Query psy20
Match_columns 147
No_of_seqs 145 out of 1187
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:40:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy20.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/20hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s4r_A Vimentin; alpha-helix, 100.0 1.1E-30 3.7E-35 181.5 7.3 91 54-147 2-92 (93)
2 1gk7_A Vimentin; intermediate 99.8 4.8E-19 1.6E-23 104.2 4.2 37 57-93 2-38 (39)
3 3ol1_A Vimentin; structural ge 98.7 1.8E-08 6.2E-13 72.1 5.8 47 101-147 10-56 (119)
4 3swk_A Vimentin; cytoskeleton, 98.0 4.6E-06 1.6E-10 56.4 3.3 36 112-147 1-36 (86)
5 3swk_A Vimentin; cytoskeleton, 94.6 0.18 6.1E-06 33.6 7.4 40 106-145 44-83 (86)
6 3ol1_A Vimentin; structural ge 93.4 1.1 3.8E-05 31.3 9.9 40 106-145 64-103 (119)
7 2wt7_B Transcription factor MA 91.6 1.4 4.9E-05 29.6 8.1 80 64-145 9-89 (90)
8 3tnu_B Keratin, type II cytosk 91.3 2.7 9.2E-05 29.5 11.7 38 60-97 35-72 (129)
9 3q8t_A Beclin-1; autophagy, AT 91.3 2.3 7.9E-05 28.6 10.4 87 60-147 10-96 (96)
10 2ocy_A RAB guanine nucleotide 91.2 1.9 6.5E-05 31.7 9.2 80 65-144 3-91 (154)
11 3tnu_A Keratin, type I cytoske 91.1 2.9 9.8E-05 29.4 10.2 37 60-96 37-73 (131)
12 1c1g_A Tropomyosin; contractIl 90.7 2.2 7.5E-05 31.4 9.5 34 60-93 5-38 (284)
13 2v71_A Nuclear distribution pr 90.0 0.95 3.2E-05 34.4 6.8 79 62-145 96-174 (189)
14 1p9i_A Cortexillin I/GCN4 hybr 89.4 0.48 1.7E-05 25.0 3.3 21 79-99 10-30 (31)
15 3na7_A HP0958; flagellar bioge 89.0 6 0.00021 30.6 11.1 81 61-141 39-127 (256)
16 3he5_A Synzip1; heterodimeric 88.7 0.43 1.5E-05 27.7 3.1 39 75-121 10-48 (49)
17 2dfs_A Myosin-5A; myosin-V, in 87.8 3.9 0.00013 38.4 10.6 61 74-138 983-1043(1080)
18 2v66_B Nuclear distribution pr 87.0 5.4 0.00018 27.7 8.5 63 78-144 6-68 (111)
19 2lf0_A Uncharacterized protein 86.0 3.5 0.00012 29.0 7.1 52 56-124 5-56 (123)
20 1t2k_D Cyclic-AMP-dependent tr 85.9 2.5 8.6E-05 25.8 5.8 36 111-146 22-57 (61)
21 2wt7_A Proto-oncogene protein 85.5 2.7 9.1E-05 26.0 5.8 36 110-145 22-57 (63)
22 1jnm_A Proto-oncogene C-JUN; B 85.4 2.3 7.8E-05 26.1 5.4 37 110-146 21-57 (62)
23 3lay_A Zinc resistance-associa 84.1 8.5 0.00029 28.6 9.0 64 55-122 68-131 (175)
24 1deq_A Fibrinogen (alpha chain 83.6 13 0.00044 31.1 10.7 15 61-75 67-81 (390)
25 1dh3_A Transcription factor CR 83.2 3.1 0.00011 25.1 5.2 38 54-98 15-52 (55)
26 1deq_A Fibrinogen (alpha chain 82.3 8.4 0.00029 32.2 9.0 18 107-124 109-126 (390)
27 1wle_A Seryl-tRNA synthetase; 82.1 9.2 0.00031 32.9 9.6 97 48-144 39-149 (501)
28 2oqq_A Transcription factor HY 81.0 2.4 8.2E-05 24.5 3.8 21 75-95 10-30 (42)
29 1ses_A Seryl-tRNA synthetase; 80.8 4.4 0.00015 33.9 7.0 91 54-144 6-97 (421)
30 1lq7_A Alpha3W; three helix bu 80.6 7.5 0.00026 23.7 6.4 61 76-142 3-65 (67)
31 3m91_A Proteasome-associated A 80.5 6.8 0.00023 23.4 5.9 36 110-145 8-43 (51)
32 1ci6_A Transcription factor AT 79.8 6 0.0002 24.4 5.8 35 111-145 23-57 (63)
33 3cvf_A Homer-3, homer protein 79.2 9.8 0.00034 24.8 6.8 24 74-97 12-35 (79)
34 2efr_A General control protein 78.8 17 0.00057 26.6 8.9 36 107-142 73-115 (155)
35 1dip_A Delta-sleep-inducing pe 78.4 1 3.5E-05 29.2 1.8 29 61-89 15-43 (78)
36 3vmx_A Voltage-gated hydrogen 78.4 4.2 0.00014 24.1 4.4 31 61-94 7-37 (48)
37 3cve_A Homer protein homolog 1 77.6 11 0.00039 24.0 7.3 25 74-98 6-30 (72)
38 2fxo_A Myosin heavy chain, car 77.0 16 0.00055 25.4 9.9 38 60-97 19-56 (129)
39 3o0z_A RHO-associated protein 77.0 11 0.00038 28.0 7.4 11 62-72 14-24 (168)
40 3mov_A Lamin-B1; LMNB1, B-type 76.4 8.1 0.00028 25.9 6.0 16 127-142 74-89 (95)
41 1gmj_A ATPase inhibitor; coile 76.1 7.4 0.00025 25.7 5.6 36 54-92 33-68 (84)
42 3oja_B Anopheles plasmodium-re 75.5 20 0.00067 30.3 9.7 32 111-142 544-575 (597)
43 3cvf_A Homer-3, homer protein 75.4 11 0.00037 24.6 6.2 23 112-134 28-50 (79)
44 3qne_A Seryl-tRNA synthetase, 73.6 7.2 0.00025 33.5 6.4 82 62-143 18-103 (485)
45 3mq9_A Bone marrow stromal ant 73.3 28 0.00094 28.7 9.9 86 60-145 372-470 (471)
46 1m1j_A Fibrinogen alpha subuni 73.1 37 0.0013 29.1 10.4 26 111-136 132-157 (491)
47 2dgc_A Protein (GCN4); basic d 72.7 5.4 0.00018 24.7 4.1 25 74-98 36-60 (63)
48 3lss_A Seryl-tRNA synthetase; 72.6 19 0.00064 30.9 8.7 48 51-98 9-60 (484)
49 2dgc_A Protein (GCN4); basic d 71.8 6.7 0.00023 24.3 4.4 33 110-142 29-61 (63)
50 2dq0_A Seryl-tRNA synthetase; 71.7 11 0.00036 32.0 7.0 90 54-143 6-101 (455)
51 1go4_E MAD1 (mitotic arrest de 71.4 9.2 0.00032 26.0 5.3 33 111-143 12-44 (100)
52 3trt_A Vimentin; cytoskeleton, 71.2 16 0.00056 22.8 7.0 24 114-137 52-75 (77)
53 1gd2_E Transcription factor PA 70.6 7.9 0.00027 24.6 4.6 24 121-144 46-69 (70)
54 3s84_A Apolipoprotein A-IV; fo 70.6 24 0.00084 27.7 8.5 23 57-79 18-40 (273)
55 3oja_B Anopheles plasmodium-re 68.8 52 0.0018 27.7 11.5 32 65-96 460-491 (597)
56 3ra3_A P1C; coiled coil domain 68.7 5.2 0.00018 20.5 2.7 19 79-97 4-22 (28)
57 3u1c_A Tropomyosin alpha-1 cha 68.2 24 0.00081 23.6 11.0 79 60-139 8-93 (101)
58 2wt7_A Proto-oncogene protein 68.2 7.9 0.00027 23.8 4.1 23 74-96 29-51 (63)
59 1jnm_A Proto-oncogene C-JUN; B 68.1 8 0.00027 23.6 4.1 24 74-97 28-51 (62)
60 3tnu_A Keratin, type I cytoske 67.8 28 0.00095 24.2 9.6 77 60-140 44-127 (131)
61 1gu4_A CAAT/enhancer binding p 67.8 13 0.00045 24.0 5.3 33 114-146 39-71 (78)
62 3ghg_A Fibrinogen alpha chain; 67.4 20 0.00068 31.3 7.7 11 115-125 114-124 (562)
63 1nkp_B MAX protein, MYC proto- 67.1 21 0.00073 22.7 8.1 76 55-145 6-81 (83)
64 1gd2_E Transcription factor PA 66.9 14 0.00046 23.5 5.1 17 111-127 50-66 (70)
65 3u1c_A Tropomyosin alpha-1 cha 66.8 26 0.00087 23.4 10.2 35 62-96 31-65 (101)
66 1dh3_A Transcription factor CR 66.5 5.9 0.0002 23.8 3.2 32 110-141 21-52 (55)
67 1hjb_A Ccaat/enhancer binding 66.3 14 0.00047 24.4 5.2 31 115-145 40-70 (87)
68 3ghg_A Fibrinogen alpha chain; 65.1 37 0.0013 29.6 8.9 25 112-136 132-156 (562)
69 3a2a_A Voltage-gated hydrogen 65.0 21 0.00071 21.7 5.7 16 79-94 15-30 (58)
70 2jee_A YIIU; FTSZ, septum, coi 64.7 26 0.00091 22.8 10.0 63 75-145 13-75 (81)
71 4ath_A MITF, microphthalmia-as 64.2 15 0.00051 24.2 5.0 36 62-97 43-78 (83)
72 1hjb_A Ccaat/enhancer binding 63.9 6.2 0.00021 26.1 3.2 23 74-96 42-64 (87)
73 4dzn_A Coiled-coil peptide CC- 62.4 16 0.00053 19.4 4.8 27 112-138 3-29 (33)
74 1i84_S Smooth muscle myosin he 61.4 46 0.0016 31.2 9.6 36 61-96 864-899 (1184)
75 1gs9_A Apolipoprotein E, APOE4 61.4 44 0.0015 24.3 8.7 30 92-121 76-105 (165)
76 3u59_A Tropomyosin beta chain; 61.1 33 0.0011 22.7 11.0 78 60-138 8-92 (101)
77 3u59_A Tropomyosin beta chain; 60.8 33 0.0011 22.7 10.2 33 62-94 31-63 (101)
78 2yy0_A C-MYC-binding protein; 60.7 12 0.00041 22.3 3.8 24 110-133 25-48 (53)
79 1gu4_A CAAT/enhancer binding p 60.6 7.8 0.00027 25.1 3.1 22 75-96 43-64 (78)
80 1m1j_A Fibrinogen alpha subuni 60.5 74 0.0025 27.3 9.8 61 60-124 64-124 (491)
81 1nlw_A MAD protein, MAX dimeri 60.3 31 0.001 22.1 7.0 74 56-143 6-79 (80)
82 2zqm_A Prefoldin beta subunit 60.2 34 0.0012 22.6 11.2 87 59-145 11-104 (117)
83 3ra3_B P2F; coiled coil domain 59.9 8.4 0.00029 19.7 2.5 18 77-94 2-19 (28)
84 1l8d_A DNA double-strand break 59.2 36 0.0012 22.5 12.0 83 61-143 10-103 (112)
85 1x8y_A Lamin A/C; structural p 59.1 33 0.0011 22.2 6.7 34 110-143 41-81 (86)
86 3na7_A HP0958; flagellar bioge 58.9 58 0.002 24.9 9.8 12 62-73 12-23 (256)
87 3bas_A Myosin heavy chain, str 58.8 34 0.0012 22.2 9.8 68 60-142 20-87 (89)
88 2dfs_A Myosin-5A; myosin-V, in 58.6 60 0.002 30.4 9.8 15 113-127 993-1007(1080)
89 1ci6_A Transcription factor AT 58.3 29 0.00099 21.2 5.9 25 72-96 27-51 (63)
90 1nkp_A C-MYC, MYC proto-oncoge 58.1 35 0.0012 22.1 8.0 77 56-146 11-87 (88)
91 3a7p_A Autophagy protein 16; c 57.5 52 0.0018 23.9 8.2 21 75-95 68-88 (152)
92 1fxk_A Prefoldin; archaeal pro 57.1 37 0.0013 22.1 10.3 85 61-145 8-99 (107)
93 2a01_A Apolipoprotein A-I; fou 56.2 53 0.0018 25.1 7.8 54 61-120 110-163 (243)
94 2v66_B Nuclear distribution pr 56.2 46 0.0016 22.9 9.4 48 73-135 54-101 (111)
95 3rmi_A Chorismate mutase prote 55.5 34 0.0011 23.3 5.9 36 110-145 11-46 (114)
96 1m1j_B Fibrinogen beta chain; 55.5 96 0.0033 26.4 9.9 14 60-73 99-112 (464)
97 1gk4_A Vimentin; intermediate 55.4 38 0.0013 21.7 9.2 33 110-142 39-78 (84)
98 3vkg_A Dynein heavy chain, cyt 55.1 69 0.0024 33.8 10.2 35 61-95 2014-2048(3245)
99 3m48_A General control protein 54.2 20 0.00067 19.5 3.5 27 114-140 3-29 (33)
100 2dq3_A Seryl-tRNA synthetase; 53.8 20 0.00069 29.9 5.4 84 54-137 6-101 (425)
101 2d8d_A Aroag, phospho-2-dehydr 53.7 36 0.0012 21.8 5.6 34 112-145 4-37 (90)
102 1ybz_A Chorismate mutase; cons 52.7 41 0.0014 22.0 5.8 34 112-145 18-51 (91)
103 3iox_A AGI/II, PA; alpha helix 52.6 91 0.0031 26.8 9.2 82 57-142 15-97 (497)
104 1nkp_A C-MYC, MYC proto-oncoge 52.6 21 0.00072 23.3 4.3 18 77-94 68-85 (88)
105 2wt7_B Transcription factor MA 52.0 31 0.001 22.9 5.0 8 66-73 33-40 (90)
106 2vkl_A RV0948C/MT0975; helical 51.7 37 0.0013 22.1 5.4 34 112-145 13-46 (90)
107 2fxo_A Myosin heavy chain, car 50.9 58 0.002 22.4 10.9 33 112-144 91-123 (129)
108 3a7p_A Autophagy protein 16; c 50.4 25 0.00084 25.6 4.7 28 56-83 63-90 (152)
109 2jee_A YIIU; FTSZ, septum, coi 50.0 47 0.0016 21.6 5.5 20 76-95 28-47 (81)
110 2a01_A Apolipoprotein A-I; fou 49.4 53 0.0018 25.1 6.8 19 61-79 154-172 (243)
111 3c3g_A Alpha/beta peptide with 49.0 31 0.001 18.7 5.0 28 114-141 3-30 (33)
112 3ajw_A Flagellar FLIJ protein; 48.8 61 0.0021 22.1 8.6 38 104-141 67-104 (150)
113 2hy6_A General control protein 48.5 32 0.0011 18.8 4.2 28 114-141 4-31 (34)
114 1ecm_A Endo-oxabicyclic transi 48.4 45 0.0015 22.1 5.6 33 113-145 7-39 (109)
115 3vp9_A General transcriptional 48.3 25 0.00085 23.5 4.1 20 104-123 68-87 (92)
116 2v71_A Nuclear distribution pr 47.0 88 0.003 23.4 10.9 23 60-82 23-45 (189)
117 2wq1_A General control protein 46.7 34 0.0012 18.5 5.0 27 114-140 3-29 (33)
118 2lem_A Apolipoprotein A-I; lip 46.6 22 0.00076 26.7 4.2 23 58-80 84-106 (216)
119 3ret_A Salicylate biosynthesis 46.6 41 0.0014 22.1 5.1 34 112-145 9-42 (101)
120 3r2p_A Apolipoprotein A-I; amp 45.9 83 0.0028 22.8 8.2 23 58-80 86-108 (185)
121 1nkp_B MAX protein, MYC proto- 45.4 22 0.00075 22.6 3.4 20 75-94 47-66 (83)
122 3w03_C DNA repair protein XRCC 45.0 44 0.0015 25.0 5.5 32 111-142 152-183 (184)
123 3c3f_A Alpha/beta peptide with 44.9 37 0.0013 18.5 5.0 29 113-141 3-31 (34)
124 1kd8_A GABH AIV, GCN4 acid bas 44.1 40 0.0014 18.6 4.5 28 114-141 4-31 (36)
125 2oxj_A Hybrid alpha/beta pepti 42.9 40 0.0014 18.3 5.0 29 113-141 3-31 (34)
126 3m9b_A Proteasome-associated A 42.5 21 0.0007 28.1 3.4 7 117-123 60-66 (251)
127 3hnw_A Uncharacterized protein 42.1 88 0.003 22.0 10.6 29 114-142 106-134 (138)
128 3plt_A Sphingolipid long chain 42.0 1.2E+02 0.0041 23.5 8.6 27 113-139 133-159 (234)
129 4a56_A PULS, pullulanase secre 41.8 16 0.00056 24.4 2.4 21 58-78 73-93 (93)
130 3oja_A Leucine-rich immune mol 41.8 1.4E+02 0.0049 24.4 9.9 22 119-140 443-464 (487)
131 2efr_A General control protein 41.6 98 0.0033 22.4 12.0 25 119-143 127-151 (155)
132 3mtu_E Head morphogenesis prot 41.4 69 0.0024 20.6 6.1 36 106-141 39-74 (77)
133 3s84_A Apolipoprotein A-IV; fo 41.3 1.3E+02 0.0043 23.5 11.3 18 62-79 89-106 (273)
134 1uo4_A General control protein 40.8 44 0.0015 18.2 3.7 27 114-140 4-30 (34)
135 1kd8_B GABH BLL, GCN4 acid bas 40.1 47 0.0016 18.3 5.5 29 114-142 4-32 (36)
136 3v86_A De novo design helix; c 39.9 37 0.0013 17.1 4.1 22 124-145 6-27 (27)
137 1lwu_C Fibrinogen gamma chain; 39.0 1.2E+02 0.004 24.5 7.5 16 74-89 4-19 (323)
138 3a5t_A Transcription factor MA 38.7 0.52 1.8E-05 32.7 -5.7 75 63-139 18-93 (107)
139 3he5_B Synzip2; heterodimeric 38.6 57 0.0019 18.8 4.9 9 84-92 5-13 (52)
140 3o0z_A RHO-associated protein 38.0 1.2E+02 0.0041 22.3 9.5 12 80-91 67-78 (168)
141 3hnw_A Uncharacterized protein 37.4 1.1E+02 0.0036 21.6 10.5 26 110-135 109-134 (138)
142 3r2p_A Apolipoprotein A-I; amp 36.7 96 0.0033 22.4 6.2 17 63-79 80-96 (185)
143 2ke4_A CDC42-interacting prote 36.3 92 0.0031 20.7 5.5 28 110-137 61-88 (98)
144 1nfn_A Apolipoprotein E3; lipi 36.2 1.3E+02 0.0043 22.1 9.4 30 91-120 75-104 (191)
145 1t2k_D Cyclic-AMP-dependent tr 35.8 70 0.0024 19.0 5.9 22 75-96 29-50 (61)
146 2bni_A General control protein 35.6 55 0.0019 17.8 3.9 27 114-140 4-30 (34)
147 3m9b_A Proteasome-associated A 35.6 51 0.0017 25.9 4.7 16 112-127 76-91 (251)
148 3vem_A Helicase protein MOM1; 35.2 1.1E+02 0.0038 21.1 6.8 29 43-71 24-52 (115)
149 1a93_B MAX protein, coiled coi 33.9 60 0.002 17.7 3.9 25 112-136 8-32 (34)
150 1avy_A Fibritin, gpwac M; bact 33.2 64 0.0022 20.5 4.0 37 62-98 9-45 (74)
151 3utk_A Lipoprotein OUTS; neste 33.0 27 0.00091 24.9 2.5 22 58-79 110-131 (133)
152 3vkg_A Dynein heavy chain, cyt 32.8 3.3E+02 0.011 28.9 11.1 78 62-140 2022-2099(3245)
153 3qh9_A Liprin-beta-2; coiled-c 32.4 1E+02 0.0035 20.0 6.1 15 111-125 54-68 (81)
154 2gtv_X CM, chorismate mutase; 32.1 59 0.002 21.8 4.0 33 113-145 5-45 (104)
155 2ocy_A RAB guanine nucleotide 31.9 1.4E+02 0.0049 21.5 9.6 13 110-122 85-97 (154)
156 2yy0_A C-MYC-binding protein; 31.5 82 0.0028 18.6 4.9 28 113-140 21-48 (53)
157 2wuj_A Septum site-determining 31.3 44 0.0015 19.9 2.9 22 74-95 33-54 (57)
158 3i00_A HIP-I, huntingtin-inter 31.0 1.3E+02 0.0045 20.7 8.3 16 62-77 19-34 (120)
159 2zvf_A Alanyl-tRNA synthetase; 30.9 78 0.0027 22.2 4.8 25 72-96 29-53 (171)
160 3u06_A Protein claret segregat 30.7 2.1E+02 0.0072 23.6 8.0 10 135-144 48-57 (412)
161 1ik9_A DNA repair protein XRCC 29.8 1.8E+02 0.0061 21.9 8.8 21 75-95 139-159 (213)
162 1t3j_A Mitofusin 1; coiled coi 29.2 54 0.0019 22.0 3.4 37 60-96 31-68 (96)
163 3kin_B Kinesin heavy chain; mo 29.2 1.2E+02 0.0041 20.6 5.3 28 119-146 90-117 (117)
164 2j5u_A MREC protein; bacterial 28.8 15 0.00052 28.5 0.7 35 58-92 26-60 (255)
165 3brv_B NF-kappa-B essential mo 28.6 69 0.0024 20.2 3.6 47 79-126 23-69 (70)
166 1deb_A APC protein, adenomatou 28.3 97 0.0033 18.4 5.7 32 114-145 20-51 (54)
167 1gk6_A Vimentin; intermediate 28.3 89 0.003 18.6 4.0 16 127-142 37-52 (59)
168 1hlo_A Protein (transcription 28.0 1.1E+02 0.0039 19.0 6.6 62 55-131 16-77 (80)
169 3mtu_A Tropomyosin alpha-1 cha 27.8 1.2E+02 0.004 19.1 5.0 23 60-82 8-30 (75)
170 2kxh_B Peptide of FAR upstream 27.6 22 0.00077 18.9 1.0 14 67-80 7-20 (31)
171 1ses_A Seryl-tRNA synthetase; 27.6 2.6E+02 0.0088 23.0 9.2 71 68-138 28-98 (421)
172 4ati_A MITF, microphthalmia-as 27.6 23 0.00079 24.4 1.3 16 74-89 73-88 (118)
173 2j5u_A MREC protein; bacterial 27.5 32 0.0011 26.6 2.3 19 78-96 22-40 (255)
174 2eqb_B RAB guanine nucleotide 27.4 1.4E+02 0.0048 19.9 11.0 24 120-143 71-94 (97)
175 3vlc_E Golgi to ER traffic pro 27.0 92 0.0031 20.8 4.2 65 72-139 17-84 (94)
176 2l7b_A Apolipoprotein E, APO-E 26.4 2.4E+02 0.0083 22.3 8.0 19 61-79 158-176 (307)
177 2r2v_A GCN4 leucine zipper; co 26.3 85 0.0029 17.0 5.0 27 114-140 4-30 (34)
178 2d7c_C RAB11 family-interactin 26.2 50 0.0017 18.8 2.4 11 66-76 16-26 (42)
179 2dq0_A Seryl-tRNA synthetase; 25.4 2.9E+02 0.01 23.0 10.6 74 61-139 31-104 (455)
180 2xdj_A Uncharacterized protein 25.3 1.4E+02 0.0048 19.2 9.0 34 110-143 33-66 (83)
181 3sol_A Type II secretion pathw 25.2 48 0.0016 22.1 2.5 20 58-77 73-92 (94)
182 2xu6_A MDV1 coiled coil; prote 25.0 1.3E+02 0.0046 19.0 4.5 35 62-96 29-63 (72)
183 3oja_A Leucine-rich immune mol 24.9 2.8E+02 0.0096 22.5 9.8 6 113-118 444-449 (487)
184 3efg_A Protein SLYX homolog; x 24.9 1.4E+02 0.0047 18.9 6.7 12 80-91 12-23 (78)
185 1uii_A Geminin; human, DNA rep 24.7 1.5E+02 0.0051 19.3 6.1 30 115-144 36-65 (83)
186 3rq9_A TSI2, type VI secretion 24.5 70 0.0024 20.6 3.1 36 110-145 16-52 (85)
187 3he4_A Synzip6; heterodimeric 24.4 1.1E+02 0.0038 17.8 5.5 19 122-140 28-46 (56)
188 4etp_A Kinesin-like protein KA 24.2 83 0.0028 25.9 4.4 9 80-88 15-23 (403)
189 3mov_A Lamin-B1; LMNB1, B-type 24.1 1.6E+02 0.0054 19.4 6.3 11 83-93 20-30 (95)
190 3i00_A HIP-I, huntingtin-inter 23.9 1.8E+02 0.0062 20.0 7.8 35 110-144 46-80 (120)
191 2oqq_A Transcription factor HY 23.5 1.1E+02 0.0038 17.4 5.8 18 79-96 7-24 (42)
192 3bas_A Myosin heavy chain, str 23.4 1.5E+02 0.0052 19.0 5.3 27 70-96 58-84 (89)
193 3w03_C DNA repair protein XRCC 23.3 1.6E+02 0.0055 21.9 5.4 36 58-93 138-177 (184)
194 2er8_A Regulatory protein Leu3 23.0 43 0.0015 20.1 1.9 19 76-94 50-68 (72)
195 2w83_C C-JUN-amino-terminal ki 23.0 1.6E+02 0.0053 18.9 8.5 33 113-145 32-64 (77)
196 3cl3_D NF-kappa-B essential mo 22.6 1.6E+02 0.0055 20.7 4.9 23 74-96 29-51 (130)
197 3pp5_A BRK1, protein brick1; t 22.6 84 0.0029 20.0 3.2 11 57-67 16-26 (73)
198 3u06_A Protein claret segregat 22.5 3.1E+02 0.011 22.6 7.6 18 75-92 17-34 (412)
199 3qne_A Seryl-tRNA synthetase, 22.0 3.7E+02 0.013 22.8 10.6 73 62-139 34-106 (485)
200 2lhr_A Iron-regulated surface 21.9 1.6E+02 0.0054 18.6 4.6 45 70-122 16-60 (78)
201 3ibp_A Chromosome partition pr 21.8 3.1E+02 0.011 22.0 8.9 33 63-95 5-37 (302)
202 2pjw_H Uncharacterized protein 21.6 58 0.002 21.4 2.4 16 57-72 59-74 (88)
203 4dk0_A Putative MACA; alpha-ha 21.6 2.8E+02 0.0097 21.4 8.3 35 107-141 118-152 (369)
204 2wvr_A Geminin; DNA replicatio 21.5 2.4E+02 0.0084 21.3 6.1 32 114-145 104-135 (209)
205 3p8c_E Probable protein brick1 21.5 99 0.0034 19.7 3.4 11 57-67 16-26 (75)
206 2e7s_A RAB guanine nucleotide 21.5 1.6E+02 0.0056 20.8 4.9 55 69-124 33-87 (135)
207 1go4_E MAD1 (mitotic arrest de 21.4 1.9E+02 0.0066 19.3 5.2 27 69-95 13-39 (100)
208 3tnu_B Keratin, type II cytosk 20.7 2.1E+02 0.007 19.5 10.7 78 58-139 40-124 (129)
209 1jei_A Emerin; membrane protei 20.3 31 0.0011 20.7 0.7 35 84-118 8-42 (53)
210 1x4t_A Hypothetical protein LO 20.3 1.3E+02 0.0043 20.0 3.8 17 80-96 50-66 (92)
211 3fx7_A Putative uncharacterize 20.0 2E+02 0.0068 19.1 7.3 15 80-94 25-39 (94)
212 1zme_C Proline utilization tra 20.0 89 0.0031 18.4 2.9 15 80-94 49-63 (70)
No 1
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=99.96 E-value=1.1e-30 Score=181.47 Aligned_cols=91 Identities=26% Similarity=0.458 Sum_probs=82.8
Q ss_pred hhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIE 133 (147)
Q Consensus 54 ~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le 133 (147)
..|.+||++||+||||||+||||||+||++|+.|+.+|..++.+. .+.++.+|+.+|.+||.+|+.++.++++++++
T Consensus 2 ~~R~~EKe~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~---~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e 78 (93)
T 3s4r_A 2 STRTNEKVELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG---KSRLGDLYEEEMRELRRQVDQLTNDKARVEVE 78 (93)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998753 56899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC
Q psy20 134 KRRLLDELLDLKNK 147 (147)
Q Consensus 134 ~~~l~~~~ed~r~K 147 (147)
+++++.++++||.|
T Consensus 79 ~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 79 RDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999865
No 2
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=99.76 E-value=4.8e-19 Score=104.17 Aligned_cols=37 Identities=41% Similarity=0.523 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
.+||++||+||||||+||||||+||++|+.|+.+|..
T Consensus 2 ~~EKe~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 2 SNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999864
No 3
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=98.72 E-value=1.8e-08 Score=72.15 Aligned_cols=47 Identities=19% Similarity=0.521 Sum_probs=42.8
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy20 101 EFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147 (147)
Q Consensus 101 ~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~K 147 (147)
.+++++.+|+.+|.+||++|+.++.+|++|+++++|++.+++|||.|
T Consensus 10 ~~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K 56 (119)
T 3ol1_A 10 HMSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 56 (119)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999865
No 4
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=97.96 E-value=4.6e-06 Score=56.42 Aligned_cols=36 Identities=22% Similarity=0.616 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~K 147 (147)
+|++||.+|+.++.++++|.++++|++.++++||.|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~K 36 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 36 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999865
No 5
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=94.62 E-value=0.18 Score=33.59 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 106 KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 106 ~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
+...+.+|..||+.||+++..+..|+.+++.+..++.=+|
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455778889999999999999999999999999998776
No 6
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.35 E-value=1.1 Score=31.28 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 106 KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 106 ~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
+...+.+|..+|+.||+.+..+..|+.++..+..++.=+|
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778889999999999999999999999999887654
No 7
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=91.62 E-value=1.4 Score=29.56 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=52.0
Q ss_pred HHHHhhHHHH-HhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 64 KNLNDRLAQY-IELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 64 q~LNdRLA~Y-IekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
..||..|..+ -+.|..|-+.-+.|....-...-... ...-....+.+..+|..+++.+..++..+..+++.++...+
T Consensus 9 reLN~~L~gls~eev~~lKq~RRtlKNRgyAq~CR~K--r~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 9 RELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYK--RVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777544 34555555555555554433222111 11223456788889999999999999999999999998888
Q ss_pred hhh
Q psy20 143 DLK 145 (147)
Q Consensus 143 d~r 145 (147)
+|.
T Consensus 87 ~L~ 89 (90)
T 2wt7_B 87 KLA 89 (90)
T ss_dssp TTC
T ss_pred Hhc
Confidence 764
No 8
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.35 E-value=2.7 Score=29.47 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=26.5
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
|.++..||..+-+.-..+-.|..+|..|+..|......
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56677777776666666667777778888777665443
No 9
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.30 E-value=2.3 Score=28.61 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=67.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
...++.|-.-=+..+.....||.+...|..+|..+..... .-..-...|-.+-++++.++.....+...|..++.....
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~-~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~ 88 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAE-RLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQM 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677778888999999999999988766532 122223456667789999999999999999999999999
Q ss_pred HHHhhhcC
Q psy20 140 ELLDLKNK 147 (147)
Q Consensus 140 ~~ed~r~K 147 (147)
.++.|+.|
T Consensus 89 qLdkL~K~ 96 (96)
T 3q8t_A 89 QLDKLKKK 96 (96)
T ss_dssp HHHHHHTC
T ss_pred HHHHhhcC
Confidence 99998865
No 10
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.21 E-value=1.9 Score=31.69 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=46.8
Q ss_pred HHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc---------ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 65 NLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE---------FKKVKAASEKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 65 ~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~---------~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
.||.+|..-|++.-.||.....+..++...+.+...- -..-...+..++..|...+..-..-+...+.+..
T Consensus 3 sLStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~ 82 (154)
T 2ocy_A 3 ALSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 82 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887776666654332221100 0001234456666666666555555555566666
Q ss_pred HHHHHHHhh
Q psy20 136 RLLDELLDL 144 (147)
Q Consensus 136 ~l~~~~ed~ 144 (147)
.+..++++|
T Consensus 83 ~ie~ElEeL 91 (154)
T 2ocy_A 83 KLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
No 11
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.15 E-value=2.9 Score=29.43 Aligned_cols=37 Identities=30% Similarity=0.247 Sum_probs=18.2
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
|.++..||..+-+.-..+-.|..+|..|+..|.....
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4455555555544444445555566666666655443
No 12
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=90.74 E-value=2.2 Score=31.39 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=17.3
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
|..|..|+..+..+...+..|+..-..|..++..
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~ 38 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQ 38 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444444433
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.00 E-value=0.95 Score=34.39 Aligned_cols=79 Identities=24% Similarity=0.279 Sum_probs=38.8
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
++..|..--..+-.++|.||+.|-.|+......... ...+...|...|...= .+..=..++..|.+++..++.++
T Consensus 96 el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~S----leD~e~kln~aiEr~a-lLE~El~EKe~l~~~~QRLkdE~ 170 (189)
T 2v71_A 96 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMS----LEDFEQRLNQAIERNA-FLESELDEKESLLVSVQRLKDEA 170 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556677888999999999887664332 2233444444443321 22222235667777777788887
Q ss_pred Hhhh
Q psy20 142 LDLK 145 (147)
Q Consensus 142 ed~r 145 (147)
.|+|
T Consensus 171 rDLk 174 (189)
T 2v71_A 171 RDLR 174 (189)
T ss_dssp ----
T ss_pred HHHH
Confidence 7776
No 14
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=89.37 E-value=0.48 Score=24.99 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q psy20 79 KLQNDKASLEYSLYSIEESHT 99 (147)
Q Consensus 79 ~LE~~N~~Le~ki~~l~~~~~ 99 (147)
.||.+|+.|..+..++..+.+
T Consensus 10 sleaenkqlkakveellakvg 30 (31)
T 1p9i_A 10 SLEAENKQLKAKVEELLAKVG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999998876643
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.03 E-value=6 Score=30.63 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=46.4
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCC--------cccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTT--------EFKKVKAASEKEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~--------~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~l 132 (147)
.++..|++++...-..+..++.+-+.++.+|..+..+... ...+.+..+..+|..+...+..+..+...+.-
T Consensus 39 ~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 39 NDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777777777777777777665544311 12333444555666655555555555444444
Q ss_pred HHHHHHHHH
Q psy20 133 EKRRLLDEL 141 (147)
Q Consensus 133 e~~~l~~~~ 141 (147)
+++.+...+
T Consensus 119 ~ie~~~~~l 127 (256)
T 3na7_A 119 EIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 16
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.73 E-value=0.43 Score=27.65 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=22.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALD 121 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~ 121 (147)
+.|-.||.+|..|..+- +. ...+-.-.+++|.+||..|+
T Consensus 10 nevaslenenetlkkkn--lh------kkdliaylekeianlrkkie 48 (49)
T 3he5_A 10 NEVASLENENETLKKKN--LH------KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccHHHHHhc--cc------HHHHHHHHHHHHHHHHHHhc
Confidence 45666666666654442 11 12233445888999988774
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.82 E-value=3.9 Score=38.35 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=31.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 74 IELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
-.+|..|+.++..|+.++..+..... .....+.....+|...|..+..++..|+-+++.+.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~----~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKK----TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554333221 12233333334666666666666666666666555
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.97 E-value=5.4 Score=27.69 Aligned_cols=63 Identities=25% Similarity=0.282 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 78 QKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
+.|-..|..|..++..|+.+-.. ...-....+..|...|..+...+..+...+-.+...-|||
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~----~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEH----QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 44555555555555555544320 1111123444555555555555555555444444444443
No 19
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=86.00 E-value=3.5 Score=29.05 Aligned_cols=52 Identities=29% Similarity=0.301 Sum_probs=30.8
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHH
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
...||.+||.|||||-.+ ..++..+..+ ....+...|..+++.|-.+|..+.
T Consensus 5 ke~~K~Eiq~L~drLD~~--------------~rKlaaa~~r---gd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 5 KEVEKNEIKRLSDRLDAI--------------RHQQADLSLV---EAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp CCSHHHHHHHHHHHHHHH--------------HHHHHHSCTT---TCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--------------HHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999998643 1222222221 244555666666666666665443
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.86 E-value=2.5 Score=25.82 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
..+.+|...++.+..+|..|..++..+..++..|+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999999999999999999999888763
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=85.46 E-value=2.7 Score=25.98 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
...+.+|...++.+..+|..|..++..+..++..|+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999999999888775
No 22
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=85.42 E-value=2.3 Score=26.14 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
...+.+|...+..+..+|..|..++..+..++..|+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999988864
No 23
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=84.14 E-value=8.5 Score=28.61 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=39.7
Q ss_pred hhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 55 ~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
...+.+.+|+.|- ..|-.++..|-++-..+..++..+.....++...+..+ ..+|.++|.++..
T Consensus 68 LT~EQq~ql~~I~---~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL-~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 68 LTTEQQATAQKIY---DDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAV-AKEMESLGQKLDE 131 (175)
T ss_dssp CCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHH-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHHH
Confidence 3455667777774 45556777777777777777877766544434444444 4566676666543
No 24
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.64 E-value=13 Score=31.05 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=8.6
Q ss_pred HHHHHHHhhHHHHHh
Q psy20 61 NELKNLNDRLAQYIE 75 (147)
Q Consensus 61 e~mq~LNdRLA~YIe 75 (147)
..|..|++.|+.|..
T Consensus 67 ~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 67 SRINKLRDSLFNYQK 81 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666665543
No 25
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=83.19 E-value=3.1 Score=25.12 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=28.0
Q ss_pred hhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 54 ~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
..+...++-+..|-+ +|..|+.+|..|..++..+....
T Consensus 15 rSR~RKk~~~~~LE~-------~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 15 ESRRKKKEYVKSLEN-------RVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666654 57889999999999999887643
No 26
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.33 E-value=8.4 Score=32.18 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy20 107 AASEKEIEDIRKALDRES 124 (147)
Q Consensus 107 ~~ye~ei~~lR~~v~~l~ 124 (147)
..|..+..+|+.+|..+.
T Consensus 109 n~~~e~s~eLe~~i~~lk 126 (390)
T 1deq_A 109 NTFKQINEDLRSRIEILR 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555544443
No 27
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=82.06 E-value=9.2 Score=32.87 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=58.9
Q ss_pred CCChhhhhhHhHHHHHHHHHhhHH----HHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHH----------HHH
Q psy20 48 PLSPTIISRRQEKNELKNLNDRLA----QYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASE----------KEI 113 (147)
Q Consensus 48 ~~~~~~~~r~~EKe~mq~LNdRLA----~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye----------~ei 113 (147)
|+=++...|.|--.-.+.|..|-. ..|++|-.|.++-+.|..+++.++.....-...+...-. .+.
T Consensus 39 pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~ 118 (501)
T 1wle_A 39 PLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQY 118 (501)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHH
T ss_pred CccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccH
Confidence 555666666654444467766643 248999999999999988888887665321222222110 134
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
..+..++..+..+...++.++..+..+++++
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666543
No 28
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.02 E-value=2.4 Score=24.45 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=14.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~ 95 (147)
.+|+.||..|..||.++..+.
T Consensus 10 ~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777776654
No 29
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=80.77 E-value=4.4 Score=33.92 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=53.2
Q ss_pred hhhHhHHHHHHHHHhhHHHH-HhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 54 ISRRQEKNELKNLNDRLAQY-IELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 54 ~~r~~EKe~mq~LNdRLA~Y-IekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~l 132 (147)
..|.|--.--+.|..|.... +++|-.|.++-+.+..+++.++.....-...+...-......+..++..+..+...++.
T Consensus 6 ~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (421)
T 1ses_A 6 RLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEE 85 (421)
T ss_dssp HHHHCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455666665543 88888888888888888888776653111111100012344566666666666666666
Q ss_pred HHHHHHHHHHhh
Q psy20 133 EKRRLLDELLDL 144 (147)
Q Consensus 133 e~~~l~~~~ed~ 144 (147)
++..+..+++++
T Consensus 86 ~~~~~~~~~~~~ 97 (421)
T 1ses_A 86 ALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666553
No 30
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=80.64 E-value=7.5 Score=23.70 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=38.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy20 76 LVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRES--SSKSALAIEKRRLLDELL 142 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~--~ek~~l~le~~~l~~~~e 142 (147)
+|..||...+.|+.+...+-. ..++..+ ...+++|...|+++. -+..+++-++..+..++.
T Consensus 3 rvkaleekvkaleekvkalgg-----ggrieel-kkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 3 RVKALEEKVKALEEKVKALGG-----GGRIEEL-KKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHSCC-----SSSHHHH-HHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcC-----CccHHHH-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 678888888888888766522 3444443 455667888887764 234455666666666554
No 31
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.51 E-value=6.8 Score=23.42 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
+..+.+++.++..+...|.+|...+...+.++..++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777777766666555555543
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.82 E-value=6 Score=24.41 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
..+.+|...+.++..+|..|..++..+..++..|+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888877765
No 33
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=79.18 E-value=9.8 Score=24.79 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=18.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 74 IELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
..|+..+|..|..|+.++..+...
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~ 35 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERS 35 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 467788888888888888776554
No 34
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=78.80 E-value=17 Score=26.57 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy20 107 AASEKEIEDIRKALDRES-------SSKSALAIEKRRLLDELL 142 (147)
Q Consensus 107 ~~ye~ei~~lR~~v~~l~-------~ek~~l~le~~~l~~~~e 142 (147)
..|+..|..|..++.+.. +...+|+.+++.+...+.
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556655555554433 333344444444444433
No 35
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.40 E-value=1 Score=29.22 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEY 89 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ 89 (147)
++...|-++.+..++|+..||.+|..|..
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888889999999999988765
No 36
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=78.35 E-value=4.2 Score=24.14 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
.-|...|++|| .||..||..+..++-+|.-+
T Consensus 7 ~kLKe~n~~L~---~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 7 LRLKQINIQLA---TKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHccHHHHHHHHH
Confidence 35777888886 58888888877777766544
No 37
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=77.60 E-value=11 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=18.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 74 IELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
..|...+|..|..|+.++..+...-
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4677888888888888887765543
No 38
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=77.05 E-value=16 Score=25.43 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=24.1
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
.+.++.|...|..-...-..||..+..|..+.+.+...
T Consensus 19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q 56 (129)
T 2fxo_A 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777655555566777777777766665443
No 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.00 E-value=11 Score=27.95 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=5.4
Q ss_pred HHHHHHhhHHH
Q psy20 62 ELKNLNDRLAQ 72 (147)
Q Consensus 62 ~mq~LNdRLA~ 72 (147)
++..+|+.|=.
T Consensus 14 QL~E~n~kLk~ 24 (168)
T 3o0z_A 14 QLEEANDLLRT 24 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 40
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=76.40 E-value=8.1 Score=25.87 Aligned_cols=16 Identities=31% Similarity=0.150 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy20 127 KSALAIEKRRLLDELL 142 (147)
Q Consensus 127 k~~l~le~~~l~~~~e 142 (147)
|..|.+||..++.-++
T Consensus 74 Kl~Le~EIatYrkLLE 89 (95)
T 3mov_A 74 KLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5556667766665543
No 41
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=76.12 E-value=7.4 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=20.2
Q ss_pred hhhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy20 54 ISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLY 92 (147)
Q Consensus 54 ~~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~ 92 (147)
-.+..|+++|..|..++ ++.+-+-..+...|+.+|.
T Consensus 33 YfrqkekEqL~~LKkkl---~~el~~h~~ei~~le~~i~ 68 (84)
T 1gmj_A 33 YFRARAKEQLAALKKHK---ENEISHHAKEIERLQKEIE 68 (84)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34667888888888776 2333333334444444443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.46 E-value=20 Score=30.31 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
.++..++..++........+..|..++..++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333344444433333
No 43
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.42 E-value=11 Score=24.57 Aligned_cols=23 Identities=9% Similarity=0.307 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEK 134 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~ 134 (147)
.+..+...+++...+..++..++
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 44
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=73.59 E-value=7.2 Score=33.48 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=42.7
Q ss_pred HHHHHHhhHHH--HHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQ--YIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASE--KEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 62 ~mq~LNdRLA~--YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye--~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
--+.|..|... .+++|-.|.++-+.|..+++.++.....-...+..... .....+..++..+..+...++.++..+
T Consensus 18 v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 18 IKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666543 47888888888888888777776654311111111100 012334444444445555555555555
Q ss_pred HHHHHh
Q psy20 138 LDELLD 143 (147)
Q Consensus 138 ~~~~ed 143 (147)
..++++
T Consensus 98 ~~~~~~ 103 (485)
T 3qne_A 98 DKNLRS 103 (485)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 45
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.32 E-value=28 Score=28.67 Aligned_cols=86 Identities=13% Similarity=0.145 Sum_probs=52.0
Q ss_pred HHHHHHHHhhHHHHHhhhhh-hHH--HHHHHHHHHHHHHhhcCC-----c-----ccCchHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQK-LQN--DKASLEYSLYSIEESHTT-----E-----FKKVKAASEKEIEDIRKALDRESSS 126 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~-LE~--~N~~Le~ki~~l~~~~~~-----~-----~~~~~~~ye~ei~~lR~~v~~l~~e 126 (147)
++.|..+.+++-..|++.+. .|. -++.|+.+|..++..... . ...+-...+++..+..+.|.++..+
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGE 451 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666676676666666554 233 333566666665443210 0 1122233455555666678888888
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy20 127 KSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 127 k~~l~le~~~l~~~~ed~r 145 (147)
...+..++.++..+++.+|
T Consensus 452 ~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 452 ITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888888888888888776
No 46
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=73.08 E-value=37 Score=29.11 Aligned_cols=26 Identities=8% Similarity=0.250 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
..|.-||..|+++..+..+|+..|+.
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666543
No 47
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=72.75 E-value=5.4 Score=24.71 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=18.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 74 IELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
-.+|..|+.+|..|..++..|+...
T Consensus 36 e~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 36 EDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778888888888888876643
No 48
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=72.60 E-value=19 Score=30.90 Aligned_cols=48 Identities=6% Similarity=0.046 Sum_probs=33.7
Q ss_pred hhhhhhHhH--HHHHHHHHhhHHH--HHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 51 PTIISRRQE--KNELKNLNDRLAQ--YIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 51 ~~~~~r~~E--Ke~mq~LNdRLA~--YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
.+...|.+- -..-+.|..|+.. .+++|-.|..+-+.|..+++.++...
T Consensus 9 di~~~r~~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~r 60 (484)
T 3lss_A 9 DIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLI 60 (484)
T ss_dssp CGGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHcCCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556552 1345567777765 48999999988888888887776654
No 49
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=71.80 E-value=6.7 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
...+.+|..+|..+..+|..|..++..|+..+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888888888888877653
No 50
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=71.65 E-value=11 Score=31.98 Aligned_cols=90 Identities=9% Similarity=0.089 Sum_probs=46.2
Q ss_pred hhhHhHHHHHHHHHhhHH-H---HHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHH--HHHHHHHHHHHHHHHHHH
Q psy20 54 ISRRQEKNELKNLNDRLA-Q---YIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAAS--EKEIEDIRKALDRESSSK 127 (147)
Q Consensus 54 ~~r~~EKe~mq~LNdRLA-~---YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~y--e~ei~~lR~~v~~l~~ek 127 (147)
..|.|--.--+.|..|.. . .+++|-.|.++-+.|..+++.++.....-...+...- ......+..++..+..+.
T Consensus 6 ~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~ 85 (455)
T 2dq0_A 6 LIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRI 85 (455)
T ss_dssp HHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 344444444556666654 3 5788888888888888877777665431111111100 011223444444444444
Q ss_pred HHHHHHHHHHHHHHHh
Q psy20 128 SALAIEKRRLLDELLD 143 (147)
Q Consensus 128 ~~l~le~~~l~~~~ed 143 (147)
..++.++..+..++++
T Consensus 86 ~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 86 GELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555444
No 51
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.39 E-value=9.2 Score=26.02 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
.++..+|..|+.+..++.+|.-+++.+...++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999998888775
No 52
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=71.17 E-value=16 Score=22.84 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
...+..|-++.+.-..|++|++.+
T Consensus 52 ~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 52 RQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333434443444555555554
No 53
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=70.59 E-value=7.9 Score=24.57 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 121 DRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 121 ~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
..+..++..|..++..+..++..|
T Consensus 46 ~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 46 SSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455555555555555555544
No 54
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=70.59 E-value=24 Score=27.71 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHhhHHHHHhhhhh
Q psy20 57 RQEKNELKNLNDRLAQYIELVQK 79 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~YIekVR~ 79 (147)
..=...+..|-.+|..|.+.++.
T Consensus 18 ~~l~~~~eel~~~L~P~~~~l~~ 40 (273)
T 3s84_A 18 EEIGKELEELRARLLPHANEVSQ 40 (273)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHH
Confidence 33344566666667777666653
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.83 E-value=52 Score=27.68 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=14.9
Q ss_pred HHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 65 NLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 65 ~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.++..+....++....|.....++.++...+.
T Consensus 460 ~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 460 ELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33334444444444455555555555554433
No 56
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=68.73 E-value=5.2 Score=20.50 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q psy20 79 KLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 79 ~LE~~N~~Le~ki~~l~~~ 97 (147)
.||-+|..||.+|..++++
T Consensus 4 alefendaleqkiaalkqk 22 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHH
Confidence 5788888888888777654
No 57
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=68.22 E-value=24 Score=23.59 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=41.4
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHH-------HHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQND-------KASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~-------N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~l 132 (147)
|.-|+.|-.-.-.+++++-.+|.. +..++.+|..|..+.. .....-..|...+.+....++.........+.
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~-~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR-VTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777666666666666666544 4445555555544332 11122234455555555555555554444455
Q ss_pred HHHHHHH
Q psy20 133 EKRRLLD 139 (147)
Q Consensus 133 e~~~l~~ 139 (147)
++.++..
T Consensus 87 ev~~L~R 93 (101)
T 3u1c_A 87 EVASLNR 93 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 58
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.17 E-value=7.9 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=17.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHh
Q psy20 74 IELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~ 96 (147)
-++|..|+.+|..|..+|..|..
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888888866544
No 59
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=68.09 E-value=8 Score=23.58 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=18.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 74 IELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
-++|..|+.+|..|..++..|...
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888877654
No 60
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.83 E-value=28 Score=24.19 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=43.5
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSS-------KSALAI 132 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~e-------k~~l~l 132 (147)
+.++|.|.-.+.+.-.....||.....++.....-.... ...+ ...+.++..+|..+.....+ |..|.+
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~---q~~i-~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~ 119 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQI---QEMI-GSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQ 119 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777776666777777777666554322111 1111 33466666666655544433 445566
Q ss_pred HHHHHHHH
Q psy20 133 EKRRLLDE 140 (147)
Q Consensus 133 e~~~l~~~ 140 (147)
||..++.-
T Consensus 120 EIatYRkL 127 (131)
T 3tnu_A 120 EIATYRRL 127 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665543
No 61
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.76 E-value=13 Score=23.99 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
..+...+..+..+|..|..++..|..++..|+.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667888999999999999999999988864
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.40 E-value=20 Score=31.27 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q psy20 115 DIRKALDRESS 125 (147)
Q Consensus 115 ~lR~~v~~l~~ 125 (147)
+||+.|..|..
T Consensus 114 ELRRrIqyLKe 124 (562)
T 3ghg_A 114 DLRSRIEVLKR 124 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 63
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=67.14 E-value=21 Score=22.66 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=46.2
Q ss_pred hhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEK 134 (147)
Q Consensus 55 ~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~ 134 (147)
+...|+.-...+|+.|...-+-|=.+. ..+. ....+-..--.+|..|..++..+..+...|..+.
T Consensus 6 hn~~Er~RR~~in~~f~~Lr~lvP~~~--------------~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 6 HNALERKRRDHIKDSFHSLRDSVPSLQ--------------GEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSGGGT--------------TSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHCCCCC--------------CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888889988875544433221 1111 1122222234577788888888877777777777
Q ss_pred HHHHHHHHhhh
Q psy20 135 RRLLDELLDLK 145 (147)
Q Consensus 135 ~~l~~~~ed~r 145 (147)
..+...+..+.
T Consensus 71 ~~L~~~l~~L~ 81 (83)
T 1nkp_B 71 ALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHHHhc
Confidence 77777766553
No 64
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.92 E-value=14 Score=23.47 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSK 127 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek 127 (147)
.+...||.+|..+..++
T Consensus 50 ~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 50 LENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555544
No 65
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.84 E-value=26 Score=23.43 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=20.9
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.+..++++..-.-+.|..|-..|..|+.++.....
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666555443
No 66
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.53 E-value=5.9 Score=23.83 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
..++.+|..+|..+..+|..|..++..+...+
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888889999999999998888877653
No 67
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.28 E-value=14 Score=24.43 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 115 DIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 115 ~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.+...+..+..+|..|..++..|..++..|+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777888888888888887777665
No 68
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.09 E-value=37 Score=29.59 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
.|+.||..|+++..+..+|+++|+-
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554443
No 69
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=65.02 E-value=21 Score=21.72 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHHHH
Q psy20 79 KLQNDKASLEYSLYSI 94 (147)
Q Consensus 79 ~LE~~N~~Le~ki~~l 94 (147)
.|-+.|-.|.++++.|
T Consensus 15 kLKq~n~~L~~kv~~L 30 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHL 30 (58)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.67 E-value=26 Score=22.83 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=41.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 75 ELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.||..+=.....|..+|.+++.+. .....+...++...+.+..++.+|.-|...++.-+..+-
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN--------~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKN--------NSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666677777776653 223455667777777778888888888887777766653
No 71
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=64.21 E-value=15 Score=24.15 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=28.6
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~ 97 (147)
.||.=|.|+..--.+.+.||..|+.|-..|++|...
T Consensus 43 ~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 43 KLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 356667888888888899999999999988887543
No 72
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.85 E-value=6.2 Score=26.14 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=19.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHh
Q psy20 74 IELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~ 96 (147)
-.+|-.||.+|..|..+|..|..
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999987654
No 73
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=62.36 E-value=16 Score=19.37 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
+|..|+++|..+..+.+.|..|+..++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777766554
No 74
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=61.41 E-value=46 Score=31.24 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=19.3
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
+++..|...+...-+.+..++.+...|+.++..+..
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555545555556666666665555543
No 75
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=61.38 E-value=44 Score=24.26 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHHhhcCCcccCchHHHHHHHHHHHHHHH
Q psy20 92 YSIEESHTTEFKKVKAASEKEIEDIRKALD 121 (147)
Q Consensus 92 ~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~ 121 (147)
..++.+-.|-...++......+..||..|.
T Consensus 76 ~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~ 105 (165)
T 1gs9_A 76 SELEEQLTPVAEETRARLSKELQAAQARLG 105 (165)
T ss_dssp HHHTTSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555666666666553
No 76
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=61.06 E-value=33 Score=22.73 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=38.9
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHH-------HHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKA-------SLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAI 132 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~-------~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~l 132 (147)
|.-|+.|-.-.-.+++++-.+|.+.+ .++.+|..+..+.. .....-..|...+.++...++.........+.
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq-~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK-GTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667666666666666666655544 44555555544332 12222233444555555555544444444444
Q ss_pred HHHHHH
Q psy20 133 EKRRLL 138 (147)
Q Consensus 133 e~~~l~ 138 (147)
++..|.
T Consensus 87 evasLn 92 (101)
T 3u59_A 87 EVASLN 92 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 77
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=60.78 E-value=33 Score=22.70 Aligned_cols=33 Identities=27% Similarity=0.171 Sum_probs=17.8
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l 94 (147)
.+..++++..-.-+.|..|...+..|+.++...
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555443
No 78
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.69 E-value=12 Score=22.34 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIE 133 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le 133 (147)
..+..+|+..+..+..+...+...
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444443
No 79
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.56 E-value=7.8 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=18.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh
Q psy20 75 ELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.+|-.|+.+|..|..+|..|..
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999877644
No 80
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=60.48 E-value=74 Score=27.26 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=29.8
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
+.-+..|+++|+.|...-...-+--..+-..|.. ... ........|..+..+|+.+|..+.
T Consensus 64 ~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~---~~~-q~~dndn~~~e~S~eLe~ri~yIK 124 (491)
T 1m1j_A 64 SQRIDNIRQQLADSQNKYKTSNRVIVETINILKP---GLE-GAQQLDENYGHVSTELRRRIVTLK 124 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH---HHh-hhccchhHHHHHHHHHHHHHHHHH
Confidence 4557778888888765444333333333222222 211 122233455555566666665544
No 81
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=60.29 E-value=31 Score=22.10 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=43.8
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
..-|+.-...||++|...=+-|=.+.. ..+. ....+-..-..+|..|+.....+..++..|..+..
T Consensus 6 N~~ER~RR~~lk~~f~~Lr~~vP~~~~-------------~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 6 NEMEKNRRAHLRLSLEKLKGLVPLGPD-------------SSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCSS-------------SCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC-------------CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777778888888765554433310 0010 01111122245777888888777777777777777
Q ss_pred HHHHHHHh
Q psy20 136 RLLDELLD 143 (147)
Q Consensus 136 ~l~~~~ed 143 (147)
.+...++.
T Consensus 72 ~L~~~L~~ 79 (80)
T 1nlw_A 72 HLKRQLEK 79 (80)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 77766654
No 82
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.21 E-value=34 Score=22.62 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc-----cc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 59 EKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE-----FK--KVKAASEKEIEDIRKALDRESSSKSALA 131 (147)
Q Consensus 59 EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~-----~~--~~~~~ye~ei~~lR~~v~~l~~ek~~l~ 131 (147)
.-.+++.|+.++-.+......|+.+-..++.=+.++..-.... .+ -+.......+..|...++.+..+...|.
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le 90 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777777777777777666666666655433210 00 1112334455556666666666666666
Q ss_pred HHHHHHHHHHHhhh
Q psy20 132 IEKRRLLDELLDLK 145 (147)
Q Consensus 132 le~~~l~~~~ed~r 145 (147)
.++..+...+++++
T Consensus 91 ~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 91 RQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665554
No 83
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=59.92 E-value=8.4 Score=19.72 Aligned_cols=18 Identities=17% Similarity=0.468 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy20 77 VQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 77 VR~LE~~N~~Le~ki~~l 94 (147)
+|.|.+.|..|..+|..+
T Consensus 2 irrlkqknarlkqeiaal 19 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAAL 19 (28)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHH
Confidence 455666666666555443
No 84
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.16 E-value=36 Score=22.51 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=46.0
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh-h-cCCcccC-c--------hHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE-S-HTTEFKK-V--------KAASEKEIEDIRKALDRESSSKSA 129 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~-~-~~~~~~~-~--------~~~ye~ei~~lR~~v~~l~~ek~~ 129 (147)
+.+..+-..+...-+....++.+-..|...+..+.. . ..|-... + -..+..++..++..+..+..+...
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~ 89 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSE 89 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666677777777777777654 1 2222211 1 123455556666666666666666
Q ss_pred HHHHHHHHHHHHHh
Q psy20 130 LAIEKRRLLDELLD 143 (147)
Q Consensus 130 l~le~~~l~~~~ed 143 (147)
+..++..+...+.+
T Consensus 90 l~~~~~~l~~~~~~ 103 (112)
T 1l8d_A 90 LERELRRIDMEIKR 103 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555543
No 85
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=59.13 E-value=33 Score=22.17 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q psy20 110 EKEIEDIRKALDRES-------SSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 110 e~ei~~lR~~v~~l~-------~ek~~l~le~~~l~~~~ed 143 (147)
+.++.++|..+.... .-|..|.+||..++.-++.
T Consensus 41 E~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 41 EREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 455555555444333 3355677777777765553
No 86
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=58.89 E-value=58 Score=24.88 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=5.1
Q ss_pred HHHHHHhhHHHH
Q psy20 62 ELKNLNDRLAQY 73 (147)
Q Consensus 62 ~mq~LNdRLA~Y 73 (147)
+||.+-.++..+
T Consensus 12 ~LQ~lD~~i~~l 23 (256)
T 3na7_A 12 EISHLDKEIDSL 23 (256)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 87
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=58.80 E-value=34 Score=22.22 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=41.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
.+++..|-..|+.--.....||..+..|..+.+.|..+ +.++-.....+...+..|...+..+..
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q---------------l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS---------------MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666555455556777777777766666543 344444455566667777777776665
Q ss_pred HHH
Q psy20 140 ELL 142 (147)
Q Consensus 140 ~~e 142 (147)
-++
T Consensus 85 rl~ 87 (89)
T 3bas_A 85 LVG 87 (89)
T ss_dssp HHT
T ss_pred Hhh
Confidence 544
No 88
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=58.61 E-value=60 Score=30.42 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSK 127 (147)
Q Consensus 113 i~~lR~~v~~l~~ek 127 (147)
+..++.++..+..++
T Consensus 993 ~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEK 1007 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 89
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.30 E-value=29 Score=21.17 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=18.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 72 QYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 72 ~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
....+|..|+.+|..|+.+|..|..
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346778888889888888877643
No 90
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=58.15 E-value=35 Score=22.14 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=49.1
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
..-|+.-...||++|...=+-|=.+.. + .+. ....+-..--.+|..|..+...+..+...|..+..
T Consensus 11 n~~ER~RR~~ln~~f~~Lr~~vP~~~~-~------------~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~ 76 (88)
T 1nkp_A 11 NVLERQRRNELKRSFFALRDQIPELEN-N------------EKA-PKVVILKKATAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGTT-C------------TTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCC-C------------CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888765444444321 0 011 11112222245788888888888888888888888
Q ss_pred HHHHHHHhhhc
Q psy20 136 RLLDELLDLKN 146 (147)
Q Consensus 136 ~l~~~~ed~r~ 146 (147)
.|...+.+|+.
T Consensus 77 ~L~~rl~~L~~ 87 (88)
T 1nkp_A 77 QLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhc
Confidence 88888887763
No 91
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=57.54 E-value=52 Score=23.90 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=11.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~ 95 (147)
+.+..|+.+...|+.+|..+.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 92
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.05 E-value=37 Score=22.08 Aligned_cols=85 Identities=9% Similarity=0.209 Sum_probs=51.9
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCc-----cc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTE-----FK--KVKAASEKEIEDIRKALDRESSSKSALAIE 133 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~-----~~--~~~~~ye~ei~~lR~~v~~l~~ek~~l~le 133 (147)
.+++.|+.++.........|+.+-..++.=+.++..-.... .+ -+.......+..+...++.+..+...+..+
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~ 87 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888887888777777776666655432210 01 111223445556666666666666667777
Q ss_pred HHHHHHHHHhhh
Q psy20 134 KRRLLDELLDLK 145 (147)
Q Consensus 134 ~~~l~~~~ed~r 145 (147)
+..+...+++++
T Consensus 88 ~~~~~~~l~~lk 99 (107)
T 1fxk_A 88 EERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666664
No 93
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=56.21 E-value=53 Score=25.06 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=26.0
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKAL 120 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v 120 (147)
..|..|-.+|..|+++.+. .+...+..++.+-.+....+.......+.+++..+
T Consensus 110 ~~~eelr~~L~P~~eel~~------~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l 163 (243)
T 2a01_A 110 EEMELYRQKVEPLRAELQE------GARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL 163 (243)
T ss_dssp HHHHHHHTTHHHHHHHHHH------HHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665543 22334444554444333344444444444444444
No 94
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.17 E-value=46 Score=22.88 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 73 YIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 73 YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
+..++|.||+.|-.||..-... ...+.|+-..+....-.++-|+.|++
T Consensus 54 l~~~iReLEq~NDDLER~~R~t---------------~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 54 LHKYVRELEQANDDLERAKRAT---------------IVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHH---------------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677888888877654332 22344444444444445555555554
No 95
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=55.55 E-value=34 Score=23.31 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
...|.++|.+||.+-.+-..|..+.-.+..++-.+|
T Consensus 11 ~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K 46 (114)
T 3rmi_A 11 LSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLK 46 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888777777777776666666665555
No 96
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=55.48 E-value=96 Score=26.40 Aligned_cols=14 Identities=43% Similarity=0.816 Sum_probs=9.7
Q ss_pred HHHHHHHHhhHHHH
Q psy20 60 KNELKNLNDRLAQY 73 (147)
Q Consensus 60 Ke~mq~LNdRLA~Y 73 (147)
+.+++.|++++...
T Consensus 99 ~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 99 KPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 45688888877654
No 97
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.41 E-value=38 Score=21.71 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRES-------SSKSALAIEKRRLLDELL 142 (147)
Q Consensus 110 e~ei~~lR~~v~~l~-------~ek~~l~le~~~l~~~~e 142 (147)
+.++..+|..+.... .-|..|.+||..++.-++
T Consensus 39 E~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 39 QDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 445555554443332 234556667766665443
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.10 E-value=69 Score=33.77 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=15.2
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
+.+..++..|+.--++....+++-..|+.++..++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~ 2048 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYK 2048 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 99
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=54.22 E-value=20 Score=19.51 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
.+|-..|+++..+|..|+.|+..++.-
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356667888888888888888877654
No 100
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=53.82 E-value=20 Score=29.85 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=44.4
Q ss_pred hhhHhHHHHHHHHHhhHHH---HHhhhhhhHHHHHHHHHHHHHHHhhcCCccc---------CchHHHHHHHHHHHHHHH
Q psy20 54 ISRRQEKNELKNLNDRLAQ---YIELVQKLQNDKASLEYSLYSIEESHTTEFK---------KVKAASEKEIEDIRKALD 121 (147)
Q Consensus 54 ~~r~~EKe~mq~LNdRLA~---YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~---------~~~~~ye~ei~~lR~~v~ 121 (147)
..|.|--.--+.|..|... .+++|-.|.++-+.+..+++.++.....-.. .......+++..++.+|.
T Consensus 6 ~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (425)
T 2dq3_A 6 LIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEID 85 (425)
T ss_dssp HHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHH
Confidence 3344444445566666544 4788888887777777777776655421100 111111234555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q psy20 122 RESSSKSALAIEKRRL 137 (147)
Q Consensus 122 ~l~~ek~~l~le~~~l 137 (147)
.+..+-..++.++..+
T Consensus 86 ~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 86 RLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544443
No 101
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=53.69 E-value=36 Score=21.82 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.|.++|.+||.+-.+-..|..+.-.+..++-.+|
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K 37 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLLSERGRLVQEIGRLQ 37 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777666666666665555555555544
No 102
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=52.68 E-value=41 Score=22.02 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.|.++|.+||.+-.+-..|..+.-.+-.++-.+|
T Consensus 18 ~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K 51 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIK 51 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888887777776666666666666665554
No 103
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=52.64 E-value=91 Score=26.82 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHhh-HHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 57 RQEKNELKNLNDR-LAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 57 ~~EKe~mq~LNdR-LA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
+.|-+.+|--|.. -+.|=.+|....++|..++.+...++.+. ......|++.+..-.+.+..-..+.+.-+.++.
T Consensus 15 q~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrN----a~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~ 90 (497)
T 3iox_A 15 QTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRN----ADAKADYEAKLAKYQADLAKYQKDLADYPVKLK 90 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555543 46777888889999999888887776543 334677888887777777777777777766666
Q ss_pred HHHHHHH
Q psy20 136 RLLDELL 142 (147)
Q Consensus 136 ~l~~~~e 142 (147)
.+..+..
T Consensus 91 aYe~~~~ 97 (497)
T 3iox_A 91 AYEDEQT 97 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 104
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.63 E-value=21 Score=23.27 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy20 77 VQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 77 VR~LE~~N~~Le~ki~~l 94 (147)
+..|..+|..|..+|..|
T Consensus 68 ~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 68 EDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334455555555554443
No 105
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=52.03 E-value=31 Score=22.93 Aligned_cols=8 Identities=25% Similarity=0.135 Sum_probs=3.0
Q ss_pred HHhhHHHH
Q psy20 66 LNDRLAQY 73 (147)
Q Consensus 66 LNdRLA~Y 73 (147)
|-+|-+.-
T Consensus 33 lKNRgyAq 40 (90)
T 2wt7_B 33 LKNRGYAQ 40 (90)
T ss_dssp HHHHHHHH
T ss_pred hhhhHHHH
Confidence 33343333
No 106
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=51.66 E-value=37 Score=22.09 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.|.++|.+||.+-.+-..|..+.-.+-.++-.+|
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K 46 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKAR 46 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666555555555555555544444
No 107
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=50.90 E-value=58 Score=22.45 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.+.+.......+...+.+++.++..+...++++
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666777777777777777777765
No 108
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.44 E-value=25 Score=25.65 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=22.6
Q ss_pred hHhHHHHHHHHHhhHHHHHhhhhhhHHH
Q psy20 56 RRQEKNELKNLNDRLAQYIELVQKLQND 83 (147)
Q Consensus 56 r~~EKe~mq~LNdRLA~YIekVR~LE~~ 83 (147)
-..+..++..|..-++..-.+++.|+.+
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLeee 90 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLKEV 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888988899888888888744
No 109
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.01 E-value=47 Score=21.63 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=10.1
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q psy20 76 LVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l~ 95 (147)
.|-.|..+|..|..+..+++
T Consensus 28 EieELKekN~~L~~e~~e~~ 47 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554443
No 110
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=49.41 E-value=53 Score=25.05 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=11.0
Q ss_pred HHHHHHHhhHHHHHhhhhh
Q psy20 61 NELKNLNDRLAQYIELVQK 79 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~ 79 (147)
..+..|-.+|..|.+.||.
T Consensus 154 ~~veelk~~l~P~~ee~r~ 172 (243)
T 2a01_A 154 AHVDALRTHLAPYSDELRQ 172 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3455566666666665554
No 111
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=49.03 E-value=31 Score=18.70 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
++|...|+++..+|..|+.|+..++.-+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566677888888888888887776543
No 112
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=48.83 E-value=61 Score=22.10 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=25.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 104 KVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 104 ~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
..+..|...|..|...|.........+..+++..+..+
T Consensus 67 ~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l 104 (150)
T 3ajw_A 67 NRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSW 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457777888888888777666666666666555543
No 113
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=48.54 E-value=32 Score=18.75 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
++|-..|+++..+|..|+.+...++..+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4566677788888888888887777654
No 114
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=48.44 E-value=45 Score=22.14 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
|.++|.+||.+-.+-..|..+.-.+..++-.+|
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K 39 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAK 39 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666555555555444
No 115
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=48.29 E-value=25 Score=23.50 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q psy20 104 KVKAASEKEIEDIRKALDRE 123 (147)
Q Consensus 104 ~~~~~ye~ei~~lR~~v~~l 123 (147)
.++..|+.+|..||.+|+..
T Consensus 68 kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 68 KMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 45677888888888887643
No 116
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.04 E-value=88 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=12.9
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQN 82 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~ 82 (147)
+..+..|-.=|..|.+--|.||.
T Consensus 23 ~q~~~~le~El~EFqesSrELE~ 45 (189)
T 2v71_A 23 KQSFQEARDELVEFQEGSRELEA 45 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666555543
No 117
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=46.71 E-value=34 Score=18.53 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
++|...|+++..++..++.|+..++.-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455667777777777777777766554
No 118
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=46.64 E-value=22 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhh
Q psy20 58 QEKNELKNLNDRLAQYIELVQKL 80 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~L 80 (147)
.=...|..+-.+++.|.+.++..
T Consensus 84 ~l~kd~ee~r~~l~py~~el~~~ 106 (216)
T 2lem_A 84 EMNKDLEEVKQKVQPYLDEFQKK 106 (216)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHH
T ss_pred HHhccHHHHHHhhhHHHHHHHHH
Confidence 33456777888899998888763
No 119
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=46.57 E-value=41 Score=22.13 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
.|.++|.+||.+-.+-..|..+.-.+..++-.+|
T Consensus 9 ~L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K 42 (101)
T 3ret_A 9 GLADIREAIDRIDLDIVQALGRRMDYVKAASRFE 42 (101)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777777776666666666666665555
No 120
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=45.93 E-value=83 Score=22.80 Aligned_cols=23 Identities=17% Similarity=0.422 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhh
Q psy20 58 QEKNELKNLNDRLAQYIELVQKL 80 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~L 80 (147)
.=...|..+-.+++.|++.++..
T Consensus 86 ~l~kdlee~r~~l~P~~~e~~~~ 108 (185)
T 3r2p_A 86 EMSKDLEEVKAKVQPYLDDFQKK 108 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHH
Confidence 33456777888899999888863
No 121
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.39 E-value=22 Score=22.63 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=9.8
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l 94 (147)
+-++.|+.++..|+.++..+
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554444
No 122
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.02 E-value=44 Score=25.00 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
..+.+|+.++..+..+|.+|..|.+.+...++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567778888888888888887777766654
No 123
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=44.94 E-value=37 Score=18.47 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
+++|...|+++..++..|+.|+..++.-+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566677778888888888877776543
No 124
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=44.06 E-value=40 Score=18.59 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
++|-..|+++..++..|+.|+..++..+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4555666677777777777776666554
No 125
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=42.85 E-value=40 Score=18.33 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
+++|-..|+++..+|..|+.|...++.-+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34666677888888888888877776543
No 126
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=42.53 E-value=21 Score=28.15 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy20 117 RKALDRE 123 (147)
Q Consensus 117 R~~v~~l 123 (147)
+.+++.+
T Consensus 60 ~~ql~~L 66 (251)
T 3m9b_A 60 EARIDSL 66 (251)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 127
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.08 E-value=88 Score=22.01 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
+.+...+..+..++..|+.++..+..+++
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 128
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=41.99 E-value=1.2e+02 Score=23.49 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
|..|.+++.....+..-.+.++.++..
T Consensus 133 l~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 133 IPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 445555555555555445555555443
No 129
>4a56_A PULS, pullulanase secretion protein PULS; protein transport, T2SS; 1.24A {Klebsiella oxytoca}
Probab=41.84 E-value=16 Score=24.43 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhhHHHHHhhhh
Q psy20 58 QEKNELKNLNDRLAQYIELVQ 78 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR 78 (147)
-++..++.||..++.||++.|
T Consensus 73 ~~~~kC~~Ln~~l~~Fi~~~~ 93 (93)
T 4a56_A 73 PEATKCSQFNRQLAPFIDSLR 93 (93)
T ss_dssp CHHHHHHHHHHHTHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHHhhC
Confidence 456778899999999999764
No 130
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.79 E-value=1.4e+02 Score=24.36 Aligned_cols=22 Identities=5% Similarity=-0.179 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy20 119 ALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 119 ~v~~l~~ek~~l~le~~~l~~~ 140 (147)
++..+..++++++-++..+..+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhh
Confidence 3333334444444444444333
No 131
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=41.58 E-value=98 Score=22.39 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 119 ALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 119 ~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
.++....+-..+.....++..++..
T Consensus 127 eLd~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 127 EMKQLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchHHHHHHHHH
Confidence 3333333333334444444444333
No 132
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=41.41 E-value=69 Score=20.62 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 106 KAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 106 ~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
+..++++|.+|...+......+..+.-+++....++
T Consensus 39 ~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~EL 74 (77)
T 3mtu_E 39 YGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 667899999999888777777777777777655554
No 133
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=41.28 E-value=1.3e+02 Score=23.54 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=9.0
Q ss_pred HHHHHHhhHHHHHhhhhh
Q psy20 62 ELKNLNDRLAQYIELVQK 79 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~ 79 (147)
.+..|-.+|+.|.+.+|.
T Consensus 89 ~~eeLr~~L~p~~eelr~ 106 (273)
T 3s84_A 89 NADSLQASLRPHADELKA 106 (273)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344455555555554443
No 134
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.78 E-value=44 Score=18.19 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
.+|...|+++..++..|+-|+..++.-
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455667778888888888888777654
No 135
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=40.12 E-value=47 Score=18.29 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDELL 142 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~e 142 (147)
++|...|+++..++..|+.++..++.-+-
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 45666677777777777777776665544
No 136
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=39.93 E-value=37 Score=17.10 Aligned_cols=22 Identities=41% Similarity=0.401 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy20 124 SSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 124 ~~ek~~l~le~~~l~~~~ed~r 145 (147)
..+...|..|...++.++.|++
T Consensus 6 kdevgelkgevralkdevkdlk 27 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVKDLK 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHhHHHHHHHHHhccC
Confidence 3444556666666777777664
No 137
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.97 E-value=1.2e+02 Score=24.53 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=6.6
Q ss_pred HhhhhhhHHHHHHHHH
Q psy20 74 IELVQKLQNDKASLEY 89 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ 89 (147)
+.||..|..+-.+||.
T Consensus 4 ~~~~~~~~~~~~~~e~ 19 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQ 19 (323)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 138
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=38.68 E-value=0.52 Score=32.73 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=31.4
Q ss_pred HHHHHhhHHHH-HhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 63 LKNLNDRLAQY-IELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 63 mq~LNdRLA~Y-IekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
...||..|..+ .+.|..|-+.-+.|..+.....-... ...-....+.++..|..+++.+..|+..+..|++.++.
T Consensus 18 v~elN~~L~~Ls~~e~~~lK~~RR~lKNR~yAq~CR~r--k~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 18 VRELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVK--RVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp HHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777543 24444554444444444332211110 00001122333344444444455555555554444433
No 139
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.61 E-value=57 Score=18.81 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy20 84 KASLEYSLY 92 (147)
Q Consensus 84 N~~Le~ki~ 92 (147)
|.-|..+|.
T Consensus 5 naylrkkia 13 (52)
T 3he5_B 5 NAYLRKKIA 13 (52)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333444443
No 140
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=37.99 E-value=1.2e+02 Score=22.32 Aligned_cols=12 Identities=25% Similarity=0.188 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSL 91 (147)
Q Consensus 80 LE~~N~~Le~ki 91 (147)
||+++..|.+.+
T Consensus 67 Leke~~~LQa~L 78 (168)
T 3o0z_A 67 TDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 141
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.37 E-value=1.1e+02 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKR 135 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~ 135 (147)
..++.+++..+..+..+..+|+.+++
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444
No 142
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=36.66 E-value=96 Score=22.44 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=9.6
Q ss_pred HHHHHhhHHHHHhhhhh
Q psy20 63 LKNLNDRLAQYIELVQK 79 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~ 79 (147)
...|-.+|--.++.+|.
T Consensus 80 ~~~Lr~~l~kdlee~r~ 96 (185)
T 3r2p_A 80 TEGLRQEMSKDLEEVKA 96 (185)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHH
Confidence 44555666666665553
No 143
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.26 E-value=92 Score=20.71 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRL 137 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l 137 (147)
+.+|.++...|+.+..+..+++.-+..+
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777666665554444
No 144
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=36.21 E-value=1.3e+02 Score=22.15 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=10.6
Q ss_pred HHHHHhhcCCcccCchHHHHHHHHHHHHHH
Q psy20 91 LYSIEESHTTEFKKVKAASEKEIEDIRKAL 120 (147)
Q Consensus 91 i~~l~~~~~~~~~~~~~~ye~ei~~lR~~v 120 (147)
+..++.+-.|....++..+...+..+|..|
T Consensus 75 ~~~l~~qL~P~~~e~~~~l~~~~e~lr~~l 104 (191)
T 1nfn_A 75 KSELEEQLTPVAEETRARLSKELQAAQARL 104 (191)
T ss_dssp HHHHTTC----------CHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 333444444434444555555566666555
No 145
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.82 E-value=70 Score=19.03 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh
Q psy20 75 ELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~~ 96 (147)
++|..|+.+|..|..+|..|..
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888876654
No 146
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=35.59 E-value=55 Score=17.79 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
++|-..|+++..++..|+.|+..++.-
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 455567777777787787777776654
No 147
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.57 E-value=51 Score=25.89 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSK 127 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek 127 (147)
++.+++.+|..+..+.
T Consensus 76 ~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 76 TLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 148
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=35.19 E-value=1.1e+02 Score=21.14 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=11.1
Q ss_pred CCCCCCCChhhhhhHhHHHHHHHHHhhHH
Q psy20 43 PRPGSPLSPTIISRRQEKNELKNLNDRLA 71 (147)
Q Consensus 43 ~~~~~~~~~~~~~r~~EKe~mq~LNdRLA 71 (147)
|++..+.+-....-.+|-+-|+-.+|.+.
T Consensus 24 p~~r~~~~~~sDPL~~ELeRLr~~~d~~~ 52 (115)
T 3vem_A 24 PVPQIPFPVFNDPFLHELEKLRRESENSK 52 (115)
T ss_dssp ---------CCSHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCccccchHHHHHHHHHHHHHHHH
Confidence 34445554444444566666666655443
No 149
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=33.94 E-value=60 Score=17.69 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 112 EIEDIRKALDRESSSKSALAIEKRR 136 (147)
Q Consensus 112 ei~~lR~~v~~l~~ek~~l~le~~~ 136 (147)
......+.|+++.+.|+.|+.++..
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4456667777777788877777643
No 150
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=33.22 E-value=64 Score=20.51 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=29.7
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhc
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESH 98 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~ 98 (147)
....|+.-+++.--+|..++..-..||.+|+.|....
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ag 45 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAG 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHHhcC
Confidence 3566777788888888889998899999999888644
No 151
>3utk_A Lipoprotein OUTS; nested (perpendicular) alpha-helical hairpins, protein trans pilot protein; 1.65A {Dickeya dadantii} PDB: 3uym_A
Probab=32.96 E-value=27 Score=24.91 Aligned_cols=22 Identities=5% Similarity=0.356 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhhHHHHHhhhhh
Q psy20 58 QEKNELKNLNDRLAQYIELVQK 79 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~ 79 (147)
-++...+.||..++.||+..|.
T Consensus 110 p~~~KC~~LN~~l~pFI~~~r~ 131 (133)
T 3utk_A 110 PKATQCSSFNRTMTPFLDAMRT 131 (133)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHhc
Confidence 4567789999999999998764
No 152
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.83 E-value=3.3e+02 Score=28.93 Aligned_cols=78 Identities=9% Similarity=0.148 Sum_probs=36.6
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
++...+.+|..--+++..||+.-..|+.+.......+. .....-...+..+..+.+.|..+..|+.+=..++..+..+
T Consensus 2022 ~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~-~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~ 2099 (3245)
T 3vkg_A 2022 AANELKLKQDEIVATITALEKSIATYKEEYATLIRETE-QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQ 2099 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 34444555555555555566555555555554433321 0111112233444455555555555555544444444433
No 153
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.36 E-value=1e+02 Score=19.97 Aligned_cols=15 Identities=7% Similarity=0.326 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy20 111 KEIEDIRKALDRESS 125 (147)
Q Consensus 111 ~ei~~lR~~v~~l~~ 125 (147)
++|..|++++..-..
T Consensus 54 ~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 54 AEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH
Confidence 344444444443333
No 154
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=32.08 E-value=59 Score=21.83 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhh
Q psy20 113 IEDIRKALDRESSSKS--------ALAIEKRRLLDELLDLK 145 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~--------~l~le~~~l~~~~ed~r 145 (147)
|.++|.+||.+-.+-. .|..+.-.+..++-.+|
T Consensus 5 L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K 45 (104)
T 2gtv_X 5 LAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIK 45 (104)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHH
Confidence 5555666655555544 44444444444444443
No 155
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.91 E-value=1.4e+02 Score=21.50 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q psy20 110 EKEIEDIRKALDR 122 (147)
Q Consensus 110 e~ei~~lR~~v~~ 122 (147)
+.++++|-..+|+
T Consensus 85 e~ElEeLTasLFe 97 (154)
T 2ocy_A 85 NKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 156
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.53 E-value=82 Score=18.55 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
++.|+.++.++......|..+++.++..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544444444444444444443
No 157
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.34 E-value=44 Score=19.94 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=12.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHH
Q psy20 74 IELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~ 95 (147)
++-+..|..+|..|..++..+.
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777776554
No 158
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.00 E-value=1.3e+02 Score=20.71 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=7.6
Q ss_pred HHHHHHhhHHHHHhhh
Q psy20 62 ELKNLNDRLAQYIELV 77 (147)
Q Consensus 62 ~mq~LNdRLA~YIekV 77 (147)
.|+-=+++|-..|+++
T Consensus 19 ~Lkreie~lk~ele~l 34 (120)
T 3i00_A 19 RLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555544
No 159
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.93 E-value=78 Score=22.22 Aligned_cols=25 Identities=4% Similarity=0.098 Sum_probs=15.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 72 QYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 72 ~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
...++|..|..+++.|+.++..++.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~ 53 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKS 53 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655543
No 160
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.71 E-value=2.1e+02 Score=23.62 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=3.9
Q ss_pred HHHHHHHHhh
Q psy20 135 RRLLDELLDL 144 (147)
Q Consensus 135 ~~l~~~~ed~ 144 (147)
..+..++.++
T Consensus 48 r~l~n~~~~l 57 (412)
T 3u06_A 48 KELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3333334443
No 161
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.82 E-value=1.8e+02 Score=21.90 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=9.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~~l~ 95 (147)
+++-.|..+|..|+..++.+.
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~ 159 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQ 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 162
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.22 E-value=54 Score=21.97 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=25.9
Q ss_pred HHHHHHHHhhHHHHHhhhhh-hHHHHHHHHHHHHHHHh
Q psy20 60 KNELKNLNDRLAQYIELVQK-LQNDKASLEYSLYSIEE 96 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~-LE~~N~~Le~ki~~l~~ 96 (147)
..+|...-+||..-++.|.. ||.+.+.|+.+|..+..
T Consensus 31 QqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 31 QQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888876 88888888888876543
No 163
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=29.16 E-value=1.2e+02 Score=20.56 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy20 119 ALDRESSSKSALAIEKRRLLDELLDLKN 146 (147)
Q Consensus 119 ~v~~l~~ek~~l~le~~~l~~~~ed~r~ 146 (147)
++.....+...|...+..+..+++.+|+
T Consensus 90 ~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 90 KYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3333444455666677777777777663
No 164
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=28.79 E-value=15 Score=28.49 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLY 92 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~ 92 (147)
+|-++|+.-|..|...+.+...|+++|..|...+.
T Consensus 26 ~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 26 TENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666677777777777777778877765543
No 165
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=28.59 E-value=69 Score=20.23 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHH
Q psy20 79 KLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSS 126 (147)
Q Consensus 79 ~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~e 126 (147)
.|.+.|..|...+.++..... ....-+..++......|..|..+..+
T Consensus 23 AlkqsNq~mkeR~eeL~~wqe-kQkeErefl~~kf~EAr~lv~~L~~E 69 (70)
T 3brv_B 23 AIRQSNQILRERCEELLHFQA-SQREEKEFLMCKFQEARKLVERLGLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 466778887777766644432 12223455666677778777776654
No 166
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.30 E-value=97 Score=18.38 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
..||+++.+....-.+|+-|-.+++..+..+.
T Consensus 20 shLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 20 SNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 34555555555555566666666665555443
No 167
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=28.29 E-value=89 Score=18.64 Aligned_cols=16 Identities=38% Similarity=0.196 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy20 127 KSALAIEKRRLLDELL 142 (147)
Q Consensus 127 k~~l~le~~~l~~~~e 142 (147)
|..|.+||..++.-++
T Consensus 37 K~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 37 KMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHc
Confidence 4556666666665544
No 168
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.99 E-value=1.1e+02 Score=19.02 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=32.3
Q ss_pred hhHhHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALA 131 (147)
Q Consensus 55 ~r~~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~ 131 (147)
+...|+.-+..+|+.|...-.-|=.+. ..+. ....+-..--.+|..|+.++..+..++..|.
T Consensus 16 hn~~Er~RR~~in~~f~~Lr~lvP~~~--------------~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 16 HNALERKRRDHIKDSFHSLRDSVPSLQ--------------GEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSGGGT--------------TSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCcCCC--------------CCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888875544333221 0111 1111222224466677766666666555443
No 169
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=27.82 E-value=1.2e+02 Score=19.09 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=20.3
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHH
Q psy20 60 KNELKNLNDRLAQYIELVQKLQN 82 (147)
Q Consensus 60 Ke~mq~LNdRLA~YIekVR~LE~ 82 (147)
|..|+.|..-...++++|..||.
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999987
No 170
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=27.58 E-value=22 Score=18.94 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=12.1
Q ss_pred HhhHHHHHhhhhhh
Q psy20 67 NDRLAQYIELVQKL 80 (147)
Q Consensus 67 NdRLA~YIekVR~L 80 (147)
||-|++-|.|||++
T Consensus 7 ~daFadA~~RaRQI 20 (31)
T 2kxh_B 7 NDAFKDALQRARQI 20 (31)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 78899999999887
No 171
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.57 E-value=2.6e+02 Score=23.02 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=44.8
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 68 DRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLL 138 (147)
Q Consensus 68 dRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~ 138 (147)
|.+...-++-|.+..+-..|..+.+.+...-+...........+++..++.+|..+..+-..++.++..+.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666677776666655443211112233456778889999888888888888877654
No 172
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=27.57 E-value=23 Score=24.37 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=8.2
Q ss_pred HhhhhhhHHHHHHHHH
Q psy20 74 IELVQKLQNDKASLEY 89 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ 89 (147)
|+-|++|..++..|..
T Consensus 73 ieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 73 VDYIRKLQREQQRAKD 88 (118)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555543
No 173
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=27.53 E-value=32 Score=26.62 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q psy20 78 QKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 78 R~LE~~N~~Le~ki~~l~~ 96 (147)
..|.++|+.|..++..++.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~ 40 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQ 40 (255)
T ss_dssp ----CTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555443
No 174
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.41 E-value=1.4e+02 Score=19.95 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 120 LDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 120 v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
|-+...+++.++...+.|+.++.|
T Consensus 71 Va~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 71 VADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666667777777776655
No 175
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=26.97 E-value=92 Score=20.77 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=32.2
Q ss_pred HHHhhhhh---hHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 72 QYIELVQK---LQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 72 ~YIekVR~---LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
-+|+||-. .-.+-+.|..++..++.....-...|. ++-...|++++|.+..|-..+..++...+.
T Consensus 17 ~~~~~v~p~s~~~~~~~~lk~E~~~lk~E~~stSaQDE---FAKWAKL~Rk~DKl~~ele~l~~~L~s~ks 84 (94)
T 3vlc_E 17 KWISKFAPGNELSKKYLAKVKERHELKEFNNSISAQDN---YAKWTKNNRKLDSLDKEINNLKDEIQSENK 84 (94)
T ss_dssp ---------CCTTHHHHHHHHHHHHHHHHHTTSCTTTC---HHHHHHHHHHHHHHHHHTTTHHHHTTTTHH
T ss_pred HHHHHhCcccHhHHHHHHHHHHHHHHHHHHhccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 223334556666666665542122222 345568888998888776666555544333
No 176
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=26.42 E-value=2.4e+02 Score=22.33 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=10.6
Q ss_pred HHHHHHHhhHHHHHhhhhh
Q psy20 61 NELKNLNDRLAQYIELVQK 79 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~ 79 (147)
..+..|-.+|+.|.+++|.
T Consensus 158 ~~~eeLr~~L~py~eeLr~ 176 (307)
T 2l7b_A 158 RDADDLQKRLAVYQAGARE 176 (307)
T ss_dssp HHHHHHHHHHHHHTSCCSS
T ss_pred hhHHHHHHHHhhHHHHHHH
Confidence 3455555566666655554
No 177
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.27 E-value=85 Score=17.03 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~ 140 (147)
+++-..|+++..++..++-|+..++.-
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566777777777777777666554
No 178
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=26.20 E-value=50 Score=18.81 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=9.7
Q ss_pred HHhhHHHHHhh
Q psy20 66 LNDRLAQYIEL 76 (147)
Q Consensus 66 LNdRLA~YIek 76 (147)
.|.+|-.|||+
T Consensus 16 ~n~~Le~YID~ 26 (42)
T 2d7c_C 16 INFRLQDYIDR 26 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78999999996
No 179
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.41 E-value=2.9e+02 Score=22.97 Aligned_cols=74 Identities=9% Similarity=0.118 Sum_probs=45.1
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 61 NELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 61 e~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
+++..|.++.-..+.++..|..+...+..+|..++... .......++...++.+|..+..+...++.++..+..
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG-----EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555443221 222334667888999999998888888888876543
No 180
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.35 E-value=1.4e+02 Score=19.20 Aligned_cols=34 Identities=9% Similarity=0.287 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLD 143 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed 143 (147)
..+|..||-+|+.+..+...+.-....+-.++|.
T Consensus 33 q~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 33 QSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777666666555555555543
No 181
>3sol_A Type II secretion pathway related protein; general secretory pathway, protein transport, pilotin; 1.90A {Escherichia coli}
Probab=25.23 E-value=48 Score=22.15 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhhHHHHHhhh
Q psy20 58 QEKNELKNLNDRLAQYIELV 77 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekV 77 (147)
-++..++.||..++.||++.
T Consensus 73 p~~~kC~~Lnr~l~pFI~~~ 92 (94)
T 3sol_A 73 PEYIKCREFNRRLVPFIGEL 92 (94)
T ss_dssp CHHHHHHHHHHHTHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 45677889999999999864
No 182
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=24.96 E-value=1.3e+02 Score=19.00 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=25.8
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
.+.+|+..=-..++|+-.||+.-..||..+..+..
T Consensus 29 Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~ 63 (72)
T 2xu6_A 29 EVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35666666666778888888888888888876644
No 183
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.86 E-value=2.8e+02 Score=22.54 Aligned_cols=6 Identities=0% Similarity=0.086 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy20 113 IEDIRK 118 (147)
Q Consensus 113 i~~lR~ 118 (147)
++.+++
T Consensus 444 ~~~~~~ 449 (487)
T 3oja_A 444 ETQLAE 449 (487)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 184
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.85 E-value=1.4e+02 Score=18.94 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSL 91 (147)
Q Consensus 80 LE~~N~~Le~ki 91 (147)
||+.-..||.++
T Consensus 12 le~Ri~~LE~kl 23 (78)
T 3efg_A 12 LEARLVELETRL 23 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 185
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.65 E-value=1.5e+02 Score=19.29 Aligned_cols=30 Identities=27% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 115 DIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 115 ~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
.-|..+++...+|..|..++..+..++..+
T Consensus 36 ~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~l 65 (83)
T 1uii_A 36 KRRKALYEALKENEKLHKEIEQKDNEIARL 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666555555554443
No 186
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=24.48 E-value=70 Score=20.60 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q psy20 110 EKEIEDIRKALDRESSSK-SALAIEKRRLLDELLDLK 145 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek-~~l~le~~~l~~~~ed~r 145 (147)
.++|..|++++++..-.+ +.+++-+.....++||++
T Consensus 16 aAei~~Lda~l~e~~ppna~elEqLLV~fdlAAdDLk 52 (85)
T 3rq9_A 16 AARTRELDAQLQNDDPQNAAELEQLLVGYDLAADDLK 52 (85)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCcchhHHHHhhhHHhhHHHH
Confidence 345555555554433333 223333334444444443
No 187
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.44 E-value=1.1e+02 Score=17.78 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy20 122 RESSSKSALAIEKRRLLDE 140 (147)
Q Consensus 122 ~l~~ek~~l~le~~~l~~~ 140 (147)
.+..|++.|+.++.++..+
T Consensus 28 rlendnanlekdianlekd 46 (56)
T 3he4_A 28 RLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHHHH
Confidence 3344444444444444443
No 188
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.24 E-value=83 Score=25.93 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q psy20 80 LQNDKASLE 88 (147)
Q Consensus 80 LE~~N~~Le 88 (147)
|+++...|+
T Consensus 15 l~~~~~~l~ 23 (403)
T 4etp_A 15 LKEKIAALK 23 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 189
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.08 E-value=1.6e+02 Score=19.35 Aligned_cols=11 Identities=0% Similarity=-0.076 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy20 83 DKASLEYSLYS 93 (147)
Q Consensus 83 ~N~~Le~ki~~ 93 (147)
+|..|+..+.+
T Consensus 20 ~~~~LE~~l~e 30 (95)
T 3mov_A 20 ESRACLERIQE 30 (95)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 190
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.92 E-value=1.8e+02 Score=19.98 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy20 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDL 144 (147)
Q Consensus 110 e~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~ 144 (147)
...|..|...++.-...+..+..+.+.++.+++++
T Consensus 46 ~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 46 KGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333333333334444444444433
No 191
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.53 E-value=1.1e+02 Score=17.37 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHh
Q psy20 79 KLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 79 ~LE~~N~~Le~ki~~l~~ 96 (147)
.||+.-+.|+.+..+|.+
T Consensus 7 eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555544443
No 192
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=23.38 E-value=1.5e+02 Score=18.97 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=17.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy20 70 LAQYIELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 70 LA~YIekVR~LE~~N~~Le~ki~~l~~ 96 (147)
++..=+++..|......|+.++..+..
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666544
No 193
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.27 E-value=1.6e+02 Score=21.85 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=16.2
Q ss_pred hHHHHHHHH----HhhHHHHHhhhhhhHHHHHHHHHHHHH
Q psy20 58 QEKNELKNL----NDRLAQYIELVQKLQNDKASLEYSLYS 93 (147)
Q Consensus 58 ~EKe~mq~L----NdRLA~YIekVR~LE~~N~~Le~ki~~ 93 (147)
+-.+.++.| -|+.+..-+++..|..+|..|..+++.
T Consensus 138 ~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 138 NPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 233333334444455555555444443
No 194
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=23.00 E-value=43 Score=20.10 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q psy20 76 LVQKLQNDKASLEYSLYSI 94 (147)
Q Consensus 76 kVR~LE~~N~~Le~ki~~l 94 (147)
+|..||++...|+..|..+
T Consensus 50 ~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 50 RNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666667777666544
No 195
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.95 E-value=1.6e+02 Score=18.92 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 113 i~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
-.||=..||+++.++.-+..|+..++.....+.
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888877777665553
No 196
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=22.62 E-value=1.6e+02 Score=20.73 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=0.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHh
Q psy20 74 IELVQKLQNDKASLEYSLYSIEE 96 (147)
Q Consensus 74 IekVR~LE~~N~~Le~ki~~l~~ 96 (147)
=||++.+|+.+..++.+..+++.
T Consensus 29 eek~~~~e~~~~~~~~Elee~kq 51 (130)
T 3cl3_D 29 EGRARAASEQARQLESEREALQQ 51 (130)
T ss_dssp ----------------------C
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 35667777777777777666544
No 197
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=22.56 E-value=84 Score=19.99 Aligned_cols=11 Identities=0% Similarity=0.347 Sum_probs=4.9
Q ss_pred HhHHHHHHHHH
Q psy20 57 RQEKNELKNLN 67 (147)
Q Consensus 57 ~~EKe~mq~LN 67 (147)
++.++-++.+|
T Consensus 16 W~nRe~ie~is 26 (73)
T 3pp5_A 16 WEQREFIEDMS 26 (73)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 198
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.49 E-value=3.1e+02 Score=22.58 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=7.5
Q ss_pred hhhhhhHHHHHHHHHHHH
Q psy20 75 ELVQKLQNDKASLEYSLY 92 (147)
Q Consensus 75 ekVR~LE~~N~~Le~ki~ 92 (147)
+++..|+++++.+..++.
T Consensus 17 ~~~~~l~~~~~~~~~~~~ 34 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELE 34 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 199
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=22.00 E-value=3.7e+02 Score=22.83 Aligned_cols=73 Identities=7% Similarity=-0.031 Sum_probs=41.6
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 62 ELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139 (147)
Q Consensus 62 ~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~ 139 (147)
++..|.++.-..+-++..|..+--.+..+|..++... .......+++..++.+|..+..+-..++.++..+..
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~-----~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK-----EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444554443221 122334567889999999998888888888876543
No 200
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=21.88 E-value=1.6e+02 Score=18.61 Aligned_cols=45 Identities=29% Similarity=0.329 Sum_probs=29.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHH
Q psy20 70 LAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDR 122 (147)
Q Consensus 70 LA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~ 122 (147)
||.| .|.+.||.+.-.|+.- +.+ -+..++..|..-+.+++..+++
T Consensus 16 LapY-~KAKTLERqvYEL~ki----qdk---LPeklkaeYk~KL~~tk~~Ld~ 60 (78)
T 2lhr_A 16 LAPY-HKAKTLERQVYELEKL----QEK---LPEKYKAEYKKKLDQTRVELAD 60 (78)
T ss_dssp HHHH-HHCCSHHHHHHHHHHH----HHH---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhH-HHhhHHHHHHHHHHHH----HHH---hhHHHHHHHHHHHHHHHHHHHH
Confidence 5666 6778898887776532 222 1456677888888777776654
No 201
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=21.81 E-value=3.1e+02 Score=21.96 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=13.6
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 63 LKNLNDRLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 63 mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
+..|+..++..++.-..|.++-..|..+|..+.
T Consensus 5 ~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~ 37 (302)
T 3ibp_A 5 IASLSDSVSNAREERMALRQEQEQLQSRIQSLM 37 (302)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554455555555555554443
No 202
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=21.62 E-value=58 Score=21.41 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHhhHHH
Q psy20 57 RQEKNELKNLNDRLAQ 72 (147)
Q Consensus 57 ~~EKe~mq~LNdRLA~ 72 (147)
.++|++|-.||++|+.
T Consensus 59 sqKk~eL~~Ln~kl~~ 74 (88)
T 2pjw_H 59 AKEKEDMLSLRQVLAN 74 (88)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5889999999999984
No 203
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.56 E-value=2.8e+02 Score=21.39 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy20 107 AASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141 (147)
Q Consensus 107 ~~ye~ei~~lR~~v~~l~~ek~~l~le~~~l~~~~ 141 (147)
...+..+..++.++..+..+...++.+++.++..+
T Consensus 118 ~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 118 NTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555666666555555555555555544443
No 204
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.55 E-value=2.4e+02 Score=21.35 Aligned_cols=32 Identities=31% Similarity=0.263 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy20 114 EDIRKALDRESSSKSALAIEKRRLLDELLDLK 145 (147)
Q Consensus 114 ~~lR~~v~~l~~ek~~l~le~~~l~~~~ed~r 145 (147)
+.-|..|++...+|..|..++..+..++..++
T Consensus 104 E~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~Lk 135 (209)
T 2wvr_A 104 EKRRKALYEALKENEKLHKEIEQKDNEIARLK 135 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677777777777777666665555443
No 205
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=21.53 E-value=99 Score=19.75 Aligned_cols=11 Identities=0% Similarity=0.139 Sum_probs=5.0
Q ss_pred HhHHHHHHHHH
Q psy20 57 RQEKNELKNLN 67 (147)
Q Consensus 57 ~~EKe~mq~LN 67 (147)
++.++-++.+|
T Consensus 16 W~nRe~ie~in 26 (75)
T 3p8c_E 16 WANREYIEIIT 26 (75)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 206
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.48 E-value=1.6e+02 Score=20.81 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=25.2
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHH
Q psy20 69 RLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRES 124 (147)
Q Consensus 69 RLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~ 124 (147)
.+..+...+..++.+...|..++..-+.... .........+.++++|-+.+++-.
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~-~aE~~~~~ie~ElE~LTasLFeEA 87 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRT-KAEEEADKLNKEVEDLTASLFDEA 87 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHH-HHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555544322222 111223334666666666666533
No 207
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.36 E-value=1.9e+02 Score=19.35 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=17.1
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy20 69 RLAQYIELVQKLQNDKASLEYSLYSIE 95 (147)
Q Consensus 69 RLA~YIekVR~LE~~N~~Le~ki~~l~ 95 (147)
.+-....+|-.||.+|..|..++..|.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777766665543
No 208
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.73 E-value=2.1e+02 Score=19.46 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHHHHHHHHHH-------HHHH
Q psy20 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSS-------KSAL 130 (147)
Q Consensus 58 ~EKe~mq~LNdRLA~YIekVR~LE~~N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~~v~~l~~e-------k~~l 130 (147)
.=+.++|.|.-.+.+.-.....||.....++.....-.... ...+ ...+.++..+|..+.....+ |..|
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~---q~~i-~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 115 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDA---RNKL-AELEEALQKAKQDMARLLREYQELMNTKLAL 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777777777777777777777777666554322111 1112 23466666666655544433 3445
Q ss_pred HHHHHHHHH
Q psy20 131 AIEKRRLLD 139 (147)
Q Consensus 131 ~le~~~l~~ 139 (147)
.+||..++.
T Consensus 116 d~EIatYRk 124 (129)
T 3tnu_B 116 DVEIATYRK 124 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 209
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=20.31 E-value=31 Score=20.70 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhcCCcccCchHHHHHHHHHHHH
Q psy20 84 KASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRK 118 (147)
Q Consensus 84 N~~Le~ki~~l~~~~~~~~~~~~~~ye~ei~~lR~ 118 (147)
+..|..++..+--..++-...-+.+|++-|..++.
T Consensus 8 d~eLr~~L~~~G~~~GPIt~sTRklYeKKL~~l~~ 42 (53)
T 1jei_A 8 DTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYET 42 (53)
T ss_dssp HHHHHHHHSSSCCSCCCCCSGGGHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHH
Confidence 44666677666666666566778999998877654
No 210
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=20.29 E-value=1.3e+02 Score=20.01 Aligned_cols=17 Identities=6% Similarity=-0.078 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHh
Q psy20 80 LQNDKASLEYSLYSIEE 96 (147)
Q Consensus 80 LE~~N~~Le~ki~~l~~ 96 (147)
-|.+.+.|.-+|+.|..
T Consensus 50 ~E~~IRdLNDEINkL~r 66 (92)
T 1x4t_A 50 GEFRIRDLNDEINKLLR 66 (92)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 35555555666655443
No 211
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.04 E-value=2e+02 Score=19.05 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSLYSI 94 (147)
Q Consensus 80 LE~~N~~Le~ki~~l 94 (147)
|.++-..|...+..|
T Consensus 25 Lq~~~~~L~~~f~~L 39 (94)
T 3fx7_A 25 LREEVNSLSNHFHNL 39 (94)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcc
Confidence 344445566666655
No 212
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.03 E-value=89 Score=18.36 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHH
Q psy20 80 LQNDKASLEYSLYSI 94 (147)
Q Consensus 80 LE~~N~~Le~ki~~l 94 (147)
||.+...||..+..+
T Consensus 49 L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 49 LQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
Done!