RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy20
         (147 letters)



>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 144

 Score = 29.9 bits (67), Expect = 0.061
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 11/87 (12%)

Query: 7  RGATPAKTPSASRGSSSRQTSEVREEPPQPQPQSQPPRP--------GSPLSPTIISRRQ 58
           G+  A TP+       +  + VR        Q Q              PL+ ++++   
Sbjct: 3  LGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAP 62

Query: 59 EKNELKNLNDRLAQYIELVQKLQNDKA 85
           + + + L +RL     L+Q +    A
Sbjct: 63 PQEQKQMLGERL---FPLIQAMHPTLA 86


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 368

 Score = 26.0 bits (56), Expect = 2.0
 Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 99  TTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDELLDLK 145
           T E  +       E+E  ++ L + +       +E++ L + ++DL+
Sbjct: 5   TEELLRCNEQQAAELETCKEQLFQSN-------MERKELHNTVMDLR 44


>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
           family {Streptomyces sp. [TaxId: 1931]}
          Length = 367

 Score = 26.1 bits (56), Expect = 2.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 46  GSPLSPTIISRRQEKNELKNLNDRL 70
           GS  S  ++ R ++   L NLN  +
Sbjct: 282 GSLGSTELLVRARDTGTLPNLNSEV 306


>d2nlva1 d.326.1.1 (A:1-111) Hypothetical protein Ava3825
          {Anabaena variabilis [TaxId: 1172]}
          Length = 111

 Score = 25.0 bits (55), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 68 DRLAQYIELVQKLQNDKASLEYSLYSIEE 96
          D+L +Y ELV+KL  + AS + S   +E 
Sbjct: 2  DKLVKYQELVKKLLTNYASDDVSDQDVEV 30


>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
           protein TM1436 {Thermotoga maritima [TaxId: 2336]}
          Length = 172

 Score = 25.0 bits (55), Expect = 3.0
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 18/86 (20%)

Query: 63  LKNLNDRLAQY-------IELVQKLQNDKASLEYSLYSIEESH-----TTEFKKVKAASE 110
           LK     L          ++ V  L   + ++ +    ++++      T + K    A +
Sbjct: 33  LKFHLKILKDRGKTVFVDMDFVNGLGEGEEAILF----VKKAGADGIITIKPKNYVVAKK 88

Query: 111 KEIEDIRK--ALDRESSSKSALAIEK 134
             I  + +  ALD ++  +    IE 
Sbjct: 89  NGIPAVLRFFALDSKAVERGIEQIET 114


>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
           N-domain {Escherichia coli [TaxId: 562]}
          Length = 239

 Score = 25.1 bits (54), Expect = 3.3
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 93  SIEESHTTEFKKVKAASEKEIEDIRKALDRESSSKSALAIEKRRLLDE 140
            IE+    +  ++ AAS  ++ED R  LD       A    K  L+DE
Sbjct: 77  EIEQGRFVDLIEIDAASRTKVEDTRDLLD-NVQYAPARGRFKVYLIDE 123


>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 244

 Score = 25.3 bits (55), Expect = 3.4
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 59  EKNELKNLNDRLAQYIELVQK-----LQNDKASLEYSLYSIEESHTTEFKKVKAASEKEI 113
           EK   K  +    Q +E         L  D    E  +  +    T E  K +  +E EI
Sbjct: 179 EKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVV----TVENPKFRILTEAEI 234

Query: 114 EDIRKAL 120
           +    AL
Sbjct: 235 DAHLVAL 241


>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 90

 Score = 24.3 bits (53), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 50 SPTIISRRQEKNELKNLNDRLAQYIELVQKLQNDK 84
          +P++ISR  +KN   N +  +A   ELVQ L  D+
Sbjct: 32 APSVISRVLKKN---NRDSAVASEFELVQLLPGDR 63


>d2nvma1 d.326.1.1 (A:2-118) XisI {Anabaena variabilis [TaxId:
          1172]}
          Length = 117

 Score = 24.0 bits (52), Expect = 6.4
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 68 DRLAQYIELVQKLQNDKASLEYSLYSIE 95
          D+L  Y   +Q++      L  S  +  
Sbjct: 1  DKLTHYRHTIQEIIKKYYDLSNSQPATA 28


>d2yw6a1 a.25.1.1 (A:17-157) Dodecameric ferritin homolog
          {Mycobacterium smegmatis [TaxId: 1772]}
          Length = 141

 Score = 23.9 bits (51), Expect = 6.7
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 66 LNDRLAQYIELVQKLQN 82
          L  +L+ Y +L   L++
Sbjct: 5  LQKQLSTYNDLHLTLKH 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.303    0.121    0.314 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,497
Number of extensions: 20094
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 35
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 49 (22.9 bits)