06569 F0F1 ATP synthase sub 43.1 1.5E+02 0.0031 22.5 7.2 52 80-132 39-91 (155)
234 KOG0994|consensus 43.0 1.7E+02 0.0037 29.6 8.6 76 60-135 1170-1256(1758)
235 PRK00409 recombination and DNA 43.0 2.2E+02 0.0048 26.9 9.4 17 108-124 574-590 (782)
236 PRK07248 hypothetical protein; 42.9 90 0.002 20.7 5.2 29 113-141 3-31 (87)
237 COG1605 PheA Chorismate mutase 42.8 86 0.0019 21.6 5.3 36 110-145 7-42 (101)
238 KOG3856|consensus 42.7 74 0.0016 23.5 5.0 32 113-144 12-43 (135)
239 PRK14127 cell division protein 42.6 69 0.0015 22.9 4.8 37 63-99 32-68 (109)
240 KOG2077|consensus 42.4 1.6E+02 0.0035 27.4 8.0 28 66-93 320-347 (832)
241 PF13166 AAA_13: AAA domain 42.4 2.7E+02 0.0058 25.4 10.5 32 62-93 371-402 (712)
242 PRK09239 chorismate mutase; Pr 42.4 94 0.002 21.8 5.4 36 110-145 9-44 (104)
243 PF07798 DUF1640: Protein of u 42.3 1.5E+02 0.0032 22.4 9.5 17 129-145 135-151 (177)
244 COG4026 Uncharacterized protei 42.2 1.3E+02 0.0029 24.5 6.8 58 81-144 111-168 (290)
245 COG1792 MreC Cell shape-determ 42.1 51 0.0011 27.2 4.6 28 66-93 81-108 (284)
246 PRK10265 chaperone-modulator p 41.9 37 0.0008 23.5 3.2 25 71-95 74-98 (101)
247 PF12128 DUF3584: Protein of u 41.7 2.1E+02 0.0045 28.4 9.3 9 68-76 352-360 (1201)
248 TIGR01005 eps_transp_fam exopo 41.6 2.7E+02 0.0058 25.7 9.7 61 81-141 207-267 (754)
249 PF10224 DUF2205: Predicted co 41.4 1.1E+02 0.0024 20.6 6.2 30 65-94 27-56 (80)
250 PF08581 Tup_N: Tup N-terminal 41.2 1.1E+02 0.0024 20.5 6.7 19 104-122 57-75 (79)
251 PF13874 Nup54: Nucleoporin co 40.8 88 0.0019 22.9 5.3 82 60-142 43-124 (141)
252 PF06160 EzrA: Septation ring 40.6 2.6E+02 0.0055 25.3 9.2 67 73-140 342-408 (560)
253 KOG0982|consensus 39.9 1.7E+02 0.0036 26.2 7.5 15 77-91 306-320 (502)
254 PRK13729 conjugal transfer pil 39.7 83 0.0018 28.1 5.8 23 112-134 98-120 (475)
255 PF08580 KAR9: Yeast cortical 39.7 1.5E+02 0.0033 27.7 7.7 52 80-133 247-298 (683)
256 PRK15422 septal ring assembly 39.7 1.2E+02 0.0026 20.5 8.8 62 76-145 12-73 (79)
257 COG1382 GimC Prefoldin, chaper 39.7 1.1E+02 0.0024 22.2 5.5 42 56-97 65-106 (119)
258 PF12240 Angiomotin_C: Angiomo 39.6 55 0.0012 26.0 4.2 21 110-130 63-83 (205)
259 PRK13729 conjugal transfer pil 39.6 59 0.0013 29.1 4.8 12 109-120 109-120 (475)
260 KOG3564|consensus 39.6 3E+02 0.0064 25.1 9.7 69 68-144 35-103 (604)
261 PF10046 BLOC1_2: Biogenesis o 39.3 1.3E+02 0.0027 20.7 8.4 78 64-142 10-93 (99)
262 PF15369 KIAA1328: Uncharacter 39.3 1.3E+02 0.0029 25.6 6.6 63 57-120 21-84 (328)
263 smart00787 Spc7 Spc7 kinetocho 39.2 2.3E+02 0.005 23.7 9.7 86 60-146 178-267 (312)
264 COG5005 Mu-like prophage prote 39.2 47 0.001 24.7 3.5 41 35-75 98-139 (140)
265 PF10211 Ax_dynein_light: Axon 39.1 1.3E+02 0.0028 23.2 6.2 17 78-94 130-146 (189)
266 KOG4848|consensus 38.9 2E+02 0.0043 22.9 8.7 82 61-143 96-178 (225)
267 TIGR01069 mutS2 MutS2 family p 38.8 2.1E+02 0.0045 27.1 8.5 13 110-122 571-583 (771)
268 TIGR03007 pepcterm_ChnLen poly 38.6 2.6E+02 0.0057 24.2 9.5 35 60-94 260-294 (498)
269 PF15276 PP1_bind: Protein pho 38.3 23 0.00049 23.1 1.6 16 5-20 27-42 (64)
270 COG1382 GimC Prefoldin, chaper 38.3 1.6E+02 0.0034 21.5 11.3 87 57-145 9-104 (119)
271 TIGR01799 CM_T chorismate muta 38.2 82 0.0018 20.8 4.4 29 111-139 6-34 (83)
272 PF10226 DUF2216: Uncharacteri 38.1 2E+02 0.0043 22.7 7.8 71 57-130 54-134 (195)
273 PF04420 CHD5: CHD5-like prote 37.8 1.7E+02 0.0037 21.9 7.6 60 78-140 36-95 (161)
274 PF10393 Matrilin_ccoil: Trime 37.8 56 0.0012 19.9 3.1 22 61-82 23-44 (47)
275 PF09726 Macoilin: Transmembra 37.7 3.5E+02 0.0076 25.4 11.2 18 56-73 483-500 (697)
276 PF09006 Surfac_D-trimer: Lung 37.5 96 0.0021 18.8 5.0 26 113-138 1-26 (46)
277 PRK04778 septation ring format 37.5 2.3E+02 0.005 25.5 8.4 52 73-124 315-368 (569)
278 KOG3156|consensus 37.4 1.7E+02 0.0036 23.6 6.6 18 128-145 177-194 (220)
279 KOG2751|consensus 37.3 2.6E+02 0.0056 24.9 8.3 19 58-76 150-168 (447)
280 KOG0976|consensus 37.1 2.9E+02 0.0062 27.0 8.9 26 73-98 90-115 (1265)
281 KOG4593|consensus 37.1 3.6E+02 0.0078 25.5 9.5 36 62-97 238-273 (716)
282 PF11577 NEMO: NF-kappa-B esse 37.0 1.2E+02 0.0026 19.8 5.4 47 79-126 21-67 (68)
283 PRK13169 DNA replication intia 36.9 1.3E+02 0.0028 21.5 5.5 34 61-94 22-55 (110)
284 TIGR02680 conserved hypothetic 36.7 4E+02 0.0086 26.9 10.5 24 111-134 333-356 (1353)
285 TIGR01554 major_cap_HK97 phage 36.7 2.6E+02 0.0056 23.5 8.7 12 57-68 9-20 (378)
286 KOG0561|consensus 36.1 84 0.0018 26.8 4.9 18 55-72 64-81 (373)
287 PF15254 CCDC14: Coiled-coil d 36.0 4E+02 0.0088 25.6 9.7 20 126-145 495-514 (861)
288 PF07798 DUF1640: Protein of u 35.8 1.9E+02 0.0042 21.8 8.7 36 54-89 69-105 (177)
289 TIGR01843 type_I_hlyD type I s 35.7 2.6E+02 0.0056 23.2 11.3 24 66-89 149-172 (423)
290 TIGR01805 CM_mono_grmpos monof 35.6 1.1E+02 0.0023 20.1 4.6 30 110-139 5-34 (81)
291 KOG0837|consensus 35.5 1.9E+02 0.0041 24.0 6.8 59 56-123 200-260 (279)
292 KOG1655|consensus 35.4 2.3E+02 0.005 22.6 8.4 64 62-125 20-91 (218)
293 PF10046 BLOC1_2: Biogenesis o 35.2 1.1E+02 0.0024 21.0 4.8 66 57-130 20-85 (99)
294 PF10212 TTKRSYEDQ: Predicted 35.1 3.5E+02 0.0075 24.6 10.1 33 113-145 482-514 (518)
295 KOG0612|consensus 35.1 4.4E+02 0.0095 26.7 10.1 9 11-19 396-404 (1317)
296 PF10482 CtIP_N: Tumour-suppre 35.0 1.8E+02 0.0039 21.2 9.0 73 68-141 35-119 (120)
297 smart00340 HALZ homeobox assoc 34.6 1E+02 0.0023 18.4 3.9 26 114-139 8-33 (44)
298 PF01442 Apolipoprotein: Apoli 34.5 1.8E+02 0.0038 21.0 7.3 15 63-77 113-127 (202)
299 PF05622 HOOK: HOOK protein; 34.5 13 0.00028 34.3 0.0 71 73-143 330-402 (713)
300 KOG3119|consensus 34.4 1.5E+02 0.0032 24.2 6.2 32 114-145 218-249 (269)
301 PF12709 Kinetocho_Slk19: Cent 34.3 73 0.0016 22.0 3.6 22 110-131 62-83 (87)
302 TIGR01005 eps_transp_fam exopo 34.3 3.8E+02 0.0082 24.8 9.5 18 76-93 317-334 (754)
303 PF13851 GAS: Growth-arrest sp 34.2 2.2E+02 0.0049 22.1 10.2 63 75-138 62-127 (201)
304 COG4942 Membrane-bound metallo 34.2 1.9E+02 0.0042 25.5 7.1 64 70-134 47-110 (420)
305 PF11500 Cut12: Spindle pole b 34.0 1E+02 0.0022 23.4 4.7 31 63-93 107-137 (152)
306 KOG3990|consensus 33.9 2.8E+02 0.006 23.1 11.4 30 108-137 263-293 (305)
307 PF09726 Macoilin: Transmembra 33.9 4E+02 0.0088 25.0 9.9 34 110-143 621-654 (697)
308 PF08641 Mis14: Kinetochore pr 33.8 1.5E+02 0.0033 21.6 5.6 45 75-122 40-84 (139)
309 KOG0996|consensus 33.7 3.4E+02 0.0074 27.3 9.1 24 70-93 386-409 (1293)
310 PF10174 Cast: RIM-binding pro 33.4 4.4E+02 0.0094 25.2 10.6 80 62-141 309-408 (775)
311 TIGR03017 EpsF chain length de 33.2 3E+02 0.0066 23.4 11.1 43 79-122 258-300 (444)
312 PF09789 DUF2353: Uncharacteri 33.1 3E+02 0.0066 23.3 9.7 35 60-94 78-112 (319)
313 KOG4343|consensus 33.0 1E+02 0.0023 28.2 5.3 46 52-97 293-338 (655)
314 PF10168 Nup88: Nuclear pore c 33.0 4.2E+02 0.0092 24.9 11.6 21 106-126 634-654 (717)
315 PF12711 Kinesin-relat_1: Kine 32.8 1.6E+02 0.0036 20.1 8.2 50 71-122 13-62 (86)
316 TIGR02473 flagell_FliJ flagell 32.7 1.8E+02 0.0038 20.5 11.3 37 105-141 62-98 (141)
317 TIGR01797 CM_P_1 chorismate mu 32.7 1.3E+02 0.0027 19.9 4.6 29 111-139 6-34 (83)
318 cd07429 Cby_like Chibby, a nuc 32.6 55 0.0012 23.4 2.9 22 76-97 80-101 (108)
319 PF04582 Reo_sigmaC: Reovirus 32.6 69 0.0015 27.3 4.0 37 109-145 110-146 (326)
320 KOG0933|consensus 32.4 4.2E+02 0.009 26.4 9.3 8 135-142 867-874 (1174)
321 PF14916 CCDC92: Coiled-coil d 32.4 73 0.0016 20.4 3.2 18 112-129 22-39 (60)
322 COG3524 KpsE Capsule polysacch 32.4 1.5E+02 0.0032 25.4 5.9 42 78-120 226-267 (372)
323 PF12711 Kinesin-relat_1: Kine 32.2 1.5E+02 0.0033 20.3 5.0 37 107-144 27-63 (86)
324 PLN02678 seryl-tRNA synthetase 32.0 3.6E+02 0.0078 23.8 8.9 73 68-140 33-107 (448)
325 PF07889 DUF1664: Protein of u 31.7 2.1E+02 0.0045 20.9 9.8 63 74-144 52-115 (126)
326 COG2900 SlyX Uncharacterized p 31.6 1.6E+02 0.0034 19.6 8.1 35 110-144 21-55 (72)
327 PLN03237 DNA topoisomerase 2; 31.6 3.2E+02 0.007 28.0 8.8 60 75-140 1126-1185(1465)
328 TIGR01004 PulS_OutS lipoprotei 31.4 45 0.00098 24.6 2.4 21 58-78 105-125 (128)
329 PF15188 CCDC-167: Coiled-coil 31.4 1.7E+02 0.0037 20.0 6.3 19 62-80 6-24 (85)
330 KOG1103|consensus 31.4 3.6E+02 0.0078 23.6 10.6 67 80-146 112-181 (561)
331 KOG2391|consensus 31.3 3.5E+02 0.0075 23.4 9.1 27 71-97 213-240 (365)
332 PRK05689 fliJ flagellar biosyn 31.2 2E+02 0.0044 20.6 11.2 81 59-141 21-101 (147)
333 PRK11147 ABC transporter ATPas 31.0 2.9E+02 0.0063 25.1 8.0 59 76-136 569-627 (635)
334 KOG3119|consensus 30.8 52 0.0011 26.9 2.9 22 75-96 222-243 (269)
335 TIGR02231 conserved hypothetic 30.8 3.3E+02 0.0072 24.0 8.2 29 110-138 144-172 (525)
336 PF10174 Cast: RIM-binding pro 30.8 4.8E+02 0.01 24.9 10.1 10 126-135 122-131 (775)
337 PF04871 Uso1_p115_C: Uso1 / p 30.7 2.2E+02 0.0047 20.9 10.6 34 60-96 14-48 (136)
338 PRK10803 tol-pal system protei 30.4 2.2E+02 0.0047 23.1 6.5 19 112-130 69-87 (263)
339 PRK07720 fliJ flagellar biosyn 30.4 2.1E+02 0.0045 20.6 11.3 79 60-140 22-100 (146)
340 PF06160 EzrA: Septation ring 30.3 4.1E+02 0.0089 24.0 8.9 59 80-139 276-334 (560)
341 KOG3977|consensus 30.1 2.8E+02 0.0062 22.0 8.0 45 103-147 87-138 (221)
342 cd00632 Prefoldin_beta Prefold 30.0 1.8E+02 0.004 19.9 10.5 86 60-145 5-97 (105)
343 PRK09841 cryptic autophosphory 29.9 3E+02 0.0065 25.5 8.0 29 63-98 269-297 (726)
344 PF12308 Noelin-1: Neurogenesi 29.8 1.1E+02 0.0024 21.6 4.0 36 61-96 54-89 (101)
345 PF15397 DUF4618: Domain of un 29.8 3.2E+02 0.0069 22.5 10.0 72 60-131 15-101 (258)
346 PF04912 Dynamitin: Dynamitin 29.7 2.7E+02 0.0058 23.8 7.2 35 61-95 322-356 (388)
347 TIGR00634 recN DNA repair prot 29.7 4.1E+02 0.009 23.8 9.7 31 63-93 282-312 (563)
348 PF13815 Dzip-like_N: Iguana/D 29.6 1.7E+02 0.0036 20.7 5.1 13 80-92 78-90 (118)
349 PF13600 DUF4140: N-terminal d 29.6 1.8E+02 0.0039 19.6 5.4 33 110-142 69-101 (104)
350 KOG0709|consensus 29.6 4.2E+02 0.009 23.8 9.5 89 55-143 221-318 (472)
351 PF11262 Tho2: Transcription f 29.4 1.8E+02 0.004 24.0 6.0 19 110-128 52-70 (298)
352 PF15450 DUF4631: Domain of un 29.4 4.3E+02 0.0093 24.1 8.5 27 108-134 409-435 (531)
353 PF05701 WEMBL: Weak chloropla 28.9 4.2E+02 0.0092 23.7 8.9 61 62-123 296-356 (522)
354 PF07794 DUF1633: Protein of u 28.8 2.9E+02 0.0063 25.4 7.3 36 109-144 682-717 (790)
355 PRK10803 tol-pal system protei 28.7 1.1E+02 0.0024 24.8 4.5 27 112-138 76-102 (263)
356 PF09789 DUF2353: Uncharacteri 28.7 3.6E+02 0.0079 22.9 12.0 25 70-94 74-98 (319)
357 KOG0933|consensus 28.6 6E+02 0.013 25.3 10.4 34 110-143 793-826 (1174)
358 KOG1937|consensus 28.5 4.4E+02 0.0096 23.7 9.2 65 67-136 251-318 (521)
359 PF02183 HALZ: Homeobox associ 28.3 1.4E+02 0.003 17.8 5.4 31 111-141 12-42 (45)
360 KOG2398|consensus 28.3 3.5E+02 0.0076 25.0 8.0 23 61-83 109-131 (611)
361 KOG4673|consensus 28.3 2.8E+02 0.0061 26.5 7.3 77 63-145 868-945 (961)
362 KOG1003|consensus 28.0 3.1E+02 0.0067 21.8 9.5 76 63-139 118-193 (205)
363 PF12777 MT: Microtubule-bindi 28.0 86 0.0019 26.3 3.9 28 110-137 248-275 (344)
364 KOG0249|consensus 27.9 3.6E+02 0.0078 25.8 8.0 26 71-96 159-184 (916)
365 PF09763 Sec3_C: Exocyst compl 27.5 4E+02 0.0087 24.5 8.4 43 103-145 50-92 (701)
366 KOG4593|consensus 27.3 1.5E+02 0.0032 27.9 5.4 43 56-98 280-322 (716)
367 PF14712 Snapin_Pallidin: Snap 27.3 1.9E+02 0.0041 19.1 9.0 29 109-137 62-90 (92)
368 COG3883 Uncharacterized protei 27.2 1.7E+02 0.0037 24.2 5.3 9 85-93 55-63 (265)
369 PRK01156 chromosome segregatio 26.9 5.4E+02 0.012 24.3 10.2 26 114-139 684-709 (895)
370 PRK04863 mukB cell division pr 26.9 7E+02 0.015 25.7 10.4 16 66-81 312-327 (1486)
371 KOG0946|consensus 26.8 2.6E+02 0.0056 27.1 6.9 24 112-135 672-695 (970)
372 PF10234 Cluap1: Clusterin-ass 26.6 3.7E+02 0.008 22.2 9.7 65 60-124 168-238 (267)
373 COG1340 Uncharacterized archae 26.5 3.9E+02 0.0085 22.5 10.0 19 112-130 201-219 (294)
374 PRK15422 septal ring assembly 26.4 2.1E+02 0.0046 19.3 5.3 37 58-94 25-65 (79)
375 KOG0018|consensus 26.2 3.3E+02 0.0072 27.1 7.6 85 51-147 764-848 (1141)
376 KOG0964|consensus 26.2 5.5E+02 0.012 25.6 9.0 15 61-75 272-286 (1200)
377 COG4118 Phd Antitoxin of toxin 26.2 58 0.0012 22.1 2.1 20 62-81 6-25 (84)
378 PF10139 Virul_Fac: Putative b 26.2 1.9E+02 0.0041 27.9 6.1 38 61-98 529-570 (854)
379 TIGR03007 pepcterm_ChnLen poly 26.1 4.3E+02 0.0094 22.9 10.4 60 81-140 174-233 (498)
380 PF12808 Mto2_bdg: Micro-tubul 25.9 96 0.0021 19.3 2.8 21 75-95 29-49 (52)
381 KOG0979|consensus 25.9 5.3E+02 0.011 25.6 8.9 89 56-144 257-351 (1072)
382 COG4477 EzrA Negative regulato 25.8 5.2E+02 0.011 23.7 8.7 63 75-138 347-409 (570)
383 PF09606 Med15: ARC105 or Med1 25.7 23 0.0005 33.6 0.0 32 111-142 568-600 (799)
384 PF13870 DUF4201: Domain of un 25.6 2.9E+02 0.0063 20.6 9.1 39 61-99 98-136 (177)
385 PRK11546 zraP zinc resistance 25.6 2.6E+02 0.0057 20.9 5.6 16 107-122 57-72 (143)
386 COG3685 Uncharacterized protei 25.4 3.2E+02 0.0069 21.1 6.2 58 62-124 2-59 (167)
387 PRK10869 recombination and rep 25.4 5E+02 0.011 23.4 9.4 32 60-91 274-305 (553)
388 PHA02682 ORF080 virion core pr 24.9 1.6E+02 0.0034 23.7 4.5 44 68-122 215-258 (280)
389 PF10481 CENP-F_N: Cenp-F N-te 24.8 4.2E+02 0.0091 22.3 9.9 77 62-138 96-189 (307)
390 PF04728 LPP: Lipoprotein leuc 24.8 1.9E+02 0.0041 18.3 5.9 25 112-136 25-49 (56)
391 KOG3270|consensus 24.7 3.9E+02 0.0085 21.9 7.0 33 111-143 115-147 (244)
392 KOG4571|consensus 24.6 2.2E+02 0.0049 23.9 5.6 11 110-120 275-285 (294)
393 PHA02682 ORF080 virion core pr 24.4 2.4E+02 0.0052 22.7 5.5 43 103-145 207-253 (280)
394 PF12057 DUF3538: Domain of un 24.3 77 0.0017 23.1 2.5 20 61-80 6-25 (120)
395 PRK10361 DNA recombination pro 24.2 5.2E+02 0.011 23.2 9.5 91 57-147 56-155 (475)
396 PF14584 DUF4446: Protein of u 24.1 1.3E+02 0.0029 22.5 3.9 34 65-98 43-76 (151)
397 PRK14127 cell division protein 23.9 2.7E+02 0.0059 19.8 6.2 22 122-143 41-62 (109)
398 PF10359 Fmp27_WPPW: RNA pol I 23.9 3.9E+02 0.0085 23.6 7.4 66 58-136 160-225 (475)
399 KOG0976|consensus 23.8 6.4E+02 0.014 24.8 8.8 16 75-90 270-285 (1265)
400 KOG4603|consensus 23.7 3.6E+02 0.0079 21.1 6.9 19 78-96 82-100 (201)
401 PRK00295 hypothetical protein; 23.6 2.1E+02 0.0046 18.4 8.0 7 85-91 8-14 (68)
402 PRK02793 phi X174 lysis protei 23.6 2.2E+02 0.0047 18.5 8.0 9 83-91 9-17 (72)
403 KOG1850|consensus 23.5 4.8E+02 0.01 22.5 8.7 83 62-144 237-325 (391)
404 PRK11519 tyrosine kinase; Prov 23.4 5.2E+02 0.011 24.0 8.3 13 62-74 268-280 (719)
405 PF11290 DUF3090: Protein of u 23.4 76 0.0016 24.6 2.4 24 57-80 36-59 (171)
406 TIGR00606 rad50 rad50. This fa 23.3 7.6E+02 0.017 24.7 12.0 26 113-138 314-339 (1311)
407 PF06273 eIF-4B: Plant specifi 22.8 5.7E+02 0.012 23.1 10.4 12 49-60 328-339 (492)
408 PF07889 DUF1664: Protein of u 22.7 3.1E+02 0.0068 20.0 8.3 73 62-145 51-123 (126)
409 COG1792 MreC Cell shape-determ 22.6 3.5E+02 0.0077 22.2 6.5 19 78-96 69-87 (284)
410 COG3599 DivIVA Cell division i 22.5 4E+02 0.0086 21.2 8.3 31 67-97 36-66 (212)
411 KOG3000|consensus 22.4 4.3E+02 0.0092 22.2 6.9 38 58-95 195-232 (295)
412 PF06637 PV-1: PV-1 protein (P 22.4 5.4E+02 0.012 22.7 9.1 26 119-144 343-368 (442)
413 PF10779 XhlA: Haemolysin XhlA 22.3 2.2E+02 0.0048 18.2 5.6 16 110-125 33-48 (71)
414 PRK13182 racA polar chromosome 22.2 3.7E+02 0.0079 20.6 7.3 18 111-128 125-142 (175)
415 KOG3612|consensus 22.0 4.6E+02 0.0099 24.1 7.3 55 78-132 456-510 (588)
416 KOG4637|consensus 21.8 5.6E+02 0.012 22.6 8.0 20 61-80 188-207 (464)
417 PF13591 MerR_2: MerR HTH fami 21.7 82 0.0018 20.9 2.1 18 71-88 66-83 (84)
418 PRK03947 prefoldin subunit alp 21.7 3.1E+02 0.0067 19.6 9.9 37 108-144 98-134 (140)
419 PRK13922 rod shape-determining 21.6 1.8E+02 0.0039 23.3 4.5 15 78-92 79-93 (276)
420 PRK14154 heat shock protein Gr 21.4 2.9E+02 0.0064 21.9 5.5 28 111-138 59-86 (208)
421 PF13094 CENP-Q: CENP-Q, a CEN 21.2 3.4E+02 0.0074 19.9 6.4 58 72-130 24-81 (160)
422 PRK04406 hypothetical protein; 21.2 2.6E+02 0.0055 18.4 8.0 18 63-80 6-23 (75)
423 PF05557 MAD: Mitotic checkpoi 21.0 1.9E+02 0.0042 26.7 5.1 35 109-143 501-535 (722)
424 PF10158 LOH1CR12: Tumour supp 21.0 3.2E+02 0.0069 20.0 5.3 21 74-94 55-75 (131)
425 TIGR00634 recN DNA repair prot 20.9 6E+02 0.013 22.8 8.0 12 62-73 302-313 (563)
426 PRK14156 heat shock protein Gr 20.5 3.6E+02 0.0079 20.8 5.7 17 80-96 32-48 (177)
427 PRK14140 heat shock protein Gr 20.4 2.5E+02 0.0054 21.9 4.9 16 80-95 42-57 (191)
428 PF06632 XRCC4: DNA double-str 20.3 5.5E+02 0.012 21.9 10.2 87 60-147 129-216 (342)
429 PRK01156 chromosome segregatio 20.3 7.4E+02 0.016 23.4 9.7 34 112-145 410-443 (895)
430 PHA02109 hypothetical protein 20.2 3.1E+02 0.0067 21.6 5.3 34 111-144 193-226 (233)
431 PF12777 MT: Microtubule-bindi 20.2 2E+02 0.0044 24.1 4.7 7 65-71 246-252 (344)
432 PF10168 Nup88: Nuclear pore c 20.1 7.4E+02 0.016 23.3 9.5 31 110-140 684-714 (717)
433 PF09340 NuA4: Histone acetylt 20.1 2.1E+02 0.0046 19.0 3.9 25 70-94 4-28 (80)
434 PF15450 DUF4631: Domain of un 20.1 6.7E+02 0.015 22.9 9.8 42 102-143 231-276 (531)
435 PF03317 ELF: ELF protein; In 20.0 3.8E+02 0.0083 21.6 5.8 33 66-99 186-218 (284)
No 1
>KOG0977|consensus
Probab=99.90 E-value=3.4e-23 Score=180.96 Aligned_cols=111 Identities=35% Similarity=0.444 Sum_probs=103.7
Q ss_pred CCCCCCCCCCCCCChhhhhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHH
Q psy20 37 QPQSQPPRPGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDI 116 (147)
Q Consensus 37 ~~~s~~~~~~~~~~~~~~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~l 116 (147)
+|.+++..++.|..+++..|.+||++|+.||||||.|||||||||++|+.|+.+|..++...+.+.+.++..|+.+|..+
T Consensus 18 ~~tssg~~~~~~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~a 97 (546)
T KOG0977|consen 18 SSTSSGVSASNAASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATA 97 (546)
T ss_pred CccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHH
Confidence 44455555788899999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy20 117 RKALDRESSSKSALAIEKRRLLDELLDLKNK 147 (147)
Q Consensus 117 R~~v~~l~~ek~~l~le~~~l~~~~ed~r~K 147 (147)
|..|++...++++++++++.++.++++|+.|
T Consensus 98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~ 128 (546)
T KOG0977|consen 98 RKLLDETARERAKLEIEITKLREELKELRKK 128 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999864
No 2
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.87 E-value=5e-22 Score=163.08 Aligned_cols=90 Identities=38% Similarity=0.581 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
+||++|++||||||+||+|||+||++|+.|+.+|..+....++.++.++..|+.+|.++|.+|+.+..++++++++++++
T Consensus 1 ~EK~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 1 NEKEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 68999999999999999999999999999999999999987666778999999999999999999999999999999999
Q ss_pred HHHHHhhhcC
Q psy20 138 LDELLDLKNK 147 (147)
Q Consensus 138 ~~~~ed~r~K 147 (147)
+.++++|+.|
T Consensus 81 ~~e~~~~r~k 90 (312)
T PF00038_consen 81 KEELEDLRRK 90 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999853
No 3
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=94.39 E-value=0.42 Score=42.26 Aligned_cols=85 Identities=14% Similarity=0.223 Sum_probs=65.2
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
.++|..|-.++-..=.++..|+.+|+.|..+.+.|+.+...-..++......+-.++..+.+.+..+...++..++.++.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777888889999999998888776543345666666667777888888888888888888888887
Q ss_pred HHHhh
Q psy20 140 ELLDL 144 (147)
Q Consensus 140 ~~ed~ 144 (147)
.++++
T Consensus 138 ~l~~~ 142 (472)
T TIGR03752 138 RLAGV 142 (472)
T ss_pred HHhhc
Confidence 77654
No 4
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=92.56 E-value=1.2 Score=34.35 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=42.5
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
.+|+..+|.+...+|+....+..+.....................++++++.+|.....|...|..|.+++..+-
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555555554444444332221111001122344577888888888888888888888887776653
No 5
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=92.44 E-value=0.85 Score=31.78 Aligned_cols=91 Identities=15% Similarity=0.269 Sum_probs=57.4
Q ss_pred hhhHhHHHHHHHHHhh--HHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHH--HHHHHHHHHHHHHHHHHHH
Q psy20 54 ISRRQEKNELKNLNDR--LAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASE--KEIEDIRKALDRESSSKSA 129 (147)
Q Consensus 54 ~~r~~EKe~mq~LNdR--LA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye--~ei~~lR~~v~~l~~ek~~ 129 (147)
..+.+--.-.+.|..| ....++.+..|.++.+.|..+++.++.....-...+..... .....+..++..+..+-..
T Consensus 6 ~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~ 85 (108)
T PF02403_consen 6 LIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKE 85 (108)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH
Confidence 3455555566777777 56789999999999999999999988776421222222222 1344555555556666666
Q ss_pred HHHHHHHHHHHHHhh
Q psy20 130 LAIEKRRLLDELLDL 144 (147)
Q Consensus 130 l~le~~~l~~~~ed~ 144 (147)
++.++..+..+++.+
T Consensus 86 le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 86 LEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655543
No 6
>KOG4673|consensus
Probab=92.39 E-value=4.6 Score=37.70 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=66.1
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHH-----HHHHhhcC-CcccCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSL-----YSIEESHT-TEFKKVKAASEKEIEDIRKALDRESSSKSA 129 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki-----~~l~~~~~-~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~ 129 (147)
-..=++++..||+.|-.-=...-.+|.+|..|+... ..++.+.. ...+.+...|-.-|..|-+.|..+.+++..
T Consensus 348 LdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDa 427 (961)
T KOG4673|consen 348 LDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDA 427 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345577899999999866666666777777777632 22333222 236788899999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy20 130 LAIEKRRLLDELL 142 (147)
Q Consensus 130 l~le~~~l~~~~e 142 (147)
+..++.+++.++.
T Consensus 428 lr~e~kslk~ela 440 (961)
T KOG4673|consen 428 LRREQKSLKKELA 440 (961)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 7
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=91.71 E-value=2.4 Score=27.68 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=31.7
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
+++.|.+++.-.|..+..|..+|..|..+...|...
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999998777553
No 8
>PRK11546 zraP zinc resistance protein; Provisional
Probab=91.15 E-value=3.3 Score=31.12 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESS 125 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ 125 (147)
.+.-+.++.+.+.|. .+.-.|-++-..-..+++.+.....++...+..+ ..||.+||.++++.-.
T Consensus 46 ~EQQa~~q~I~~~f~---~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL-~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 46 TEQQAAWQKIHNDFY---AQTSALRQQLVSKRYEYNALLTANPPDSSKINAV-AKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345567888876665 5777777777777888888877776655566666 6789999998876544
No 9
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.74 E-value=3.3 Score=34.65 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
.-.++++.|..--...+..+..||.++..|..++..+..... ........|....+.+..++.....+...+..++..+
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~-~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE-ELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666777888888888888888887766543 2223334566677788888888888888888888888
Q ss_pred HHHHHhhhc
Q psy20 138 LDELLDLKN 146 (147)
Q Consensus 138 ~~~~ed~r~ 146 (147)
...++.++.
T Consensus 126 ~~~L~~L~k 134 (314)
T PF04111_consen 126 SNQLDRLRK 134 (314)
T ss_dssp HHHHHCHHT
T ss_pred HHHHHHHHh
Confidence 888887763
No 10
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.53 E-value=2.3 Score=33.69 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=11.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~ 95 (147)
+++-.||++...|..++..+.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555543
No 11
>PRK11020 hypothetical protein; Provisional
Probab=90.44 E-value=0.84 Score=33.00 Aligned_cols=16 Identities=56% Similarity=0.752 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhHHHH
Q psy20 58 QEKNELKNLNDRLAQY 73 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~Y 73 (147)
++|.+||.|||||-.+
T Consensus 2 ~~K~Eiq~L~drLD~~ 17 (118)
T PRK11020 2 VEKNEIKRLSDRLDAI 17 (118)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6899999999999654
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.05 E-value=1.6 Score=38.45 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=55.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhhcCC---cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 74 IELVQKLQNDKASLEYSLYSIEESHTT---EFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~~~~~---~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
-++++.++++...|..++..+...... ........+...+.+++.+++.+..+...++.++++++.++.+++
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778888888888888887665431 122344455667889999999999999999999999999988874
No 13
>KOG0977|consensus
Probab=89.97 E-value=1.1 Score=40.47 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 59 EKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 59 EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
=+|++..+..++-..=-|+..||..|..|+.+|..|.-... .....|+..|.+.-.+|..+-.+...+.+|+..|
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~----e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD----EDQRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh----hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788888888988889999999999999999999887643 3345566655555555555555555555554443
No 14
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.66 E-value=3.5 Score=33.46 Aligned_cols=85 Identities=26% Similarity=0.280 Sum_probs=40.3
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCC------ccc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTT------EFK--KVKAASEKEIEDIRKALDRESSSKSALA 131 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~------~~~--~~~~~ye~ei~~lR~~v~~l~~ek~~l~ 131 (147)
+.++-.+|+.|..--..+-.|+.+-..++.+|..++.+... ... +-...+..++..+...+..+..+-..+.
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666555555555555555555555554444321 111 1122334455555555555555555555
Q ss_pred HHHHHHHHHHHhh
Q psy20 132 IEKRRLLDELLDL 144 (147)
Q Consensus 132 le~~~l~~~~ed~ 144 (147)
-++.++..+++++
T Consensus 117 ~~~~~l~~~i~~l 129 (239)
T COG1579 117 EEIEKLEKEIEDL 129 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544444
No 15
>KOG4196|consensus
Probab=89.49 E-value=4.8 Score=29.80 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=52.6
Q ss_pred HHHHhhHHHH-HhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 64 KNLNDRLAQY-IELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 64 q~LNdRLA~Y-IekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
..||.+|-.+ -|.|-.|-|.-+.|...--...-... ...-+...|++-..|.++|+.+..|++++..|+|.++...+
T Consensus 35 ReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~K--Rv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 35 RELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVK--RVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888776 46677776666655443211111000 11123445777789999999999999999999999988776
Q ss_pred hh
Q psy20 143 DL 144 (147)
Q Consensus 143 d~ 144 (147)
.+
T Consensus 113 ~l 114 (135)
T KOG4196|consen 113 AL 114 (135)
T ss_pred HH
Confidence 54
No 16
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.15 E-value=6.5 Score=31.43 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=22.3
Q ss_pred HHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 65 NLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 65 ~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
++|++|...-.....+-.+|..|..+|..+.+
T Consensus 17 C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 17 CVNNRLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777776554
No 17
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=89.05 E-value=4.9 Score=35.58 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=52.2
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC-------------C-c---ccCchHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHT-------------T-E---FKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~-------------~-~---~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
.++.|.+++...-+.+..++.+...++.++..|..-.. . . ...+...|..++..++..+.++.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444545555555555555544433220 0 0 12334567778888999998999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy20 125 SSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 125 ~ek~~l~le~~~l~~~~ed~r 145 (147)
.+...+..++..++.++..+.
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 988899999998888887663
No 18
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.58 E-value=9 Score=29.06 Aligned_cols=36 Identities=33% Similarity=0.425 Sum_probs=21.0
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.+++.++.++..+-++.-.++..+..+..++..++.
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666655655666666666665555443
No 19
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.46 E-value=6.1 Score=29.73 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=32.4
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
.++|..|+..+...-+.+..|+.+++.|+.++..+....
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456778887888888899999999999999998887654
No 20
>KOG0971|consensus
Probab=88.39 E-value=2.5 Score=40.41 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
-++++..+..+.++.+.+.+|..+++++...+.||+
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666667777777777777777665
No 21
>KOG0288|consensus
Probab=88.31 E-value=10 Score=33.27 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~l 132 (147)
..-++-+..||.++|.+-.++-.|-.|+..|.++...+..+- ..-|.+|++|+.....+..+..+...
T Consensus 9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~--------~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKL--------QEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667889999999999999999999999998887765543 23366677777666666655544433
No 22
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.24 E-value=14 Score=30.93 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
+.++..+++.+.+...+-.++.-.++.++.++++++
T Consensus 125 eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 125 EETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555544
No 23
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.96 E-value=8.8 Score=30.46 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=53.5
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 64 KNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 64 q~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
..|..+...|+++|..+++....|-.....-...-..+...++.-+.+++..|++.|........-|+.++..-..+.++
T Consensus 114 E~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~E 193 (207)
T PF05010_consen 114 ETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEE 193 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999988887765544433332223556677777888888888877766666666555544444443
No 24
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.92 E-value=13 Score=30.27 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=16.2
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSL 91 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki 91 (147)
..+..++-.+..|=..|..+|.+-..+..++
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444443
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=86.70 E-value=11 Score=30.03 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=37.4
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRES-------SSKSALAIEKRRLLD 139 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~-------~ek~~l~le~~~l~~ 139 (147)
..|+...=.+|..||.+...+...+..+..... ....--..|+..|..|..++..+. .....|+.+++.+..
T Consensus 133 EeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~-~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~ 211 (237)
T PF00261_consen 133 EERAEAAESKIKELEEELKSVGNNLKSLEASEE-KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLED 211 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444333333222 112223567777777777776544 334455555555555
Q ss_pred HHHhhh
Q psy20 140 ELLDLK 145 (147)
Q Consensus 140 ~~ed~r 145 (147)
++...+
T Consensus 212 eL~~~k 217 (237)
T PF00261_consen 212 ELEKEK 217 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 26
>KOG2264|consensus
Probab=86.45 E-value=2.8 Score=38.38 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=53.5
Q ss_pred HHHHHHHHhhHHHH--HhhhhhhHHHHHHHHHHHHHH---HhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQY--IELVQKLQNDKASLEYSLYSI---EESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEK 134 (147)
Q Consensus 60 Ke~mq~LNdRLA~Y--IekVR~LE~~N~~Le~ki~~l---~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~ 134 (147)
|..+..+.++.++| ..-+|.++.+.+.+++--.+| ..+.. +-...-..|...|+++++.|.....|-.+|+.++
T Consensus 59 ~~~~~~~~p~~~s~~~~s~~r~~~e~~RI~~sVs~EL~ele~krq-el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 59 KQNIENLDPYDASCSGYSIGRILREQKRILASVSLELTELEVKRQ-ELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred hhcccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 34455566666644 455677777777666533333 22222 1112223456677788888888888888888888
Q ss_pred HHHHHHHHhhhc
Q psy20 135 RRLLDELLDLKN 146 (147)
Q Consensus 135 ~~l~~~~ed~r~ 146 (147)
...+...++++.
T Consensus 138 eqaq~~~~El~~ 149 (907)
T KOG2264|consen 138 EQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHh
Confidence 888888887753
No 27
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.12 E-value=12 Score=33.62 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=33.2
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.-++-+.+++-|++|..-|..++.+-+..+.|+.+|..++.
T Consensus 269 i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~ 309 (622)
T COG5185 269 INTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKS 309 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666778888999999999999998888888888877643
No 28
>PRK11637 AmiB activator; Provisional
Probab=86.07 E-value=8.3 Score=33.26 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
+.+|..+..+|..+..+...++.+++..+..+.
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444444444444443
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.76 E-value=9.7 Score=31.05 Aligned_cols=67 Identities=27% Similarity=0.310 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 78 QKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
..|+.+...|..++..++.+.. .........+.+|..+|..++..+..+..++.++..++.+++-++
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e-~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYE-EELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555432 123344556788999999999999999999999999998876543
No 30
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.42 E-value=6 Score=29.56 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=37.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 72 QYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 72 ~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
++=++|-.||.+-...+..... .........++|..|..+|..++.+..+|..+++++..+-+++
T Consensus 21 sle~~v~~LEreLe~~q~~~e~--------~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKEC--------LILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335666666554444333222 1222344456777777777777777777777777776665544
No 31
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=83.81 E-value=17 Score=27.68 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=53.5
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc-ccCchHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE-FKKVKAASEK------EIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~-~~~~~~~ye~------ei~~lR~~v~~l~~ek~~l~l 132 (147)
+.+|..+...++.+|+.|=.||..-+....++.+........ ...++..|+. .+.-+|.+...+-..+..|+.
T Consensus 33 ~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LEr 112 (159)
T PF05384_consen 33 RKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELER 112 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999888887776665544322 2355666665 233444444455555555555
Q ss_pred HHHHHHHHH
Q psy20 133 EKRRLLDEL 141 (147)
Q Consensus 133 e~~~l~~~~ 141 (147)
.+.++..-+
T Consensus 113 rl~~l~~ti 121 (159)
T PF05384_consen 113 RLRNLEETI 121 (159)
T ss_pred HHHHHHHHH
Confidence 555554443
No 32
>PRK10698 phage shock protein PspA; Provisional
Probab=83.79 E-value=20 Score=28.47 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCC----cccCc-------hHHHHHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTT----EFKKV-------KAASEKEIEDIRKALDRESSS 126 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~----~~~~~-------~~~ye~ei~~lR~~v~~l~~e 126 (147)
+=.+++..+-.-+|..|-..+.+|.+-..++..+..|..+-.- ....+ +..|...+..|+.+++.....
T Consensus 35 em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~ 114 (222)
T PRK10698 35 EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDET 114 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677778888888889999888888888887665310 11122 233778888899888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q psy20 127 KSALAIEKRRLLDELLDLKNK 147 (147)
Q Consensus 127 k~~l~le~~~l~~~~ed~r~K 147 (147)
-..|..++..++..+.+++.|
T Consensus 115 ~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 115 LARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887753
No 33
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.62 E-value=4 Score=29.08 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
..+|..|+.+|..+..+|+.|.+|.++++.-+.++
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999988775
No 34
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.56 E-value=11 Score=29.58 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy20 81 QNDKASLEYSLYS 93 (147)
Q Consensus 81 E~~N~~Le~ki~~ 93 (147)
|..|..|..+|..
T Consensus 35 ee~na~L~~e~~~ 47 (193)
T PF14662_consen 35 EEGNAQLAEEITD 47 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 35
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.44 E-value=20 Score=28.22 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=33.1
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
-|+..|.+|-.-+..+|.|-+.|++|..+-++|++-.
T Consensus 42 lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999888887765
No 36
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=83.29 E-value=4.2 Score=29.19 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
..++.+|+.+|..+..+|+.|.+|-++++..++++
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888899999999999999999988876
No 37
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=83.24 E-value=15 Score=27.17 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=48.0
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 69 RLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEK-EIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 69 RLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~-ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
|.-.-++....||.+...|..++..++.........++. |+. ....|...|..+..++..|+-++..+..-+|.
T Consensus 9 RYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~-ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQ 83 (129)
T PF15372_consen 9 RYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRR-YEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQ 83 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566677788888888888777654321222222 221 34678888888889999998888777665553
No 38
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.23 E-value=16 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 66 LNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 66 LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
..+|.-.+=.+|+.||+.|..++.+|..|..+
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K 43 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKK 43 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444456666666666666666655544
No 39
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.23 E-value=21 Score=28.18 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=25.0
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC
Q psy20 64 KNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHT 99 (147)
Q Consensus 64 q~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~ 99 (147)
..|+..=.......|.||.+|..|..+|..|....+
T Consensus 77 ~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~ 112 (193)
T PF14662_consen 77 KSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG 112 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455566778888888888888888777654
No 40
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.88 E-value=16 Score=28.40 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc----ccCc-------hHHHHHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE----FKKV-------KAASEKEIEDIRKALDRESSS 126 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~----~~~~-------~~~ye~ei~~lR~~v~~l~~e 126 (147)
.=.+.+..+..-++..+-..+.|+.+...++.++..|..+-... ...+ ...|+..+..+..+++.....
T Consensus 34 d~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~ 113 (221)
T PF04012_consen 34 DMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQ 113 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777888889888888899998888888888776653200 1111 245666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q psy20 127 KSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 127 k~~l~le~~~l~~~~ed~r~ 146 (147)
-..|...+..+...+.+++.
T Consensus 114 ~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 114 VEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 41
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.77 E-value=11 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHH
Q psy20 59 EKNELKNLNDRLAQYIELVQKLQNDKASLE 88 (147)
Q Consensus 59 EKe~mq~LNdRLA~YIekVR~LE~~N~~Le 88 (147)
++.+|++=||++. .++-..+..|+.|.
T Consensus 6 ~~~~Lr~rLd~~~---rk~~~~~~~~k~L~ 32 (69)
T PF14197_consen 6 EIATLRNRLDSLT---RKNSVHEIENKRLR 32 (69)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3344444444433 34444444444443
No 42
>PHA01750 hypothetical protein
Probab=82.60 E-value=3.9 Score=26.93 Aligned_cols=37 Identities=19% Similarity=0.423 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy20 104 KVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147 (147)
Q Consensus 104 ~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~K 147 (147)
.+..+...|+.+|+.+|.++. +.+||+...+.+++.|
T Consensus 35 AvkeIV~~ELdNL~~ei~~~k-------ikqDnl~~qv~eik~k 71 (75)
T PHA01750 35 AVKEIVNSELDNLKTEIEELK-------IKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHh
Confidence 345666677777777776554 5666777777776643
No 43
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.37 E-value=19 Score=27.23 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLY 92 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~ 92 (147)
..+..++.|...|..+=+++..++.+...+...+.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~ 119 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQ 119 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444444333
No 44
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=82.22 E-value=13 Score=25.10 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 59 EKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 59 EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
.+..|......+..+..++..|+..-..+...+.... . + ........|...+..+...|.........+..++...+
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~-~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r 79 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-G-VSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAR 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888777777766665544 2 2 24455666788888888888888888777777777766
Q ss_pred HHHH
Q psy20 139 DELL 142 (147)
Q Consensus 139 ~~~e 142 (147)
..+.
T Consensus 80 ~~l~ 83 (123)
T PF02050_consen 80 EELQ 83 (123)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 45
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.59 E-value=12 Score=31.42 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=19.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 73 YIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 73 YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
.=.|+|.||.+|..|..+...+...
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3368889999999998888777643
No 46
>PRK13694 hypothetical protein; Provisional
Probab=81.53 E-value=10 Score=25.92 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=35.3
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHH
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKA 119 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~ 119 (147)
-++|-.||+|+-.||++-+.+...|......-. ..+ ........|=.||++
T Consensus 11 ~~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK-~~G-fD~K~~r~ii~lRK~ 61 (83)
T PRK13694 11 KEQLRAFIERIERLEEEKKTISDDIKDVYAEAK-GNG-FDVKALKTIIRLRKK 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-CcHHHHHHHHHHHcC
Confidence 477899999999999999999999988766543 122 222223445455544
No 47
>KOG1029|consensus
Probab=80.61 E-value=23 Score=33.74 Aligned_cols=94 Identities=23% Similarity=0.266 Sum_probs=61.0
Q ss_pred hhhhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCccc---CchH---HHHHHHHHHHHHHHHHHH
Q psy20 52 TIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFK---KVKA---ASEKEIEDIRKALDRESS 125 (147)
Q Consensus 52 ~~~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~---~~~~---~ye~ei~~lR~~v~~l~~ 125 (147)
+...+.-+.-+|..|..|+-.|-++.-.|-.+..+|..++............ .+.. .-+.-+..++.+++++..
T Consensus 477 ~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelsk 556 (1118)
T KOG1029|consen 477 VTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSK 556 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777777777777778788888888888888765544432222 1222 223345678888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy20 126 SKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 126 ek~~l~le~~~l~~~~ed~r 145 (147)
|...-.-+++.....+++||
T Consensus 557 E~esk~~eidi~n~qlkelk 576 (1118)
T KOG1029|consen 557 ETESKLNEIDIFNNQLKELK 576 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHH
Confidence 88777666666665555554
No 48
>KOG1962|consensus
Probab=80.61 E-value=11 Score=30.24 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=8.7
Q ss_pred HhhHHHHHhhhhhhHH
Q psy20 67 NDRLAQYIELVQKLQN 82 (147)
Q Consensus 67 NdRLA~YIekVR~LE~ 82 (147)
=+|+..||.+...|+.
T Consensus 113 I~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 113 IRRLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3555566655555544
No 49
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.61 E-value=17 Score=27.81 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=53.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 70 LAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 70 LA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
|.-.|.+|..+=.+...++.++..+..+..............+...+..+|.++..+-...+.+++.++.+++.+.
T Consensus 113 L~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 113 LSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344799999999999999998877665432122222223456667788888888888888888888888887763
No 50
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.19 E-value=20 Score=25.99 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 105 VKAASEKEIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 105 ~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
-...|+.+|.++...++++...|.-|--+|+.
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788899999999999999988877766654
No 51
>KOG4001|consensus
Probab=78.83 E-value=9.5 Score=30.58 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 75 ELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
+++..||..|+.|+.+|..++.+.
T Consensus 192 ~~~k~le~~k~~Le~~ia~~k~K~ 215 (259)
T KOG4001|consen 192 TEWKVLEDKKKELELKIAQLKKKL 215 (259)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 567778888888888888776654
No 52
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.36 E-value=11 Score=22.60 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
-.-|+..-+.+..+...|..|.+.++.++..++.
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666543
No 53
>KOG4603|consensus
Probab=78.33 E-value=27 Score=27.30 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=39.5
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALD 121 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~ 121 (147)
++++-|....+.|-++|+.|-+.-...+++|..|...-. +.. ...+|..|+..+.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~ee-mQe~i~~L~kev~ 133 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEE-MQEEIQELKKEVA 133 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHH-HHHHHHHHHHHHH
Confidence 578888888899999999999999999999988865432 122 2344555555443
No 54
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.98 E-value=34 Score=27.49 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 106 KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 106 ~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
....+..|.+++..-......-.++.-++..++.+++.++
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666555555666667777777776664
No 55
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.63 E-value=18 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=19.4
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 64 KNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 64 q~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
...-.++-.+=.+|-.|+.+|+.|+.++.+++
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k 449 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELK 449 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666667777777766665554
No 56
>smart00338 BRLZ basic region leucin zipper.
Probab=77.57 E-value=11 Score=23.78 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.++.+|...|..+..++..|..+++.+..++..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888888888887777665
No 57
>PLN02678 seryl-tRNA synthetase
Probab=77.34 E-value=12 Score=32.99 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=46.3
Q ss_pred HHHHHHHhhHHH--HHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQ--YIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAAS--EKEIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 61 e~mq~LNdRLA~--YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~y--e~ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
+-.+.|..|... .||+|-.|.++-+.|..+++.++.....-...+.... .....++..++..+..+...++.+++.
T Consensus 17 ~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~ 96 (448)
T PLN02678 17 LIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQE 96 (448)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666532 4899999999999999999888776542112222100 012234444444444555555555555
Q ss_pred HHHHHHh
Q psy20 137 LLDELLD 143 (147)
Q Consensus 137 l~~~~ed 143 (147)
+..++.+
T Consensus 97 ~~~~l~~ 103 (448)
T PLN02678 97 AKAALDA 103 (448)
T ss_pred HHHHHHH
Confidence 5555444
No 58
>KOG0612|consensus
Probab=77.18 E-value=23 Score=35.02 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
.++-+.+..|+++.. .|..+|..++.|+..|..+
T Consensus 444 ~~~~~~~~~~~~~~~----~~~~~~~~~keL~e~i~~l 477 (1317)
T KOG0612|consen 444 VNEMQEKEKLDEKCQ----AVAELEEMDKELEETIEKL 477 (1317)
T ss_pred hhHHHHhhhHHHHHH----HHhhHHHHHHHHHHHHHHH
Confidence 344455555555544 3335666666666555544
No 59
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.11 E-value=20 Score=24.36 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=27.4
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
-..|-.||+||-.||++.+.+..+|......-
T Consensus 13 ~~QLrafIerIERlEeEk~~i~~dikdvy~ea 44 (85)
T COG3750 13 AGQLRAFIERIERLEEEKKTIADDIKDVYAEA 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999998876543
No 60
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=76.96 E-value=48 Score=28.56 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=31.7
Q ss_pred hhHhHHHHHHHHHhhHHHHHhh------------------hhhhHHHHHHHHHHHHHHHhhc
Q psy20 55 SRRQEKNELKNLNDRLAQYIEL------------------VQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 55 ~r~~EKe~mq~LNdRLA~YIek------------------VR~LE~~N~~Le~ki~~l~~~~ 98 (147)
.++.|-++|+.-|++|.+-+-+ |+.++++|..|+.+++.+....
T Consensus 96 e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 96 ERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3567788888888888765544 4556788888888887776554
No 61
>KOG4466|consensus
Probab=76.74 E-value=32 Score=28.67 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=36.5
Q ss_pred HHHHHH-HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 61 NELKNL-NDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 61 e~mq~L-NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
.+|+.| +.....|++.|+.|+. +.+++.++..+...-. ...+...|+.+|..+++..+.
T Consensus 49 ~~Leel~~g~~~eYl~~~~~L~~-~~kerl~~aely~e~~--~e~v~~eYe~E~~aAk~e~E~ 108 (291)
T KOG4466|consen 49 AQLEELGQGTAPEYLKRVKKLDE-SRKERLRVAELYREYC--VERVEREYECEIKAAKKEYES 108 (291)
T ss_pred HHHHHHhccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 345555 5666788899998864 4555666665544332 345566677777666666554
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.64 E-value=18 Score=28.58 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
+-++|+.++..+..++..+..+++.++
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.53 E-value=27 Score=31.71 Aligned_cols=34 Identities=35% Similarity=0.471 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
..|+++|...|..|- +.|-.|+.++..|+.++..
T Consensus 149 qkE~eeL~~~~~~Le---~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 149 QKEKEELLKENEQLE---EEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 467777777766655 3445555555555555544
No 64
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=76.48 E-value=13 Score=23.35 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
..++.+|...|..+..++..|..++..+..++..|+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888877765
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.47 E-value=36 Score=30.67 Aligned_cols=71 Identities=24% Similarity=0.264 Sum_probs=46.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 72 QYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 72 ~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
.-++.|+.++.+-..|+..+..+..... .....+......+.++..++..+..+...+.-.+..++.+-.+
T Consensus 345 ~e~~~~~~lekeL~~Le~~~~~~~~~i~-~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~e 415 (569)
T PRK04778 345 SELESVRQLEKQLESLEKQYDEITERIA-EQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELE 415 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777765554443 2233356666777788888888887777777777666655433
No 66
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=76.42 E-value=53 Score=29.37 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=55.7
Q ss_pred hhhhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 52 TIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALA 131 (147)
Q Consensus 52 ~~~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~ 131 (147)
+..--.++|..+..|..+....-..|-.|+.+-..+..++......... ...........|..+....+....+.....
T Consensus 314 L~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~-~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~ 392 (522)
T PF05701_consen 314 LRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK-AKEAMSELPKALQQLSSEAEEAKKEAEEAK 392 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444467888888888888888888888888888888888776554431 112222223445555555555554444445
Q ss_pred HHHHHHHHHHHhh
Q psy20 132 IEKRRLLDELLDL 144 (147)
Q Consensus 132 le~~~l~~~~ed~ 144 (147)
.++.+++.+++..
T Consensus 393 ~E~~~~k~E~e~~ 405 (522)
T PF05701_consen 393 EEVEKAKEEAEQT 405 (522)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 67
>KOG4643|consensus
Probab=75.83 E-value=33 Score=33.51 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=50.1
Q ss_pred hHhHHHHHHH-------HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh--cCC---cccCchHHHHHHHHHHHHHHHHH
Q psy20 56 RRQEKNELKN-------LNDRLAQYIELVQKLQNDKASLEYSLYSIEES--HTT---EFKKVKAASEKEIEDIRKALDRE 123 (147)
Q Consensus 56 r~~EKe~mq~-------LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~--~~~---~~~~~~~~ye~ei~~lR~~v~~l 123 (147)
...+|++++. +++++--.-+.+..||.+|+.|-.+|..|... .+. ..-.....|..++..+=..+..+
T Consensus 511 ~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~al 590 (1195)
T KOG4643|consen 511 KNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNAL 590 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555544 68888888888999999999999999998873 210 01222344444444444444455
Q ss_pred HHHHHHHHHHH
Q psy20 124 SSSKSALAIEK 134 (147)
Q Consensus 124 ~~ek~~l~le~ 134 (147)
.+.+..|++++
T Consensus 591 rrhke~LE~e~ 601 (1195)
T KOG4643|consen 591 RRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHH
Confidence 56666666665
No 68
>KOG0161|consensus
Probab=75.76 E-value=25 Score=36.53 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=29.7
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKAL 120 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v 120 (147)
++|+.++++.+..+...+.||..++.|...+.....+.. .-......++..+.++...+
T Consensus 971 ~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~-~l~k~~~kle~~l~~le~~l 1029 (1930)
T KOG0161|consen 971 EEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAK-SLNKAKAKLEQQLDDLEVTL 1029 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345555666666665556666666666666555444332 12233344444444444333
No 69
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=75.21 E-value=9.4 Score=26.93 Aligned_cols=16 Identities=44% Similarity=0.835 Sum_probs=7.8
Q ss_pred hHhHHHHHHHHHhhHH
Q psy20 56 RRQEKNELKNLNDRLA 71 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA 71 (147)
+..|+++|..|..+|.
T Consensus 67 r~~EkEqL~~Lk~kl~ 82 (100)
T PF04568_consen 67 RKKEKEQLKKLKEKLK 82 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555554444
No 70
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=75.12 E-value=3.5 Score=26.40 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=21.9
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEY 89 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ 89 (147)
+++...|-++.+...+++..||.+|..|..
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777888877888888888877654
No 71
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.00 E-value=59 Score=29.66 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=39.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 76 LVQKLQNDKASLEYSLYSIEESHTTE-FKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l~~~~~~~-~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.+..|-.+...++.++..+..+-... .......+...+..+...+..+..+...+..++..+..+++.+
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555665555543311 1133455566777777777777777777777776666665554
No 72
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.82 E-value=47 Score=30.17 Aligned_cols=85 Identities=21% Similarity=0.340 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
..|+.++.|+..+--.=+....=..++.+|+.+|...+. .. ...+-. -..+|.+++..+.-+..|+..+..|..-|
T Consensus 368 ~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D--~n-~vqlsE-~~rel~Elks~lrv~qkEKEql~~EkQeL 443 (546)
T PF07888_consen 368 ADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKD--CN-RVQLSE-NRRELQELKSSLRVAQKEKEQLQEEKQEL 443 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hh-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666555533222222223355567777643221 11 112222 24577888888888888888888888888
Q ss_pred HHHHHhhhc
Q psy20 138 LDELLDLKN 146 (147)
Q Consensus 138 ~~~~ed~r~ 146 (147)
...+..|..
T Consensus 444 ~~yi~~Le~ 452 (546)
T PF07888_consen 444 LEYIERLEQ 452 (546)
T ss_pred HHHHHHHHH
Confidence 887777653
No 73
>KOG0978|consensus
Probab=74.46 E-value=44 Score=31.28 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=15.1
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 63 LKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
++.||+..+..-..|..++..-..|+.+...+.
T Consensus 505 k~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt 537 (698)
T KOG0978|consen 505 KSKLEEQILTLKASVDKLELKIGKLEEQERGLT 537 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444445555555555544443
No 74
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=74.22 E-value=29 Score=24.81 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 82 NDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 82 ~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
.++..|+.-...|.........++..+ .+.|.+++..|+.
T Consensus 37 kqkd~L~~~l~~L~~q~~s~~qr~~eL-qaki~ea~~~le~ 76 (107)
T PF09304_consen 37 KQKDQLRNALQSLQAQNASRNQRIAEL-QAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334444444444444332112222232 5566666666665
No 75
>PLN02320 seryl-tRNA synthetase
Probab=73.93 E-value=14 Score=33.19 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=54.9
Q ss_pred CCCChhhhhhHhHHHHHHHHHhhHHHH-HhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHH-HHHHHHHHHHHHHHHH
Q psy20 47 SPLSPTIISRRQEKNELKNLNDRLAQY-IELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAA-SEKEIEDIRKALDRES 124 (147)
Q Consensus 47 ~~~~~~~~~r~~EKe~mq~LNdRLA~Y-IekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~-ye~ei~~lR~~v~~l~ 124 (147)
-|+=++...+.+-..--++|..|.... ||.|-.|.++-+.|..+++.++.....-...+... -..+...+..++..+.
T Consensus 64 ~~mlD~k~ir~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk 143 (502)
T PLN02320 64 KAAIDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLK 143 (502)
T ss_pred ccccCHHHHHhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Confidence 344566667777666677787775321 89999999998999888888877653211111110 0012234444444444
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy20 125 SSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 125 ~ek~~l~le~~~l~~~~ed 143 (147)
.+...++.++..+..++.+
T Consensus 144 ~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 144 EGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555544444443
No 76
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.89 E-value=21 Score=31.10 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=47.9
Q ss_pred hHhHHHHHHHHHhhHH-HHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy20 56 RRQEKNELKNLNDRLA-QYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEK--EIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA-~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~--ei~~lR~~v~~l~~ek~~l~l 132 (147)
|.+-...-++|..|.. ..||+|-.|..+-+.|..+++.++.....-...+...... ....+..++..+..+...++.
T Consensus 8 r~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 87 (425)
T PRK05431 8 RENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEA 87 (425)
T ss_pred HhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555655532 2388888898888888888888877654211222211100 123444444555555555555
Q ss_pred HHHHHHHHHHh
Q psy20 133 EKRRLLDELLD 143 (147)
Q Consensus 133 e~~~l~~~~ed 143 (147)
++..+..++.+
T Consensus 88 ~~~~~~~~~~~ 98 (425)
T PRK05431 88 ELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 77
>KOG4797|consensus
Probab=73.89 E-value=6.7 Score=28.28 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLE 88 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le 88 (147)
+|+...|-...-..++|++.||++|..|.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555544
No 78
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.60 E-value=33 Score=27.98 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 109 SEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 109 ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
.+.+++.++..+..+..++++|.-.++.+..++.+|+.
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 35666777777888888888888888887777777764
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.51 E-value=41 Score=26.69 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
+..|..|...|.........+.-+++....
T Consensus 203 e~~id~le~eL~~~k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 203 EKEIDRLEDELEKEKEKYKKVQEELDQTLN 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 80
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=73.37 E-value=8.5 Score=30.47 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSAL 130 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l 130 (147)
+..+..|+.+|..+..+...+
T Consensus 195 e~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 195 EVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666554443
No 81
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=73.18 E-value=47 Score=28.97 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=11.1
Q ss_pred HhHHHHHHHHHhhHHHHHhhhh
Q psy20 57 RQEKNELKNLNDRLAQYIELVQ 78 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR 78 (147)
.+|-.+++.-..+|..=|++.+
T Consensus 218 ~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444
No 82
>PRK11637 AmiB activator; Provisional
Probab=72.81 E-value=36 Score=29.31 Aligned_cols=35 Identities=9% Similarity=0.183 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
...|+++..+|..+..+...++.+|..++..++..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555665555555544
No 83
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=72.31 E-value=51 Score=26.77 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 106 KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 106 ~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
-.+...+=+.+|..+.++..|..+...++..++.+++.++
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566777777777777777777777777666654
No 84
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.02 E-value=29 Score=23.89 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 107 ~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
..|+..+..|..++..+..++..|..+++....+-..+
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888999999999999999999999999988876654
No 85
>PRK02224 chromosome segregation protein; Provisional
Probab=71.98 E-value=64 Score=30.21 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=42.0
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
+..+...-.++..++.+...|+.++..+...... .......|+..+.+++..++.+..+...+...+..+...++.++
T Consensus 369 ~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~-~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 369 ESELEEAREAVEDRREEIEELEEEIEELRERFGD-APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555554443321 11223445667777777777777776666666666665555543
No 86
>KOG0995|consensus
Probab=71.73 E-value=64 Score=29.49 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 75 ELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
...-.|+..|+.|+.+|.+.....
T Consensus 235 ~~ie~l~~~n~~l~e~i~e~ek~~ 258 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMINEREKDP 258 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 355567888888888888655443
No 87
>KOG0249|consensus
Probab=71.30 E-value=17 Score=34.15 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 107 ~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.....+++.++++++++..++.++..++..++.+++.|+
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344667788999999999999999999999999988875
No 88
>KOG0972|consensus
Probab=70.62 E-value=38 Score=28.70 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=34.9
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 64 KNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 64 q~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
+.||+.|++.|.+.|.+-.+-..+..+.+.+..... .....-.....+|+.+++++++
T Consensus 269 K~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~-~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 269 KSLNNQLASLMQKFRRATDTLSELREKYKQASVGVS-SRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999887766666665554433221 1112222334556666665554
No 89
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=70.17 E-value=10 Score=27.25 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
.++|.++++.+..+..+|..|.+|.++++.-+.+
T Consensus 21 ~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 21 LAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3577888999999999999999999999877654
No 90
>PLN02939 transferase, transferring glycosyl groups
Probab=69.83 E-value=43 Score=32.52 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=60.4
Q ss_pred CChhhhhh-HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHH----HH
Q psy20 49 LSPTIISR-RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALD----RE 123 (147)
Q Consensus 49 ~~~~~~~r-~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~----~l 123 (147)
+++.+... ...-+.||.|=|+.+.-.++.-..-++|+.|..++..+...-. ...+...-...++-++++|. .+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (977)
T PLN02939 290 LSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLK--EANVSKFSSYKVELLQQKLKLLEERL 367 (977)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH--HhhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34443333 4556779999999999999998889999999999999877654 22222221122233333332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy20 124 SSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 124 ~~ek~~l~le~~~l~~~~ed~r 145 (147)
..-.+.+..++.-++..+++|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~ 389 (977)
T PLN02939 368 QASDHEIHSYIQLYQESIKEFQ 389 (977)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777765
No 91
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=69.81 E-value=11 Score=30.98 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=30.9
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHH
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKAL 120 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v 120 (147)
=+.+..|+..+..|+++|+.|..++..+..... .....++.|.+.||+.+
T Consensus 58 ~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~----~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 58 FDGISENLKDVNNLEYENYKLRQELLKKNQQLE----ILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 344566777778999999999999877633321 11122445555555544
No 92
>smart00338 BRLZ basic region leucin zipper.
Probab=69.60 E-value=25 Score=22.09 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=16.2
Q ss_pred hhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 55 ~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
.|...+..++.|-+++ ..|+.+|..|..++..
T Consensus 20 ~R~rKk~~~~~Le~~~-------~~L~~en~~L~~~~~~ 51 (65)
T smart00338 20 SRERKKAEIEELERKV-------EQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3455566666665444 4444444444444433
No 93
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.39 E-value=60 Score=30.53 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
.+|---|+.-=+|=+.|+.++-.||.+-+.+...+.- +..+.+.|-....++..+...++.+...
T Consensus 16 ~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~---------------~~~e~~rl~~~~~~~~~~~~~~e~~~~~ 80 (717)
T PF09730_consen 16 EREESLLQESASKEAYLQQRILELENELKQLRQELSN---------------VQAENERLSQLNQELRKECEDLELERKR 80 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777888888998888887666655544432 2344455555555666666666777777
Q ss_pred HHHHHHhhhc
Q psy20 137 LLDELLDLKN 146 (147)
Q Consensus 137 l~~~~ed~r~ 146 (147)
++.++.++|.
T Consensus 81 lr~e~ke~K~ 90 (717)
T PF09730_consen 81 LREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 94
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=69.38 E-value=32 Score=23.18 Aligned_cols=84 Identities=24% Similarity=0.345 Sum_probs=50.7
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc-------ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE-------FKKVKAASEKEIEDIRKALDRESSSKSALAIE 133 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~-------~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le 133 (147)
..++.||.++.........|+.+-..++.-+.++..-.... ..-+.......+..+...++.+..+-..+..+
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~ 84 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQ 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999888888877777776654310 00111122344445555555555555555555
Q ss_pred HHHHHHHHHhh
Q psy20 134 KRRLLDELLDL 144 (147)
Q Consensus 134 ~~~l~~~~ed~ 144 (147)
+..+...+.++
T Consensus 85 ~~~l~~~l~~~ 95 (106)
T PF01920_consen 85 LKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 95
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=69.31 E-value=36 Score=23.83 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=42.0
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcc--c---------CchHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEF--K---------KVKAASEKEIEDIRKALDRESSSKSA 129 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~--~---------~~~~~ye~ei~~lR~~v~~l~~ek~~ 129 (147)
.+||.--+=.+-.--++-.||.+|+.|..++..++...++.. . .-......++...+.+|..+..--.+
T Consensus 8 ~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~e 87 (96)
T PF11365_consen 8 RQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVME 87 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444444445777899999999999998886553211 0 01123355666777777666655433
Q ss_pred H
Q psy20 130 L 130 (147)
Q Consensus 130 l 130 (147)
+
T Consensus 88 L 88 (96)
T PF11365_consen 88 L 88 (96)
T ss_pred H
Confidence 3
No 96
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.26 E-value=46 Score=31.24 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=38.4
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCc---hHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKV---KAASEKEIEDIRKALDRESSSKS 128 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~---~~~ye~ei~~lR~~v~~l~~ek~ 128 (147)
|++|..+-.|=+-.|.-.-.||.+|..|..++..|+.... +...+ -...+.++.-|+.+++++.+=+.
T Consensus 82 r~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv-efE~~Khei~rl~Ee~~~l~~qlee~~rLk~ 152 (717)
T PF09730_consen 82 REEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV-EFEGLKHEIKRLEEEIELLNSQLEEAARLKE 152 (717)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555556677777777777777766653 11111 12234556666666666655443
No 97
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.20 E-value=29 Score=30.93 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=15.8
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
||-++..|-+|+.++.+-..|..+-+.|+.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~ 87 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKA 87 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555444443
No 98
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.90 E-value=72 Score=31.70 Aligned_cols=78 Identities=8% Similarity=0.000 Sum_probs=46.9
Q ss_pred HHHHhhHHHHHhhhhhh--HHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 64 KNLNDRLAQYIELVQKL--QNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 64 q~LNdRLA~YIekVR~L--E~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
..++..--.+-+....+ +.+...++.+|..|....+ ......|..+...++.++..+...++.+..++..+..++
T Consensus 1008 ~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~---~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi 1084 (1311)
T TIGR00606 1008 DTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG---QMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEI 1084 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333 5555566666766665543 224577888888888888888877776666665555555
Q ss_pred Hhh
Q psy20 142 LDL 144 (147)
Q Consensus 142 ed~ 144 (147)
..+
T Consensus 1085 ~~l 1087 (1311)
T TIGR00606 1085 KHF 1087 (1311)
T ss_pred HHH
Confidence 444
No 99
>KOG0964|consensus
Probab=68.24 E-value=38 Score=33.08 Aligned_cols=67 Identities=21% Similarity=0.382 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhHHHHH-hhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYI-ELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YI-ekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~l 132 (147)
+.++.++.| ..|| +|.|.||++-..|+.- +.|-..+ .+--+.+|..++.+.+.+++.+..++...--
T Consensus 184 qK~ekI~el----l~yieerLreLEeEKeeL~~Y-qkldk~r---r~lEYtiYdrEl~E~~~~l~~le~~r~~~~e 251 (1200)
T KOG0964|consen 184 QKREKINEL----LKYIEERLRELEEEKEELEKY-QKLDKER---RSLEYTIYDRELNEINGELERLEEDRSSAPE 251 (1200)
T ss_pred hhHHHHHHH----HHHHHHHHHHHHHhHHHHHHH-HHHHHhH---hhhhhhhhhhHHHHHHHHHHHHHHHHhccch
Confidence 444555444 5666 6889999988887643 2222111 2233678888998888888888776554433
No 100
>KOG1853|consensus
Probab=67.98 E-value=35 Score=28.36 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=21.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 76 LVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSAL 130 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l 130 (147)
+-|.|+..|..|..+...++++.. .-+..+...+..|+..+..+..-+..+
T Consensus 60 rnrdl~t~nqrl~~E~e~~Kek~e----~q~~q~y~q~s~Leddlsqt~aikeql 110 (333)
T KOG1853|consen 60 RNRDLETRNQRLTTEQERNKEKQE----DQRVQFYQQESQLEDDLSQTHAIKEQL 110 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544444444321 123334444445544444433333333
No 101
>PRK09039 hypothetical protein; Validated
Probab=67.55 E-value=68 Score=27.13 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=4.6
Q ss_pred HHHHHHHhhHH
Q psy20 61 NELKNLNDRLA 71 (147)
Q Consensus 61 e~mq~LNdRLA 71 (147)
++|..|+.+++
T Consensus 53 ~eL~~L~~qIa 63 (343)
T PRK09039 53 SALDRLNSQIA 63 (343)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 102
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=67.07 E-value=57 Score=29.45 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 106 KAASEKEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 106 ~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
+.-|+.+|..|-..|-.+...-+.-.-+|++++
T Consensus 482 r~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 482 RRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666555555555555555544
No 103
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=66.96 E-value=29 Score=25.75 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 80 LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
||-++..|-.+|++++..+......+.. ..+-+..|.+.+|.+..++.+|+-=++.-+.
T Consensus 4 LeP~iE~LInrInelQQaKKk~~EELgE-a~~l~eaL~~ELDsL~~EkvhLeeilnkKqe 62 (134)
T PF15233_consen 4 LEPQIEDLINRINELQQAKKKSSEELGE-AQALWEALQRELDSLNGEKVHLEEILNKKQE 62 (134)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555566555533211112222 2345567888888888888777554443333
No 104
>KOG0996|consensus
Probab=66.60 E-value=1.5e+02 Score=29.75 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
+..|++++.+++++....++ ..++..++..++.+
T Consensus 864 ~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i 897 (1293)
T KOG0996|consen 864 EEQIEELKKEVEELQEKAAK-KARIKELQNKIDEI 897 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHh
Confidence 34456666666666533333 35555555555443
No 105
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=66.44 E-value=29 Score=31.05 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 108 ASEKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 108 ~ye~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
.|-.-|+.|+..|+++.-|+-++.+|.+.+
T Consensus 359 vfvDiinkLk~niEeLIedKY~viLEKnd~ 388 (527)
T PF15066_consen 359 VFVDIINKLKENIEELIEDKYRVILEKNDI 388 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHhhhhhhhH
Confidence 445677889999999998888888776433
No 106
>KOG1029|consensus
Probab=66.34 E-value=25 Score=33.54 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 79 KLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 79 ~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
.|+++-..|..++..|.++...-..++. ....+|+.++.+.+....+...|+.+|..
T Consensus 441 ql~~eletLn~k~qqls~kl~Dvr~~~t-t~kt~ie~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQDVRVDIT-TQKTEIEEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccc-hHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444331111111 11334444444444444444444444433
No 107
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.21 E-value=58 Score=25.01 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
..++..+..+..+...++-.+..++.+
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 108
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.96 E-value=62 Score=25.28 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRK 118 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~ 118 (147)
.+|..|+.+..++...=..++.|+.++..|+.++..+... ...+...|+..|.+..+
T Consensus 83 kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E----rdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQE----RDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4555566666666666566666666666666665554432 22344445555544443
No 109
>KOG0161|consensus
Probab=65.84 E-value=41 Score=35.00 Aligned_cols=90 Identities=29% Similarity=0.360 Sum_probs=60.8
Q ss_pred HhHHHHHHHHHhhHHHHHh-----------hhhhhHHHHHHHHHHHHHHHhhc---------------------------
Q psy20 57 RQEKNELKNLNDRLAQYIE-----------LVQKLQNDKASLEYSLYSIEESH--------------------------- 98 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIe-----------kVR~LE~~N~~Le~ki~~l~~~~--------------------------- 98 (147)
..||..++..++-++.=++ +.+.+|.++..|..++..+....
T Consensus 1209 ekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~ 1288 (1930)
T KOG0161|consen 1209 EKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAK 1288 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHH
Confidence 4566666666666655544 44666777777666666654421
Q ss_pred CCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 99 TTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 99 ~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
...-..+...+..+|.+++.+++..++.+..+...+-+++.+++.++.
T Consensus 1289 ~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e 1336 (1930)
T KOG0161|consen 1289 LSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLRE 1336 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001234456677788899999999999998888888888888887764
No 110
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=65.75 E-value=40 Score=29.27 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=48.7
Q ss_pred hhHhHHHHHHHHHhhHH--H-HHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHH---HHHHHHHHHHHHHHHHHHH
Q psy20 55 SRRQEKNELKNLNDRLA--Q-YIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAAS---EKEIEDIRKALDRESSSKS 128 (147)
Q Consensus 55 ~r~~EKe~mq~LNdRLA--~-YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~y---e~ei~~lR~~v~~l~~ek~ 128 (147)
.|.+-..--+.|..|.. . .||+|-.|.++-+.|..+++.++.....-...+...- +.+.+.+..++..+..+..
T Consensus 7 ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~ 86 (418)
T TIGR00414 7 LRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELT 86 (418)
T ss_pred HHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Confidence 34443444555666643 2 4788888888888888888887766532111221100 0003445555555555555
Q ss_pred HHHHHHHHHHHHHHh
Q psy20 129 ALAIEKRRLLDELLD 143 (147)
Q Consensus 129 ~l~le~~~l~~~~ed 143 (147)
.++.++..+..++.+
T Consensus 87 ~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 87 ELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555544
No 111
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=65.54 E-value=1.3e+02 Score=28.72 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=9.6
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDK 84 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N 84 (147)
.+..|+..+..+-..+..++.+-
T Consensus 682 ~l~~l~~~l~~l~~~~~~~~~~l 704 (1164)
T TIGR02169 682 RLEGLKRELSSLQSELRRIENRL 704 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333333
No 112
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=65.29 E-value=35 Score=31.04 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=22.9
Q ss_pred HHHHhhHHHHH----hhhhhhHHHHHHHHHHHHHHHh
Q psy20 64 KNLNDRLAQYI----ELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 64 q~LNdRLA~YI----ekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.+-|-+|..|| +-+..|+..|..|+.++.++..
T Consensus 362 nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~ 398 (557)
T PF01763_consen 362 NSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELES 398 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666 4577788888888888776543
No 113
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.75 E-value=38 Score=22.32 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 109 SEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 109 ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
+...|..||..+.++..+...+...++.+..+++.++
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666665554
No 114
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.59 E-value=39 Score=22.50 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=46.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 76 LVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
||..-=.....|..+|.+++++.. ....+..+++...+.+..++..+.-+..+++.-+..+..
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn--------~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNN--------SLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445667888888887653 234567788889999999999999999988887766543
No 115
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.16 E-value=75 Score=25.56 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy20 118 KALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 118 ~~v~~l~~ek~~l~le~~~l~ 138 (147)
..|..+..++.+++-.+..+.
T Consensus 67 ~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 67 NIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 116
>PRK03918 chromosome segregation protein; Provisional
Probab=63.80 E-value=1.3e+02 Score=28.17 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
...+..+...+..+..+...+.-++..+..+++.
T Consensus 665 ~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~ 698 (880)
T PRK03918 665 REEYLELSRELAGLRAELEELEKRREEIKKTLEK 698 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
No 117
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=63.71 E-value=79 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
.++..|+.+|+.+..||.+|.-.+-
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777766655543
No 118
>KOG4360|consensus
Probab=63.64 E-value=60 Score=29.48 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=46.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCc---hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 71 AQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKV---KAASEKEIEDI-------RKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 71 A~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~---~~~ye~ei~~l-------R~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
-..-+|...+|.+|..|..|...++.........- +....++++++ ...|...+.+..+.+-++.++..+
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq 241 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ 241 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446778899999999888877766543222222 22334444433 334455567777777777777777
Q ss_pred HHhhhcC
Q psy20 141 LLDLKNK 147 (147)
Q Consensus 141 ~ed~r~K 147 (147)
+-|++.|
T Consensus 242 l~d~qkk 248 (596)
T KOG4360|consen 242 LVDLQKK 248 (596)
T ss_pred HHhhHHH
Confidence 7766543
No 119
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=63.37 E-value=27 Score=24.56 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 107 ~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
.....++.++++++..+..++..|..++..++.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334567777777777777777777777777755
No 120
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=62.78 E-value=33 Score=23.42 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
.++|..+|..|-..-.-+=.||+.|-.|..++..|.+.
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLes 62 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLES 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34566666555433333445899999999999888764
No 121
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=62.65 E-value=70 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 116 IRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 116 lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
||.+++.....|..|.-++.++..+++.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777666555544
No 122
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=62.61 E-value=79 Score=29.94 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 115 DIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 115 ~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
.++..+..+..+...+..+++++..
T Consensus 912 ~l~~~l~~l~~~~~~~~~~~~~l~~ 936 (1179)
T TIGR02168 912 ELRRELEELREKLAQLELRLEGLEV 936 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344344444444444443333
No 123
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.57 E-value=61 Score=23.99 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=30.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
...+..||+++...=..|..|...|..|+.++..+....
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888877765543
No 124
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=62.55 E-value=75 Score=26.56 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHhhHHHHHhh----hhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIEL----VQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIek----VR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~l 132 (147)
..|++.++.=+++...-.+| +|-|-.+|+.|..+..............+...|...|.+....++.....+..+.-
T Consensus 56 ~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~ 135 (309)
T PF09728_consen 56 QKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLRE 135 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 35667777666666665544 36667778877766654433322124456788999999999999988888888777
Q ss_pred HHHHHHHHHHhh
Q psy20 133 EKRRLLDELLDL 144 (147)
Q Consensus 133 e~~~l~~~~ed~ 144 (147)
+-..+..-+..|
T Consensus 136 eN~~L~eKlK~l 147 (309)
T PF09728_consen 136 ENEELREKLKSL 147 (309)
T ss_pred HHHHHHHHHHHH
Confidence 776666665544
No 125
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.51 E-value=63 Score=27.03 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=16.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 71 AQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 71 A~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
..+.+.+..||++...|..++..+...
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e 72 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKE 72 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666665443
No 126
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.19 E-value=76 Score=25.30 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
+.++.+|..+++.+..-+..|.--+..+-..++.|
T Consensus 83 ~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 83 EQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555543
No 127
>KOG0804|consensus
Probab=62.06 E-value=1.2e+02 Score=27.15 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 59 EKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 59 EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
|+.++++.+.-|..-|..|+.|++.+..+++.-..
T Consensus 345 ~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~ 379 (493)
T KOG0804|consen 345 EQSQLENQKQYYELLITEADSLKQESSDLEAEKKI 379 (493)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 34678888888888888888888887777664443
No 128
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=61.91 E-value=54 Score=23.23 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 109 SEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 109 ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.+..|..+..++|.++..|..|.-.+..++.+++..
T Consensus 38 ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 38 KEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477899999999999999999999999999998853
No 129
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.80 E-value=37 Score=21.26 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=16.5
Q ss_pred hhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy20 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSL 91 (147)
Q Consensus 55 ~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki 91 (147)
.|...|..|..|-+++..+-.....|..++..|..++
T Consensus 20 ~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 20 SRQRKKQYIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666665544443333333333333333333
No 130
>KOG4360|consensus
Probab=61.59 E-value=84 Score=28.56 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 119 ALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 119 ~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.+.++....+.....+...+.++..+|
T Consensus 276 E~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 276 ELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333333333444444444444444
No 131
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.35 E-value=94 Score=28.77 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=15.0
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 63 LKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
|..|-..+-.|=..++.|+..+..|..+|..|..
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 132
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.26 E-value=82 Score=25.08 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy20 109 SEKEIEDIRKALDRESSSKSALA 131 (147)
Q Consensus 109 ye~ei~~lR~~v~~l~~ek~~l~ 131 (147)
++..+.+.+..+..+..+...+.
T Consensus 75 l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 75 LERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 133
>KOG4643|consensus
Probab=61.16 E-value=35 Score=33.33 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=31.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhcCC-cccCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 73 YIELVQKLQNDKASLEYSLYSIEESHTT-EFKKVKAASEKEIEDIRKALDRESSSKSA 129 (147)
Q Consensus 73 YIekVR~LE~~N~~Le~ki~~l~~~~~~-~~~~~~~~ye~ei~~lR~~v~~l~~ek~~ 129 (147)
|-++|-.|++.|+.|...-..++++-.. ..-..+..++.+|=.+.++++++..++.-
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdt 319 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDT 319 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhh
Confidence 5567777888888776666555544320 01111244556665666655555544433
No 134
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=61.15 E-value=78 Score=24.80 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=53.4
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC------Cc-----ccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHT------TE-----FKKVKAASEKEIEDIRKALDRESSSKSAL 130 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~------~~-----~~~~~~~ye~ei~~lR~~v~~l~~ek~~l 130 (147)
.|...-.-+|..+-.-+.+|.+-..++..+..|..+-. .+ .-.-...|+..+..+..+++.+...-..|
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l 118 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKL 118 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556777777777888877777777777665531 10 00113345666667777777766666677
Q ss_pred HHHHHHHHHHHHhhhc
Q psy20 131 AIEKRRLLDELLDLKN 146 (147)
Q Consensus 131 ~le~~~l~~~~ed~r~ 146 (147)
.-.+..++..+++++.
T Consensus 119 ~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 119 QEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666653
No 135
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=60.67 E-value=1.1e+02 Score=26.93 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHH
Q psy20 59 EKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 59 EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
=..++..+|.++..--++-..||.+-+.|+.+|..+..... ..........+.|.++...+..+.
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~-~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI-ETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHhhHHHHHHHHHHHH
Confidence 34567778888888888888899988889888888766543 122222223444444444444433
No 136
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=60.33 E-value=60 Score=23.22 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q psy20 77 VQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 77 VR~LE~~N~~Le~ki~~l~~ 96 (147)
+..|.++|..+...+.+|+.
T Consensus 46 l~~L~~q~~s~~qr~~eLqa 65 (107)
T PF09304_consen 46 LQSLQAQNASRNQRIAELQA 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444444443
No 137
>KOG4348|consensus
Probab=60.21 E-value=43 Score=29.95 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 107 ~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
...-.+|..||..+++-..=+.+|+.|++.++.++.
T Consensus 590 ~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 590 KDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 334578899999999988888999999999887753
No 138
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=60.19 E-value=62 Score=23.34 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=39.4
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
.+++.+......|..++..+-.........+.....+=..+.... ..--..|..+|.++..+..+...+..+.+.+...
T Consensus 10 ~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~H-a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~ 88 (132)
T PF07926_consen 10 SELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKH-AEDIKELQQLREELQELQQEINELKAEAESAKAE 88 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777666555554444443332210000000 0012344555555555555555555555554444
Q ss_pred HH
Q psy20 141 LL 142 (147)
Q Consensus 141 ~e 142 (147)
++
T Consensus 89 l~ 90 (132)
T PF07926_consen 89 LE 90 (132)
T ss_pred HH
Confidence 43
No 139
>KOG0250|consensus
Probab=59.62 E-value=1.5e+02 Score=29.25 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 119 ALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 119 ~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.+..+..+...++.++..|..+.++|
T Consensus 402 k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 402 KLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 140
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=59.33 E-value=99 Score=25.77 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=45.8
Q ss_pred HHHhhHHHH----HhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 65 NLNDRLAQY----IELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 65 ~LNdRLA~Y----IekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
.|=|+|-.| -++||.|- .|..-|- +++. -...|..+...|+.||..+...+..+..++...++.
T Consensus 40 gl~dhlftfss~ntervrklh----~~~~~~y-~~e~-------e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~ 107 (389)
T PF06216_consen 40 GLIDHLFTFSSNNTERVRKLH----IISDYIY-NKEF-------ERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREI 107 (389)
T ss_pred hhhhhheeccCCcHHHHHHHH----HHHHHHH-HHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666555 57888772 2222221 1111 124567777888999998888888888888888888
Q ss_pred HHhhh
Q psy20 141 LLDLK 145 (147)
Q Consensus 141 ~ed~r 145 (147)
++.+|
T Consensus 108 ~eglr 112 (389)
T PF06216_consen 108 IEGLR 112 (389)
T ss_pred HHhhh
Confidence 88776
No 141
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=59.20 E-value=51 Score=22.52 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 115 DIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 115 ~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
++...|..+..++.+|..++++....++
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~ 63 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARAN 63 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 3333444455555555555555444433
No 142
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=58.86 E-value=1.1e+02 Score=29.00 Aligned_cols=37 Identities=35% Similarity=0.412 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 106 KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 106 ~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
+...+.++.+|...|+.+.+++.-|.-|+--+..+++
T Consensus 129 ~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 129 KSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778889999999999999999888877777765
No 143
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=58.60 E-value=39 Score=21.66 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy20 115 DIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147 (147)
Q Consensus 115 ~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~K 147 (147)
.+...+.+....+..|..++.++..++++++.+
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 445566677777888999999999999988753
No 144
>KOG3584|consensus
Probab=58.52 E-value=13 Score=31.25 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhh
Q psy20 75 ELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
+||--||-+|+.|-.+++.|++-
T Consensus 319 NRVAVLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 319 NRVAVLENQNKALIEELKTLKEL 341 (348)
T ss_pred hHHHHHhcccHHHHHHHHHHHHH
Confidence 46677899999988777776553
No 145
>PF13879 KIAA1430: KIAA1430 homologue
Probab=58.44 E-value=52 Score=21.91 Aligned_cols=56 Identities=7% Similarity=0.034 Sum_probs=34.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHH-H--HHHHHHHHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAAS-E--KEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~y-e--~ei~~lR~~v~~l~~ek~~l~l 132 (147)
++++..|.+|..|-.+|.......+.. ..+..| . .....-+.+.+.+..||..|.-
T Consensus 36 er~~~I~reN~~LL~ki~~I~~~~~~~--~~~~~~~~~~~n~~~R~~e~~kI~~EN~~l~~ 94 (98)
T PF13879_consen 36 ERQREIERENQILLRKIMEIMRKPGSI--DCWNPYRPKSLNAINRKREQRKIDRENQKLLK 94 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC--CCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999988766522 111111 1 1122233445556666665543
No 146
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=58.17 E-value=53 Score=21.94 Aligned_cols=31 Identities=19% Similarity=0.466 Sum_probs=27.1
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 68 DRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 68 dRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
++|-.||+++-.||.+-+.+...|..+...-
T Consensus 4 ~~Lr~~ieRiErLEeEk~~i~~dikdVyaEA 34 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEKKAISDDIKDVYAEA 34 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999998866553
No 147
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=58.12 E-value=1e+02 Score=25.57 Aligned_cols=36 Identities=8% Similarity=0.202 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
..|.+++..+-.+..+.++|...+.-++..++.|..
T Consensus 228 ~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 228 ERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566666666666777777777777777777754
No 148
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=58.01 E-value=98 Score=25.65 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
|..|+++|..+..+....+.++.++..+
T Consensus 167 l~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 167 LVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 4455555555555555555555555443
No 149
>PRK07857 hypothetical protein; Provisional
Probab=57.97 E-value=39 Score=24.09 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
...|.++|.+||.+-.+-..|..+.-.+-.++-.+|
T Consensus 27 ~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K 62 (106)
T PRK07857 27 DAEIDELREEIDRLDAEILALVKRRTEVSQAIGKAR 62 (106)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777766666666666655555555554
No 150
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=57.63 E-value=43 Score=21.27 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
..++.++..++..+..++..|..+++.+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666666666555
No 151
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.56 E-value=1.1e+02 Score=25.44 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q psy20 80 LQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 80 LE~~N~~Le~ki~~l~~~~ 98 (147)
|......|+.++..++...
T Consensus 182 l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 182 LRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556666766666554
No 152
>KOG4674|consensus
Probab=57.40 E-value=68 Score=33.29 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=56.0
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKV---KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~---~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
|.+.-+|-..+..+|+++..|+..|..++.........+ ..-....+..++.+|+++..+...+.-+++++...++.
T Consensus 790 ~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 869 (1822)
T KOG4674|consen 790 NELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAK 869 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677888899999999999988877654222222 33446677888888888888888888877777766654
Q ss_pred h
Q psy20 144 L 144 (147)
Q Consensus 144 ~ 144 (147)
+
T Consensus 870 l 870 (1822)
T KOG4674|consen 870 L 870 (1822)
T ss_pred H
Confidence 4
No 153
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.28 E-value=83 Score=23.85 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 106 KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 106 ~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
...|+.+..+|..+|..+..++..|+..+.++....
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 456777888999999999999988887777765543
No 154
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=56.52 E-value=76 Score=23.17 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=24.9
Q ss_pred hhhhhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 51 PTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 51 ~~~~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.+...+..+.+....|++.+..--.-...|+..+..|+.++..+..
T Consensus 42 ~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 42 DLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666655444444455555555555544433
No 155
>KOG0804|consensus
Probab=56.39 E-value=32 Score=30.62 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=35.0
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc---ccCchHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE---FKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~---~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
.|+.||++|.-.-.....++..|+.|-.....|..+-... .......++..|.+|..||.++.
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 4666777777766666677777777666555544432100 11222344556666666665554
No 156
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=56.38 E-value=31 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
..++.++.++++.+..++..|..|+..+.
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666666677767777777766666543
No 157
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=56.31 E-value=56 Score=21.63 Aligned_cols=64 Identities=11% Similarity=0.182 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCC-cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 78 QKLQNDKASLEYSLYSIEESHTT-EFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~~~~~-~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
-.|..+|=.|..+|..+.+.-.. .+..+..++...| +|+..+..+..+.....-.+..+..+++
T Consensus 10 ~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNi-eLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 10 DKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENI-ELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667777788888777666542 2344445544333 5777777777776666666665555543
No 158
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.25 E-value=56 Score=21.53 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=34.0
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
.+..|-.+...-||.+..|..+|..|..+-..+. .+...|+.....+..++...+--++.+-..+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~---------------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELK---------------EENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666776666666666666554443 2333444444444444444444444444333
No 159
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.16 E-value=1.4e+02 Score=26.02 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
...+..+......+......+..++..++..++..
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555666666666666666666666554
No 160
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.13 E-value=1.2e+02 Score=25.42 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc-ccCchH-----HHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE-FKKVKA-----ASEKEIEDIRKALDRES 124 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~-~~~~~~-----~ye~ei~~lR~~v~~l~ 124 (147)
+....+..|-.||-.-.++++.=|.+...|..++.-.++-+-.+ ..++.+ .-.+||.+|++.|+..-
T Consensus 65 QKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 65 QKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999888888887777777777665443332211 112211 11447777777776543
No 161
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=56.05 E-value=88 Score=30.71 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
..+..++..++..+......+..++..+...+
T Consensus 883 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 883 EEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 162
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=55.83 E-value=98 Score=30.40 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=4.8
Q ss_pred HHhhHHHHHhhhh
Q psy20 66 LNDRLAQYIELVQ 78 (147)
Q Consensus 66 LNdRLA~YIekVR 78 (147)
|.+++..+.+++.
T Consensus 833 l~~~~~~~~~~~~ 845 (1163)
T COG1196 833 LEEEIEELEEKLD 845 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 163
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=55.45 E-value=38 Score=24.05 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=23.2
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
++|+.|.+.+...-..|..|..+|..|..+...|+..
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666665555444
No 164
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=55.08 E-value=4 Score=37.70 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=0.0
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRES---SSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~---~ek~~l~le~~~l~~~~ed 143 (147)
+.-+..-+.+++.||..|..|..++..|+..... ..+++.+...|+..|..+. .+-+.+++++..+..++..
T Consensus 249 ~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n-----~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~s 323 (722)
T PF05557_consen 249 NKELKEQLAHIRELEKENRRLREELKHLRQSQEN-----VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNS 323 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667899999999999999888776542 3344455555555554333 3333344444444444433
No 165
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=55.02 E-value=26 Score=23.54 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 120 LDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 120 v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
|+++..++++|..++..+..++++.+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888887777776654
No 166
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=54.89 E-value=1.3e+02 Score=25.27 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
+||.+.-.|---.-++++-+-.||..+.+|..++.. ++. .+ ...+..+...+.+|+.+..+..++..++.+.
T Consensus 57 ~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~-Ke~------qv-~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 57 EEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV-KES------QV-NFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh-hHH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333333445555667777776666532 211 12 2237788888889998888888888888887
Q ss_pred HHHHH
Q psy20 138 LDELL 142 (147)
Q Consensus 138 ~~~~e 142 (147)
+.++.
T Consensus 129 Q~~~~ 133 (307)
T PF10481_consen 129 QQAAS 133 (307)
T ss_pred HHhhc
Confidence 76653
No 167
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=54.82 E-value=24 Score=25.62 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.6
Q ss_pred HHHHHHhhHHHHHhhhhhhHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQN 82 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~ 82 (147)
-|-.+++||+..+|++|.|+.
T Consensus 15 ll~~~tnRl~ri~dR~R~L~~ 35 (130)
T PF11026_consen 15 LLLVLTNRLARIVDRIRQLHD 35 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999974
No 168
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=54.72 E-value=58 Score=21.25 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q psy20 79 KLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 79 ~LE~~N~~Le~ki~~l~~~ 97 (147)
.||+++..|...+..+..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk 20 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRK 20 (69)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3666666666666555443
No 169
>KOG1853|consensus
Probab=54.62 E-value=1.3e+02 Score=25.15 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 78 QKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
-.||++|+.|++..+-+... ...++..++..-.+.=+++..+..|........+.++..+-
T Consensus 55 ~q~etrnrdl~t~nqrl~~E----~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiR 115 (333)
T KOG1853|consen 55 DQLETRNRDLETRNQRLTTE----QERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777666555432 34455666666666667777777777776666665555443
No 170
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=54.49 E-value=40 Score=22.00 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=25.9
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
+..+..++..++..-.+...++.+|..|..++..+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 23 QHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667777777777777778888888887776653
No 171
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=54.23 E-value=96 Score=26.76 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC----------CcccCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHT----------TEFKKVKAASEKEIEDIRKALDRESSSKSA 129 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~----------~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~ 129 (147)
+|+=++|--.|-.|....+..|.++..|..++.+-..-.. .+...+-..-..+|..|+..|+++..|-..
T Consensus 140 ~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 140 REENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566778888888888888888666555322211 012222333456778888888887776443
Q ss_pred -HHHHH
Q psy20 130 -LAIEK 134 (147)
Q Consensus 130 -l~le~ 134 (147)
|+++.
T Consensus 220 LLQle~ 225 (401)
T PF06785_consen 220 LLQLES 225 (401)
T ss_pred HHHhhh
Confidence 34444
No 172
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=54.17 E-value=41 Score=22.04 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
+|..+=.+|-.+..++..+..++..++
T Consensus 8 ~ID~ID~~ii~LL~~R~~~~~~i~~~K 34 (74)
T TIGR01808 8 EIDRLDAEILALVKRRAEISQAIGKAR 34 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 173
>KOG1962|consensus
Probab=53.76 E-value=1.1e+02 Score=24.42 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=37.1
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 66 LNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 66 LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
-|..+..-.+.--.||.+|..+.+++..++..-......+. .-+.....++.|.+.+..|=.+|.-+..+++.+++
T Consensus 135 ~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le-~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 135 ENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLE-KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444444444334666666665555555443321111111 12334445566666666665555555555555554
No 174
>PRK06285 chorismate mutase; Provisional
Probab=53.67 E-value=58 Score=22.25 Aligned_cols=36 Identities=33% Similarity=0.496 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
...|.++|.+|+.+-.+-..|..+.-.+..++-.+|
T Consensus 6 ~~~L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K 41 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDLIAERTSLAKEIAELK 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777666666666666655555554
No 175
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=53.61 E-value=1.1e+02 Score=23.97 Aligned_cols=62 Identities=21% Similarity=0.328 Sum_probs=35.8
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRE 123 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l 123 (147)
.++..|+.++.......++|.+-+...+..|..+..... .-+.+-..+..+|..|+..+...
T Consensus 19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~-~Lpqll~~h~eEvr~Lr~~LR~~ 80 (194)
T PF15619_consen 19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEA-ELPQLLQRHNEEVRVLRERLRKS 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666667776666666666655544433 23444445566666666655443
No 176
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=53.59 E-value=26 Score=22.22 Aligned_cols=27 Identities=30% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy20 65 NLNDRLAQYIELVQKLQNDKASLEYSLY 92 (147)
Q Consensus 65 ~LNdRLA~YIekVR~LE~~N~~Le~ki~ 92 (147)
.|-+|.+ .+..+..|+++|..|..-+.
T Consensus 31 vL~~R~~-l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 31 VLLDRAA-LIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4566654 55666888888888776554
No 177
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=53.30 E-value=87 Score=24.67 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCcccCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 76 LVQKLQNDKASLEYSLYSIEESHTTEFKKV----KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l~~~~~~~~~~~----~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
....||...+.|+.++..++.... ....- -.....+|..|...-.++...+..|++.+..+..++.+++
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie-~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIE-EVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554443321 01110 1122334555555555566666666666666666666655
No 178
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=52.84 E-value=4.5 Score=37.30 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
+..++..+..+..++.++..+++.++..+++
T Consensus 393 ~~~L~ek~~~l~~eke~l~~e~~~L~e~~ee 423 (713)
T PF05622_consen 393 NKQLEEKLEALEEEKERLQEERDSLRETNEE 423 (713)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544433
No 179
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=52.37 E-value=99 Score=24.05 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 66 LNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEK 134 (147)
Q Consensus 66 LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~ 134 (147)
+|--|++++.++--|+.....|..+|+. ........+|++|...++++.+++.-.+.++
T Consensus 103 ~~leL~s~~~ei~~L~~kI~~L~~~in~----------~~k~~~n~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 103 KNLELKSIKKEIEILRLKISSLQKEINK----------NKKKDLNEEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444333333321 1222233457778888888877776665554
No 180
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=52.03 E-value=1.2e+02 Score=24.23 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCC----cccCc-------hHHHHHHHHHHHHHHHHHHHHH
Q psy20 59 EKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTT----EFKKV-------KAASEKEIEDIRKALDRESSSK 127 (147)
Q Consensus 59 EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~----~~~~~-------~~~ye~ei~~lR~~v~~l~~ek 127 (147)
=+.+|+.+-.-+|.-|...+.||.+-..+......|..+-.- ....+ ...|+..+..+...+.....-.
T Consensus 36 ~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~ 115 (225)
T COG1842 36 MESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQV 115 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888888777777766666554210 00111 2344555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy20 128 SALAIEKRRLLDELLDLK 145 (147)
Q Consensus 128 ~~l~le~~~l~~~~ed~r 145 (147)
.+|...+..+...+.+|+
T Consensus 116 ~~l~~~~~~Le~Ki~e~~ 133 (225)
T COG1842 116 EKLKKQLAALEQKIAELR 133 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555554
No 181
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.92 E-value=69 Score=23.90 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=14.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHh
Q psy20 74 IELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.+.+..|++++..|+.++..++.
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666655
No 182
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=51.90 E-value=52 Score=19.94 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=20.4
Q ss_pred hhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 55 ~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
.|...|..++.|-. .|..|+.+|..|..+|..|.
T Consensus 19 ~R~rkk~~~~~le~-------~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 19 SRQRKKQREEELEQ-------EVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 34555666666643 45566667777766666554
No 183
>PRK02224 chromosome segregation protein; Provisional
Probab=51.80 E-value=1.8e+02 Score=27.32 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy20 124 SSSKSALAIEKR 135 (147)
Q Consensus 124 ~~ek~~l~le~~ 135 (147)
..+...+.-++.
T Consensus 673 ~~~~~~l~~~i~ 684 (880)
T PRK02224 673 REERDDLQAEIG 684 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 184
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.57 E-value=52 Score=23.09 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 115 DIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 115 ~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
++++++..+..++..++.+...+..+++.|
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444443
No 185
>KOG0999|consensus
Probab=51.51 E-value=1.8e+02 Score=26.89 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=49.3
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc--ccCchHHHHHHHHHHHHHHHHHHHH
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE--FKKVKAASEKEIEDIRKALDRESSS 126 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~--~~~~~~~ye~ei~~lR~~v~~l~~e 126 (147)
|..=|.+|..+--|=+-.|...-.||.+|..|..+...|++..... -.+.-..++.++.=|..++++...=
T Consensus 151 R~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~L 223 (772)
T KOG0999|consen 151 RRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRL 223 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888877778888888889999999999999988876521 1122334566666666666665543
No 186
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=51.41 E-value=89 Score=27.56 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=43.8
Q ss_pred HHHHHHhh--HHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDR--LAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAAS---EKEIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 62 ~mq~LNdR--LA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~y---e~ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
--..|..| .+..+++...|+.+-+.|..+.+.++.....-...+...- +..+..+...+..+..+...+..+++.
T Consensus 14 v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~ 93 (429)
T COG0172 14 VREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDE 93 (429)
T ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 33445444 4555677777777777777777776655432111221100 112344555555555555556666665
Q ss_pred HHHHHHhh
Q psy20 137 LLDELLDL 144 (147)
Q Consensus 137 l~~~~ed~ 144 (147)
+..+++++
T Consensus 94 ~~~~l~~~ 101 (429)
T COG0172 94 LEAELDTL 101 (429)
T ss_pred HHHHHHHH
Confidence 55555543
No 187
>KOG4674|consensus
Probab=51.15 E-value=1.1e+02 Score=31.78 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=48.7
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCC-cccCchHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 66 LNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTT-EFKKVKAA----------SEKEIEDIRKALDRESSSKSALAIEK 134 (147)
Q Consensus 66 LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~-~~~~~~~~----------ye~ei~~lR~~v~~l~~ek~~l~le~ 134 (147)
|=+-.....+++..|+.+|..|..+|..+...... ..+.+... -..+..-+-..++.+.+|+.+|.-++
T Consensus 1104 Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~ 1183 (1822)
T KOG4674|consen 1104 LEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQV 1183 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33445577889999999999999999987766320 01111110 01122233334555667777777777
Q ss_pred HHHHHHHHhhh
Q psy20 135 RRLLDELLDLK 145 (147)
Q Consensus 135 ~~l~~~~ed~r 145 (147)
.-+...++|++
T Consensus 1184 ~~~~k~i~dL~ 1194 (1822)
T KOG4674|consen 1184 ASLNRTIDDLQ 1194 (1822)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 188
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.01 E-value=62 Score=20.52 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 115 DIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 115 ~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.++.++..+..+...+..+.+.+..+++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444433
No 189
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.78 E-value=70 Score=21.05 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
..++..|+..-..+..++..|..+...++.+-.
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444444444444444433
No 190
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=50.41 E-value=56 Score=22.46 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
++.++|.+|+.+-.+-..|..+.-.+..++-.+|
T Consensus 4 ~L~~lR~~ID~ID~qLv~LL~~R~~~~~~ia~~K 37 (94)
T TIGR01795 4 ELKALRQSIDNIDAAVIHMLAERFKCTSQVGVLK 37 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665555555555555554444
No 191
>PTZ00464 SNF-7-like protein; Provisional
Probab=50.23 E-value=1.3e+02 Score=23.89 Aligned_cols=70 Identities=7% Similarity=0.033 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh-----cCC--cccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy20 59 EKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES-----HTT--EFKKVKAASEKEIEDIRKALDRESSSKS 128 (147)
Q Consensus 59 EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~-----~~~--~~~~~~~~ye~ei~~lR~~v~~l~~ek~ 128 (147)
.++.+..|++|+-.|-.|+..|+.+.......+...+.. +.. ..-+-+.+|+..+..+..+++.+..-..
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~ 92 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999999999999988887766655444322110 000 0112246778877777666665544333
No 192
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=49.11 E-value=2.2e+02 Score=26.36 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=30.0
Q ss_pred HHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc-ccCchHHHHHHHHHHHHHHHHHHH
Q psy20 65 NLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE-FKKVKAASEKEIEDIRKALDRESS 125 (147)
Q Consensus 65 ~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~-~~~~~~~ye~ei~~lR~~v~~l~~ 125 (147)
.|...--..+.+|..||..-.+|..++........+. ++.....+..++..|+..++.+..
T Consensus 40 ~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~ 101 (617)
T PF15070_consen 40 TLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEE 101 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433344455666666666666666555433221111 111122345566667776666553
No 193
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=49.04 E-value=49 Score=21.77 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
+|.++=.+|-.+..++..+..++..++
T Consensus 7 ~Id~iD~~i~~Ll~~R~~l~~~i~~~K 33 (83)
T TIGR01791 7 EIEEIDKSILDLIEKRIKIARKIGEIK 33 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 194
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.80 E-value=1.2e+02 Score=25.94 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=14.2
Q ss_pred HHHHHHhhHHHHHhhhhhhHHH-HHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQND-KASLEYSLYSI 94 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~-N~~Le~ki~~l 94 (147)
.|.-|-+-+...+||+..-|.. |..|+..+.++
T Consensus 242 ~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eY 275 (359)
T PF10498_consen 242 QLDKLQQDISKTLEKIESREKYINNQLEPLIQEY 275 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333444444455555544432 33344444443
No 195
>KOG0963|consensus
Probab=48.76 E-value=2e+02 Score=26.73 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=23.4
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 63 LKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
=++.+++.+.|++.--.+-.+|..|+.+|..+.
T Consensus 177 ~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq 209 (629)
T KOG0963|consen 177 EQEWAEREAGLKDEEQNLQEQLEELEKKISSLQ 209 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776677777777777777763
No 196
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=48.49 E-value=46 Score=26.80 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q psy20 78 QKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~ 96 (147)
..|.++|+.|+.++..++.
T Consensus 72 ~~l~~en~~L~~e~~~l~~ 90 (276)
T PRK13922 72 FDLREENEELKKELLELES 90 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666655543
No 197
>KOG0999|consensus
Probab=48.26 E-value=1.7e+02 Score=27.18 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
.+|---|+.--.+=..|+-+|-.||.+-+.|...+..
T Consensus 89 e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~ 125 (772)
T KOG0999|consen 89 EREESLLQESAAKEEYYLQKILELENELKQLRQELTN 125 (772)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777888777777776666665544
No 198
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.25 E-value=1e+02 Score=22.27 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=10.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 71 AQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 71 A~YIekVR~LE~~N~~Le~ki~~l 94 (147)
+.+=+.+..|+.+-..|..+|-.+
T Consensus 33 ~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 33 ASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444555555443
No 199
>KOG4807|consensus
Probab=48.08 E-value=84 Score=27.84 Aligned_cols=71 Identities=27% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 64 KNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 64 q~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
|.||+|||.-|++.|.| |..--...+.+...-+..|+-++ -||-.-.++..=+..|..-.|.++-.+.|
T Consensus 473 QELnnRLaaEItrLRtl----------ltgdGgGtGsplaqgkdayELEV-LLRVKEsEiQYLKqEissLkDELQtalrD 541 (593)
T KOG4807|consen 473 QELNNRLAAEITRLRTL----------LTGDGGGTGSPLAQGKDAYELEV-LLRVKESEIQYLKQEISSLKDELQTALRD 541 (593)
T ss_pred HHHhhHHHHHHHHHHHH----------hccCCCCCCCccccCcchhhHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred hh
Q psy20 144 LK 145 (147)
Q Consensus 144 ~r 145 (147)
-|
T Consensus 542 Kk 543 (593)
T KOG4807|consen 542 KK 543 (593)
T ss_pred hh
No 200
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.86 E-value=74 Score=20.48 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
.|+.|-..|..-..+-.+|+.++..+..
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333333334444333333
No 201
>KOG0971|consensus
Probab=47.57 E-value=2e+02 Score=28.26 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQND 83 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~ 83 (147)
-+..+|..-|+||-.-+-|.|.|-.+
T Consensus 368 ~qfkqlEqqN~rLKdalVrLRDlsA~ 393 (1243)
T KOG0971|consen 368 YQFKQLEQQNARLKDALVRLRDLSAS 393 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34556777788888887777777443
No 202
>PRK04325 hypothetical protein; Provisional
Probab=47.54 E-value=79 Score=20.77 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSL 91 (147)
Q Consensus 80 LE~~N~~Le~ki 91 (147)
+|..-..||.++
T Consensus 7 ~e~Ri~~LE~kl 18 (74)
T PRK04325 7 MEDRITELEIQL 18 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333334444444
No 203
>KOG0250|consensus
Probab=47.46 E-value=1.3e+02 Score=29.70 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
.+|..+|+-++.+.++...++.++.+.+..+
T Consensus 337 ~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i 367 (1074)
T KOG0250|consen 337 EEIEEARKDLDDLRREVNDLKEEIREIENSI 367 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555444444333
No 204
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=46.28 E-value=70 Score=22.58 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
.+..++.++..+..+...|.+|++-|+.++.-|+.
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~ 106 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34556666777777777777888877777766654
No 205
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=46.18 E-value=2e+02 Score=26.22 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=38.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 74 IELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAAS-EKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~y-e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
-.++..||.+-..||.++.++...-.. ...+..+ ...+.++-.++..+..+...+..+...+..++++
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~ 630 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGD--SELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQ 630 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--chhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888888899988887776542 1121111 1135555555555555555555555555554444
No 206
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.09 E-value=1.9e+02 Score=24.77 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=6.3
Q ss_pred HHhhHHHHHhhhhhh
Q psy20 66 LNDRLAQYIELVQKL 80 (147)
Q Consensus 66 LNdRLA~YIekVR~L 80 (147)
||++|...|..-|..
T Consensus 264 iN~qle~l~~eYr~~ 278 (359)
T PF10498_consen 264 INNQLEPLIQEYRSA 278 (359)
T ss_pred HHHHhHHHHHHHHHH
Confidence 444444444443333
No 207
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=45.96 E-value=6.8 Score=37.18 Aligned_cols=84 Identities=24% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCC------cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTT------EFKKVKAASEKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~------~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
+|..|+.++...-..+..|...+..|+.++..+...... ........+...|.+++.+++.-+..+..|...+.
T Consensus 188 qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~ 267 (859)
T PF01576_consen 188 QLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLR 267 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHH
Confidence 455555555555444444555555555555544433211 12334455677777888888777777777777776
Q ss_pred HHHHHHHhhh
Q psy20 136 RLLDELLDLK 145 (147)
Q Consensus 136 ~l~~~~ed~r 145 (147)
++..+++.++
T Consensus 268 ~le~e~~~L~ 277 (859)
T PF01576_consen 268 QLEHELEQLR 277 (859)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 208
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=45.87 E-value=64 Score=22.52 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
|.++|.+|+.+-.+-..|..+.-.+..++-
T Consensus 6 L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig 35 (102)
T TIGR01801 6 LEDLRAEVDQLNRQILALISRRGEVVAQIG 35 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444444444433333
No 209
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=45.85 E-value=59 Score=21.91 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
.++.++..+.+.+..++.+|.+|+.++.
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4466777777777777777777776553
No 210
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=45.66 E-value=60 Score=21.05 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
.+|..+=.+|-.+..++..+..++..++.
T Consensus 6 ~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~ 34 (76)
T TIGR01807 6 NKIDAIDDRILDLLSERATYAQAVGELKG 34 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555544443
No 211
>PRK09039 hypothetical protein; Validated
Probab=45.63 E-value=1.9e+02 Score=24.49 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=10.6
Q ss_pred HHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy20 65 NLNDRLAQYIELVQKLQNDKASLEYS 90 (147)
Q Consensus 65 ~LNdRLA~YIekVR~LE~~N~~Le~k 90 (147)
.|..+++..=..-..++.....|+..
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333333444444444443
No 212
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.58 E-value=1.7e+02 Score=24.05 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=37.7
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC---CcccCchHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHT---TEFKKVKAASEKEIEDIRKALDRESSS 126 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~---~~~~~~~~~ye~ei~~lR~~v~~l~~e 126 (147)
|.+|+..+.++.+ +|..|+++-..|.++|...+..-. +.....+..---.|.+|..+|..+..+
T Consensus 69 k~eLqe~eek~e~---~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~ 135 (258)
T PF15397_consen 69 KAELQEWEEKEES---KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS 135 (258)
T ss_pred HHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5667777777764 566677777777776655443321 112233444344778888888776654
No 213
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=45.55 E-value=80 Score=20.33 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=22.7
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
+.+..+..++-..=+++..||+.+..++.++..+.
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~ 40 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLN 40 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666677777777777777765543
No 214
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=45.51 E-value=2.1e+02 Score=27.42 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy20 108 ASEKEIEDIRKALD 121 (147)
Q Consensus 108 ~ye~ei~~lR~~v~ 121 (147)
.|+.++..++..|+
T Consensus 491 ~~d~e~~rik~ev~ 504 (861)
T PF15254_consen 491 QFDIETTRIKIEVE 504 (861)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 215
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=45.39 E-value=1e+02 Score=21.38 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
...+.++|.+||.+-.+-..|..+.-.+..++-.+|
T Consensus 7 ~~~L~~lR~~ID~ID~~iv~LL~eR~~~~~~ia~~K 42 (101)
T PRK07075 7 CTGLDDIREAIDRLDRDIIAALGRRMQYVKAASRFK 42 (101)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677777777777776666666666666665555
No 216
>KOG0995|consensus
Probab=45.33 E-value=1.7e+02 Score=26.91 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLY 92 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~ 92 (147)
++-+.|+.-|+.|-.-|.-+......-..|+.++.
T Consensus 235 ~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~ 269 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMINEREKDPGKEESLREKKA 269 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 44445555555555555544444444444444443
No 217
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.26 E-value=2.8e+02 Score=28.44 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=42.0
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCC---cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTT---EFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~---~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
++++.|...++.|...+..++++...++..+..+..-+.. ..-.+ ...+..+.++...+.....+...++-++..+
T Consensus 390 eeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~Sd-EeLe~~LenF~aklee~e~qL~elE~kL~~l 468 (1486)
T PRK04863 390 EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTA-DNAEDWLEEFQAKEQEATEELLSLEQKLSVA 468 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666655555555443333210 01111 1224455555555555555555555555555
Q ss_pred HHHHHhhh
Q psy20 138 LDELLDLK 145 (147)
Q Consensus 138 ~~~~ed~r 145 (147)
...++.|+
T Consensus 469 ea~leql~ 476 (1486)
T PRK04863 469 QAAHSQFE 476 (1486)
T ss_pred HHHHHHHH
Confidence 55555543
No 218
>KOG0978|consensus
Probab=45.21 E-value=1.7e+02 Score=27.58 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.+.+|+..++.....-..|+.++.....++++|
T Consensus 567 ~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~ 599 (698)
T KOG0978|consen 567 SLEDLQIELEKSEAKLEQIQEQYAELELELEIE 599 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 219
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=45.04 E-value=96 Score=21.00 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHH--HHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSL--YSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSK 127 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki--~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek 127 (147)
=||++-+-|-.|+-.|+.+ .+|.+...+.+++ ..+.+.-+ ..-|..-|.+.+++|++-..+.
T Consensus 6 f~k~~~a~lv~~i~dYL~~--E~~~evg~~~Ae~fleFis~elG------pyfYNQGi~da~a~i~ekl~d~ 69 (82)
T COG5460 6 FEKQEKAALVTRIRDYLTR--ETETEVGKFDAEFFLEFISGELG------PYFYNQGIKDARAVIEEKLADM 69 (82)
T ss_pred ccHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHhhhh------HHHHhhhhHHHHHHHHHHHHHH
Confidence 4688888999999999985 4444455555543 33433333 1345677888888887655443
No 220
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.91 E-value=1.2e+02 Score=22.09 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=12.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 74 IELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
.++++.++.++..|...+.-++..
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~ 81 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQ 81 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 221
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=44.71 E-value=89 Score=20.53 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
+....+|+........+++.|..+++++...++.+
T Consensus 27 q~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 27 QSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455777777777777777777777777766654
No 222
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=44.64 E-value=1.7e+02 Score=23.60 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=22.9
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
+++.--+..|..+-++++.|+.+.+.++.+-..|
T Consensus 19 ee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~L 52 (246)
T PF00769_consen 19 EEMRRAQEALEESEETAEELEEKLKQAEEEAEEL 52 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888888877777655544433
No 223
>KOG2467|consensus
Probab=44.50 E-value=99 Score=27.26 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCCCCChhhhhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHH--HHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 45 PGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLE--YSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 45 ~~~~~~~~~~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le--~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
-++|.-+.+...+++.++ .+.||+++-.+-.+-+... .++..++.... ....+..++.+||..|++
T Consensus 398 iGtPAmTsRG~~e~df~~-------v~~fi~~av~i~~~~~~~~~~~~lkdf~~~~~-----~~~~~~~~v~~Lr~~Ve~ 465 (477)
T KOG2467|consen 398 IGTPAMTSRGFGEEDFEK-------VADFIDRAVKIALEIQKEAGGKKLKDFKKFLS-----ENKVMSEEVAELRKRVEE 465 (477)
T ss_pred ccchhhcccCccHHHHHH-------HHHHHHHHHHHHHHHHhhcccchHHHHHHHhc-----cCchhHHHHHHHHHHHHH
Confidence 344433334444455544 4788888776644333322 22322222211 112234566666666655
Q ss_pred HH
Q psy20 123 ES 124 (147)
Q Consensus 123 l~ 124 (147)
..
T Consensus 466 fa 467 (477)
T KOG2467|consen 466 FA 467 (477)
T ss_pred HH
Confidence 43
No 224
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=44.25 E-value=1.7e+02 Score=23.74 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=33.9
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC--------CcccCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESHT--------TEFKKVKAAS---EKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~--------~~~~~~~~~y---e~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
+...+.+-..+..|..++..++.+++....... +.....+..| ...+.+.+.+++.+..++.....+++
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555555556666666666666655443321 1111222322 34555666666665555444444444
No 225
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=44.17 E-value=47 Score=29.72 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=34.1
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHH
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
-|-|.+||+-|+.||. .|...+++++.......-..+..|.+-|++|+-++....
T Consensus 327 ~d~L~~f~~~v~~lE~---el~~~~~e~k~~~~~~~r~~rd~FrtLLr~l~~~~ki~~ 381 (590)
T COG5104 327 KDILFSFIRYVRRLEK---ELLSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYY 381 (590)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Confidence 4678899999999984 455666665544332122334566666677666654433
No 226
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=44.13 E-value=67 Score=22.09 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=18.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 74 IELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
.=+++.+..+|.+|..+...+...+
T Consensus 22 ~~k~~ka~~~~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 22 WWKVKKAKKQNAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778888888888877766543
No 227
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=43.67 E-value=67 Score=21.17 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 115 DIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 115 ~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
++|.+||.+-.+-..|..+.-.+..++-.+
T Consensus 3 ~lR~~ID~ID~~lv~Ll~~R~~~~~~ia~~ 32 (82)
T TIGR01803 3 DIREAIDRIDLALVQALGRRMDYVKRASEF 32 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 228
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=43.54 E-value=1.4e+02 Score=22.48 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.5
Q ss_pred hhhhhhHHH
Q psy20 75 ELVQKLQND 83 (147)
Q Consensus 75 ekVR~LE~~ 83 (147)
.+|..++..
T Consensus 61 ~~v~~~~~~ 69 (146)
T PF05852_consen 61 NKVSSLETE 69 (146)
T ss_pred HHHHHHHHH
Confidence 334444333
No 229
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=43.51 E-value=92 Score=20.34 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=17.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 71 AQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 71 A~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
..|++.|..+......+...+..+....
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~ 30 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLH 30 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666654443
No 230
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.48 E-value=1.5e+02 Score=22.85 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=34.9
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHH
Q psy20 64 KNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSK 127 (147)
Q Consensus 64 q~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek 127 (147)
+.+.+.+..+-..+-.++.....|+.+|........ ...-+.....++..|+.++..+..+-
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~--~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE--ESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666677777777777777654432 33333334455566666555555443
No 231
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=43.46 E-value=1.9e+02 Score=24.06 Aligned_cols=14 Identities=0% Similarity=-0.014 Sum_probs=5.7
Q ss_pred HHHHHhhHHHHHhh
Q psy20 63 LKNLNDRLAQYIEL 76 (147)
Q Consensus 63 mq~LNdRLA~YIek 76 (147)
+..|+.++..+=.+
T Consensus 172 ~~fl~~ql~~~~~~ 185 (362)
T TIGR01010 172 IAFAENEVKEAEQR 185 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 232
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.25 E-value=49 Score=21.32 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=19.3
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
.++..||+-++.-=..+..|+.+.+.|..++..+.
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666666666666666666666666666665554
No 233
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=43.12 E-value=1.5e+02 Score=22.53 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy20 80 LQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSS-KSALAI 132 (147)
Q Consensus 80 LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~e-k~~l~l 132 (147)
|+.+.......+......+. +.......|+..+.+.|.+...+..+ +.++..
T Consensus 39 Le~R~~~I~~~L~~Ae~~k~-eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a 91 (155)
T PRK06569 39 FNNRQTNIQDNITQADTLTI-EVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES 91 (155)
T ss_pred HHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444332 24455667788887777777777666 444433
No 234
>KOG0994|consensus
Probab=42.97 E-value=1.7e+02 Score=29.62 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=48.8
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHH---------HHHHHHHHHHHHHhhcCCc-cc-CchHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQN---------DKASLEYSLYSIEESHTTE-FK-KVKAASEKEIEDIRKALDRESSSKS 128 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~---------~N~~Le~ki~~l~~~~~~~-~~-~~~~~ye~ei~~lR~~v~~l~~ek~ 128 (147)
-..||.|-+|+-.+|++...|++ ....++.|+.+++.-.+.. .+ .+-...-..+..||++|..++....
T Consensus 1170 D~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~ 1249 (1758)
T KOG0994|consen 1170 DAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLP 1249 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35789999999999999888754 4456777777766554311 11 1122234456788888877776666
Q ss_pred HHHHHHH
Q psy20 129 ALAIEKR 135 (147)
Q Consensus 129 ~l~le~~ 135 (147)
.++..+.
T Consensus 1250 ~~E~~Ls 1256 (1758)
T KOG0994|consen 1250 QEEETLS 1256 (1758)
T ss_pred hhhhhhh
Confidence 5555444
No 235
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.96 E-value=2.2e+02 Score=26.93 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy20 108 ASEKEIEDIRKALDRES 124 (147)
Q Consensus 108 ~ye~ei~~lR~~v~~l~ 124 (147)
.+...+.+++.+++.+.
T Consensus 574 ~a~~~l~~a~~~~~~~i 590 (782)
T PRK00409 574 EAQQAIKEAKKEADEII 590 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555444433
No 236
>PRK07248 hypothetical protein; Provisional
Probab=42.95 E-value=90 Score=20.71 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
|.++|.+||.+-.+-..|..+.-.+..++
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I 31 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVALLEKRMALVEQV 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554444444444444433333
No 237
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=42.85 E-value=86 Score=21.61 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
..+|.++|..|+.+-.+--.|..+.-++..++-.+|
T Consensus 7 ~~~L~~lR~~Id~iD~~ll~Ll~eR~~l~~~Va~~K 42 (101)
T COG1605 7 MEELEELREEIDEIDRELLDLLAERLELAKEVGEAK 42 (101)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888877777777777777776666655
No 238
>KOG3856|consensus
Probab=42.71 E-value=74 Score=23.50 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
+.++|++|.++..++..++-.++||+.++=+|
T Consensus 12 ye~~kaEL~elikkrqe~eetl~nLe~qIY~~ 43 (135)
T KOG3856|consen 12 YEDTKAELAELIKKRQELEETLANLERQIYAF 43 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888889999999999999887555
No 239
>PRK14127 cell division protein GpsB; Provisional
Probab=42.61 E-value=69 Score=22.88 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC
Q psy20 63 LKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHT 99 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~ 99 (147)
|...-+-+..|+.....|+.+|..|+.++..+..+..
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555566677777888888888888887776543
No 240
>KOG2077|consensus
Probab=42.45 E-value=1.6e+02 Score=27.42 Aligned_cols=28 Identities=29% Similarity=0.213 Sum_probs=15.4
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 66 LNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 66 LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
||----..|.||-.|--+|..|..++..
T Consensus 320 LNiVKNDLIakVDeL~~E~~vLrgElea 347 (832)
T KOG2077|consen 320 LNIVKNDLIAKVDELTCEKDVLRGELEA 347 (832)
T ss_pred HHHHHHHHHHHHHhhccHHHHHhhHHHH
Confidence 4444445667776665555555544443
No 241
>PF13166 AAA_13: AAA domain
Probab=42.42 E-value=2.7e+02 Score=25.36 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=15.2
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
.+..+|.....+=..|..++.+-..+..++..
T Consensus 371 ~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~ 402 (712)
T PF13166_consen 371 IIDELNELIEEHNEKIDNLKKEQNELKDKLWL 402 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444555555444444444433
No 242
>PRK09239 chorismate mutase; Provisional
Probab=42.41 E-value=94 Score=21.76 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
...+.++|.+|+.+-.+-..|..+.-.+..++-.+|
T Consensus 9 ~~~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K 44 (104)
T PRK09239 9 PAELAALRQSIDNIDAALIHMLAERFKCTQAVGVLK 44 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777776666666666555555555554444
No 243
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=42.30 E-value=1.5e+02 Score=22.42 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy20 129 ALAIEKRRLLDELLDLK 145 (147)
Q Consensus 129 ~l~le~~~l~~~~ed~r 145 (147)
+|..++.+++.+++..|
T Consensus 135 ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 135 KIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555555443
No 244
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.17 E-value=1.3e+02 Score=24.54 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 81 QNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 81 E~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
|-.|....+-++.|+.- ++-..++..| .+++..++++..+|..|.-++..++.+++++
T Consensus 111 El~nAlvRAGLktL~~v--~~~~d~ke~~----ee~kekl~E~~~EkeeL~~eleele~e~ee~ 168 (290)
T COG4026 111 ELKNALVRAGLKTLQRV--PEYMDLKEDY----EELKEKLEELQKEKEELLKELEELEAEYEEV 168 (290)
T ss_pred HHHHHHHHHHHHHHhcc--chhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555432 1223344443 3566666666666666666666666555544
No 245
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=42.05 E-value=51 Score=27.19 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=15.4
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 66 LNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 66 LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
.+..+..+..++-.||++|+.|...+..
T Consensus 81 ~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 81 ELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333444455666666666666655443
No 246
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=41.92 E-value=37 Score=23.54 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=20.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 71 AQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 71 A~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
-+.+|++..|+++++.|..++..+.
T Consensus 74 l~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 74 LTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999998876543
No 247
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.74 E-value=2.1e+02 Score=28.36 Aligned_cols=9 Identities=22% Similarity=0.446 Sum_probs=3.2
Q ss_pred hhHHHHHhh
Q psy20 68 DRLAQYIEL 76 (147)
Q Consensus 68 dRLA~YIek 76 (147)
+++..|.+.
T Consensus 352 ~~l~~~~~~ 360 (1201)
T PF12128_consen 352 DQLPEWRNE 360 (1201)
T ss_pred HhhHHHHHH
Confidence 333333333
No 248
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=41.65 E-value=2.7e+02 Score=25.75 Aligned_cols=61 Identities=8% Similarity=0.135 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 81 QNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 81 E~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
+++-...|.++..++.+.+--...-....+.+|.++..++..+..+....+...+.++..+
T Consensus 207 ~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 207 SKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555443111122334557888888888887777777666666666544
No 249
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.37 E-value=1.1e+02 Score=20.64 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 65 NLNDRLAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 65 ~LNdRLA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
.|-+-|...+++|-....+|.+|+.+-..|
T Consensus 27 ~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~L 56 (80)
T PF10224_consen 27 ELQDSLEALSDRVEEVKEENEKLESENEYL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666666666666655444
No 250
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=41.20 E-value=1.1e+02 Score=20.54 Aligned_cols=19 Identities=37% Similarity=0.636 Sum_probs=12.4
Q ss_pred CchHHHHHHHHHHHHHHHH
Q psy20 104 KVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 104 ~~~~~ye~ei~~lR~~v~~ 122 (147)
.++..|+.+|..||.+|+.
T Consensus 57 kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 57 KMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566677777777776654
No 251
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=40.84 E-value=88 Score=22.87 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
++++..++.+|-...+++..|...+.....+|..++.+...-..++-. ....++-++..-..+..+-..|...++.+..
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~-v~~~~eilr~~g~~l~~eEe~L~~~le~l~~ 121 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLR-VLRKQEILRNRGYALSPEEEELRKRLEALEA 121 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 445556677777777777777555555666666665554310111111 1122233333333344444455555555544
Q ss_pred HHH
Q psy20 140 ELL 142 (147)
Q Consensus 140 ~~e 142 (147)
++.
T Consensus 122 ~l~ 124 (141)
T PF13874_consen 122 QLN 124 (141)
T ss_dssp ---
T ss_pred HHc
Confidence 443
No 252
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=40.60 E-value=2.6e+02 Score=25.26 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 73 YIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 73 YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
-++.++.|+.+-..|+.....+...-. .....++.....+.++...+..+..+...+.-.+.+++.+
T Consensus 342 e~~~~~~l~~~l~~l~~~~~~~~~~i~-~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~d 408 (560)
T PF06160_consen 342 ELEIVRELEKQLKELEKRYEDLEERIE-EQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKD 408 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665555443 2344455555666666666666666666666666555544
No 253
>KOG0982|consensus
Probab=39.93 E-value=1.7e+02 Score=26.16 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=6.4
Q ss_pred hhhhHHHHHHHHHHH
Q psy20 77 VQKLQNDKASLEYSL 91 (147)
Q Consensus 77 VR~LE~~N~~Le~ki 91 (147)
|+.||.+|..|...+
T Consensus 306 ~qqleeentelRs~~ 320 (502)
T KOG0982|consen 306 DQQLEEENTELRSLI 320 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 254
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.74 E-value=83 Score=28.15 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEK 134 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~ 134 (147)
...++...|.++..++..|+.++
T Consensus 98 q~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 98 QRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555544
No 255
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=39.72 E-value=1.5e+02 Score=27.69 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIE 133 (147)
Q Consensus 80 LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le 133 (147)
|+..=+.|+.++..|+..-. ..+|...|..-+.++...++.+.....++.-.
T Consensus 247 L~~k~~~L~~e~~~LK~ELi--edRW~~vFr~l~~q~~~m~esver~~~kl~~~ 298 (683)
T PF08580_consen 247 LEKKWKKLEKEAESLKKELI--EDRWNIVFRNLGRQAQKMCESVERSLSKLQEA 298 (683)
T ss_pred HHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444455555544433 45566666666677777777666665555444
No 256
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.71 E-value=1.2e+02 Score=20.55 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 76 LVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
||..-=.....|..+|.+++++.. ....++..++..-+.+..++..+.-+..+++.-+..+-
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~--------~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNN--------SLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455567777777776542 12345556666666677777778777777777665553
No 257
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.68 E-value=1.1e+02 Score=22.24 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=31.9
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
.....+-...|++|+-.+=-+|..||.+-..|..++..++..
T Consensus 65 k~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677899998888788888888888888888777553
No 258
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=39.65 E-value=55 Score=26.03 Aligned_cols=21 Identities=0% Similarity=0.012 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSAL 130 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l 130 (147)
...+.+--..|..+..|..+.
T Consensus 63 ~~~LrEkEErILaLEad~~kW 83 (205)
T PF12240_consen 63 KELLREKEERILALEADMTKW 83 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555554
No 259
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.62 E-value=59 Score=29.06 Aligned_cols=12 Identities=0% Similarity=0.091 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q psy20 109 SEKEIEDIRKAL 120 (147)
Q Consensus 109 ye~ei~~lR~~v 120 (147)
++.++..|+.++
T Consensus 109 LEaE~~~Lk~Ql 120 (475)
T PRK13729 109 LGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHH
Confidence 345555555555
No 260
>KOG3564|consensus
Probab=39.55 E-value=3e+02 Score=25.10 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=42.9
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 68 DRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 68 dRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.-|..|-+|...+..+-.+.+..+.....+ ...++-.+.+.|.+|+....++.+++.+++.+...+..+
T Consensus 35 k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk--------~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i 103 (604)
T KOG3564|consen 35 KDFEDFEEKWKRTDAELGKYKDLLAKAETK--------RSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI 103 (604)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHh--------hhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345666666555554444433333222211 234556677889999998888888888888887765544
No 261
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=39.28 E-value=1.3e+02 Score=20.72 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=42.9
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCC---cccCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy20 64 KNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTT---EFKKVKAASEKEIEDIRKALDRESSSKSALAI---EKRRL 137 (147)
Q Consensus 64 q~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~---~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~l---e~~~l 137 (147)
..++.-|....+.++.||..|..-..+...+...-.. ....+...| .++...-++|+.+...-..|+. ++|.+
T Consensus 10 ~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~-~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~y 88 (99)
T PF10046_consen 10 KYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKY-EELQPYLQQIDQIEEQVTELEQTVYELDEY 88 (99)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777788888888777777666554321 012233333 4555666666665555555443 34444
Q ss_pred HHHHH
Q psy20 138 LDELL 142 (147)
Q Consensus 138 ~~~~e 142 (147)
-.+++
T Consensus 89 sk~LE 93 (99)
T PF10046_consen 89 SKELE 93 (99)
T ss_pred HHHHH
Confidence 44433
No 262
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=39.27 E-value=1.3e+02 Score=25.59 Aligned_cols=63 Identities=11% Similarity=0.203 Sum_probs=44.5
Q ss_pred HhHHHHH-HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHH
Q psy20 57 RQEKNEL-KNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKAL 120 (147)
Q Consensus 57 ~~EKe~m-q~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v 120 (147)
..||+.. +.|++--.+|-.|++.||.+|..+-.+-..+...- .+...+-.+|.+++..-...|
T Consensus 21 ~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qy-recqell~lyq~ylseqq~kl 84 (328)
T PF15369_consen 21 SEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQY-RECQELLSLYQKYLSEQQEKL 84 (328)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3566654 56888888999999999999987766655554332 245667788888887655444
No 263
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.23 E-value=2.3e+02 Score=23.74 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHH----HHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQN----DKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~----~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
++-.+.|+..+......+-.++. +-..+..+|........ .....-.....++..+...|.+....+..+..+|.
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~-~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM-IKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhc
Q psy20 136 RLLDELLDLKN 146 (147)
Q Consensus 136 ~l~~~~ed~r~ 146 (147)
.+...+++-+.
T Consensus 257 ~ae~~~~~~r~ 267 (312)
T smart00787 257 EAEKKLEQCRG 267 (312)
T ss_pred HHHHHHHhcCC
No 264
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=39.18 E-value=47 Score=24.67 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCCCChhhhh-hHhHHHHHHHHHhhHHHHHh
Q psy20 35 QPQPQSQPPRPGSPLSPTIIS-RRQEKNELKNLNDRLAQYIE 75 (147)
Q Consensus 35 ~~~~~s~~~~~~~~~~~~~~~-r~~EKe~mq~LNdRLA~YIe 75 (147)
+||+.+.+.-+.-|..|+... ...|++-|-.+++.|...|.
T Consensus 98 fGG~~gr~~k~~IpARpfl~l~~~deqei~d~i~~yf~~li~ 139 (140)
T COG5005 98 FGGKTGRPRKVAIPARPFLGLTPDDEQEIMDDIQDYFSELIQ 139 (140)
T ss_pred hcCcCCCCccCccCCCcccccChhhHHHHHHHHHHHHHHhcc
Confidence 566666555555555554433 46788889999999987653
No 265
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.14 E-value=1.3e+02 Score=23.24 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy20 78 QKLQNDKASLEYSLYSI 94 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l 94 (147)
..|+.++..|+.++..+
T Consensus 130 ~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 130 EELEEEKEELEKQVQEL 146 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 266
>KOG4848|consensus
Probab=38.90 E-value=2e+02 Score=22.91 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=42.9
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH-HHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYS-IEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~-l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
++|..+|++=..|.+-...+-..|+.+.++-.+ ...... +...--..|-..|.++.+++.....+...-...+..+..
T Consensus 96 e~~rE~~~~~~e~~e~l~km~EslRi~~~~e~~k~~~Re~-~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~ 174 (225)
T KOG4848|consen 96 EEIREFNNAKKEYKELLKKMRESLRILYTKEPEKFTFREA-EIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIR 174 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Confidence 566777777777766655555555554432211 100000 111112345666777777776666665555555555555
Q ss_pred HHHh
Q psy20 140 ELLD 143 (147)
Q Consensus 140 ~~ed 143 (147)
++.+
T Consensus 175 eiqe 178 (225)
T KOG4848|consen 175 EIQE 178 (225)
T ss_pred HHHH
Confidence 5544
No 267
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=38.76 E-value=2.1e+02 Score=27.08 Aligned_cols=13 Identities=8% Similarity=0.503 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDR 122 (147)
Q Consensus 110 e~ei~~lR~~v~~ 122 (147)
...+.+++.+++.
T Consensus 571 ~~~~~~a~~~~~~ 583 (771)
T TIGR01069 571 QEALKALKKEVES 583 (771)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 268
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.59 E-value=2.6e+02 Score=24.23 Aligned_cols=35 Identities=20% Similarity=0.080 Sum_probs=20.8
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
..++..|..++..==-+|..|..+-..|+.++...
T Consensus 260 ~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 260 EKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 44455555555444456777777777777766543
No 269
>PF15276 PP1_bind: Protein phosphatase 1 binding
Probab=38.32 E-value=23 Score=23.07 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCC
Q psy20 5 SKRGATPAKTPSASRG 20 (147)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (147)
-+||+||.++...+++
T Consensus 27 lkrG~tP~~~~~~~~~ 42 (64)
T PF15276_consen 27 LKRGATPVRRSDPSSS 42 (64)
T ss_pred cCCCCCcccccCCCCC
Confidence 4799999988765544
No 270
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.28 E-value=1.6e+02 Score=21.47 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCc---------hHHHHHHHHHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKV---------KAASEKEIEDIRKALDRESSSK 127 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~---------~~~ye~ei~~lR~~v~~l~~ek 127 (147)
.+--.++|.|-+.|..+|-.-..+|++-+..+.-+.++..-.. ...+ ...++.-+.+|...++.+...-
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~e--D~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri 86 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE--DAPVYKKVGNLLVKVSKEEAVDELEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999998888899988888777777654321 2111 1122334455555555555555
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy20 128 SALAIEKRRLLDELLDLK 145 (147)
Q Consensus 128 ~~l~le~~~l~~~~ed~r 145 (147)
..|+-+...++..+++++
T Consensus 87 ~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 87 KTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555544
No 271
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=38.25 E-value=82 Score=20.81 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
.+|..+=.+|-.+..++..+..++..++.
T Consensus 6 ~~ID~ID~~il~Ll~~R~~~~~~ia~~K~ 34 (83)
T TIGR01799 6 GEIDGVDQELLHLLAKRLELVAQVGKVKH 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555544443
No 272
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=38.10 E-value=2e+02 Score=22.70 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHhhHH----------HHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLA----------QYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSS 126 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA----------~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~e 126 (147)
.+|-..|+..|.||- +|+|.-| +.-++|..+|+-+-.-........-..|...|.+|-...+.+..+
T Consensus 54 l~EIR~LKe~NqkLqedNqELRdLCCFLDddR---qKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rE 130 (195)
T PF10226_consen 54 LNEIRGLKEVNQKLQEDNQELRDLCCFLDDDR---QKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRE 130 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhH---HHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555555555543 3443322 223445555554322111001122356777777777767777777
Q ss_pred HHHH
Q psy20 127 KSAL 130 (147)
Q Consensus 127 k~~l 130 (147)
|..|
T Consensus 131 N~eL 134 (195)
T PF10226_consen 131 NLEL 134 (195)
T ss_pred HHHH
Confidence 6543
No 273
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=37.84 E-value=1.7e+02 Score=21.87 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 78 QKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
...-.+.+.|..|+..++..... . ..-+.|-+ ...++++++.+..|-..+..++...+..
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~-i-S~qDeFAk-waKl~Rk~~kl~~el~~~~~~~~~~~~~ 95 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA-I-SAQDEFAK-WAKLNRKLDKLEEELEKLNKSLSSEKSS 95 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-S--TTTSHHH-HHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHc-C-CcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888776642 2 22223333 3457888888888877776666554443
No 274
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=37.79 E-value=56 Score=19.89 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=17.5
Q ss_pred HHHHHHHhhHHHHHhhhhhhHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQN 82 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~ 82 (147)
..+|.||.+|...-.|+-.||.
T Consensus 23 ~~lq~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 23 SALQSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999998888888777764
No 275
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.72 E-value=3.5e+02 Score=25.39 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=9.2
Q ss_pred hHhHHHHHHHHHhhHHHH
Q psy20 56 RRQEKNELKNLNDRLAQY 73 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~Y 73 (147)
+..||..|+.|=.||+.=
T Consensus 483 Rq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 483 RQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 276
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=37.48 E-value=96 Score=18.85 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
|+.||++|..+..+-..|+.....++
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777666555555555444433
No 277
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=37.47 E-value=2.3e+02 Score=25.51 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=28.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhcC--CcccCchHHHHHHHHHHHHHHHHHH
Q psy20 73 YIELVQKLQNDKASLEYSLYSIEESHT--TEFKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 73 YIekVR~LE~~N~~Le~ki~~l~~~~~--~~~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
.-+.+..++.+|..|..++..+...-. .........+..+|..+...+..+.
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~ 368 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT 368 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445577888889988888876621 0011112334555666555555433
No 278
>KOG3156|consensus
Probab=37.44 E-value=1.7e+02 Score=23.59 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy20 128 SALAIEKRRLLDELLDLK 145 (147)
Q Consensus 128 ~~l~le~~~l~~~~ed~r 145 (147)
++|..|+.+++.+++++|
T Consensus 177 ~kId~Ev~~lk~qi~s~K 194 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQIESVK 194 (220)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888888888888776
No 279
>KOG2751|consensus
Probab=37.33 E-value=2.6e+02 Score=24.86 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=9.8
Q ss_pred hHHHHHHHHHhhHHHHHhh
Q psy20 58 QEKNELKNLNDRLAQYIEL 76 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIek 76 (147)
.|-+.|..-++.-..|+++
T Consensus 150 ~e~~~~~~e~~~Y~~~l~~ 168 (447)
T KOG2751|consen 150 KEVEDAEDEVDTYKACLQR 168 (447)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555543
No 280
>KOG0976|consensus
Probab=37.07 E-value=2.9e+02 Score=26.97 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=16.5
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 73 YIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 73 YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
|-.-|-.||.+-+.++.+|.+|+.+.
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c 115 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKC 115 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33445556777777777777766554
No 281
>KOG4593|consensus
Probab=37.06 E-value=3.6e+02 Score=25.47 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=19.6
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
+++.+|--+..-|...-+||..+..+..++..+++.
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~ 273 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQLREELATLREN 273 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555666555555555544443
No 282
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=37.03 E-value=1.2e+02 Score=19.81 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHH
Q psy20 79 KLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSS 126 (147)
Q Consensus 79 ~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~e 126 (147)
.|.+.|..+......+..... ........|...+.+.|..|+.+..+
T Consensus 21 alrQ~N~~Mker~e~l~~wqe-~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 21 ALRQNNQAMKERFEELLAWQE-KQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455666666666666554433 23344566666777777777766544
No 283
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.89 E-value=1.3e+02 Score=21.48 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
++|..|-..++..|+.-..|..+|..|...+..+
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566666666666666666666666554
No 284
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=36.74 E-value=4e+02 Score=26.95 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEK 134 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~ 134 (147)
.++.+++.++..+.........++
T Consensus 333 ~eL~el~~ql~~~~~~a~~~~~~~ 356 (1353)
T TIGR02680 333 EELERARADAEALQAAAADARQAI 356 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444433333333
No 285
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=36.70 E-value=2.6e+02 Score=23.52 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=5.7
Q ss_pred HhHHHHHHHHHh
Q psy20 57 RQEKNELKNLND 68 (147)
Q Consensus 57 ~~EKe~mq~LNd 68 (147)
..-+.++..|++
T Consensus 9 ~~~~~~~r~l~~ 20 (378)
T TIGR01554 9 EEIVAEIRSLLD 20 (378)
T ss_pred HHHHHHHHHHHh
Confidence 334444555554
No 286
>KOG0561|consensus
Probab=36.12 E-value=84 Score=26.75 Aligned_cols=18 Identities=11% Similarity=0.397 Sum_probs=14.4
Q ss_pred hhHhHHHHHHHHHhhHHH
Q psy20 55 SRRQEKNELKNLNDRLAQ 72 (147)
Q Consensus 55 ~r~~EKe~mq~LNdRLA~ 72 (147)
...||+.-||+.|.-|-+
T Consensus 64 ANsNERRRMQSINAGFqs 81 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQS 81 (373)
T ss_pred hcchHHHHHHhhhHHHHH
Confidence 346999999999977754
No 287
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=36.01 E-value=4e+02 Score=25.60 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy20 126 SKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 126 ek~~l~le~~~l~~~~ed~r 145 (147)
|.++|.+|++.+...++.|+
T Consensus 495 e~~rik~ev~eal~~~k~~q 514 (861)
T PF15254_consen 495 ETTRIKIEVEEALVNVKSLQ 514 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555444444443
No 288
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.80 E-value=1.9e+02 Score=21.81 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=19.1
Q ss_pred hhhHhHHHHHHHHHhhHHHHHhhhhh-hHHHHHHHHH
Q psy20 54 ISRRQEKNELKNLNDRLAQYIELVQK-LQNDKASLEY 89 (147)
Q Consensus 54 ~~r~~EKe~mq~LNdRLA~YIekVR~-LE~~N~~Le~ 89 (147)
..+.++...|..-+.+|-.=|++++. |.++...|..
T Consensus 69 ~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 69 NSRKSEFAELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666665665555 4444444444
No 289
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=35.73 E-value=2.6e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=9.3
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHH
Q psy20 66 LNDRLAQYIELVQKLQNDKASLEY 89 (147)
Q Consensus 66 LNdRLA~YIekVR~LE~~N~~Le~ 89 (147)
|+..++.+-..+..++.+-..++.
T Consensus 149 l~~~i~~~~~~i~~~~~~l~~~~~ 172 (423)
T TIGR01843 149 ILAQIKQLEAELAGLQAQLQALRQ 172 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443444444433333333
No 290
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=35.64 E-value=1.1e+02 Score=20.10 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
..+|..+=.+|-.+..++..+..++..++.
T Consensus 5 R~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~ 34 (81)
T TIGR01805 5 RKKIDEIDDKLVVLFEERMEVVKEIAAYKK 34 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566666666555555544
No 291
>KOG0837|consensus
Probab=35.52 E-value=1.9e+02 Score=24.02 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=36.2
Q ss_pred hHhHHHHHHH--HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHH
Q psy20 56 RRQEKNELKN--LNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRE 123 (147)
Q Consensus 56 r~~EKe~mq~--LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l 123 (147)
..+|+.-+.- ||+|.|.-=.+||.|| +...||.+...++... .....++..|+.+|.++
T Consensus 200 e~qe~~kleRkrlrnreaa~Kcr~rkLd-risrLEdkv~~lk~~n--------~~L~~~l~~l~~~v~e~ 260 (279)
T KOG0837|consen 200 EDQEKIKLERKRLRNREAASKCRKRKLD-RISRLEDKVKTLKIYN--------RDLASELSKLKEQVAEL 260 (279)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhhhhhhhhhh--------hhHHHHHHHHHHHHHHH
Confidence 4566665555 9999998877777775 4566777766554332 22244555666655443
No 292
>KOG1655|consensus
Probab=35.37 E-value=2.3e+02 Score=22.61 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=43.2
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc--------ccCchHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE--------FKKVKAASEKEIEDIRKALDRESS 125 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~--------~~~~~~~ye~ei~~lR~~v~~l~~ 125 (147)
-+.++|.|--+.=+|+..|+++-.++..+|...+...+.. .-.-+.+||.....|..|-+.+..
T Consensus 20 ai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQ 91 (218)
T KOG1655|consen 20 AIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQ 91 (218)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 5677888888888888889888888888887654433211 111246788777777777655443
No 293
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=35.22 E-value=1.1e+02 Score=21.03 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSAL 130 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l 130 (147)
..+-..|..+|..-+. |+-.|...-..|...+..+..+-. . -..|...|.++-.+|..+..--..|
T Consensus 20 ~~d~~LLe~mN~~~~~---kY~~~~~~~~~l~~~~~~l~~k~~----~-l~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 20 NEDYNLLENMNKATSL---KYKKMKDIAAGLEKNLEDLNQKYE----E-LQPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777765543 444444444445555544444321 1 1234445555555555444433333
No 294
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=35.12 E-value=3.5e+02 Score=24.59 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
-.....||..++---+.|..++....++++.||
T Consensus 482 r~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 482 RRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555566666666666665
No 295
>KOG0612|consensus
Probab=35.10 E-value=4.4e+02 Score=26.68 Aligned_cols=9 Identities=11% Similarity=-0.009 Sum_probs=4.6
Q ss_pred CCCCCCCCC
Q psy20 11 PAKTPSASR 19 (147)
Q Consensus 11 ~~~~~~~~~ 19 (147)
||=--+|+.
T Consensus 396 PFIGfTy~~ 404 (1317)
T KOG0612|consen 396 PFIGFTYTH 404 (1317)
T ss_pred Ceeeeeecc
Confidence 444445655
No 296
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=34.98 E-value=1.8e+02 Score=21.18 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=43.3
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Q psy20 68 DRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIED------------IRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 68 dRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~------------lR~~v~~l~~ek~~l~le~~ 135 (147)
.|+..|..|=+.|..+++.|..-|..|..+--. .--++-....++.. .=+.|..+..|+..|.-|..
T Consensus 35 qrleel~~knqqLreQqk~L~e~i~~LE~RLRa-GlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~ 113 (120)
T PF10482_consen 35 QRLEELFSKNQQLREQQKTLHENIKVLENRLRA-GLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENK 113 (120)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356667777788999999998888877665421 22222222222211 22345666666666766666
Q ss_pred HHHHHH
Q psy20 136 RLLDEL 141 (147)
Q Consensus 136 ~l~~~~ 141 (147)
.+..++
T Consensus 114 ~L~eEl 119 (120)
T PF10482_consen 114 KLKEEL 119 (120)
T ss_pred HHHHHh
Confidence 666654
No 297
>smart00340 HALZ homeobox associated leucin zipper.
Probab=34.63 E-value=1e+02 Score=18.42 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
+=|++--+.++.||.+|+.|+..++.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666677888899999888877653
No 298
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=34.53 E-value=1.8e+02 Score=21.03 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=6.8
Q ss_pred HHHHHhhHHHHHhhh
Q psy20 63 LKNLNDRLAQYIELV 77 (147)
Q Consensus 63 mq~LNdRLA~YIekV 77 (147)
+..+.+.|.++++.+
T Consensus 113 ~~~~~~~l~~~~~~~ 127 (202)
T PF01442_consen 113 VDELEESLESRSEEL 127 (202)
T ss_dssp HHHHHHHHCHHHHHH
T ss_pred HHHHHHHhHHHHHHH
Confidence 334444444444443
No 299
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=34.49 E-value=13 Score=34.32 Aligned_cols=71 Identities=24% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhcCC--cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 73 YIELVQKLQNDKASLEYSLYSIEESHTT--EFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 73 YIekVR~LE~~N~~Le~ki~~l~~~~~~--~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
|=.+|+.||.+|..|-..+..+.+.-.. ....--..|..+|.+|...+.+.......+..++..+...++.
T Consensus 330 lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~ 402 (713)
T PF05622_consen 330 LKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA 402 (713)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555443333333322211 0111123456666677766666666666666666666555543
No 300
>KOG3119|consensus
Probab=34.42 E-value=1.5e+02 Score=24.22 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.++...|..+..||..|..++..++.++..|+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777766664
No 301
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.31 E-value=73 Score=21.96 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALA 131 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~ 131 (147)
..++..|+.+++....++..|.
T Consensus 62 ~~E~e~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 62 KRENEQLKKKLDTEREEKQELL 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655543
No 302
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.28 E-value=3.8e+02 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.181 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHHHHH
Q psy20 76 LVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~ 93 (147)
.|..++.+-..|+.+|..
T Consensus 317 ~v~~l~~qi~~l~~~i~~ 334 (754)
T TIGR01005 317 RVVAAKSSLADLDAQIRS 334 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666666544
No 303
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.25 E-value=2.2e+02 Score=22.12 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=27.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCcccCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIEESHTTEFKKVK---AASEKEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~---~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
+-...++.++..|..++..+..-+. .-.... ...+.+|.+|++.-+.+...-.+++.|.+.+.
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~-~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQ-SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666655332221 011111 11244445555544444444444444444443
No 304
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.16 E-value=1.9e+02 Score=25.47 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=25.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 70 LAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEK 134 (147)
Q Consensus 70 LA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~ 134 (147)
++..-.++..-.++-..|+.+|..+...... ..+--......+..+++.|+++......|+.+.
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~-~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKSLETEIAS-LEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444555555444333221 111111223344444444544444444444433
No 305
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=33.96 E-value=1e+02 Score=23.43 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=21.4
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 63 LKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
...|+++|-.-.+||+.+|.....|..++..
T Consensus 107 a~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 107 AMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777666654
No 306
>KOG3990|consensus
Probab=33.95 E-value=2.8e+02 Score=23.09 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy20 108 ASEKEIEDIRKA-LDRESSSKSALAIEKRRL 137 (147)
Q Consensus 108 ~ye~ei~~lR~~-v~~l~~ek~~l~le~~~l 137 (147)
.|..+++.+... |+.+..+++.+.-++..|
T Consensus 263 e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l 293 (305)
T KOG3990|consen 263 EYQKELEKKHKERVQQLQKKKEESLKAIAQL 293 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556555444 555555555554444433
No 307
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.87 E-value=4e+02 Score=24.98 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
+..|.+.|++|+.+....-.-+.||..|+..+.+
T Consensus 621 fsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 621 FSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444444444444433
No 308
>PF08641 Mis14: Kinetochore protein Mis14 like; InterPro: IPR013950 Mis14 is a kinetochore protein which is known to be recruited to kinetochores independently of CENP-A [].
Probab=33.79 E-value=1.5e+02 Score=21.60 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=29.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
.||+.|+++-..|-.++..++.. .+..+...|...+...+..|..
T Consensus 40 ~rv~~l~~~~e~~~v~va~lRr~---~P~~i~~~~~~~~~~~~~~L~~ 84 (139)
T PF08641_consen 40 ERVRSLYDQLEDLTVEVAQLRRD---YPRKIAEAYAKSLKAEREILEE 84 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777666543 2566777777666555555544
No 309
>KOG0996|consensus
Probab=33.73 E-value=3.4e+02 Score=27.32 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=10.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 70 LAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 70 LA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
|-+.-.+-..||.++...+.++..
T Consensus 386 ~~~~k~~~~~~e~~~vk~~E~lK~ 409 (1293)
T KOG0996|consen 386 FESLKKKFQDLEREDVKREEKLKR 409 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445444444444433
No 310
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=33.35 E-value=4.4e+02 Score=25.18 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=39.7
Q ss_pred HHHHHHhhHHHHHhh-------hhhhHHHHHHHHHHHHHHHhhcCCc-------------ccCchHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIEL-------VQKLQNDKASLEYSLYSIEESHTTE-------------FKKVKAASEKEIEDIRKALD 121 (147)
Q Consensus 62 ~mq~LNdRLA~YIek-------VR~LE~~N~~Le~ki~~l~~~~~~~-------------~~~~~~~ye~ei~~lR~~v~ 121 (147)
.|..++.-+..|=.+ ++..|+++..|.+.+..++..-... .......|..+|.+++..++
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d 388 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD 388 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444222 2555666666666665554432100 11123344455556666665
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy20 122 RESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 122 ~l~~ek~~l~le~~~l~~~~ 141 (147)
....+...|+..|+++...+
T Consensus 389 ~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 389 KKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 311
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=33.24 E-value=3e+02 Score=23.36 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 79 KLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 79 ~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
.|.++-..++.++..+...-++.-..+.. ...+|++++.++..
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~-l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKR-AQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHHH
Confidence 34455556666666665544432223322 24555555555533
No 312
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=33.09 E-value=3e+02 Score=23.31 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=15.4
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
|+.-..|..-+..+-.++..+.-+|+.|..++...
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 33333343334444444444444455555544443
No 313
>KOG4343|consensus
Probab=33.00 E-value=1e+02 Score=28.19 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=37.8
Q ss_pred hhhhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 52 TIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 52 ~~~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
....|-..||-|++|-.||-..+...-.|..+|..|..+|.++...
T Consensus 293 A~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 293 ACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 3456778889999999999888888888989999888888886554
No 314
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=32.95 E-value=4.2e+02 Score=24.91 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy20 106 KAASEKEIEDIRKALDRESSS 126 (147)
Q Consensus 106 ~~~ye~ei~~lR~~v~~l~~e 126 (147)
...|..|++.++.++..+..-
T Consensus 634 Er~~~~EL~~~~~~l~~l~~s 654 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKAS 654 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666655554433
No 315
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=32.79 E-value=1.6e+02 Score=20.12 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=27.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 71 AQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 71 A~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
..-+-..-+++++|..|..+|..|+.+... .+.+ ..|-.+--.|+.++..
T Consensus 13 ~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~-nPev-tr~A~EN~rL~ee~rr 62 (86)
T PF12711_consen 13 DGKLPSESYLEEENEALKEEIQLLREQVEH-NPEV-TRFAMENIRLREELRR 62 (86)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHh-CHHH-HHHHHHHHHHHHHHHH
Confidence 333444466778888888888888776531 1222 2344444455555543
No 316
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=32.71 E-value=1.8e+02 Score=20.45 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 105 VKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 105 ~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
....|...|..+...|.........+..+++..+..+
T Consensus 62 ~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l 98 (141)
T TIGR02473 62 ELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERL 98 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888777766666666666655543
No 317
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=32.66 E-value=1.3e+02 Score=19.92 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
.+|..+=.+|-.+..++..+..++..++.
T Consensus 6 ~~ID~ID~~lv~Ll~~R~~~~~~i~~~K~ 34 (83)
T TIGR01797 6 EKISAIDEKLLKLLAERRELAFEVGKSKL 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555544443
No 318
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=32.57 E-value=55 Score=23.43 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhh
Q psy20 76 LVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l~~~ 97 (147)
|.+.||++|-.|..||+.|.+-
T Consensus 80 k~~~LeEENNlLklKievLLDM 101 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999887654
No 319
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=32.55 E-value=69 Score=27.26 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 109 SEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 109 ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
....|.+|+..|..+..+-..|+..+......+.++.
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 3667778888888888887777777777777666664
No 320
>KOG0933|consensus
Probab=32.44 E-value=4.2e+02 Score=26.38 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy20 135 RRLLDELL 142 (147)
Q Consensus 135 ~~l~~~~e 142 (147)
+.++.++.
T Consensus 867 ~~~~~el~ 874 (1174)
T KOG0933|consen 867 KKAQAELK 874 (1174)
T ss_pred HHHHHHHH
Confidence 33333333
No 321
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=32.42 E-value=73 Score=20.40 Aligned_cols=18 Identities=6% Similarity=0.281 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSA 129 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~ 129 (147)
.|..|..+|+.+...+..
T Consensus 22 tL~~LH~EIe~Lq~~~~d 39 (60)
T PF14916_consen 22 TLKGLHAEIERLQKRNKD 39 (60)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 344455555444444433
No 322
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=32.37 E-value=1.5e+02 Score=25.38 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHH
Q psy20 78 QKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKAL 120 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v 120 (147)
-.||.+-..+++++..++...+++.+.+..+ .+.++.+|+++
T Consensus 226 s~Le~eL~~iqaqL~tvks~m~~~nPqi~~L-karieSlrkql 267 (372)
T COG3524 226 SKLEDELIVIQAQLDTVKSVMNPENPQIPGL-KARIESLRKQL 267 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchhH-HHHHHHHHHHH
Confidence 3455555555555555555544444455444 44555555554
No 323
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=32.21 E-value=1.5e+02 Score=20.28 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 107 ~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.....+|.-||.+|+..- +.++..+|...++.++..|
T Consensus 27 ~~L~eEI~~Lr~qve~nP-evtr~A~EN~rL~ee~rrl 63 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNP-EVTRFAMENIRLREELRRL 63 (86)
T ss_pred HHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHH
Confidence 344667888888776533 2344444444444444433
No 324
>PLN02678 seryl-tRNA synthetase
Probab=32.01 E-value=3.6e+02 Score=23.84 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=39.1
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCC--cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 68 DRLAQYIELVQKLQNDKASLEYSLYSIEESHTT--EFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 68 dRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~--~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
|.+..+-++-|.|-.+-..|..+.+.+...-+. ..........+++..++.+|..+..+...++.++..+...
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444443222110 1112223345577788888888888888888887765543
No 325
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.67 E-value=2.1e+02 Score=20.94 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=28.8
Q ss_pred Hhhhhh-hHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 74 IELVQK-LQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 74 IekVR~-LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
++.|-. |....+.|..+|+.+-.+. ... .+.....+.+|.++..+-..+.-+++.++..+..|
T Consensus 52 l~~vs~~l~~tKkhLsqRId~vd~kl-------De~-~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 52 LEQVSESLSSTKKHLSQRIDRVDDKL-------DEQ-KEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH-------HHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344433 4444555555555443322 111 22233444455555555555555555555554444
No 326
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.65 E-value=1.6e+02 Score=19.60 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
+..|..|-..|-+....-.+++.+++.+-..+.++
T Consensus 21 E~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 21 EQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666677666666667777776666665554
No 327
>PLN03237 DNA topoisomerase 2; Provisional
Probab=31.57 E-value=3.2e+02 Score=28.05 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=47.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
|+|..|..+-..++.++..|+.. ....+|...|..+...++....+-+..+.++..++..
T Consensus 1126 E~~~kL~~~~~~k~~el~~l~~~------t~~~lW~~DLd~f~~~~~~~~~~~~~~~~~~~~~~~~ 1185 (1465)
T PLN03237 1126 EKVQELCADRDKLNIEVEDLKKT------TPKSLWLKDLDALEKELDKLDKEDAKAEEAREKLQRA 1185 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888654 2367788889999998888777777766666666643
No 328
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=31.43 E-value=45 Score=24.60 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhhHHHHHhhhh
Q psy20 58 QEKNELKNLNDRLAQYIELVQ 78 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR 78 (147)
-+....+.||..++.||+.+|
T Consensus 105 p~~~KC~~Lnr~l~pFI~~~r 125 (128)
T TIGR01004 105 PEATKCSEFNRRLTPFIDALR 125 (128)
T ss_pred cchHHHHHHHHHHHHHHHHHh
Confidence 356678899999999999875
No 329
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.41 E-value=1.7e+02 Score=19.96 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=14.0
Q ss_pred HHHHHHhhHHHHHhhhhhh
Q psy20 62 ELKNLNDRLAQYIELVQKL 80 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~L 80 (147)
++..|+++++.|-+++-..
T Consensus 6 eId~lEekl~~cr~~le~v 24 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAV 24 (85)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 6778888888887665544
No 330
>KOG1103|consensus
Probab=31.36 E-value=3.6e+02 Score=23.65 Aligned_cols=67 Identities=25% Similarity=0.261 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHhhc---CCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 80 LQNDKASLEYSLYSIEESH---TTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 80 LE~~N~~Le~ki~~l~~~~---~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
+|...++|-.++..-++.+ ..+...+..+.+++-+.|.+||+=-..++.+.+++.+++...+++-|.
T Consensus 112 aE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~ 181 (561)
T KOG1103|consen 112 AEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKK 181 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333322 223445667889999999999988888888888888888877776543
No 331
>KOG2391|consensus
Probab=31.32 E-value=3.5e+02 Score=23.40 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=15.7
Q ss_pred HHHHhhhhh-hHHHHHHHHHHHHHHHhh
Q psy20 71 AQYIELVQK-LQNDKASLEYSLYSIEES 97 (147)
Q Consensus 71 A~YIekVR~-LE~~N~~Le~ki~~l~~~ 97 (147)
..|.+|+|. .|.+-..+..++..++..
T Consensus 213 sa~~eklR~r~eeeme~~~aeq~slkRt 240 (365)
T KOG2391|consen 213 SAVREKLRRRREEEMERLQAEQESLKRT 240 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677766 555555556665555543
No 332
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=31.17 E-value=2e+02 Score=20.65 Aligned_cols=81 Identities=9% Similarity=0.030 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 59 EKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 59 EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
.+..|...+..+...-++...|+.--......+..... .+ -.......|...|..|...|.........+..+++..+
T Consensus 21 a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~-~g-~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r 98 (147)
T PRK05689 21 AALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGS-AG-MTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNAR 98 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555665566666665444444444433211 12 13345567788888888888777777777776666655
Q ss_pred HHH
Q psy20 139 DEL 141 (147)
Q Consensus 139 ~~~ 141 (147)
..+
T Consensus 99 ~~~ 101 (147)
T PRK05689 99 KYW 101 (147)
T ss_pred HHH
Confidence 543
No 333
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=31.01 E-value=2.9e+02 Score=25.08 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=33.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 76 LVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
++..||.+-..||.++.++...-. ...++..|...+..+-.++.++..+...+..+...
T Consensus 569 ~~~~~e~~i~~le~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 627 (635)
T PRK11147 569 ELEQLPQLLEDLEAEIEALQAQVA--DADFFSQPHEQTQKVLADLADAEQELEVAFERWEE 627 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366688888888888888776653 22222223334555555555555554444444433
No 334
>KOG3119|consensus
Probab=30.83 E-value=52 Score=26.92 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=13.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh
Q psy20 75 ELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.||..||.+|..|..++..++.
T Consensus 222 ~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 222 HRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666655543
No 335
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.78 E-value=3.3e+02 Score=24.05 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
...+.++..++.++..+...|+.++..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566777777777777777777776654
No 336
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=30.77 E-value=4.8e+02 Score=24.90 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy20 126 SKSALAIEKR 135 (147)
Q Consensus 126 ek~~l~le~~ 135 (147)
++.++..+++
T Consensus 122 E~er~~~El~ 131 (775)
T PF10174_consen 122 ERERLQRELE 131 (775)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 337
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=30.67 E-value=2.2e+02 Score=20.87 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=21.6
Q ss_pred HHHHHHHHhhH-HHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 60 KNELKNLNDRL-AQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 60 Ke~mq~LNdRL-A~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
+..+..+|-++ +. ....|++.|..|..++..+..
T Consensus 14 ~a~~~e~e~~~~~~---~~~~l~~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 14 AAKILELETKLKSQ---AESSLEQENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666 33 335677788888877766665
No 338
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.41 E-value=2.2e+02 Score=23.07 Aligned_cols=19 Identities=11% Similarity=0.352 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSAL 130 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l 130 (147)
+|.+||-+|+.+..+...+
T Consensus 69 ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 69 DIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 3444444444444443333
No 339
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=30.41 E-value=2.1e+02 Score=20.61 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=44.8
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
+..|...+..+..--.++..|+..-......+..-.. .+ -....+..|...|..|...|.........+..+++..+.
T Consensus 22 ~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~-~g-~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~ 99 (146)
T PRK07720 22 LGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQ-SG-LSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQ 99 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566665555555555443221 12 134556678888888888887766666665555554444
Q ss_pred H
Q psy20 140 E 140 (147)
Q Consensus 140 ~ 140 (147)
.
T Consensus 100 ~ 100 (146)
T PRK07720 100 D 100 (146)
T ss_pred H
Confidence 3
No 340
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.34 E-value=4.1e+02 Score=23.96 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 80 LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
.+..|..+..+|..+...-.. -..-+......+..+...|..+...+..|..+++.+..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~-E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEK-EVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888777665431 22233444556667777777777777777777766553
No 341
>KOG3977|consensus
Probab=30.08 E-value=2.8e+02 Score=22.05 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=33.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcC
Q psy20 103 KKVKAASEKEIEDIRKALDRESSSKSAL-------AIEKRRLLDELLDLKNK 147 (147)
Q Consensus 103 ~~~~~~ye~ei~~lR~~v~~l~~ek~~l-------~le~~~l~~~~ed~r~K 147 (147)
-.+....+.--.+|.+.|+.+.-++--| ..||+.|...+.|||.|
T Consensus 87 l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~~EIndLtikvnDLRGK 138 (221)
T KOG3977|consen 87 LDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTETEINDLTIKVNDLRGK 138 (221)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhhhhHHHHHHHHHHhccc
Confidence 3445556666678888888888776555 45888888899998865
No 342
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.01 E-value=1.8e+02 Score=19.86 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=45.9
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcc--cCchH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEF--KKVKA-----ASEKEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~--~~~~~-----~ye~ei~~lR~~v~~l~~ek~~l~l 132 (147)
-.+++.|...+..+......|+.+-...+.=+.++..-..... -.++. .....+..+...+..+..+...+..
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~ 84 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLER 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777666666666554321000 11111 1222334455555555555555555
Q ss_pred HHHHHHHHHHhhh
Q psy20 133 EKRRLLDELLDLK 145 (147)
Q Consensus 133 e~~~l~~~~ed~r 145 (147)
+++.+..++.+++
T Consensus 85 ~~~~l~~~~~elk 97 (105)
T cd00632 85 QEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 343
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.88 E-value=3e+02 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=13.8
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 63 LKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
+..|+.+|.. ++++-...|.+++.++.+.
T Consensus 269 ~~fL~~qL~~-------l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPE-------VRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHc
Confidence 4445555444 3444444455555555544
No 344
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=29.82 E-value=1.1e+02 Score=21.62 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=28.7
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.-|+-||.|=..-++-|+.+|..-+.|+.++..+..
T Consensus 54 qsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~ 89 (101)
T PF12308_consen 54 QSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVED 89 (101)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457778888888888888888888888888876544
No 345
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.76 E-value=3.2e+02 Score=22.49 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=37.2
Q ss_pred HHHHHHHHhhHHHHH--------hhhhhhHHHHHHHHHHHHHHHhhcCCc-------ccCchHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYI--------ELVQKLQNDKASLEYSLYSIEESHTTE-------FKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 60 Ke~mq~LNdRLA~YI--------ekVR~LE~~N~~Le~ki~~l~~~~~~~-------~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
...|+.+|..|+.-| .+||.|=++-..+..-+..+..+.... -..+....+..+..|.++++.+.
T Consensus 15 ~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~ 94 (258)
T PF15397_consen 15 EDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLD 94 (258)
T ss_pred HHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455667777776555 467776555555555555444332210 11223344555666666666555
Q ss_pred HHHHHHH
Q psy20 125 SSKSALA 131 (147)
Q Consensus 125 ~ek~~l~ 131 (147)
.......
T Consensus 95 akI~k~~ 101 (258)
T PF15397_consen 95 AKIQKTQ 101 (258)
T ss_pred HHHHHHH
Confidence 4444333
No 346
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=29.72 E-value=2.7e+02 Score=23.76 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=21.4
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
.+|+.|+.-.+.|...+..||+.-..+...+..|.
T Consensus 322 ~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~ 356 (388)
T PF04912_consen 322 KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWE 356 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666665555443
No 347
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.66 E-value=4.1e+02 Score=23.78 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=13.1
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 63 LKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
++.+-.-|..|.+.+-+=+.+-..++.++..
T Consensus 282 l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~ 312 (563)
T TIGR00634 282 VEEATRELQNYLDELEFDPERLNEIEERLAQ 312 (563)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444444445555443333333344444443
No 348
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.63 E-value=1.7e+02 Score=20.70 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSLY 92 (147)
Q Consensus 80 LE~~N~~Le~ki~ 92 (147)
|-.++..|+.++.
T Consensus 78 L~~~~~~l~~~~~ 90 (118)
T PF13815_consen 78 LSSQLEQLEERLQ 90 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 349
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=29.60 E-value=1.8e+02 Score=19.63 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
...+..|+.+|..+..+...+..+++-+...+.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777766665544
No 350
>KOG0709|consensus
Probab=29.55 E-value=4.2e+02 Score=23.79 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=55.6
Q ss_pred hhHhHHHHHHH----HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC--CcccCch---HHHHHHHHHHHHHHHHHHH
Q psy20 55 SRRQEKNELKN----LNDRLAQYIELVQKLQNDKASLEYSLYSIEESHT--TEFKKVK---AASEKEIEDIRKALDRESS 125 (147)
Q Consensus 55 ~r~~EKe~mq~----LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~--~~~~~~~---~~ye~ei~~lR~~v~~l~~ 125 (147)
.-.+||..|.- ||+.|...=-.=|.|-.-+++...|+.....++. .....+. ..|.++=.+|.++|..+..
T Consensus 221 LteeEkrLL~kEG~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~ 300 (472)
T KOG0709|consen 221 LTEEEKRLLTKEGYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL 300 (472)
T ss_pred ccHHHHHHHHhccCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh
Confidence 35677777754 6776665544445666666666665543222221 1122222 2344455689999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy20 126 SKSALAIEKRRLLDELLD 143 (147)
Q Consensus 126 ek~~l~le~~~l~~~~ed 143 (147)
.|..|..++..++..+-.
T Consensus 301 ~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 301 SNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred ccHHHHHHHHHHHHHHhh
Confidence 999999999998876644
No 351
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=29.44 E-value=1.8e+02 Score=23.95 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKS 128 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~ 128 (147)
.++++.+...++.+..|..
T Consensus 52 ~k~~~~l~~~i~~L~~E~~ 70 (298)
T PF11262_consen 52 KKEKERLKNLIDKLPEELK 70 (298)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555443
No 352
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=29.39 E-value=4.3e+02 Score=24.09 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 108 ASEKEIEDIRKALDRESSSKSALAIEK 134 (147)
Q Consensus 108 ~ye~ei~~lR~~v~~l~~ek~~l~le~ 134 (147)
...+.+.+++..|+.+-.+-..+--.+
T Consensus 409 e~~~~l~~v~eKVd~LpqqI~~vs~Kc 435 (531)
T PF15450_consen 409 EMEKHLKEVQEKVDSLPQQIEEVSDKC 435 (531)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334455555555555554443333333
No 353
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=28.90 E-value=4.2e+02 Score=23.66 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRE 123 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l 123 (147)
.|+..++=...+-..|..|..+-......+..++.+.......+ .....++..++..|...
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-SSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhHHHHHHHHHHHHHHH
Confidence 33333444444444455554444444444444444332111122 12244555555555443
No 354
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=28.82 E-value=2.9e+02 Score=25.38 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 109 SEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 109 ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
|-+|++..-..|++++...-.+-+|...++.+++|+
T Consensus 682 qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ 717 (790)
T PF07794_consen 682 QAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDL 717 (790)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHH
Confidence 334555555566666555555555555666665554
No 355
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.75 E-value=1.1e+02 Score=24.83 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
.|+.+.-+|+.+......+..++|...
T Consensus 76 ~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 76 QIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666777777654
No 356
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.75 E-value=3.6e+02 Score=22.85 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=14.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 70 LAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 70 LA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
|+.+-++.+.|..+...|..++.++
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555555443
No 357
>KOG0933|consensus
Probab=28.57 E-value=6e+02 Score=25.33 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
+++|..+.+.+++...+-.+-+.+...++.+.++
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~ 826 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEE 826 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433334444444444443
No 358
>KOG1937|consensus
Probab=28.48 E-value=4.4e+02 Score=23.74 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=32.2
Q ss_pred HhhHHHHH---hhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 67 NDRLAQYI---ELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 67 NdRLA~YI---ekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
|.+++.|. .+.+.++.+|..|| ++..+++.-. +.-.+.. +++..|..+|.........+-.++++
T Consensus 251 kqh~v~~~ales~~sq~~e~~selE-~llklkerl~-e~l~dge---ayLaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 251 KQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLI-EALDDGE---AYLAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHH-HhcCChH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666664 46667777888877 4444544432 1223333 33444444444444443333333333
No 359
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.30 E-value=1.4e+02 Score=17.81 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
.....|+..-+.+..|+..|..++..+...+
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445667777778888888888887776654
No 360
>KOG2398|consensus
Probab=28.30 E-value=3.5e+02 Score=25.02 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=12.3
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQND 83 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~ 83 (147)
+..+.++.++..|+.++...|.-
T Consensus 109 ~~~~~~~~~~~~~~~~~~e~e~~ 131 (611)
T KOG2398|consen 109 KDTYEVLCAKSNYLHRCQEKESL 131 (611)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 34455555566666655555443
No 361
>KOG4673|consensus
Probab=28.28 E-value=2.8e+02 Score=26.47 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=36.1
Q ss_pred HHHHHhhHHHHHhhhhh-hHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 63 LKNLNDRLAQYIELVQK-LQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~-LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
|-+|.-.+++ +++.|. |-.+--+|..+...++++.. ...-..+++++|++.-+.+..=-..-.-+...++.++
T Consensus 868 lthlq~e~~~-le~~Rs~laeElvklT~e~e~l~ek~~-----~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl 941 (961)
T KOG4673|consen 868 LTHLQTELAS-LESIRSSLAEELVKLTAECEKLREKAD-----RVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDL 941 (961)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhH
Confidence 3344444443 233343 44445555666666665543 2233356677777766554432222222334444444
Q ss_pred Hhhh
Q psy20 142 LDLK 145 (147)
Q Consensus 142 ed~r 145 (147)
.|+|
T Consensus 942 ~dlK 945 (961)
T KOG4673|consen 942 VDLK 945 (961)
T ss_pred HHHH
Confidence 4443
No 362
>KOG1003|consensus
Probab=28.05 E-value=3.1e+02 Score=21.82 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=33.6
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 63 LKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
+..+-+-|-+|--+.-.+++.--..+.+|..+..+-. +...-....+..+..|...+|++.............++.
T Consensus 118 ~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk-EaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~ 193 (205)
T KOG1003|consen 118 LRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK-EAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKK 193 (205)
T ss_pred HHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHH
Confidence 3334444444444555555555566666666555432 111112233444444444444444443333333333333
No 363
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.02 E-value=86 Score=26.31 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
+..|..|+.+.+....++..|+.++...
T Consensus 248 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 275 (344)
T PF12777_consen 248 EEKLAALQKEYEEAQKEKQELEEEIEET 275 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444433
No 364
>KOG0249|consensus
Probab=27.92 E-value=3.6e+02 Score=25.83 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=15.7
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 71 AQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 71 A~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
++-+++.+.|+.++..|.+++.-...
T Consensus 159 ~~~eer~~kl~~~~qe~naeL~rarq 184 (916)
T KOG0249|consen 159 GNIEERTRKLEEQLEELNAELQRARQ 184 (916)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777766666654433
No 365
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=27.52 E-value=4e+02 Score=24.55 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=35.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 103 KKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 103 ~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
..+-..|...|..++..|..+...+..|+++..|.+.-.+++.
T Consensus 50 e~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~ 92 (701)
T PF09763_consen 50 ESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELE 92 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999988777666553
No 366
>KOG4593|consensus
Probab=27.32 E-value=1.5e+02 Score=27.89 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=38.1
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
-..|.+-++.-+.+|--|++++-.||-+|..|.+++.-|..-.
T Consensus 280 LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~ 322 (716)
T KOG4593|consen 280 LQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERAD 322 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999999999999988776543
No 367
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.31 E-value=1.9e+02 Score=19.10 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 109 SEKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 109 ye~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
|..-+.+++..|..+..--.+++-..+++
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777766665555555544443
No 368
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.20 E-value=1.7e+02 Score=24.20 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy20 85 ASLEYSLYS 93 (147)
Q Consensus 85 ~~Le~ki~~ 93 (147)
..|..+|..
T Consensus 55 ~~L~~qi~~ 63 (265)
T COG3883 55 ESLDNQIEE 63 (265)
T ss_pred HHHHHHHHH
Confidence 333333333
No 369
>PRK01156 chromosome segregation protein; Provisional
Probab=26.95 E-value=5.4e+02 Score=24.26 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
..++..+..+..+.+.+..++..+..
T Consensus 684 ~~l~~~l~~l~~~~~~l~~~i~~l~~ 709 (895)
T PRK01156 684 KKSRKALDDAKANRARLESTIEILRT 709 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443333333
No 370
>PRK04863 mukB cell division protein MukB; Provisional
Probab=26.87 E-value=7e+02 Score=25.73 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=5.9
Q ss_pred HHhhHHHHHhhhhhhH
Q psy20 66 LNDRLAQYIELVQKLQ 81 (147)
Q Consensus 66 LNdRLA~YIekVR~LE 81 (147)
+++.+...-.++..|+
T Consensus 312 I~diL~ELe~rL~kLE 327 (1486)
T PRK04863 312 MARELAELNEAESDLE 327 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 371
>KOG0946|consensus
Probab=26.84 E-value=2.6e+02 Score=27.08 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
+++.+++...++..+++.++.++.
T Consensus 672 ~~e~lkQ~~~~l~~e~eeL~~~vq 695 (970)
T KOG0946|consen 672 QIENLKQMEKELQVENEELEEEVQ 695 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665555443
No 372
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.57 E-value=3.7e+02 Score=22.21 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=37.2
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc----C--CcccCchHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH----T--TEFKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~----~--~~~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
|+.++.+.+.+...-..+-.|+.....|+.||.--+..- . ..-..+++.|..+.+.+..++..+-
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666677777764322111 0 0134556777777777766665543
No 373
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=26.47 E-value=3.9e+02 Score=22.45 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSAL 130 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l 130 (147)
.+..+|...+.+..+-..+
T Consensus 201 ~~De~Rkeade~he~~ve~ 219 (294)
T COG1340 201 EADELRKEADELHEEFVEL 219 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333
No 374
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.40 E-value=2.1e+02 Score=19.34 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhhHHHHHhhhh----hhHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQ----KLQNDKASLEYSLYSI 94 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR----~LE~~N~~Le~ki~~l 94 (147)
-|-++++.-|+.|+.-++-++ .|+++|..|..+-..|
T Consensus 25 mEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 25 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344455555555554333221 2444554444444333
No 375
>KOG0018|consensus
Probab=26.22 E-value=3.3e+02 Score=27.06 Aligned_cols=85 Identities=25% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhhhhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 51 PTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSAL 130 (147)
Q Consensus 51 ~~~~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l 130 (147)
.+. .+.-|-..+ +..|| .+-..+|.+-..|+.+|...++ .+...-...++..++++...++.+..+...+
T Consensus 764 gv~-ir~Yee~~~---~~~~a---~k~~ef~~q~~~l~~~l~fe~~---~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~ 833 (1141)
T KOG0018|consen 764 GVR-IREYEEREL---QQEFA---KKRLEFENQKAKLENQLDFEKQ---KDTQRRVERWERSVEDLEKEIEGLKKDEEAA 833 (1141)
T ss_pred Cee-eehHHHHHH---HHHHH---HHHHHHHHHHHHHhhhhhheec---ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhcC
Q psy20 131 AIEKRRLLDELLDLKNK 147 (147)
Q Consensus 131 ~le~~~l~~~~ed~r~K 147 (147)
+..++.. .+++. |.|
T Consensus 834 ~k~i~e~-~~~e~-k~k 848 (1141)
T KOG0018|consen 834 EKIIAEI-EELEK-KNK 848 (1141)
T ss_pred HHHHhhH-HHHHH-HHH
No 376
>KOG0964|consensus
Probab=26.18 E-value=5.5e+02 Score=25.58 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=7.0
Q ss_pred HHHHHHHhhHHHHHh
Q psy20 61 NELKNLNDRLAQYIE 75 (147)
Q Consensus 61 e~mq~LNdRLA~YIe 75 (147)
.++..|+..|-..++
T Consensus 272 ~~i~ele~~l~~l~~ 286 (1200)
T KOG0964|consen 272 CEIKELENKLTNLRE 286 (1200)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344445555544444
No 377
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=26.17 E-value=58 Score=22.09 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=17.1
Q ss_pred HHHHHHhhHHHHHhhhhhhH
Q psy20 62 ELKNLNDRLAQYIELVQKLQ 81 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE 81 (147)
.+-.|+.+|+.+|++|+.=|
T Consensus 6 ~i~e~k~~~S~lL~rV~aGE 25 (84)
T COG4118 6 NIRELRTHLSELLRRVRAGE 25 (84)
T ss_pred cHHHHHHHHHHHHHHHhCCC
Confidence 45689999999999999865
No 378
>PF10139 Virul_Fac: Putative bacterial virulence factor; InterPro: IPR017030 This group represents a virulence effector protein, SrfC type.
Probab=26.17 E-value=1.9e+02 Score=27.85 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=30.8
Q ss_pred HHHHHHHh----hHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 61 NELKNLND----RLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 61 e~mq~LNd----RLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
.+|..||| ||+.|+.+|-.-|..-..+..++.++...-
T Consensus 529 damLaLNdgGv~rL~e~L~~v~~pe~K~~RI~eqL~el~~el 570 (854)
T PF10139_consen 529 DAMLALNDGGVQRLAEYLSQVCNPELKQERIAEQLEELQREL 570 (854)
T ss_pred HHHHhhccccHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 47999997 799999999888888888888877766543
No 379
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.12 E-value=4.3e+02 Score=22.88 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 81 QNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 81 E~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
+++-...+.++..++.+.+-............+.++..++..+..+...++..++.++..
T Consensus 174 ~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 174 EKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred HHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555554443311112223445667777777766666666666655555543
No 380
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=25.92 E-value=96 Score=19.26 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~ 95 (147)
.++..|+.+|+.|..++.-.+
T Consensus 29 ~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 29 KRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566778999999999887554
No 381
>KOG0979|consensus
Probab=25.92 E-value=5.3e+02 Score=25.58 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=46.7
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHH------HHHHHHHHHHHHHHHHHHHH
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAAS------EKEIEDIRKALDRESSSKSA 129 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~y------e~ei~~lR~~v~~l~~ek~~ 129 (147)
...=|+++..|+--+..+-++-..||.+-..+..++.................+ ++++..+...++.+.....+
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~ 336 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEK 336 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777777777777777777777666666666553332211111222222 22334444444444444444
Q ss_pred HHHHHHHHHHHHHhh
Q psy20 130 LAIEKRRLLDELLDL 144 (147)
Q Consensus 130 l~le~~~l~~~~ed~ 144 (147)
.+-.+.++...+.+.
T Consensus 337 rq~~i~~~~k~i~~~ 351 (1072)
T KOG0979|consen 337 RQKRIEKAKKMILDA 351 (1072)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555544
No 382
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=25.83 E-value=5.2e+02 Score=23.72 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=38.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
-.||.+|.+-..|...+..+..... ...--++.....++.+..+|.++..+...+.-.+..++
T Consensus 347 ~~vr~~e~eL~el~~~~~~i~~~~~-~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 347 GSVRKFEKELKELESVLDEILENIE-AQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556666666677766666665544 23334555566777777777777776666655554444
No 383
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=25.67 E-value=23 Score=33.59 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIE-KRRLLDELL 142 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le-~~~l~~~~e 142 (147)
+.+..++..+|.|+..+.++-++ +.+....++
T Consensus 568 ~~l~kmk~ll~iL~~p~~r~pl~tL~kce~~l~ 600 (799)
T PF09606_consen 568 KDLSKMKSLLDILSNPSKRCPLETLQKCEIVLE 600 (799)
T ss_dssp ---------------------------------
T ss_pred hHHHhHHHHHHHhcCCccCCchHHHHHHHHHHH
Confidence 34455555566555555444333 344444444
No 384
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.60 E-value=2.9e+02 Score=20.65 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=18.2
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHT 99 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~ 99 (147)
.+|......++.+=+.+..+..+...+..+...++...+
T Consensus 98 ~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 98 QELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444444444444444555555555544433
No 385
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.57 E-value=2.6e+02 Score=20.92 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy20 107 AASEKEIEDIRKALDR 122 (147)
Q Consensus 107 ~~ye~ei~~lR~~v~~ 122 (147)
..|..+..+||++|..
T Consensus 57 ~~f~~~t~~LRqqL~a 72 (143)
T PRK11546 57 NDFYAQTSALRQQLVS 72 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555543
No 386
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.45 E-value=3.2e+02 Score=21.08 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=36.7
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
.|.+|+|.|...+--+.+.|.+-.+--.+. .+ .. ....++..++..|++-..+|..+.
T Consensus 2 ~~kt~~d~f~~~LrD~y~aEkq~~kaL~km--a~--~~-~~~~Lka~~E~Hl~ET~~qi~rLe 59 (167)
T COG3685 2 AMKTLEDLFIDTLRDIYAAEKQILKALPKM--AR--RA-QYPELKAAIEKHLEETKGQIERLE 59 (167)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--Hh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999988888886654322221 11 11 245667777777777666665443
No 387
>PRK10869 recombination and repair protein; Provisional
Probab=25.36 E-value=5e+02 Score=23.37 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=16.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSL 91 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki 91 (147)
...++.+.+.|-.|++.+-+=+.+-..++..+
T Consensus 274 ~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl 305 (553)
T PRK10869 274 LIQIQEASDELRHYLDRLDLDPNRLAELEQRL 305 (553)
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 34455566666666665544333333344333
No 388
>PHA02682 ORF080 virion core protein; Provisional
Probab=24.88 E-value=1.6e+02 Score=23.73 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=32.5
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 68 DRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 68 dRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
.-|+..-|-||.|-.+--.|..+|+..+.. -...|.|||..+..
T Consensus 215 keladiadsvrdl~aeS~~LtrDIE~AKst-----------Tq~AIdDLRrLl~~ 258 (280)
T PHA02682 215 KELADIADSVRDLNAESLSLTRDIENAKST-----------TQAAIDDLRRLLTG 258 (280)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHhh-----------HHHHHHHHHHHHhc
Confidence 447888899999999988898888765432 24567788877743
No 389
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.77 E-value=4.2e+02 Score=22.26 Aligned_cols=77 Identities=13% Similarity=0.231 Sum_probs=51.6
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccC---------------chHH-H-HHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKK---------------VKAA-S-EKEIEDIRKALDRES 124 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~---------------~~~~-y-e~ei~~lR~~v~~l~ 124 (147)
++.+|...|.+.-..+..||++.+.+..++.-.+......... .-.. | ....++|+.....-.
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkev 175 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEV 175 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHH
Confidence 4667888888888888899999999988886544332211100 0111 1 245567887777777
Q ss_pred HHHHHHHHHHHHHH
Q psy20 125 SSKSALAIEKRRLL 138 (147)
Q Consensus 125 ~ek~~l~le~~~l~ 138 (147)
.++.+|+.|+..++
T Consensus 176 eerkrle~e~k~lq 189 (307)
T PF10481_consen 176 EERKRLEAEVKALQ 189 (307)
T ss_pred HHHhhHHHHHHHHh
Confidence 78888888887765
No 390
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.76 E-value=1.9e+02 Score=18.25 Aligned_cols=25 Identities=4% Similarity=0.146 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
.+..+|..|.....|-++.--.|||
T Consensus 25 dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 25 DVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555554444444444444444
No 391
>KOG3270|consensus
Probab=24.73 E-value=3.9e+02 Score=21.85 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
..+++|+..++.+.+++..++..+..+...+.+
T Consensus 115 ~~~e~L~~~~e~l~r~nl~~~p~l~el~~~~~~ 147 (244)
T KOG3270|consen 115 KIQEKLVKSVEKLARENLEKEPALVELRNQASD 147 (244)
T ss_pred HHHHHHHHHHHHhcccchhhccchHHHHhhhhh
Confidence 667789999999988888888777766666554
No 392
>KOG4571|consensus
Probab=24.62 E-value=2.2e+02 Score=23.87 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy20 110 EKEIEDIRKAL 120 (147)
Q Consensus 110 e~ei~~lR~~v 120 (147)
+.||+-||+.|
T Consensus 275 erEI~ylKqli 285 (294)
T KOG4571|consen 275 EREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 393
>PHA02682 ORF080 virion core protein; Provisional
Probab=24.44 E-value=2.4e+02 Score=22.69 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=29.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhh
Q psy20 103 KKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLL----DELLDLK 145 (147)
Q Consensus 103 ~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~----~~~ed~r 145 (147)
..++....+||.+.-.-|.++..|-..|-.+|.+.+ .+++|||
T Consensus 207 ~~~k~~ikkeladiadsvrdl~aeS~~LtrDIE~AKstTq~AIdDLR 253 (280)
T PHA02682 207 NDDKDLIKKELADIADSVRDLNAESLSLTRDIENAKSTTQAAIDDLR 253 (280)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHH
Confidence 445566677788877778888777777766666554 4577765
No 394
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=24.30 E-value=77 Score=23.12 Aligned_cols=20 Identities=25% Similarity=0.637 Sum_probs=16.9
Q ss_pred HHHHHHHhhHHHHHhhhhhh
Q psy20 61 NELKNLNDRLAQYIELVQKL 80 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~L 80 (147)
++|+.+.+||..|+++.+.+
T Consensus 6 ~el~~vq~RL~Pflery~~i 25 (120)
T PF12057_consen 6 QELRRVQERLQPFLERYHEI 25 (120)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 57889999999999986654
No 395
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.22 E-value=5.2e+02 Score=23.17 Aligned_cols=91 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc---ccCchHHHHHHHHHHHHHHHHHHHHH------
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE---FKKVKAASEKEIEDIRKALDRESSSK------ 127 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~---~~~~~~~ye~ei~~lR~~v~~l~~ek------ 127 (147)
..-+++++.++..+...-.....++.++..|+..+...+...... -.........+.+.|-..|++-...+
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~ 135 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNR 135 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q psy20 128 SALAIEKRRLLDELLDLKNK 147 (147)
Q Consensus 128 ~~l~le~~~l~~~~ed~r~K 147 (147)
..|..-+.=++..+++|+.+
T Consensus 136 ~~l~~ll~Pl~e~l~~f~~~ 155 (475)
T PRK10361 136 QSLNSLLSPLREQLDGFRRQ 155 (475)
T ss_pred HHHHHHHhhHHHHHHHHHHH
No 396
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.11 E-value=1.3e+02 Score=22.51 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=23.3
Q ss_pred HHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 65 NLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 65 ~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
+|-+-|..+.+.++.++.++..++.++..+....
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567777777777777777777777665543
No 397
>PRK14127 cell division protein GpsB; Provisional
Probab=23.89 E-value=2.7e+02 Score=19.79 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy20 122 RESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 122 ~l~~ek~~l~le~~~l~~~~ed 143 (147)
.+..++..|.-++..+...+++
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 398
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=23.86 E-value=3.9e+02 Score=23.56 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
-+.-++.-+++|+. .||.+...++.++..+.. ......+...++.+..++..+..-..-|+..+..
T Consensus 160 p~~vQ~~L~~~Rl~-------~L~~qi~~~~~~l~~~~~------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~ 225 (475)
T PF10359_consen 160 PRRVQIELIQERLD-------ELEEQIEKHEEKLGELEL------NPDDPELKSDIEELERHISSLKERIEFLENMLED 225 (475)
T ss_pred cchHHHHHHHHHHH-------HHHHHHHHHHHhhhcccc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666776664 455555555555544332 1122333444555555554444444444444433
No 399
>KOG0976|consensus
Probab=23.81 E-value=6.4e+02 Score=24.77 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=7.6
Q ss_pred hhhhhhHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYS 90 (147)
Q Consensus 75 ekVR~LE~~N~~Le~k 90 (147)
++.+.|+.-|..|..+
T Consensus 270 E~m~qlk~kns~L~~E 285 (1265)
T KOG0976|consen 270 EKMRQLKAKNSVLGDE 285 (1265)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4445555555444443
No 400
>KOG4603|consensus
Probab=23.73 E-value=3.6e+02 Score=21.13 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q psy20 78 QKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~ 96 (147)
..|...|..|+.+.+.+..
T Consensus 82 ~~ld~~i~~l~ek~q~l~~ 100 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQ 100 (201)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3455556666666665544
No 401
>PRK00295 hypothetical protein; Provisional
Probab=23.58 E-value=2.1e+02 Score=18.38 Aligned_cols=7 Identities=29% Similarity=0.226 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy20 85 ASLEYSL 91 (147)
Q Consensus 85 ~~Le~ki 91 (147)
..||.++
T Consensus 8 ~~LE~kl 14 (68)
T PRK00295 8 TELESRQ 14 (68)
T ss_pred HHHHHHH
Confidence 3444444
No 402
>PRK02793 phi X174 lysis protein; Provisional
Probab=23.57 E-value=2.2e+02 Score=18.53 Aligned_cols=9 Identities=44% Similarity=0.361 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy20 83 DKASLEYSL 91 (147)
Q Consensus 83 ~N~~Le~ki 91 (147)
.-..||.++
T Consensus 9 Ri~~LE~~l 17 (72)
T PRK02793 9 RLAELESRL 17 (72)
T ss_pred HHHHHHHHH
Confidence 333444444
No 403
>KOG1850|consensus
Probab=23.51 E-value=4.8e+02 Score=22.49 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=50.2
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKK------VKAASEKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~------~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
+|+--|.-|..|-+..-.+-...+.||.+--.|+.++...... -...|...+..+..+|..+..=-..|+.+..
T Consensus 237 tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ern 316 (391)
T KOG1850|consen 237 TLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERN 316 (391)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566788888886665556666667777777777665321111 1345556666666666666555555666666
Q ss_pred HHHHHHHhh
Q psy20 136 RLLDELLDL 144 (147)
Q Consensus 136 ~l~~~~ed~ 144 (147)
.+...++++
T Consensus 317 el~~~~~~~ 325 (391)
T KOG1850|consen 317 ELNKKLEDL 325 (391)
T ss_pred cHHHHHHHH
Confidence 665555554
No 404
>PRK11519 tyrosine kinase; Provisional
Probab=23.39 E-value=5.2e+02 Score=23.98 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=6.2
Q ss_pred HHHHHHhhHHHHH
Q psy20 62 ELKNLNDRLAQYI 74 (147)
Q Consensus 62 ~mq~LNdRLA~YI 74 (147)
++..|+.++...-
T Consensus 268 a~~fL~~ql~~l~ 280 (719)
T PRK11519 268 SLAFLAQQLPEVR 280 (719)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555554433
No 405
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.35 E-value=76 Score=24.56 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhh
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKL 80 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~L 80 (147)
.=||+|++.|.+|+...++.|..-
T Consensus 36 ~lEK~Qv~~LAe~i~~lLdel~~~ 59 (171)
T PF11290_consen 36 ALEKQQVAALAERIDELLDELARR 59 (171)
T ss_pred EEeHHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999988877643
No 406
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.30 E-value=7.6e+02 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
+..++.++..+..+...+..++..++
T Consensus 314 ~~e~~~~~~~le~e~~~l~~el~~l~ 339 (1311)
T TIGR00606 314 VREKERELVDCQRELEKLNKERRLLN 339 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333
No 407
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=22.75 E-value=5.7e+02 Score=23.08 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=8.3
Q ss_pred CChhhhhhHhHH
Q psy20 49 LSPTIISRRQEK 60 (147)
Q Consensus 49 ~~~~~~~r~~EK 60 (147)
+.+|+..+..|-
T Consensus 328 ~npfG~ArPRe~ 339 (492)
T PF06273_consen 328 VNPFGAARPREV 339 (492)
T ss_pred CCCccccChHHH
Confidence 567777777765
No 408
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.71 E-value=3.1e+02 Score=20.00 Aligned_cols=73 Identities=11% Similarity=0.209 Sum_probs=40.8
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
+|..+.+.|+.- | +.|.++-..|..++++..+-. .....++..++.-+..+..|-..+..-+..|...+
T Consensus 51 ql~~vs~~l~~t--K-khLsqRId~vd~klDe~~ei~--------~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 51 QLEQVSESLSST--K-KHLSQRIDRVDDKLDEQKEIS--------KQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHH--H-HHHHHHHHHHHhhHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444431 2 446666666666666654432 22344556666666666666666666666666666
Q ss_pred Hhhh
Q psy20 142 LDLK 145 (147)
Q Consensus 142 ed~r 145 (147)
..+.
T Consensus 120 ~~ie 123 (126)
T PF07889_consen 120 DEIE 123 (126)
T ss_pred HHHh
Confidence 5553
No 409
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=22.63 E-value=3.5e+02 Score=22.20 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q psy20 78 QKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~ 96 (147)
..+..+|+.|..++.++.+
T Consensus 69 ~~~~~en~~Lk~~l~~~~~ 87 (284)
T COG1792 69 KDLALENEELKKELAELEQ 87 (284)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 4456666666666655443
No 410
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=22.50 E-value=4e+02 Score=21.16 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=25.3
Q ss_pred HhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 67 NDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 67 NdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
=+.+..|++.++.|+++|..|..++......
T Consensus 36 ~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 36 IDDYEQLLDENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567777899999999999999998776554
No 411
>KOG3000|consensus
Probab=22.45 E-value=4.3e+02 Score=22.20 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
+.+++++.|+..+..|-.+|-.||.+--.+=.++..+.
T Consensus 195 ~~~qe~~~l~~~l~~~~~~~~~le~ERdfyf~kLr~iE 232 (295)
T KOG3000|consen 195 KLKQELEELTQQLTELKTTIASLEKERDFYFSKLRDIE 232 (295)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccchh
Confidence 44889999999999999999999887766666654433
No 412
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=22.41 E-value=5.4e+02 Score=22.68 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 119 ALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 119 ~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
+..-+..|++.|.-|.|++..++++-
T Consensus 343 Q~qlaLEEKaaLrkerd~L~keLeek 368 (442)
T PF06637_consen 343 QTQLALEEKAALRKERDSLAKELEEK 368 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666666666666553
No 413
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.32 E-value=2.2e+02 Score=18.18 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESS 125 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ 125 (147)
+..+.++..+|+.+..
T Consensus 33 e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 33 EKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555544443
No 414
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=22.20 E-value=3.7e+02 Score=20.62 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKS 128 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~ 128 (147)
.||+++...|..+..--+
T Consensus 125 ~e~ee~~~~l~~le~~~~ 142 (175)
T PRK13182 125 REMEEMLERLQKLEARLK 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555544444333
No 415
>KOG3612|consensus
Probab=21.97 E-value=4.6e+02 Score=24.14 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 78 QKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~l 132 (147)
|.|-.....|..++.+++.....+....-..++.++...|..++..-.++-..++
T Consensus 456 r~l~a~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~n~~e~~ 510 (588)
T KOG3612|consen 456 RSLVAATEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAENIKEEI 510 (588)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666665555433223333555688888889888887776654433
No 416
>KOG4637|consensus
Probab=21.76 E-value=5.6e+02 Score=22.60 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=13.2
Q ss_pred HHHHHHHhhHHHHHhhhhhh
Q psy20 61 NELKNLNDRLAQYIELVQKL 80 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~L 80 (147)
++++.+|+.+-.|||+|+.-
T Consensus 188 ~q~~~~e~~~ka~~d~~~~e 207 (464)
T KOG4637|consen 188 EQCGTQENLSKAYIDRFRRE 207 (464)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 45666667777777776654
No 417
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=21.70 E-value=82 Score=20.92 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=13.7
Q ss_pred HHHHhhhhhhHHHHHHHH
Q psy20 71 AQYIELVQKLQNDKASLE 88 (147)
Q Consensus 71 A~YIekVR~LE~~N~~Le 88 (147)
...+|+|..|+++++.|.
T Consensus 66 l~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 66 LDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456788888888887764
No 418
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.67 E-value=3.1e+02 Score=19.58 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 108 ASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 108 ~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.+...+..+...++.+..+-..+.-+++.+...+..+
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555443
No 419
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.56 E-value=1.8e+02 Score=23.29 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHHH
Q psy20 78 QKLQNDKASLEYSLY 92 (147)
Q Consensus 78 R~LE~~N~~Le~ki~ 92 (147)
..|+++|..|+.++.
T Consensus 79 ~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 79 EELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 420
>PRK14154 heat shock protein GrpE; Provisional
Probab=21.35 E-value=2.9e+02 Score=21.90 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
.+|..++.+++++...-.+++.+.+|++
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyR 86 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLR 86 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444444444444
No 421
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.22 E-value=3.4e+02 Score=19.91 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=25.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 72 QYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSAL 130 (147)
Q Consensus 72 ~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l 130 (147)
..++..++||++-......|..|+..... .......-+.+|..|...+..+..+....
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~-~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEK-EEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666555444444444433211 11111112334555555555555444433
No 422
>PRK04406 hypothetical protein; Provisional
Probab=21.15 E-value=2.6e+02 Score=18.43 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=7.6
Q ss_pred HHHHHhhHHHHHhhhhhh
Q psy20 63 LKNLNDRLAQYIELVQKL 80 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~L 80 (147)
+..+++|+...=.|+-|.
T Consensus 6 ~~~le~Ri~~LE~~lAfQ 23 (75)
T PRK04406 6 IEQLEERINDLECQLAFQ 23 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555544433333333
No 423
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=21.01 E-value=1.9e+02 Score=26.74 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 109 SEKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 109 ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
+...+..|+..+..+..++..|.-++..+...++.
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999988888888888887765
No 424
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=21.00 E-value=3.2e+02 Score=20.00 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=11.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHH
Q psy20 74 IELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l 94 (147)
..+.+..|..-..+-..+.+.
T Consensus 55 ~~riKevd~~~~~l~~~~~er 75 (131)
T PF10158_consen 55 AKRIKEVDQEIAKLLQQMVER 75 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666555555555443
No 425
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.91 E-value=6e+02 Score=22.76 Aligned_cols=12 Identities=42% Similarity=0.711 Sum_probs=5.8
Q ss_pred HHHHHHhhHHHH
Q psy20 62 ELKNLNDRLAQY 73 (147)
Q Consensus 62 ~mq~LNdRLA~Y 73 (147)
.+..+++||..+
T Consensus 302 ~L~ele~RL~~l 313 (563)
T TIGR00634 302 RLNEIEERLAQI 313 (563)
T ss_pred HHHHHHHHHHHH
Confidence 344555555443
No 426
>PRK14156 heat shock protein GrpE; Provisional
Probab=20.48 E-value=3.6e+02 Score=20.76 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHh
Q psy20 80 LQNDKASLEYSLYSIEE 96 (147)
Q Consensus 80 LE~~N~~Le~ki~~l~~ 96 (147)
++.+...|+.++..++.
T Consensus 32 ~~~~l~~l~~e~~elkd 48 (177)
T PRK14156 32 EKSELELANERADEFEN 48 (177)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34444455555555544
No 427
>PRK14140 heat shock protein GrpE; Provisional
Probab=20.43 E-value=2.5e+02 Score=21.93 Aligned_cols=16 Identities=38% Similarity=0.291 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSLYSIE 95 (147)
Q Consensus 80 LE~~N~~Le~ki~~l~ 95 (147)
|+++...|+.++..++
T Consensus 42 l~~~i~~l~~ei~elk 57 (191)
T PRK14140 42 EQAKIAELEAKLDELE 57 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555554443
No 428
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=20.33 E-value=5.5e+02 Score=21.91 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI-EDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei-~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
++-|-.+-+..+..-.++-.|..+|..|+.++..+..+-. .....+..+|..| ......|-+-..--..|+-.+..++
T Consensus 129 ~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE-~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 129 RELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLE-KFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q ss_pred HHHHhhhcC
Q psy20 139 DELLDLKNK 147 (147)
Q Consensus 139 ~~~ed~r~K 147 (147)
......+..
T Consensus 208 ~~~~~~~~~ 216 (342)
T PF06632_consen 208 EEEKSPKQE 216 (342)
T ss_dssp HHHHHHH--
T ss_pred ccccchhhh
No 429
>PRK01156 chromosome segregation protein; Provisional
Probab=20.25 E-value=7.4e+02 Score=23.38 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.+.+++..++.+..+...|..++..+...+++++
T Consensus 410 ~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666655555555443
No 430
>PHA02109 hypothetical protein
Probab=20.20 E-value=3.1e+02 Score=21.59 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.+|..|--.|+.+..|-..++-.+.|++.++.+.
T Consensus 193 ~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~ 226 (233)
T PHA02109 193 KQISELTIKLEALSDEACQVKHKILNLRAEVKRR 226 (233)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888889999888888888888887764
No 431
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.17 E-value=2e+02 Score=24.05 Aligned_cols=7 Identities=43% Similarity=0.838 Sum_probs=2.5
Q ss_pred HHHhhHH
Q psy20 65 NLNDRLA 71 (147)
Q Consensus 65 ~LNdRLA 71 (147)
.++++++
T Consensus 246 ~l~~~l~ 252 (344)
T PF12777_consen 246 ELEEKLA 252 (344)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.14 E-value=7.4e+02 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
+.+.+..+..|-+...+-..+.-++.++...
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555656655555555555555555443
No 433
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=20.14 E-value=2.1e+02 Score=19.02 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=16.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 70 LAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 70 LA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
|...|.+-+.||.+-..||.+|-.+
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~ 28 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDK 28 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777776553
No 434
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=20.12 E-value=6.7e+02 Score=22.87 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=27.0
Q ss_pred ccCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Q psy20 102 FKKVKAASEKEIEDIRKALDR----ESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 102 ~~~~~~~ye~ei~~lR~~v~~----l~~ek~~l~le~~~l~~~~ed 143 (147)
+..+-..|+..+..|+.+.+. ...|..++.-+...+-.++..
T Consensus 231 W~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~ 276 (531)
T PF15450_consen 231 WQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQ 276 (531)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHH
Confidence 445557788888888888773 345666666666555555443
No 435
>PF03317 ELF: ELF protein; InterPro: IPR004990 This is a family of hypothetical proteins from cereal crops.
Probab=20.03 E-value=3.8e+02 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=22.5
Q ss_pred HHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC
Q psy20 66 LNDRLAQYIELVQKLQNDKASLEYSLYSIEESHT 99 (147)
Q Consensus 66 LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~ 99 (147)
|..-+-+|+|++|... .-..|.+-.+.+++..+
T Consensus 186 leealrSYlD~i~atD-~fsiLqAaYQdLrene~ 218 (284)
T PF03317_consen 186 LEEALRSYLDHIHATD-SFSILQAAYQDLRENEE 218 (284)
T ss_pred HHHHHHHHHHhhcccc-cHHHHHHHHHHHHhcCC
Confidence 3455778999988874 34567777777766543
Done!