RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy20
(147 letters)
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 67.6 bits (166), Expect = 5e-16
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIE 114
+R EK EL+ LNDR A I+ V+ L+ L +E+ ++ E+E+
Sbjct: 3 TRTNEKVELQELNDRFANLIDKVRFLEQQNKILL---AELEQLKGQGKSRLGDLYEEEMR 59
Query: 115 DIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
++R+ +D+ ++ K+ + +E+ L ++++ L+ K
Sbjct: 60 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 44.4 bits (105), Expect = 4e-06
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 56 RRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKV------KAAS 109
+ ++K + D + + KL ++ LE + + + E +K K
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
E I ++ L +E S+ L KR+L E DL +
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Score = 34.0 bits (78), Expect = 0.011
Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDI 116
++ L ++A+ + K + + + L KK++ E I D+
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL-ESHISDL 1128
Query: 117 RKALDRESSSKSALAIEKRRLLDELLDLKNK 147
++ L+ E ++++ +KR L +EL LK +
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
Score = 33.7 bits (77), Expect = 0.019
Identities = 13/91 (14%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDI 116
+ E + + Q+L+ +E + EE + + + K ++++ D+
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER-SQQLQAEKKKMQQQMLDL 960
Query: 117 RKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+ L+ E +++ L +EK ++ +++
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Score = 31.0 bits (70), Expect = 0.12
Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 56 RRQEKNELK--------------NLNDRLAQYIELVQKLQNDKASLEYSLYSIEES---- 97
+E+ + +L ++L + QKLQ +K + + + +E+
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 98 --HTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+ K + E+ + D+ L E L K + + +L+ +
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 3e-04
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 37/157 (23%)
Query: 27 SEVREEPPQPQPQ-----SQPPRP---GSPLSPTIISRRQEKNELKN--LNDRLAQYIEL 76
S ++ E QP Q R + +SR Q +L+ L R A+ + +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 77 ------------VQKLQNDK--ASLEYSLY--SIEESHTTE-----FKKVKAASEKEIED 115
+ + K +++ ++ +++ ++ E +K+ +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 116 IRKALDRESSSKSALAIEKRRLLDE------LLDLKN 146
++ E RRLL LL L N
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Score = 34.1 bits (77), Expect = 0.011
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 23/86 (26%)
Query: 59 EKNELKNLNDRLAQYIELVQKLQND-KASLEYSLYSIEESHTTEFKKVKAASEKEIEDIR 117
E E + QY +++ ++ + + +++ + K +EI+ I
Sbjct: 10 ETGEHQY------QYKDILSVFEDAFVDNFD--CKDVQDMPKSILSK------EEIDHII 55
Query: 118 KALDRESSSKSALAIEKRRLLDELLD 143
+ D S + RL LL
Sbjct: 56 MSKDAVSGT--------LRLFWTLLS 73
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo
sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Length = 39
Score = 34.3 bits (79), Expect = 0.001
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 58 QEKNELKNLNDRLAQYIELVQKLQNDKASLE 88
EK EL+ LNDR A YI+ V+ L+ L
Sbjct: 3 NEKVELQELNDRFANYIDKVRFLEQQNKILL 33
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 35.9 bits (83), Expect = 0.003
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 55 SRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASE---K 111
+ E +L++ +RL E + N SL+ + + + + K E K
Sbjct: 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016
Query: 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
+ + + + L EK L + D +
Sbjct: 1017 YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052
Score = 33.9 bits (78), Expect = 0.013
Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVK------AASE 110
++E +LK + +Y +L L+N L+ + + + + +K+ +
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962
Query: 111 KEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
+++ + L L +E+ L+
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.005
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 33/109 (30%)
Query: 39 QSQPPRPGSPLSPTIISRRQEKNE--------LKNLN-DRLAQYIELV-QKLQNDKA--- 85
+ P + L P+I+ E NE + NL +++ Y+ L K
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 86 SLE------------YSLYSIEESHTTEFKKVKAASEKEIEDI----RK 118
SL SLY + +K KA S + I RK
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLN----LTLRKAKAPSGLDQSRIPFSERK 413
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.016
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 14/37 (37%)
Query: 59 EKNELKNLNDRLAQYIELVQKLQND-------KASLE 88
EK LK L L Y +D KA++E
Sbjct: 18 EKQALKKLQASLKLY-------ADDSAPALAIKATME 47
>2y9w_A Tyrosinase, polyphenol oxidase; oxidoreductase,
copper-containing, pigmentation, type-3 COPP protein;
HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_A
Length = 391
Score = 33.0 bits (74), Expect = 0.022
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 38 PQSQPPRPGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEES 97
+S P G P R + + Y+ +Q LQ S S + +
Sbjct: 3 KKSLMPLVGIPGEIKN---RLNILDFVKNDKFFTLYVRALQVLQARDQSDYSSFFQLGGI 59
Query: 98 H 98
H
Sbjct: 60 H 60
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein,
iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Length = 207
Score = 32.1 bits (73), Expect = 0.039
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 1 MSGRSKRGATPAKTPSASRGSSSRQTSEVREEPPQPQPQSQPPRPGSPLSPTIISRRQEK 60
M+ +S + +KT + + Q + + +++
Sbjct: 1 MTKKSTKSEAASKTKKSGVPETGAQG---VRAGGADHADAAHLGTVNNALVNHHYLEEKE 57
Query: 61 NE--LKNLNDRLAQYIELVQKLQN 82
+ + L LA I L K +
Sbjct: 58 FQTVAETLQRNLATTISLYLKFKK 81
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 29.9 bits (68), Expect = 0.097
Identities = 8/36 (22%), Positives = 25/36 (69%)
Query: 112 EIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
E+ ++R+ +D+ ++ K+ + +E+ L ++++ L+ K
Sbjct: 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 30.3 bits (69), Expect = 0.12
Identities = 9/38 (23%), Positives = 27/38 (71%)
Query: 110 EKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
E+E+ ++R+ +D+ ++ K+ + +E+ L ++++ L+ K
Sbjct: 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 56
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.5 bits (66), Expect = 0.46
Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 53 IISRRQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKE 112
+ E++ L + + ++ +LE S+ + +E + T ++ + E
Sbjct: 2006 AEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE-TEQIKTE 2064
Query: 113 IEDIRKALDRESSSKSALAIEKRRLLDELLDLKNK 147
++ +DR + L E+ R + + +
Sbjct: 2065 SSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQ 2099
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine
oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN;
2.45A {Emericella nidulans}
Length = 797
Score = 29.1 bits (64), Expect = 0.65
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 1 MSGRSKRGATPAKTPSASRGSSSRQTSEVREEPPQPQPQSQPPRPGSPLSP-------TI 53
+ GRS + T P + +S Q P + ++ L+
Sbjct: 29 LVGRSNQHITHQSRPYTNEYASPCQI------TPPQEIKAPKENVWYGLTDDETADVAKW 82
Query: 54 ISRRQEKN----ELKNLNDRLAQYIEL 76
+ R E N E D IEL
Sbjct: 83 LFGRPELNLTTTENAGEWDNTIALIEL 109
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS;
2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Length = 211
Score = 27.9 bits (62), Expect = 0.97
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 9 ATPAKTPSASRGSSSRQTSEVREEPPQPQPQSQPPRPGSPLSPTIISRRQEKNELKNLND 68
+T TP+ + G S+ Q + P + K ++ L +
Sbjct: 5 STNVNTPAPNTGQSTAQNTNTASPLPY----------NRATTLPAAGTEDLKKSVQALQN 54
Query: 69 RLAQYIELVQKLQN 82
L + L + +
Sbjct: 55 TLTELQALQLQTKQ 68
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.0 bits (62), Expect = 1.1
Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 48 PLSPTIIS--------RRQEKNEL------KNLNDRLAQYIELVQKLQNDKASLEYSL-- 91
PLSP +++NEL + ++ + +E V N +A+ E
Sbjct: 87 PLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEK 146
Query: 92 -YSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDEL 141
+ I T + K+ + ++ + AL +E ++ + ++ E
Sbjct: 147 QFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTH---AETVMVKEY 194
Score = 27.2 bits (60), Expect = 2.1
Identities = 11/77 (14%), Positives = 29/77 (37%)
Query: 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDI 116
+++ + LN + Y +++ + L +L T + +I+ +
Sbjct: 142 IEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDAL 201
Query: 117 RKALDRESSSKSALAIE 133
+ A++ E AI+
Sbjct: 202 KNAIEVERDGMQEEAIQ 218
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled
coil, C-type lectin, carbohydrate recognition domain;
2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 182
Score = 27.9 bits (62), Expect = 1.1
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 32 EPPQPQPQSQPPRPGSPLSPTIISRRQEKNELKNLNDRLAQYIELVQKLQN 82
EPP +P+ ++ + + K+ L L+ +A ++ Q LQ
Sbjct: 2 EPPTQKPKKIVNAKKDVVNTKMF--EELKSRLDTLSQEVAL-LKEQQALQT 49
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Length = 231
Score = 27.5 bits (61), Expect = 1.6
Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 94 IEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRR 136
I + +++K AS +++ + K +D++ ++A+A EK
Sbjct: 169 IMRKNRGILRELKDASCRDMLTVLKTVDQD-LLRAAIAGEKFA 210
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 27.6 bits (61), Expect = 1.8
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 2 SGRSKRGATPAKTPSASRGSSSRQTSEVREEPPQ---PQPQSQPPRPGSPLSP 51
+ + A P + Q + PPQ P PQ PP+ P +P
Sbjct: 387 AYPPQGYAPPPQGYPPQ--GYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A
{Streptococcus pyogenes}
Length = 199
Score = 26.7 bits (59), Expect = 2.6
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 22 SSRQTSEVREEPPQPQPQSQPPRPGSPLSPTIISRRQEKNE--LKNLNDRLAQYIELVQK 79
+S + P + + ++ I + KNE LN +A
Sbjct: 2 ASMTGGQQMGRDPNSMTNTLVENIYASVTHNISKKEASKNEKTKAVLNQAVADLSVAASI 61
Query: 80 LQN 82
+
Sbjct: 62 VHQ 64
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 26.8 bits (60), Expect = 2.9
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 31 EEPPQPQPQSQPPRPGSPLSPTIISRRQEKNELKNLNDRLAQYIE 75
EE P+ + + G P+ P ++S R L+ ++A+ +E
Sbjct: 429 EEAPEREHRETTAHDGRPV-PLVVSARSTA-ALRAQAAQIAELLE 471
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 26.8 bits (60), Expect = 3.2
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 80 LQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLD 139
+ + A+L + + + T E + E+E ++ L + + E++ L +
Sbjct: 1 MGSMHAALSTEVVHLRQR-TEELLRCNEQQAAELETCKEQLFQSNM-------ERKELHN 52
Query: 140 ELLDLK 145
++DL+
Sbjct: 53 TVMDLR 58
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 26.7 bits (58), Expect = 4.2
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 1 MSGRSKRGATPAKTPSASRGSSSRQTSEVREEPPQPQPQSQPPRPGSPLSP 51
MS KR A+ + +Q P Q P P G
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQ-------PAQFMPPQDPAAAGMSYGQ 44
Score = 25.9 bits (56), Expect = 7.1
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 8 GATPAKTPSASRGSSSRQTSEVREEPPQPQPQSQPPRPGSPLSP 51
G + + +G+ + P Q Q Q + + ++
Sbjct: 39 GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMND 82
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase,
iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB:
2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A*
2xkq_A*
Length = 165
Score = 25.8 bits (57), Expect = 4.3
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 46 GSPLS-PTIISRRQEKNELKNLNDRLAQYIELVQKLQN 82
GSP + R + LN +A L
Sbjct: 1 GSPAEIASFSPRPSLADSKAVLNQAVADLSVAHSILHQ 38
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural
genomics, PSI-biology, protei structure initiative; NMR
{Shigella flexneri}
Length = 123
Score = 25.7 bits (56), Expect = 4.4
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 56 RRQEKNELKNLNDRL--AQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
+ EKNE+K L+DRL ++ + L E +K KA E EI
Sbjct: 5 KEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKY------------AELEKEKATLEAEI 52
Query: 114 EDIRKALDRESSSKS 128
+R+ ++ S ++
Sbjct: 53 ARLREVHSQKLSKEA 67
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 25.6 bits (56), Expect = 5.1
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 57 RQEKNELKNLNDRLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIEDI 116
+ + K L +++ ++ LQ + + +L EE K K E +++++
Sbjct: 30 EKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKN-KIQLEAKVKEM 88
Query: 117 RKALDRESSSKSALAIEKRRLLDELLDLKNK 147
K L+ E + L +KR+L DE +LK
Sbjct: 89 NKRLEDEEEMNAELTAKKRKLEDECSELKRD 119
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint
center for STR genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.30A {Anabaena
variabilis} SCOP: d.326.1.1
Length = 112
Score = 25.1 bits (55), Expect = 5.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 68 DRLAQYIELVQKLQNDKASLEYSLYSIEE 96
D+L +Y ELV+KL + AS + S +E
Sbjct: 3 DKLVKYQELVKKLLTNYASDDVSDQDVEV 31
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal
transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Length = 156
Score = 25.4 bits (56), Expect = 6.1
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 50 SPTIISRRQEKNELKNLNDRLAQYIELVQKLQN 82
+P + R + L +A L KL N
Sbjct: 2 APGVPDARAIAAICEQLRQHVADLGVLYIKLHN 34
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 25.4 bits (55), Expect = 8.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 33 PPQPQPQSQPPRPGSPLSP 51
PP P PP G+P+
Sbjct: 197 PPMGPPMGIPPGRGTPMGM 215
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription,
resistance, antibiotic; 2.90A {Streptomyces lividans}
Length = 108
Score = 24.5 bits (54), Expect = 9.0
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 113 IEDIRKALDRESSSKSALAIEKRRLLDE 140
++++ LD ++ A + LL
Sbjct: 61 LDEVAALLDDPAADPRAHLRRQHELLSA 88
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 25.5 bits (55), Expect = 9.5
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 9 ATPAKTPSASRG-SSSRQTSEVREEPPQP---QPQSQPPRPGSP 48
+ PSAS ++S + + P P P G+P
Sbjct: 18 GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas
gingivalis}
Length = 303
Score = 25.1 bits (54), Expect = 9.5
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 69 RLAQYIELVQKLQNDKASLEYSLYSIEESHTTEFKKVKAASEKEIED-IRKALDRESSSK 127
R +L ++YS + ++ F ++ E R+ + + +
Sbjct: 18 RYGSLKQLDGIGPGGDTIMDYS---VYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGR 74
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 25.0 bits (53), Expect = 9.9
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 4 RSKRGATPAKTPSASRGSSSRQTSEVREEPPQPQPQSQPPRPGSPLSPTIISRRQEKN 61
R + + P +S +S Q+ + +PP + PPR SP R +N
Sbjct: 147 RPANTTSTWEPPVSSDDEASSQSKPLATQPPVLALSNAPPRRVSPTRGRRRHTRLRRN 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.303 0.121 0.314
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,993,577
Number of extensions: 105025
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 112
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.3 bits)