Query psy200
Match_columns 490
No_of_seqs 341 out of 2687
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 21:41:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00112 origin recognition co 100.0 1.9E-35 4E-40 308.5 30.1 293 181-489 738-1044(1164)
2 KOG2227|consensus 100.0 1.9E-35 4E-40 288.5 27.8 291 194-490 150-453 (529)
3 COG1474 CDC6 Cdc6-related prot 100.0 1.1E-32 2.4E-37 274.5 28.0 274 194-478 17-292 (366)
4 KOG1514|consensus 100.0 1.3E-32 2.9E-37 280.0 28.8 284 194-488 396-692 (767)
5 TIGR02928 orc1/cdc6 family rep 100.0 1.6E-31 3.6E-36 271.0 30.1 284 194-489 15-311 (365)
6 PRK00411 cdc6 cell division co 100.0 5.7E-31 1.2E-35 269.8 30.5 276 194-480 30-311 (394)
7 COG2256 MGS1 ATPase related to 99.9 1.9E-23 4.2E-28 201.8 17.5 209 194-448 24-239 (436)
8 COG2255 RuvB Holliday junction 99.9 1.2E-21 2.6E-26 181.0 21.4 241 194-487 26-282 (332)
9 COG1222 RPT1 ATP-dependent 26S 99.9 1.7E-21 3.8E-26 185.4 19.5 222 194-451 151-396 (406)
10 PRK00080 ruvB Holliday junctio 99.9 5.4E-21 1.2E-25 190.6 23.6 248 179-483 14-277 (328)
11 TIGR00635 ruvB Holliday juncti 99.9 9.6E-21 2.1E-25 187.3 24.3 235 194-481 4-254 (305)
12 PF05496 RuvB_N: Holliday junc 99.9 1E-21 2.2E-26 178.6 13.7 190 194-422 24-229 (233)
13 PRK14956 DNA polymerase III su 99.9 3.3E-21 7.2E-26 195.3 18.9 234 178-444 6-243 (484)
14 KOG0989|consensus 99.9 2.7E-21 5.8E-26 180.6 15.5 209 176-420 22-236 (346)
15 PRK07003 DNA polymerase III su 99.9 6E-21 1.3E-25 200.1 17.8 219 180-422 6-228 (830)
16 PLN03025 replication factor C 99.9 3.7E-20 8.1E-25 183.8 20.6 198 179-419 2-205 (319)
17 KOG0991|consensus 99.9 6.4E-21 1.4E-25 170.9 12.9 200 177-419 14-219 (333)
18 KOG2028|consensus 99.8 3E-20 6.4E-25 176.5 17.6 223 183-447 131-368 (554)
19 PRK12323 DNA polymerase III su 99.8 1.6E-20 3.5E-25 194.6 16.7 220 179-420 5-231 (700)
20 PRK14949 DNA polymerase III su 99.8 9.4E-20 2E-24 194.7 20.7 217 179-420 5-226 (944)
21 KOG0730|consensus 99.8 7.1E-20 1.5E-24 186.7 18.7 224 194-452 434-679 (693)
22 PRK14960 DNA polymerase III su 99.8 8.6E-20 1.9E-24 189.7 19.2 234 180-446 5-242 (702)
23 PRK06645 DNA polymerase III su 99.8 2E-19 4.4E-24 186.0 20.8 242 178-448 9-257 (507)
24 COG1223 Predicted ATPase (AAA+ 99.8 1.4E-19 3.1E-24 164.8 17.2 219 194-449 121-357 (368)
25 PRK14958 DNA polymerase III su 99.8 1.1E-19 2.3E-24 189.4 17.6 237 179-448 5-245 (509)
26 PRK04195 replication factor C 99.8 2.9E-19 6.2E-24 186.9 20.8 198 179-417 3-205 (482)
27 KOG0738|consensus 99.8 2.1E-19 4.6E-24 172.2 17.4 228 194-452 212-474 (491)
28 PRK13342 recombination factor 99.8 3.9E-19 8.5E-24 182.4 20.7 213 179-447 1-219 (413)
29 PRK14962 DNA polymerase III su 99.8 6.1E-19 1.3E-23 181.8 22.0 235 179-447 3-242 (472)
30 PRK14952 DNA polymerase III su 99.8 2.9E-19 6.3E-24 187.6 19.6 233 180-444 3-241 (584)
31 KOG0734|consensus 99.8 3.5E-19 7.6E-24 176.5 18.8 221 194-451 304-545 (752)
32 PRK07764 DNA polymerase III su 99.8 2.9E-19 6.4E-24 194.3 18.9 217 180-420 5-227 (824)
33 PRK07994 DNA polymerase III su 99.8 3.3E-19 7.1E-24 188.1 18.2 230 181-444 7-241 (647)
34 PRK14959 DNA polymerase III su 99.8 4.3E-19 9.2E-24 185.5 18.9 234 179-446 5-243 (624)
35 PRK14951 DNA polymerase III su 99.8 3.7E-19 8E-24 187.4 18.5 235 180-445 6-247 (618)
36 PRK08691 DNA polymerase III su 99.8 3.2E-19 7E-24 187.2 17.5 235 180-447 6-244 (709)
37 PRK14964 DNA polymerase III su 99.8 1.6E-18 3.4E-23 178.0 21.6 213 181-444 4-238 (491)
38 PRK13341 recombination factor 99.8 7.9E-19 1.7E-23 188.8 20.2 222 179-446 17-246 (725)
39 PRK14961 DNA polymerase III su 99.8 3.6E-19 7.9E-24 179.4 16.2 233 180-445 6-242 (363)
40 PRK14957 DNA polymerase III su 99.8 8.5E-19 1.9E-23 182.4 19.0 234 179-445 5-242 (546)
41 PRK03992 proteasome-activating 99.8 3.8E-18 8.1E-23 173.3 21.7 222 194-452 131-377 (389)
42 PRK14087 dnaA chromosomal repl 99.8 3.6E-18 7.8E-23 175.9 21.0 247 218-489 140-408 (450)
43 PRK00440 rfc replication facto 99.8 8.8E-18 1.9E-22 167.2 22.5 218 177-447 4-226 (319)
44 KOG0733|consensus 99.8 4.6E-18 1E-22 171.2 19.6 202 194-425 190-414 (802)
45 PRK08451 DNA polymerase III su 99.8 4.5E-18 9.8E-23 176.1 20.1 231 179-443 3-238 (535)
46 TIGR00602 rad24 checkpoint pro 99.8 1.6E-18 3.5E-23 182.8 16.4 253 177-445 71-353 (637)
47 PTZ00454 26S protease regulato 99.8 1.1E-17 2.4E-22 169.1 21.3 220 194-450 145-389 (398)
48 CHL00195 ycf46 Ycf46; Provisio 99.8 1.1E-17 2.5E-22 172.5 21.8 223 194-451 228-467 (489)
49 PRK12402 replication factor C 99.8 8.7E-18 1.9E-22 168.6 20.3 236 178-446 3-248 (337)
50 CHL00176 ftsH cell division pr 99.8 8E-18 1.7E-22 179.0 20.9 219 194-449 183-425 (638)
51 PRK05563 DNA polymerase III su 99.8 1.2E-17 2.7E-22 176.2 22.1 232 180-444 6-241 (559)
52 PTZ00361 26 proteosome regulat 99.8 1.1E-17 2.3E-22 170.2 20.5 220 194-449 183-426 (438)
53 PRK14963 DNA polymerase III su 99.8 1.4E-17 3.1E-22 173.1 21.9 228 182-445 6-238 (504)
54 TIGR02881 spore_V_K stage V sp 99.8 1.7E-17 3.6E-22 160.1 20.7 208 194-425 6-241 (261)
55 PRK06893 DNA replication initi 99.8 1.8E-17 3.9E-22 156.5 20.0 190 217-445 37-228 (229)
56 TIGR03015 pepcterm_ATPase puta 99.8 1.6E-16 3.5E-21 154.3 27.1 217 218-448 42-267 (269)
57 PRK14969 DNA polymerase III su 99.8 5.1E-18 1.1E-22 178.0 17.3 232 181-445 7-242 (527)
58 TIGR02639 ClpA ATP-dependent C 99.8 2E-17 4.4E-22 181.0 22.1 235 194-452 182-434 (731)
59 PRK05896 DNA polymerase III su 99.8 2.3E-17 5E-22 171.8 20.5 233 179-444 5-241 (605)
60 PRK07133 DNA polymerase III su 99.8 2.9E-17 6.3E-22 174.3 21.2 230 179-443 7-239 (725)
61 PRK09111 DNA polymerase III su 99.8 2.6E-17 5.7E-22 173.8 20.4 236 179-445 13-255 (598)
62 PRK14965 DNA polymerase III su 99.8 1.2E-17 2.7E-22 177.1 17.7 230 180-443 6-240 (576)
63 PRK14088 dnaA chromosomal repl 99.8 6E-17 1.3E-21 166.7 22.2 243 219-489 130-394 (440)
64 TIGR02880 cbbX_cfxQ probable R 99.8 4.5E-17 9.8E-22 158.4 20.2 203 194-423 22-254 (284)
65 TIGR01241 FtsH_fam ATP-depende 99.8 5.1E-17 1.1E-21 170.7 21.4 220 194-450 55-298 (495)
66 PRK08084 DNA replication initi 99.8 8.3E-17 1.8E-21 152.5 20.5 208 194-445 23-234 (235)
67 TIGR02397 dnaX_nterm DNA polym 99.8 9.6E-17 2.1E-21 162.2 22.3 234 179-445 3-240 (355)
68 TIGR02902 spore_lonB ATP-depen 99.8 7.3E-18 1.6E-22 177.3 14.4 243 177-445 52-330 (531)
69 PRK14955 DNA polymerase III su 99.8 3.5E-17 7.5E-22 167.0 18.2 237 182-444 8-254 (397)
70 PRK00149 dnaA chromosomal repl 99.7 9.2E-17 2E-21 166.8 21.3 211 218-452 147-374 (450)
71 PRK14086 dnaA chromosomal repl 99.7 1.5E-16 3.2E-21 165.9 22.6 264 194-489 289-576 (617)
72 KOG0733|consensus 99.7 3.5E-17 7.5E-22 165.0 17.2 229 194-452 511-774 (802)
73 TIGR00362 DnaA chromosomal rep 99.7 1.8E-16 3.9E-21 162.7 22.8 243 218-489 135-397 (405)
74 PRK14953 DNA polymerase III su 99.7 1.7E-16 3.6E-21 164.6 22.4 233 179-445 5-242 (486)
75 TIGR01242 26Sp45 26S proteasom 99.7 7.1E-17 1.5E-21 163.3 19.1 218 194-447 122-363 (364)
76 KOG1970|consensus 99.7 7.2E-17 1.6E-21 161.4 18.6 229 174-418 66-319 (634)
77 PRK14954 DNA polymerase III su 99.7 7.7E-17 1.7E-21 170.5 19.8 237 183-445 9-255 (620)
78 KOG0728|consensus 99.7 5.7E-17 1.2E-21 147.1 15.8 225 194-452 147-393 (404)
79 PRK06305 DNA polymerase III su 99.7 1.4E-16 3E-21 164.2 20.7 232 181-445 8-244 (451)
80 PRK06647 DNA polymerase III su 99.7 1.7E-16 3.7E-21 167.0 21.5 230 182-444 8-241 (563)
81 CHL00181 cbbX CbbX; Provisiona 99.7 1.1E-16 2.4E-21 155.5 18.7 203 194-423 23-255 (287)
82 KOG0739|consensus 99.7 1.7E-17 3.6E-22 154.1 11.9 185 194-407 133-337 (439)
83 PRK14948 DNA polymerase III su 99.7 8.9E-17 1.9E-21 170.9 19.0 215 179-419 5-227 (620)
84 PRK14950 DNA polymerase III su 99.7 1.1E-16 2.4E-21 170.6 19.7 229 180-444 6-242 (585)
85 PRK08727 hypothetical protein; 99.7 4.7E-16 1E-20 147.2 21.2 208 194-446 20-230 (233)
86 PRK14970 DNA polymerase III su 99.7 3.4E-16 7.4E-21 158.7 21.0 216 179-445 6-231 (367)
87 COG2812 DnaX DNA polymerase II 99.7 2.9E-17 6.3E-22 168.0 13.2 218 182-423 8-229 (515)
88 KOG1969|consensus 99.7 1.8E-16 4E-21 162.9 18.9 214 179-425 260-521 (877)
89 PHA02544 44 clamp loader, smal 99.7 2.8E-16 6.1E-21 156.2 20.0 201 177-419 8-214 (316)
90 KOG0731|consensus 99.7 3E-16 6.5E-21 165.1 20.6 224 194-451 311-557 (774)
91 PRK12422 chromosomal replicati 99.7 4.5E-16 9.7E-21 159.9 21.4 241 219-489 141-404 (445)
92 KOG0736|consensus 99.7 2.2E-16 4.7E-21 163.1 18.6 227 194-452 672-937 (953)
93 TIGR01243 CDC48 AAA family ATP 99.7 5.9E-16 1.3E-20 170.0 21.8 228 194-452 453-715 (733)
94 PRK08903 DnaA regulatory inact 99.7 1E-15 2.2E-20 144.7 20.4 205 194-445 18-224 (227)
95 TIGR03689 pup_AAA proteasome A 99.7 1.5E-15 3.2E-20 156.6 23.2 172 194-383 182-381 (512)
96 TIGR03345 VI_ClpV1 type VI sec 99.7 6.3E-16 1.4E-20 170.4 21.0 224 194-444 187-428 (852)
97 COG0464 SpoVK ATPases of the A 99.7 8.6E-16 1.9E-20 161.9 21.1 223 194-450 242-486 (494)
98 PRK14971 DNA polymerase III su 99.7 9.5E-16 2.1E-20 163.1 21.3 219 180-422 7-230 (614)
99 COG0593 DnaA ATPase involved i 99.7 1.4E-15 3E-20 151.5 20.9 263 194-489 88-372 (408)
100 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.9E-15 4.1E-20 142.8 20.7 201 199-444 22-225 (226)
101 KOG0652|consensus 99.7 5.5E-16 1.2E-20 141.5 15.9 224 194-451 171-416 (424)
102 PF03215 Rad17: Rad17 cell cyc 99.7 2.8E-16 6E-21 163.2 16.0 229 177-420 6-269 (519)
103 PRK05642 DNA replication initi 99.7 2.4E-15 5.3E-20 142.3 20.5 187 219-445 45-233 (234)
104 CHL00095 clpC Clp protease ATP 99.7 3.3E-15 7.2E-20 165.5 22.7 206 194-422 179-401 (821)
105 PLN00020 ribulose bisphosphate 99.7 2.7E-15 5.8E-20 145.7 19.1 176 194-399 119-326 (413)
106 PRK11034 clpA ATP-dependent Cl 99.7 4E-15 8.8E-20 161.1 22.1 240 194-452 186-438 (758)
107 PF00308 Bac_DnaA: Bacterial d 99.7 3.9E-15 8.4E-20 139.3 18.9 182 218-423 33-217 (219)
108 KOG0727|consensus 99.7 1.2E-15 2.6E-20 138.7 14.3 222 194-450 155-399 (408)
109 KOG2228|consensus 99.7 1.4E-14 3.1E-19 137.2 21.8 267 194-476 24-308 (408)
110 PRK06620 hypothetical protein; 99.7 5.8E-15 1.2E-19 137.5 19.0 194 194-444 17-213 (214)
111 KOG0740|consensus 99.7 3.2E-15 6.9E-20 148.8 17.5 228 194-452 153-409 (428)
112 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.1E-14 2.3E-19 164.0 22.7 214 217-450 1628-1880(2281)
113 PRK09087 hypothetical protein; 99.6 1.8E-14 3.8E-19 135.4 20.2 189 209-448 35-223 (226)
114 PRK10733 hflB ATP-dependent me 99.6 1.4E-14 3E-19 155.9 21.2 220 194-450 152-395 (644)
115 KOG0737|consensus 99.6 1.1E-14 2.3E-19 140.1 18.0 200 194-424 92-313 (386)
116 COG1224 TIP49 DNA helicase TIP 99.6 3.4E-14 7.4E-19 135.5 20.5 133 299-448 292-433 (450)
117 COG0465 HflB ATP-dependent Zn 99.6 8E-15 1.7E-19 151.9 17.3 224 194-452 150-395 (596)
118 PF05621 TniB: Bacterial TniB 99.6 3.4E-14 7.5E-19 135.4 20.2 234 194-442 34-284 (302)
119 TIGR02903 spore_lon_C ATP-depe 99.6 5E-14 1.1E-18 150.6 22.6 233 194-447 154-430 (615)
120 TIGR01243 CDC48 AAA family ATP 99.6 4E-14 8.6E-19 155.6 21.7 225 194-451 178-439 (733)
121 TIGR03346 chaperone_ClpB ATP-d 99.6 2.5E-14 5.5E-19 158.9 20.0 208 194-423 173-397 (852)
122 KOG0990|consensus 99.6 1.6E-14 3.5E-19 136.2 15.4 238 173-452 24-277 (360)
123 PRK09112 DNA polymerase III su 99.6 5.3E-14 1.2E-18 140.2 19.8 200 194-418 23-244 (351)
124 KOG0726|consensus 99.6 1.1E-14 2.5E-19 135.0 13.6 222 194-449 185-428 (440)
125 PRK10865 protein disaggregatio 99.6 4.2E-14 9.1E-19 156.6 20.2 184 194-399 178-375 (857)
126 KOG0729|consensus 99.6 2.1E-14 4.5E-19 131.7 13.3 223 194-450 177-421 (435)
127 TIGR00763 lon ATP-dependent pr 99.6 7.3E-14 1.6E-18 153.9 19.7 200 194-413 320-545 (775)
128 COG0466 Lon ATP-dependent Lon 99.6 1.7E-13 3.6E-18 141.8 20.8 239 185-446 315-583 (782)
129 PRK07940 DNA polymerase III su 99.6 6.7E-14 1.5E-18 141.3 17.8 199 194-415 5-214 (394)
130 PF00931 NB-ARC: NB-ARC domain 99.6 5E-14 1.1E-18 138.0 16.2 201 199-419 1-206 (287)
131 PF00004 AAA: ATPase family as 99.6 2.5E-14 5.4E-19 122.9 12.1 119 222-365 1-131 (132)
132 PRK10787 DNA-binding ATP-depen 99.6 1.7E-13 3.6E-18 149.7 21.4 236 186-445 315-580 (784)
133 PF01637 Arch_ATPase: Archaeal 99.6 4.7E-14 1E-18 133.4 13.9 203 196-414 1-233 (234)
134 TIGR02974 phageshock_pspF psp 99.6 4.3E-14 9.4E-19 140.2 14.1 213 196-423 1-234 (329)
135 KOG2035|consensus 99.6 1.1E-13 2.4E-18 127.8 15.5 217 179-419 2-233 (351)
136 COG0542 clpA ATP-binding subun 99.5 2.9E-13 6.2E-18 143.9 19.9 210 194-426 170-397 (786)
137 PF05673 DUF815: Protein of un 99.5 7E-13 1.5E-17 122.7 19.6 191 194-414 27-241 (249)
138 PRK04132 replication factor C 99.5 3.5E-13 7.6E-18 146.1 19.8 164 222-420 567-737 (846)
139 KOG2004|consensus 99.5 4.2E-13 9.2E-18 138.1 18.8 200 187-406 405-630 (906)
140 COG2204 AtoC Response regulato 99.5 6.1E-14 1.3E-18 141.8 12.3 217 194-425 141-377 (464)
141 TIGR02640 gas_vesic_GvpN gas v 99.5 1.2E-12 2.5E-17 126.3 20.5 206 219-450 21-260 (262)
142 KOG0735|consensus 99.5 5.2E-13 1.1E-17 137.2 18.6 192 194-412 667-878 (952)
143 KOG0730|consensus 99.5 4.1E-13 9E-18 137.7 17.7 218 194-452 184-421 (693)
144 PRK11608 pspF phage shock prot 99.5 1.3E-13 2.8E-18 137.0 13.0 215 194-423 6-241 (326)
145 PRK11034 clpA ATP-dependent Cl 99.5 3.9E-13 8.4E-18 145.8 17.3 213 194-419 458-712 (758)
146 COG3829 RocR Transcriptional r 99.5 1.4E-13 3E-18 138.9 12.8 231 194-446 245-497 (560)
147 TIGR02329 propionate_PrpR prop 99.5 2.6E-13 5.6E-18 142.0 15.1 232 194-444 212-467 (526)
148 COG1221 PspF Transcriptional r 99.5 2.4E-13 5.1E-18 135.2 13.9 219 194-426 78-313 (403)
149 PRK05342 clpX ATP-dependent pr 99.5 8.8E-13 1.9E-17 133.9 17.9 227 194-441 71-399 (412)
150 TIGR01817 nifA Nif-specific re 99.5 1.3E-13 2.9E-18 146.5 12.0 225 194-441 196-439 (534)
151 PRK13531 regulatory ATPase Rav 99.5 2.3E-12 5E-17 130.9 19.6 230 194-452 20-288 (498)
152 PRK05022 anaerobic nitric oxid 99.5 6.5E-13 1.4E-17 140.0 16.2 217 194-425 187-423 (509)
153 COG3267 ExeA Type II secretory 99.5 9.8E-12 2.1E-16 114.5 21.4 209 218-441 50-267 (269)
154 PRK07471 DNA polymerase III su 99.5 2.7E-12 5.8E-17 128.7 19.5 201 194-416 19-240 (365)
155 PRK05201 hslU ATP-dependent pr 99.5 4.8E-12 1E-16 126.1 20.9 150 300-452 251-437 (443)
156 PRK15424 propionate catabolism 99.5 3.8E-13 8.2E-18 140.5 13.7 230 194-441 219-479 (538)
157 KOG0651|consensus 99.5 2.5E-13 5.4E-18 127.4 10.9 221 194-448 132-374 (388)
158 TIGR00390 hslU ATP-dependent p 99.5 1.2E-11 2.7E-16 123.1 23.0 151 299-452 248-435 (441)
159 TIGR00678 holB DNA polymerase 99.5 2.6E-12 5.5E-17 117.8 16.9 172 217-411 12-188 (188)
160 PF06068 TIP49: TIP49 C-termin 99.4 6.3E-12 1.4E-16 122.2 19.1 109 299-419 279-396 (398)
161 KOG0732|consensus 99.4 3.1E-12 6.7E-17 138.6 18.7 249 194-471 265-546 (1080)
162 PRK10820 DNA-binding transcrip 99.4 1.5E-12 3.2E-17 137.3 15.9 225 194-440 204-447 (520)
163 TIGR02639 ClpA ATP-dependent C 99.4 3.3E-12 7.2E-17 140.2 18.9 212 194-420 454-709 (731)
164 PRK13407 bchI magnesium chelat 99.4 7.3E-12 1.6E-16 123.6 18.2 245 194-452 8-311 (334)
165 PRK15429 formate hydrogenlyase 99.4 3.6E-12 7.9E-17 139.3 17.2 215 194-423 376-610 (686)
166 PRK07399 DNA polymerase III su 99.4 2.6E-11 5.7E-16 119.3 21.5 203 194-419 4-226 (314)
167 COG0470 HolB ATPase involved i 99.4 3E-12 6.5E-17 127.7 15.0 182 195-421 2-206 (325)
168 TIGR03345 VI_ClpV1 type VI sec 99.4 4.1E-12 8.9E-17 140.4 17.2 215 194-421 566-829 (852)
169 TIGR03346 chaperone_ClpB ATP-d 99.4 7.3E-12 1.6E-16 139.4 19.3 218 194-421 565-824 (852)
170 CHL00081 chlI Mg-protoporyphyr 99.4 2.2E-11 4.7E-16 120.4 20.4 244 194-452 17-327 (350)
171 COG3604 FhlA Transcriptional r 99.4 1.4E-12 3E-17 130.1 11.7 214 194-422 223-456 (550)
172 TIGR00382 clpX endopeptidase C 99.4 9.5E-12 2.1E-16 125.6 18.0 215 188-424 72-386 (413)
173 PRK11388 DNA-binding transcrip 99.4 1.3E-12 2.9E-17 141.8 12.4 225 194-444 325-568 (638)
174 PRK05564 DNA polymerase III su 99.4 2.7E-11 5.8E-16 120.1 20.1 180 194-413 4-189 (313)
175 KOG0742|consensus 99.4 1.7E-11 3.7E-16 118.9 17.5 164 194-383 355-531 (630)
176 KOG0744|consensus 99.4 1.1E-11 2.4E-16 117.0 15.3 171 194-383 142-343 (423)
177 KOG0735|consensus 99.4 2.1E-11 4.5E-16 125.6 18.4 203 218-450 430-651 (952)
178 cd00009 AAA The AAA+ (ATPases 99.4 1.2E-11 2.5E-16 107.7 14.6 148 197-366 1-151 (151)
179 TIGR02030 BchI-ChlI magnesium 99.4 2.6E-11 5.7E-16 119.9 18.7 244 194-452 4-314 (337)
180 PF13401 AAA_22: AAA domain; P 99.4 3.4E-12 7.3E-17 109.6 10.9 119 218-339 3-126 (131)
181 PRK10865 protein disaggregatio 99.4 1.3E-11 2.8E-16 136.9 18.3 214 194-419 568-825 (857)
182 KOG2680|consensus 99.4 5.5E-11 1.2E-15 111.1 19.1 135 299-450 289-432 (454)
183 KOG4658|consensus 99.4 3.1E-11 6.7E-16 133.2 19.4 198 197-419 161-366 (889)
184 COG0542 clpA ATP-binding subun 99.3 1.4E-11 3.1E-16 131.2 15.5 216 194-419 491-751 (786)
185 TIGR02442 Cob-chelat-sub cobal 99.3 6.6E-11 1.4E-15 127.6 21.0 244 194-452 4-309 (633)
186 PRK08058 DNA polymerase III su 99.3 4.6E-11 9.9E-16 118.9 17.9 196 194-416 5-206 (329)
187 TIGR00764 lon_rel lon-related 99.3 9.9E-11 2.1E-15 125.0 21.3 241 194-447 18-391 (608)
188 KOG0741|consensus 99.3 5.1E-12 1.1E-16 126.1 10.4 229 195-450 222-493 (744)
189 KOG2543|consensus 99.3 1.4E-10 2.9E-15 112.3 19.5 215 194-422 6-234 (438)
190 KOG1942|consensus 99.3 1E-10 2.2E-15 109.1 17.7 133 299-448 297-439 (456)
191 CHL00095 clpC Clp protease ATP 99.3 5.3E-11 1.2E-15 132.2 19.0 214 194-419 509-778 (821)
192 COG2607 Predicted ATPase (AAA+ 99.3 1.1E-10 2.4E-15 106.2 17.1 175 194-398 60-255 (287)
193 TIGR01650 PD_CobS cobaltochela 99.3 6.7E-11 1.5E-15 115.1 15.4 185 194-399 45-250 (327)
194 PRK05707 DNA polymerase III su 99.3 2.3E-10 5E-15 113.2 19.0 179 216-415 19-204 (328)
195 PRK10923 glnG nitrogen regulat 99.3 3.7E-11 8E-16 126.2 14.0 228 194-444 138-385 (469)
196 PF13191 AAA_16: AAA ATPase do 99.3 2.3E-11 4.9E-16 110.9 9.9 129 195-325 1-177 (185)
197 TIGR02915 PEP_resp_reg putativ 99.3 3.9E-11 8.5E-16 125.1 12.8 224 194-440 139-382 (445)
198 TIGR01818 ntrC nitrogen regula 99.2 1E-10 2.2E-15 122.6 14.6 228 194-444 134-381 (463)
199 PRK11331 5-methylcytosine-spec 99.2 4.9E-10 1.1E-14 113.2 18.0 170 194-377 175-369 (459)
200 PRK15115 response regulator Gl 99.2 1.3E-10 2.8E-15 121.2 13.8 228 194-444 134-381 (444)
201 TIGR02031 BchD-ChlD magnesium 99.2 5.3E-10 1.2E-14 119.2 18.5 215 217-452 14-263 (589)
202 COG0714 MoxR-like ATPases [Gen 99.2 5.2E-10 1.1E-14 111.7 17.3 165 194-377 24-199 (329)
203 TIGR00368 Mg chelatase-related 99.2 6.6E-10 1.4E-14 115.6 18.6 231 194-445 192-497 (499)
204 PRK13765 ATP-dependent proteas 99.2 8.8E-10 1.9E-14 117.4 19.5 239 194-445 31-398 (637)
205 COG1239 ChlI Mg-chelatase subu 99.2 1.5E-09 3.3E-14 107.2 19.0 239 194-450 17-325 (423)
206 PRK06871 DNA polymerase III su 99.2 2.5E-09 5.5E-14 105.1 20.3 189 202-415 10-204 (325)
207 PRK07993 DNA polymerase III su 99.2 5.1E-10 1.1E-14 111.1 15.6 188 203-415 11-205 (334)
208 PF13177 DNA_pol3_delta2: DNA 99.2 9.8E-11 2.1E-15 104.3 9.4 155 198-368 1-162 (162)
209 COG1220 HslU ATP-dependent pro 99.2 2.8E-09 6.1E-14 101.5 18.4 151 299-452 251-438 (444)
210 PF00158 Sigma54_activat: Sigm 99.2 1.3E-10 2.9E-15 103.8 9.0 135 196-340 1-143 (168)
211 smart00350 MCM minichromosome 99.1 1.5E-09 3.1E-14 114.5 18.1 232 194-448 203-505 (509)
212 PLN03210 Resistant to P. syrin 99.1 2E-09 4.3E-14 124.4 20.4 200 194-419 184-399 (1153)
213 PRK11361 acetoacetate metaboli 99.1 5.1E-10 1.1E-14 117.2 13.9 228 194-444 143-390 (457)
214 PRK08769 DNA polymerase III su 99.1 4.5E-09 9.8E-14 103.2 19.4 185 201-415 11-209 (319)
215 KOG1968|consensus 99.1 1.2E-10 2.6E-15 126.8 8.9 216 178-418 308-535 (871)
216 KOG0743|consensus 99.1 4E-09 8.7E-14 104.9 17.3 156 194-383 201-386 (457)
217 PF07728 AAA_5: AAA domain (dy 99.1 4.1E-11 8.9E-16 104.1 2.9 122 221-355 1-139 (139)
218 PF05729 NACHT: NACHT domain 99.1 3.8E-09 8.2E-14 94.2 15.1 149 220-382 1-165 (166)
219 PRK08116 hypothetical protein; 99.1 2E-09 4.4E-14 103.8 13.4 150 202-368 96-250 (268)
220 COG1219 ClpX ATP-dependent pro 99.0 1.2E-08 2.5E-13 96.7 17.2 213 188-421 56-366 (408)
221 PRK10365 transcriptional regul 99.0 1.8E-09 3.9E-14 112.5 12.8 227 195-444 140-386 (441)
222 PRK09862 putative ATP-dependen 99.0 4.7E-09 1E-13 108.8 15.3 232 194-446 191-491 (506)
223 COG3283 TyrR Transcriptional r 99.0 2.6E-09 5.7E-14 102.4 12.0 213 194-425 204-435 (511)
224 PHA02244 ATPase-like protein 99.0 2.3E-08 4.9E-13 98.7 18.2 152 194-369 96-263 (383)
225 KOG0745|consensus 99.0 1.3E-08 2.9E-13 99.9 16.1 187 219-425 226-511 (564)
226 PRK06090 DNA polymerase III su 99.0 1.1E-08 2.5E-13 100.3 15.9 161 202-378 11-178 (319)
227 PRK06964 DNA polymerase III su 99.0 6.6E-09 1.4E-13 102.9 14.0 153 216-379 18-203 (342)
228 KOG0736|consensus 99.0 2.4E-08 5.1E-13 104.5 17.7 253 195-476 402-690 (953)
229 PF14516 AAA_35: AAA-like doma 99.0 5.9E-08 1.3E-12 96.7 20.1 204 194-418 11-243 (331)
230 PRK12377 putative replication 99.0 9.6E-09 2.1E-13 97.4 13.4 150 198-368 82-236 (248)
231 COG3284 AcoR Transcriptional a 99.0 2.1E-09 4.5E-14 111.0 9.0 213 198-425 317-543 (606)
232 PF14532 Sigma54_activ_2: Sigm 98.9 2.9E-09 6.3E-14 92.4 8.6 136 197-367 1-138 (138)
233 PF13173 AAA_14: AAA domain 98.9 3.7E-09 8E-14 90.4 8.1 126 219-372 2-127 (128)
234 COG0606 Predicted ATPase with 98.9 1.9E-09 4.2E-14 107.9 7.2 229 194-445 179-483 (490)
235 PRK06835 DNA replication prote 98.9 2.2E-08 4.7E-13 99.1 14.0 147 202-368 168-318 (329)
236 PF07693 KAP_NTPase: KAP famil 98.9 2E-07 4.2E-12 93.1 21.0 178 201-383 3-266 (325)
237 PRK13406 bchD magnesium chelat 98.9 7E-08 1.5E-12 102.3 18.2 209 218-452 24-255 (584)
238 PRK07952 DNA replication prote 98.9 2.4E-08 5.2E-13 94.5 12.6 148 201-368 83-235 (244)
239 PF01078 Mg_chelatase: Magnesi 98.9 1E-09 2.2E-14 99.8 2.8 133 194-339 3-157 (206)
240 smart00382 AAA ATPases associa 98.9 1.7E-08 3.8E-13 86.7 10.3 118 219-340 2-125 (148)
241 PRK07132 DNA polymerase III su 98.9 2.3E-07 5E-12 90.5 18.9 168 207-415 5-185 (299)
242 PRK06921 hypothetical protein; 98.8 5.6E-08 1.2E-12 93.6 13.7 101 218-339 116-223 (266)
243 PRK04841 transcriptional regul 98.8 3.1E-07 6.8E-12 104.4 20.8 194 194-418 14-228 (903)
244 PTZ00111 DNA replication licen 98.8 2.1E-07 4.5E-12 101.3 16.9 231 194-448 450-805 (915)
245 PRK08699 DNA polymerase III su 98.8 2E-07 4.4E-12 92.3 15.6 151 217-378 19-183 (325)
246 PRK07276 DNA polymerase III su 98.8 3E-07 6.4E-12 89.0 16.2 185 201-415 9-198 (290)
247 KOG1051|consensus 98.8 1.3E-07 2.8E-12 102.7 15.0 136 194-339 562-709 (898)
248 PTZ00202 tuzin; Provisional 98.8 4.1E-07 8.9E-12 90.9 17.1 169 194-382 262-436 (550)
249 PF12775 AAA_7: P-loop contain 98.7 5.7E-08 1.2E-12 93.8 10.6 166 200-383 16-196 (272)
250 PRK05917 DNA polymerase III su 98.7 7.7E-07 1.7E-11 85.8 18.0 138 204-368 7-155 (290)
251 PRK08181 transposase; Validate 98.7 9.5E-08 2.1E-12 91.8 11.6 91 218-326 105-197 (269)
252 KOG0741|consensus 98.7 3E-07 6.6E-12 92.6 15.4 165 218-417 537-718 (744)
253 COG3899 Predicted ATPase [Gene 98.7 5.3E-07 1.2E-11 100.2 19.1 263 195-479 1-322 (849)
254 PRK05818 DNA polymerase III su 98.7 2.7E-07 5.8E-12 87.1 14.1 173 216-416 4-192 (261)
255 PF07724 AAA_2: AAA domain (Cd 98.7 1.3E-08 2.7E-13 91.4 4.8 109 219-341 3-130 (171)
256 COG1484 DnaC DNA replication p 98.7 1E-07 2.2E-12 91.2 11.2 106 199-324 88-195 (254)
257 PF07726 AAA_3: ATPase family 98.7 3.4E-09 7.4E-14 88.4 0.3 118 221-355 1-129 (131)
258 PRK06526 transposase; Provisio 98.6 1.2E-07 2.7E-12 90.5 9.7 90 218-325 97-188 (254)
259 PF10923 DUF2791: P-loop Domai 98.6 7.1E-06 1.5E-10 82.9 22.5 79 194-274 25-110 (416)
260 smart00763 AAA_PrkA PrkA AAA d 98.6 2.7E-06 5.7E-11 84.2 17.9 52 194-245 51-104 (361)
261 PRK08939 primosomal protein Dn 98.6 3.9E-07 8.4E-12 89.5 12.1 122 198-339 135-259 (306)
262 COG2909 MalT ATP-dependent tra 98.6 1.1E-05 2.4E-10 86.3 22.2 244 194-475 19-281 (894)
263 COG1241 MCM2 Predicted ATPase 98.5 1.4E-06 3.1E-11 92.6 14.3 239 181-448 274-593 (682)
264 COG4650 RtcR Sigma54-dependent 98.5 8.2E-07 1.8E-11 83.4 11.0 232 194-446 184-442 (531)
265 PHA00729 NTP-binding motif con 98.5 2.2E-06 4.7E-11 79.5 13.1 125 217-379 15-139 (226)
266 PF10443 RNA12: RNA12 protein; 98.5 9E-06 1.9E-10 81.5 17.8 170 199-383 1-232 (431)
267 PF01695 IstB_IS21: IstB-like 98.5 3E-07 6.4E-12 83.2 6.8 101 218-339 46-148 (178)
268 COG1373 Predicted ATPase (AAA+ 98.4 1.2E-05 2.6E-10 82.1 18.5 123 221-374 39-161 (398)
269 PRK09183 transposase/IS protei 98.4 1.9E-06 4E-11 82.9 11.2 102 218-339 101-204 (259)
270 PRK14700 recombination factor 98.4 2.2E-06 4.7E-11 82.0 11.2 110 325-447 2-115 (300)
271 PF10236 DAP3: Mitochondrial r 98.4 6.4E-05 1.4E-09 74.2 21.5 55 198-254 3-57 (309)
272 PRK00771 signal recognition pa 98.4 3E-05 6.5E-10 79.6 19.7 243 196-448 64-333 (437)
273 PF03969 AFG1_ATPase: AFG1-lik 98.4 1.5E-06 3.3E-11 87.1 9.7 107 217-340 60-167 (362)
274 KOG1051|consensus 98.4 3.6E-06 7.8E-11 91.7 13.0 167 194-382 186-365 (898)
275 cd01128 rho_factor Transcripti 98.4 1.6E-06 3.5E-11 82.4 8.9 96 216-313 13-118 (249)
276 COG1618 Predicted nucleotide k 98.3 1.9E-05 4.2E-10 68.1 13.9 27 219-245 5-31 (179)
277 PRK10536 hypothetical protein; 98.3 5E-06 1.1E-10 78.4 11.3 137 194-343 55-217 (262)
278 cd01120 RecA-like_NTPases RecA 98.3 9.1E-06 2E-10 71.9 11.7 38 221-259 1-38 (165)
279 PRK12723 flagellar biosynthesi 98.3 1.2E-05 2.6E-10 81.2 13.6 149 218-373 173-328 (388)
280 KOG0480|consensus 98.3 4.7E-06 1E-10 85.9 10.4 232 194-450 345-646 (764)
281 PF12780 AAA_8: P-loop contain 98.2 7.3E-05 1.6E-09 71.9 17.6 159 195-383 9-213 (268)
282 PF13604 AAA_30: AAA domain; P 98.2 1.3E-05 2.8E-10 73.8 11.8 120 201-339 5-131 (196)
283 KOG0478|consensus 98.2 1.4E-05 3E-10 83.3 13.0 160 194-370 429-616 (804)
284 PRK12608 transcription termina 98.2 1E-05 2.2E-10 80.4 11.5 98 216-313 130-235 (380)
285 TIGR00767 rho transcription te 98.2 9E-06 1.9E-10 81.4 9.7 96 216-313 165-270 (415)
286 PF00493 MCM: MCM2/3/5 family 98.2 3E-07 6.5E-12 91.6 -0.8 233 194-448 24-327 (331)
287 PRK09376 rho transcription ter 98.2 6.9E-06 1.5E-10 81.8 8.6 97 216-313 166-271 (416)
288 KOG0482|consensus 98.1 6.7E-05 1.5E-09 75.6 15.1 241 182-452 331-643 (721)
289 PRK04296 thymidine kinase; Pro 98.1 3.9E-06 8.5E-11 76.8 6.0 111 219-338 2-115 (190)
290 COG2842 Uncharacterized ATPase 98.1 8.1E-05 1.8E-09 70.9 14.7 209 194-426 72-283 (297)
291 PRK08485 DNA polymerase III su 98.0 0.00012 2.6E-09 66.1 13.4 128 280-420 37-173 (206)
292 PRK06581 DNA polymerase III su 98.0 0.00091 2E-08 62.2 18.7 174 217-421 13-194 (263)
293 PRK14722 flhF flagellar biosyn 98.0 0.0001 2.2E-09 73.9 13.2 91 218-312 136-229 (374)
294 PRK05703 flhF flagellar biosyn 97.9 0.00026 5.6E-09 72.9 15.7 145 219-371 221-371 (424)
295 cd00046 DEXDc DEAD-like helica 97.9 5.3E-05 1.2E-09 64.6 9.0 26 220-245 1-26 (144)
296 PRK14974 cell division protein 97.9 0.00068 1.5E-08 67.3 17.6 92 218-312 139-236 (336)
297 PF04665 Pox_A32: Poxvirus A32 97.9 0.00024 5.3E-09 66.7 13.6 147 219-379 13-169 (241)
298 KOG2170|consensus 97.9 0.00077 1.7E-08 64.2 16.7 132 194-340 82-224 (344)
299 PF00448 SRP54: SRP54-type pro 97.9 0.00029 6.4E-09 64.7 13.8 144 219-370 1-153 (196)
300 COG1066 Sms Predicted ATP-depe 97.9 0.00013 2.9E-09 72.2 11.8 91 218-314 92-184 (456)
301 PF02562 PhoH: PhoH-like prote 97.9 5.7E-05 1.2E-09 69.3 8.4 114 219-339 19-156 (205)
302 PF03266 NTPase_1: NTPase; In 97.9 3E-05 6.4E-10 69.4 6.3 24 221-244 1-24 (168)
303 PF06309 Torsin: Torsin; Inte 97.9 0.00019 4.2E-09 60.0 10.6 51 194-244 25-78 (127)
304 PF09848 DUF2075: Uncharacteri 97.8 7.3E-05 1.6E-09 75.4 9.6 93 220-313 2-98 (352)
305 PF05970 PIF1: PIF1-like helic 97.8 5.7E-05 1.2E-09 76.5 8.5 30 215-244 18-47 (364)
306 COG5271 MDN1 AAA ATPase contai 97.8 0.00032 7E-09 79.4 14.3 164 217-401 1541-1718(4600)
307 PRK10867 signal recognition pa 97.8 0.003 6.5E-08 64.9 20.7 221 218-448 99-341 (433)
308 PRK13695 putative NTPase; Prov 97.8 0.00015 3.1E-09 65.5 10.0 75 298-381 96-173 (174)
309 TIGR00959 ffh signal recogniti 97.8 0.0053 1.2E-07 63.1 22.3 219 219-448 99-340 (428)
310 cd01124 KaiC KaiC is a circadi 97.8 0.00017 3.6E-09 65.7 10.4 87 221-312 1-109 (187)
311 COG5271 MDN1 AAA ATPase contai 97.8 0.00075 1.6E-08 76.7 16.6 149 217-382 886-1049(4600)
312 COG1419 FlhF Flagellar GTP-bin 97.8 0.001 2.2E-08 66.5 16.2 144 218-370 202-351 (407)
313 PF08298 AAA_PrkA: PrkA AAA do 97.8 0.0026 5.6E-08 62.7 18.5 51 194-244 61-113 (358)
314 PF00910 RNA_helicase: RNA hel 97.7 9.1E-05 2E-09 61.0 6.8 23 222-244 1-23 (107)
315 TIGR01448 recD_rel helicase, p 97.7 0.00022 4.7E-09 78.4 11.4 111 219-339 338-453 (720)
316 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00056 1.2E-08 65.0 12.9 113 218-335 20-167 (237)
317 COG0464 SpoVK ATPases of the A 97.7 0.0028 6.1E-08 67.1 19.4 201 216-449 15-228 (494)
318 TIGR03499 FlhF flagellar biosy 97.7 0.00054 1.2E-08 66.8 12.8 104 200-307 167-281 (282)
319 PRK09361 radB DNA repair and r 97.7 0.00025 5.5E-09 66.7 10.2 88 218-311 22-120 (225)
320 KOG3347|consensus 97.7 5.5E-05 1.2E-09 64.3 4.9 72 218-297 6-77 (176)
321 PRK11889 flhF flagellar biosyn 97.7 0.0019 4.1E-08 64.8 16.5 167 200-372 217-392 (436)
322 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00025 5.5E-09 78.2 11.5 110 219-339 368-477 (744)
323 PLN02674 adenylate kinase 97.7 0.00064 1.4E-08 64.3 12.6 27 218-244 30-56 (244)
324 TIGR01425 SRP54_euk signal rec 97.7 0.0086 1.9E-07 61.3 21.5 219 218-448 99-340 (429)
325 TIGR01618 phage_P_loop phage n 97.7 8.1E-05 1.8E-09 69.2 6.3 23 218-240 11-33 (220)
326 PRK11823 DNA repair protein Ra 97.7 0.00038 8.3E-09 72.2 11.9 86 218-312 79-170 (446)
327 cd01121 Sms Sms (bacterial rad 97.7 0.00015 3.3E-09 73.1 8.5 112 218-338 81-209 (372)
328 PF07034 ORC3_N: Origin recogn 97.6 0.0062 1.3E-07 60.8 19.7 220 200-424 55-323 (330)
329 cd03115 SRP The signal recogni 97.6 0.0024 5.1E-08 57.4 15.4 88 221-311 2-95 (173)
330 KOG0477|consensus 97.6 0.00064 1.4E-08 70.4 12.5 50 194-243 449-506 (854)
331 cd03281 ABC_MSH5_euk MutS5 hom 97.6 7E-05 1.5E-09 69.9 5.3 23 219-241 29-51 (213)
332 cd01131 PilT Pilus retraction 97.6 0.00012 2.7E-09 67.4 6.8 83 220-308 2-84 (198)
333 KOG2383|consensus 97.6 8.2E-05 1.8E-09 73.2 5.7 113 217-341 112-234 (467)
334 PRK12724 flagellar biosynthesi 97.6 0.0024 5.2E-08 64.8 16.3 146 219-371 223-373 (432)
335 TIGR02237 recomb_radB DNA repa 97.6 0.00033 7.1E-09 65.1 9.4 90 218-311 11-110 (209)
336 smart00487 DEXDc DEAD-like hel 97.6 0.00036 7.8E-09 63.3 9.5 53 220-273 25-78 (201)
337 PRK12727 flagellar biosynthesi 97.6 0.0019 4.1E-08 67.2 15.5 90 218-311 349-441 (559)
338 COG4088 Predicted nucleotide k 97.6 0.00079 1.7E-08 60.7 10.9 25 220-244 2-26 (261)
339 cd01122 GP4d_helicase GP4d_hel 97.6 0.00081 1.8E-08 65.2 12.3 50 218-269 29-78 (271)
340 cd00984 DnaB_C DnaB helicase C 97.6 0.00084 1.8E-08 63.9 11.9 50 218-269 12-61 (242)
341 PHA02774 E1; Provisional 97.5 0.00071 1.5E-08 70.7 11.4 35 219-256 434-468 (613)
342 PF12774 AAA_6: Hydrolytic ATP 97.5 0.0016 3.5E-08 61.3 13.0 69 219-314 32-100 (231)
343 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00047 1E-08 65.3 9.6 93 218-311 18-128 (235)
344 COG1485 Predicted ATPase [Gene 97.5 0.00028 6E-09 68.8 7.7 108 217-340 63-170 (367)
345 PRK15455 PrkA family serine pr 97.5 0.00013 2.9E-09 75.9 5.8 52 194-245 76-129 (644)
346 PRK05574 holA DNA polymerase I 97.5 0.012 2.6E-07 58.9 20.0 135 298-449 76-215 (340)
347 TIGR02012 tigrfam_recA protein 97.5 0.00078 1.7E-08 66.3 10.7 88 218-312 54-147 (321)
348 TIGR01447 recD exodeoxyribonuc 97.5 0.0005 1.1E-08 73.6 10.1 26 219-244 160-185 (586)
349 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.002 4.3E-08 60.8 13.2 92 218-313 19-136 (229)
350 PF13207 AAA_17: AAA domain; P 97.5 0.00012 2.6E-09 61.5 4.4 31 221-255 1-31 (121)
351 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 0.001 2.3E-08 60.3 10.9 24 221-244 1-24 (183)
352 PRK10875 recD exonuclease V su 97.5 0.00075 1.6E-08 72.4 11.3 117 219-339 167-302 (615)
353 PRK13889 conjugal transfer rel 97.5 0.00082 1.8E-08 75.5 11.9 107 219-339 362-471 (988)
354 PRK05800 cobU adenosylcobinami 97.5 0.00045 9.7E-09 61.9 8.1 108 221-336 3-123 (170)
355 COG0541 Ffh Signal recognition 97.5 0.011 2.4E-07 59.5 18.5 92 218-312 99-196 (451)
356 PRK06067 flagellar accessory p 97.5 0.0016 3.4E-08 61.7 12.0 89 218-311 24-133 (234)
357 TIGR02688 conserved hypothetic 97.5 0.00085 1.8E-08 67.7 10.4 69 218-314 208-276 (449)
358 PRK05973 replicative DNA helic 97.4 0.0015 3.4E-08 61.5 11.5 114 218-339 63-193 (237)
359 PRK14532 adenylate kinase; Pro 97.4 0.0017 3.8E-08 59.1 11.7 24 221-244 2-25 (188)
360 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0015 3.2E-08 62.9 11.6 39 218-257 35-73 (259)
361 PTZ00494 tuzin-like protein; P 97.4 0.005 1.1E-07 62.0 15.0 169 194-382 371-546 (664)
362 PF04851 ResIII: Type III rest 97.4 0.0025 5.5E-08 57.3 12.3 47 201-254 10-56 (184)
363 PRK14723 flhF flagellar biosyn 97.4 0.0048 1E-07 67.2 16.1 91 219-313 185-278 (767)
364 PRK00279 adk adenylate kinase; 97.4 0.00055 1.2E-08 64.0 7.9 24 221-244 2-25 (215)
365 cd00983 recA RecA is a bacter 97.4 0.0013 2.7E-08 64.9 10.5 88 218-312 54-147 (325)
366 KOG0481|consensus 97.4 0.0036 7.7E-08 63.7 13.4 156 182-357 320-507 (729)
367 COG4608 AppF ABC-type oligopep 97.4 0.0013 2.8E-08 62.3 9.7 115 217-335 37-166 (268)
368 PRK08533 flagellar accessory p 97.4 0.0018 4E-08 61.1 11.0 49 218-269 23-71 (230)
369 PRK04328 hypothetical protein; 97.3 0.0033 7.2E-08 60.1 12.7 91 218-313 22-143 (249)
370 cd01393 recA_like RecA is a b 97.3 0.0018 4E-08 60.8 10.9 93 218-311 18-127 (226)
371 PRK09354 recA recombinase A; P 97.3 0.002 4.4E-08 64.0 11.4 88 218-312 59-152 (349)
372 PRK08118 topology modulation p 97.3 0.00074 1.6E-08 60.4 7.6 25 220-244 2-26 (167)
373 PF13481 AAA_25: AAA domain; P 97.3 0.0018 3.8E-08 59.3 10.4 94 218-313 31-156 (193)
374 PRK06762 hypothetical protein; 97.3 0.0042 9E-08 55.4 12.5 26 219-244 2-27 (166)
375 PRK12726 flagellar biosynthesi 97.3 0.014 3E-07 58.5 17.1 92 218-311 205-298 (407)
376 TIGR01128 holA DNA polymerase 97.3 0.0031 6.7E-08 62.1 12.7 131 298-448 46-179 (302)
377 PRK06995 flhF flagellar biosyn 97.3 0.0058 1.2E-07 63.5 14.8 90 218-311 255-347 (484)
378 COG2805 PilT Tfp pilus assembl 97.3 0.00093 2E-08 63.7 8.1 89 216-311 122-211 (353)
379 TIGR01420 pilT_fam pilus retra 97.3 0.00052 1.1E-08 68.9 6.7 84 218-308 121-205 (343)
380 PF06745 KaiC: KaiC; InterPro 97.3 0.0016 3.4E-08 61.4 9.5 89 218-310 18-127 (226)
381 TIGR00416 sms DNA repair prote 97.3 0.0034 7.3E-08 65.3 12.6 86 218-312 93-184 (454)
382 PRK14528 adenylate kinase; Pro 97.2 0.0038 8.2E-08 56.9 11.5 25 220-244 2-26 (186)
383 COG0194 Gmk Guanylate kinase [ 97.2 0.0057 1.2E-07 54.6 12.0 26 218-243 3-28 (191)
384 PRK13808 adenylate kinase; Pro 97.2 0.0028 6.2E-08 62.5 11.2 24 221-244 2-25 (333)
385 PRK10416 signal recognition pa 97.2 0.04 8.6E-07 54.6 19.3 93 218-313 113-211 (318)
386 PF08433 KTI12: Chromatin asso 97.2 0.0017 3.8E-08 62.6 9.5 81 220-313 2-85 (270)
387 PRK07261 topology modulation p 97.2 0.00097 2.1E-08 59.9 7.0 24 221-244 2-25 (171)
388 COG3854 SpoIIIAA ncharacterize 97.2 0.0015 3.1E-08 60.0 7.9 29 217-245 135-163 (308)
389 cd00544 CobU Adenosylcobinamid 97.2 0.0022 4.9E-08 57.3 9.2 85 222-311 2-86 (169)
390 PRK13826 Dtr system oriT relax 97.2 0.0017 3.8E-08 73.4 10.4 108 218-339 396-506 (1102)
391 COG1124 DppF ABC-type dipeptid 97.2 0.0021 4.6E-08 59.7 9.2 28 217-244 31-58 (252)
392 PRK14531 adenylate kinase; Pro 97.2 0.0034 7.4E-08 57.0 10.6 25 220-244 3-27 (183)
393 PRK14527 adenylate kinase; Pro 97.2 0.0073 1.6E-07 55.2 12.9 28 217-244 4-31 (191)
394 TIGR00064 ftsY signal recognit 97.2 0.026 5.7E-07 54.6 17.1 92 218-312 71-168 (272)
395 COG4619 ABC-type uncharacteriz 97.2 0.0055 1.2E-07 53.6 10.9 41 217-259 27-67 (223)
396 PRK14721 flhF flagellar biosyn 97.2 0.018 3.9E-07 58.9 16.5 88 218-310 190-281 (420)
397 PF03796 DnaB_C: DnaB-like hel 97.2 0.0061 1.3E-07 58.7 12.6 93 218-312 18-144 (259)
398 PRK02496 adk adenylate kinase; 97.2 0.004 8.6E-08 56.6 10.7 24 221-244 3-26 (184)
399 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0013 2.8E-08 63.4 7.7 97 199-310 65-161 (264)
400 cd01394 radB RadB. The archaea 97.1 0.0028 6E-08 59.3 9.7 40 218-258 18-57 (218)
401 TIGR02238 recomb_DMC1 meiotic 97.1 0.0041 8.9E-08 61.4 11.3 93 218-312 95-205 (313)
402 PRK13900 type IV secretion sys 97.1 0.00054 1.2E-08 68.2 5.1 98 206-310 149-247 (332)
403 cd03216 ABC_Carb_Monos_I This 97.1 0.0015 3.1E-08 58.3 7.3 99 217-323 24-126 (163)
404 TIGR02655 circ_KaiC circadian 97.1 0.0033 7.1E-08 66.2 11.0 89 218-311 262-366 (484)
405 PRK08233 hypothetical protein; 97.1 0.002 4.4E-08 58.2 8.3 26 219-244 3-28 (182)
406 PF13086 AAA_11: AAA domain; P 97.1 0.00086 1.9E-08 63.0 6.0 23 221-243 19-41 (236)
407 COG4178 ABC-type uncharacteriz 97.1 0.0023 5.1E-08 67.5 9.6 28 217-244 417-444 (604)
408 TIGR01351 adk adenylate kinase 97.1 0.0023 5E-08 59.5 8.7 23 222-244 2-24 (210)
409 COG1102 Cmk Cytidylate kinase 97.1 0.00084 1.8E-08 58.2 5.1 43 221-275 2-44 (179)
410 cd03214 ABC_Iron-Siderophores_ 97.1 0.0045 9.8E-08 56.0 10.3 103 217-323 23-141 (180)
411 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0012 2.6E-08 56.3 6.0 44 200-245 5-48 (133)
412 TIGR02782 TrbB_P P-type conjug 97.1 0.001 2.3E-08 65.3 6.3 92 208-309 123-215 (299)
413 PRK07452 DNA polymerase III su 97.1 0.043 9.3E-07 54.7 18.0 133 298-447 61-199 (326)
414 PF13479 AAA_24: AAA domain 97.1 0.0014 3E-08 61.2 6.8 79 219-311 3-81 (213)
415 cd03283 ABC_MutS-like MutS-lik 97.1 0.0014 3.1E-08 60.3 6.8 25 219-243 25-49 (199)
416 TIGR02858 spore_III_AA stage I 97.1 0.0063 1.4E-07 58.7 11.4 28 217-244 109-136 (270)
417 KOG0479|consensus 97.0 0.043 9.4E-07 56.9 17.6 153 194-369 301-487 (818)
418 PF00270 DEAD: DEAD/DEAH box h 97.0 0.0024 5.1E-08 56.8 7.9 119 219-338 14-161 (169)
419 PF13245 AAA_19: Part of AAA d 97.0 0.00075 1.6E-08 51.7 3.9 25 219-243 10-34 (76)
420 PRK06585 holA DNA polymerase I 97.0 0.031 6.8E-07 56.1 16.9 193 217-449 18-212 (343)
421 cd01428 ADK Adenylate kinase ( 97.0 0.0085 1.8E-07 54.7 11.7 23 222-244 2-24 (194)
422 PF07088 GvpD: GvpD gas vesicl 97.0 0.0016 3.5E-08 64.3 7.0 120 215-339 6-157 (484)
423 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0042 9.1E-08 59.4 9.9 33 221-254 1-33 (249)
424 cd03243 ABC_MutS_homologs The 97.0 0.00084 1.8E-08 62.1 4.8 24 218-241 28-51 (202)
425 PRK04040 adenylate kinase; Pro 97.0 0.0028 6.2E-08 57.8 8.2 26 219-244 2-27 (188)
426 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.003 6.4E-08 55.8 8.1 98 217-323 23-124 (157)
427 PRK13709 conjugal transfer nic 97.0 0.0055 1.2E-07 72.6 12.4 109 217-339 982-1100(1747)
428 PF05272 VirE: Virulence-assoc 97.0 0.0029 6.2E-08 58.2 8.1 89 219-343 52-152 (198)
429 cd03287 ABC_MSH3_euk MutS3 hom 97.0 0.0011 2.3E-08 62.2 5.4 24 218-241 30-53 (222)
430 PRK04301 radA DNA repair and r 97.0 0.0059 1.3E-07 60.6 11.0 94 218-312 101-212 (317)
431 PRK14529 adenylate kinase; Pro 97.0 0.0067 1.4E-07 56.7 10.6 24 221-244 2-25 (223)
432 PF01443 Viral_helicase1: Vira 97.0 0.00056 1.2E-08 64.6 3.5 21 222-242 1-21 (234)
433 TIGR02788 VirB11 P-type DNA tr 97.0 0.0027 5.9E-08 62.7 8.4 37 206-244 133-169 (308)
434 PTZ00035 Rad51 protein; Provis 97.0 0.0072 1.6E-07 60.3 11.4 93 218-312 117-227 (337)
435 TIGR02236 recomb_radA DNA repa 97.0 0.0066 1.4E-07 60.1 11.1 94 218-312 94-206 (310)
436 PLN03187 meiotic recombination 97.0 0.0097 2.1E-07 59.3 12.1 93 218-312 125-235 (344)
437 PRK06696 uridine kinase; Valid 96.9 0.0026 5.7E-08 59.7 7.6 59 199-259 3-61 (223)
438 PRK06731 flhF flagellar biosyn 96.9 0.017 3.8E-07 55.6 13.3 148 218-371 74-225 (270)
439 PRK09270 nucleoside triphospha 96.9 0.047 1E-06 51.5 16.1 29 217-245 31-59 (229)
440 PLN02200 adenylate kinase fami 96.9 0.011 2.4E-07 55.9 11.5 27 218-244 42-68 (234)
441 PRK12678 transcription termina 96.9 0.0034 7.4E-08 65.5 8.5 95 217-311 414-516 (672)
442 cd03238 ABC_UvrA The excision 96.9 0.0067 1.4E-07 54.7 9.5 25 217-241 19-43 (176)
443 COG0563 Adk Adenylate kinase a 96.9 0.0076 1.6E-07 54.4 9.7 24 221-244 2-25 (178)
444 TIGR03600 phage_DnaB phage rep 96.9 0.012 2.6E-07 61.0 12.5 53 218-272 193-245 (421)
445 PRK00131 aroK shikimate kinase 96.9 0.0012 2.5E-08 59.2 4.4 27 218-244 3-29 (175)
446 TIGR03575 selen_PSTK_euk L-ser 96.9 0.031 6.7E-07 55.6 14.7 37 222-258 2-38 (340)
447 PRK06547 hypothetical protein; 96.9 0.0017 3.6E-08 58.4 5.2 30 215-244 11-40 (172)
448 cd02027 APSK Adenosine 5'-phos 96.9 0.011 2.4E-07 51.8 10.3 33 222-255 2-34 (149)
449 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.0093 2E-07 56.4 10.3 27 218-244 29-55 (254)
450 PRK14712 conjugal transfer nic 96.8 0.0078 1.7E-07 70.5 11.7 109 217-339 850-968 (1623)
451 PF00006 ATP-synt_ab: ATP synt 96.8 0.0038 8.3E-08 58.0 7.6 94 217-313 13-120 (215)
452 PF13671 AAA_33: AAA domain; P 96.8 0.00087 1.9E-08 58.0 3.2 24 221-244 1-24 (143)
453 PRK09302 circadian clock prote 96.8 0.011 2.4E-07 62.8 12.2 90 218-311 30-143 (509)
454 PRK13894 conjugal transfer ATP 96.8 0.056 1.2E-06 53.6 16.3 34 208-243 139-172 (319)
455 TIGR01587 cas3_core CRISPR-ass 96.8 0.0048 1E-07 62.4 9.1 39 300-338 126-164 (358)
456 PRK09694 helicase Cas3; Provis 96.8 0.0033 7.2E-08 70.1 8.3 41 299-339 440-480 (878)
457 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0077 1.7E-07 52.4 9.1 89 217-323 24-114 (144)
458 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0018 3.8E-08 59.8 5.2 21 220-240 29-49 (200)
459 TIGR02760 TraI_TIGR conjugativ 96.8 0.0074 1.6E-07 73.2 11.6 130 199-339 431-567 (1960)
460 cd03247 ABCC_cytochrome_bd The 96.8 0.0086 1.9E-07 54.1 9.5 28 217-244 26-53 (178)
461 PTZ00293 thymidine kinase; Pro 96.8 0.001 2.3E-08 61.2 3.4 26 219-244 4-30 (211)
462 KOG3928|consensus 96.8 0.058 1.3E-06 53.9 15.6 59 194-254 155-213 (461)
463 PF13238 AAA_18: AAA domain; P 96.8 0.001 2.2E-08 56.2 3.2 22 222-243 1-22 (129)
464 cd03246 ABCC_Protease_Secretio 96.8 0.0078 1.7E-07 54.1 9.1 28 217-244 26-53 (173)
465 smart00534 MUTSac ATPase domai 96.8 0.0014 3.1E-08 59.7 4.2 20 222-241 2-21 (185)
466 TIGR00665 DnaB replicative DNA 96.8 0.016 3.5E-07 60.3 12.6 52 218-271 194-245 (434)
467 PTZ00088 adenylate kinase 1; P 96.8 0.0049 1.1E-07 58.0 7.9 25 220-244 7-31 (229)
468 PLN02459 probable adenylate ki 96.8 0.0049 1.1E-07 58.7 7.7 88 217-311 27-121 (261)
469 PRK14737 gmk guanylate kinase; 96.8 0.0054 1.2E-07 55.9 7.8 26 218-243 3-28 (186)
470 PRK10646 ADP-binding protein; 96.7 0.0091 2E-07 52.1 8.7 45 199-245 10-54 (153)
471 KOG0058|consensus 96.7 0.0097 2.1E-07 63.4 10.5 28 217-244 492-519 (716)
472 cd01133 F1-ATPase_beta F1 ATP 96.7 0.012 2.5E-07 56.6 10.3 96 217-312 67-177 (274)
473 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.002 4.3E-08 59.6 4.9 25 218-242 28-52 (204)
474 PRK03839 putative kinase; Prov 96.7 0.0015 3.3E-08 59.1 4.0 24 221-244 2-25 (180)
475 TIGR02655 circ_KaiC circadian 96.7 0.012 2.7E-07 61.9 11.3 47 218-266 20-66 (484)
476 KOG1808|consensus 96.7 0.003 6.4E-08 74.0 7.0 148 219-382 440-601 (1856)
477 PF00406 ADK: Adenylate kinase 96.7 0.002 4.3E-08 56.6 4.5 21 224-244 1-21 (151)
478 COG2804 PulE Type II secretory 96.7 0.0036 7.9E-08 64.2 6.9 104 194-313 238-342 (500)
479 PRK07594 type III secretion sy 96.7 0.078 1.7E-06 54.5 16.5 96 216-313 152-260 (433)
480 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0036 7.8E-08 56.5 6.1 28 217-244 23-50 (177)
481 cd01878 HflX HflX subfamily. 96.7 0.035 7.6E-07 51.1 13.0 25 218-242 40-64 (204)
482 cd03223 ABCD_peroxisomal_ALDP 96.7 0.021 4.6E-07 50.9 11.1 28 217-244 25-52 (166)
483 cd02019 NK Nucleoside/nucleoti 96.7 0.003 6.6E-08 47.3 4.7 22 222-243 2-23 (69)
484 KOG0922|consensus 96.7 0.033 7.1E-07 58.7 13.7 125 204-338 57-204 (674)
485 COG1936 Predicted nucleotide k 96.7 0.0013 2.9E-08 57.7 3.0 23 221-244 2-24 (180)
486 COG1136 SalX ABC-type antimicr 96.7 0.027 5.9E-07 52.4 11.7 27 217-243 29-55 (226)
487 PRK00625 shikimate kinase; Pro 96.7 0.0019 4.1E-08 58.1 4.0 24 221-244 2-25 (173)
488 COG0467 RAD55 RecA-superfamily 96.7 0.018 3.8E-07 55.5 11.1 89 217-310 21-136 (260)
489 PF05707 Zot: Zonular occluden 96.6 0.003 6.4E-08 58.0 5.3 19 221-239 2-20 (193)
490 cd04160 Arfrp1 Arfrp1 subfamil 96.6 0.045 9.7E-07 48.4 12.9 23 221-243 1-23 (167)
491 cd01852 AIG1 AIG1 (avrRpt2-ind 96.6 0.047 1E-06 50.1 13.2 22 221-242 2-23 (196)
492 cd01853 Toc34_like Toc34-like 96.6 0.032 7E-07 53.2 12.4 26 217-242 29-54 (249)
493 TIGR03880 KaiC_arch_3 KaiC dom 96.6 0.018 3.8E-07 54.1 10.6 46 218-266 15-60 (224)
494 TIGR02525 plasmid_TraJ plasmid 96.6 0.0032 7E-08 63.4 5.8 85 219-310 149-237 (372)
495 PRK05748 replicative DNA helic 96.6 0.023 5.1E-07 59.3 12.4 53 218-272 202-254 (448)
496 PF02367 UPF0079: Uncharacteri 96.6 0.0091 2E-07 50.2 7.4 29 217-245 13-41 (123)
497 TIGR02239 recomb_RAD51 DNA rep 96.6 0.014 3E-07 57.9 10.0 92 218-311 95-204 (316)
498 PRK08972 fliI flagellum-specif 96.6 0.008 1.7E-07 61.4 8.2 95 216-313 159-267 (444)
499 TIGR00041 DTMP_kinase thymidyl 96.6 0.024 5.1E-07 51.9 10.8 36 219-255 3-38 (195)
500 PF00437 T2SE: Type II/IV secr 96.6 0.0041 8.9E-08 60.3 6.0 106 194-310 104-209 (270)
No 1
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=308.45 Aligned_cols=293 Identities=28% Similarity=0.454 Sum_probs=242.9
Q ss_pred CCcchHHHhhcCC----CCCCChHHHHHHHHHHHHhhhccCCC-CeEEEECCCCCcHHHHHHHHHHHhhhc------CCc
Q psy200 181 EDKPKVEEKAKDS----CELPGREVQLEGIRQFLLGHVNNETS-GSMYISGPPGTGKSASLNLLVSRAEIK------DAF 249 (490)
Q Consensus 181 ~~~~~~~~~~l~~----~~lvgre~~~~~l~~~L~~~~~~~~~-~~ill~GppGtGKTtla~~l~~~l~~~------~~~ 249 (490)
...+..+...|+. +.|+||++++++|..+|...+.+..+ .+++|+|+||||||++++.|++++... ..+
T Consensus 738 ~~p~~~A~rvL~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f 817 (1164)
T PTZ00112 738 TDPTDKAIRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSF 817 (1164)
T ss_pred CChHHHHHHHcCcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCc
Confidence 4456667776766 89999999999999999998875544 456799999999999999999988521 247
Q ss_pred eEEEEeccCCCCHHHHHHHHHHHhcCC--CCCCcHHHHHHHHHHHH-hcCCCeEEEEEecCccccccCHHHHHHhHhCCC
Q psy200 250 KTIYINCNSVRNAASVYETIVNELKLK--PGGKSERHQLGAILKYF-DTKHKSILLILDEIDALESRKQTILYTIFEWPS 326 (490)
Q Consensus 250 ~~~~v~~~~~~~~~~l~~~i~~~l~~~--~~~~s~~~~~~~l~~~l-~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~ 326 (490)
.++++||..+.+...++..|+.+|... ..+....++++.+...+ ...+...||||||||.|....++.|+.+++|..
T Consensus 818 ~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~ 897 (1164)
T PTZ00112 818 NVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT 897 (1164)
T ss_pred eEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh
Confidence 889999999999999999999998542 22333333333333333 333456799999999999888999999999987
Q ss_pred CCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC
Q psy200 327 IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG 406 (490)
Q Consensus 327 ~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G 406 (490)
..+++++|||++|..++.+++++++++||+. ..+.|.||+.+|+.+||..++... ...++++++++|+++++...|
T Consensus 898 ~s~SKLiLIGISNdlDLperLdPRLRSRLg~--eeIvF~PYTaEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~SG 973 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPERLIPRCRSRLAF--GRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSG 973 (1164)
T ss_pred ccCCeEEEEEecCchhcchhhhhhhhhcccc--ccccCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcCC
Confidence 7788999999999999999999999999975 369999999999999999999865 356899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcCCCCCCc
Q psy200 407 DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNVKDV 486 (490)
Q Consensus 407 d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~~~~~~~ 486 (490)
|+|.||++|+.|++.+ ++ ..|+.+||.+|+..++...+ .+.|..||+|+++||+||+.+.+..+...+
T Consensus 974 DARKALDILRrAgEik--eg------skVT~eHVrkAleeiE~srI----~e~IktLPlHqKLVLlALIlLlk~tg~~~i 1041 (1164)
T PTZ00112 974 DIRKALQICRKAFENK--RG------QKIVPRDITEATNQLFDSPL----TNAINYLPWPFKMFLTCLIVELRMLNDFII 1041 (1164)
T ss_pred HHHHHHHHHHHHHhhc--CC------CccCHHHHHHHHHHHHhhhH----HHHHHcCCHHHHHHHHHHHHHHhhcCCCce
Confidence 9999999999999863 22 47999999999999988887 788999999999999999988877555456
Q ss_pred ccC
Q psy200 487 TLG 489 (490)
Q Consensus 487 ~~g 489 (490)
+.|
T Consensus 1042 ~TG 1044 (1164)
T PTZ00112 1042 PYK 1044 (1164)
T ss_pred eHH
Confidence 655
No 2
>KOG2227|consensus
Probab=100.00 E-value=1.9e-35 Score=288.53 Aligned_cols=291 Identities=38% Similarity=0.665 Sum_probs=253.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
..++||+.+...+.+|+...+....++.++|.|.||+|||.+...++..+.... .+..+|+||..+.....+|..|+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999998876433 3477999999999999999988888
Q ss_pred hc-CCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHh
Q psy200 273 LK-LKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRL 351 (490)
Q Consensus 273 l~-~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l 351 (490)
+- .........+....|.........++||++||+|+|....+..|+.+|+|....++++++||++|..|+.++++++|
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL 309 (529)
T KOG2227|consen 230 LLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRL 309 (529)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhh
Confidence 72 22222223566677777776666799999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccC--
Q psy200 352 QANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKEN-- 429 (490)
Q Consensus 352 ~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~-- 429 (490)
..++++.+..+.|.||+.+++.+||..++..+ ....+-+.+++.+|+++++.+||+|.|+++|++|+++++.++...
T Consensus 310 ~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~-~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~ 388 (529)
T KOG2227|consen 310 NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE-STSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILD 388 (529)
T ss_pred hhccCCCCceeeecCCCHHHHHHHHHHHHhcc-cccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999987 344566789999999999999999999999999999998876543
Q ss_pred ---------CcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcCCCCCCcccCC
Q psy200 430 ---------GEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNVKDVTLGK 490 (490)
Q Consensus 430 ---------~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~~~~~~~~~g~ 490 (490)
.....|.++++..+++.+.+.+. .....+||+||+++||.++.+++... +++++|+
T Consensus 389 ~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~----~~s~~slplqqkiilctl~~l~r~~k-kd~s~~e 453 (529)
T KOG2227|consen 389 DPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS----ARSRESLPLQQKIILCTLVLLIRGNK-KDVSIAE 453 (529)
T ss_pred cCCCCCCCcccccccchHHHHHHhhhhccChh----hhhhhhcCcccchhHHHHHHHHhccc-ccccHHH
Confidence 11257889999999999998888 44445999999999999999998887 8888763
No 3
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=274.49 Aligned_cols=274 Identities=27% Similarity=0.454 Sum_probs=250.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
+.+.+|+.+++++..+|...+.++.+.+++|||++|||||++++.+++++.... ...++|+||....+...++..|++.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 669999999999999999999999888999999999999999999999997543 3348999999999999999999999
Q ss_pred hc-CCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHh
Q psy200 273 LK-LKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRL 351 (490)
Q Consensus 273 l~-~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l 351 (490)
++ .+..|.+..++.+.+.+.+...++.+||+|||+|.|....++.|+.++.+......++++|+++|..++.+.+++++
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 94 46778889999999999998888899999999999999988999999998876688999999999998889999999
Q ss_pred hhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCc
Q psy200 352 QANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGE 431 (490)
Q Consensus 352 ~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~ 431 (490)
+++++. ..|.|+||+.+|+..||..+.........+++++++.++...+..+||.|.+|++|+.|.++|+.++
T Consensus 177 ~s~l~~--~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~----- 249 (366)
T COG1474 177 KSSLGP--SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG----- 249 (366)
T ss_pred hhccCc--ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC-----
Confidence 998875 4699999999999999999998765677899999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHh
Q psy200 432 VTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLK 478 (490)
Q Consensus 432 ~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~ 478 (490)
..+|+.+++..|..++..... .+.+..|+.||+++|++++.+.
T Consensus 250 ~~~v~~~~v~~a~~~~~~~~~----~~~~~~L~~~~ki~L~~i~~~~ 292 (366)
T COG1474 250 SRKVSEDHVREAQEEIERDVL----EEVLKTLPLHQKIVLLAIVELT 292 (366)
T ss_pred CCCcCHHHHHHHHHHhhHHHH----HHHHHcCCHhHHHHHHHHHHhc
Confidence 789999999999888877777 6889999999999999999875
No 4
>KOG1514|consensus
Probab=100.00 E-value=1.3e-32 Score=280.02 Aligned_cols=284 Identities=32% Similarity=0.518 Sum_probs=251.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc-CCCCeEEEECCCCCcHHHHHHHHHHHhh------hcCCceEEEEeccCCCCHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN-ETSGSMYISGPPGTGKSASLNLLVSRAE------IKDAFKTIYINCNSVRNAASVY 266 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~-~~~~~ill~GppGtGKTtla~~l~~~l~------~~~~~~~~~v~~~~~~~~~~l~ 266 (490)
+.|.||+.++.+|..+++..+.. +.+.+++|+|-||||||.+++.|.+.|. .-+.|.++++|+..+..+.++|
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 88999999999999999998877 5566999999999999999999999875 2457899999999999999999
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHh---cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCCh
Q psy200 267 ETIVNELKLKPGGKSERHQLGAILKYFD---TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDL 343 (490)
Q Consensus 267 ~~i~~~l~~~~~~~s~~~~~~~l~~~l~---~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~ 343 (490)
..|+..|.+... ......+.+...+. ....++||+|||+|.|....|+.|+++|+|....+++++||+++|.+|+
T Consensus 476 ~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 476 EKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 999999987543 34444555555554 3467899999999999999999999999999999999999999999999
Q ss_pred hHhhhH-HhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy200 344 TDRMLP-RLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLT 422 (490)
Q Consensus 344 ~~~l~~-~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a 422 (490)
+++++. ++.+|+|+ .+|.|.||+.+++.+|+..+|... ..|.++++++++++++..+||.|+++++|.+|.++|
T Consensus 554 PEr~l~nrvsSRlg~--tRi~F~pYth~qLq~Ii~~RL~~~---~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 554 PERLLMNRVSSRLGL--TRICFQPYTHEQLQEIISARLKGL---DAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred HHHHhccchhhhccc--eeeecCCCCHHHHHHHHHHhhcch---hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 999875 89999887 699999999999999999999876 568999999999999999999999999999999999
Q ss_pred Hhccc--cCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcCCCCCCccc
Q psy200 423 YDNVK--ENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNVKDVTL 488 (490)
Q Consensus 423 ~~~~~--~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~~~~~~~~~ 488 (490)
..+.. +.+....|++.||.+|+++++.... ...+.+|++.|+.+|+||+...++.+..+.++
T Consensus 629 ~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~----~~~i~glS~~~k~fl~ai~~e~~~~g~~e~~~ 692 (767)
T KOG1514|consen 629 EERNVKGKLAVSQLVGILHVMEAINEMLASPY----IKALKGLSFLQKIFLTAIVAETEGTGLEEATL 692 (767)
T ss_pred hhhcccccccccceeehHHHHHHHHHHhhhhH----HHHhcchHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 88774 2223467999999999999999888 78999999999999999999998887666544
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=100.00 E-value=1.6e-31 Score=271.00 Aligned_cols=284 Identities=21% Similarity=0.338 Sum_probs=233.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc-C----CceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK-D----AFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~-~----~~~~~~v~~~~~~~~~~l~~~ 268 (490)
+.|+||++++++|..+|...+.+..++.++|+||||+|||++++.+++++... . .+.+++++|....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 67999999999999999987777777899999999999999999999987522 1 278999999999888999999
Q ss_pred HHHHhc---C--CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhC---CCCCCCcEEEEEecCC
Q psy200 269 IVNELK---L--KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEW---PSIPGSKLVLVGVANA 340 (490)
Q Consensus 269 i~~~l~---~--~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~---~~~~~~~vilI~~tn~ 340 (490)
|+.++. . +..+.+..+..+.+.+.+...++++||||||+|.+....++.|+.++.+ ....+.++.+|+++|.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999983 2 2233455666666666665557789999999999986666778888776 2334578999999998
Q ss_pred CChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy200 341 LDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLID 420 (490)
Q Consensus 341 ~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~ 420 (490)
.++.+.+.+++.+||.. ..+.|.||+.+|+.+++..++........+++++++.+++......||+|.++++|+.|+.
T Consensus 175 ~~~~~~l~~~~~s~~~~--~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCE--EEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred cchHhhcCHHHhccCCc--ceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888899888852 4799999999999999999987432345688999999988777788999999999999999
Q ss_pred HHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcCCCCCCcccC
Q psy200 421 LTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNVKDVTLG 489 (490)
Q Consensus 421 ~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~~~~~~~~~g 489 (490)
.|..++ ...|+.+||.+|+..+..... .+.+.+||.+|+.+|+||+.+.+. +...++.|
T Consensus 253 ~a~~~~-----~~~it~~~v~~a~~~~~~~~~----~~~i~~l~~~~~~~l~ai~~~~~~-~~~~~~~~ 311 (365)
T TIGR02928 253 IAEREG-----AERVTEDHVEKAQEKIEKDRL----LELIRGLPTHSKLVLLAIANLAAN-DEDPFRTG 311 (365)
T ss_pred HHHHcC-----CCCCCHHHHHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHhc-CCCCccHH
Confidence 998887 678999999999999876655 688999999999999999988765 33445443
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=100.00 E-value=5.7e-31 Score=269.77 Aligned_cols=276 Identities=23% Similarity=0.376 Sum_probs=233.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
+.|+||++++++|..+|...+.+..+.+++|+|+||+|||++++.+++++.... ++.+++++|....+...++..|+.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 789999999999999998887777778899999999999999999999886443 6789999999998999999999999
Q ss_pred hcC---CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccc-ccCHHHHHHhHhCC-CCCCCcEEEEEecCCCChhHhh
Q psy200 273 LKL---KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALE-SRKQTILYTIFEWP-SIPGSKLVLVGVANALDLTDRM 347 (490)
Q Consensus 273 l~~---~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~-~~~~~~L~~l~~~~-~~~~~~vilI~~tn~~~~~~~l 347 (490)
+.. +..+.+..++.+.+.+.+...++++||+|||+|.+. ...++.|+.++.+. ...+.++.+|+++|..++.+.+
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence 865 234456777778887777766788999999999997 44567777777643 2344588899999988888888
Q ss_pred hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccc
Q psy200 348 LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVK 427 (490)
Q Consensus 348 ~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~ 427 (490)
.+++.+|+.. ..+.|.||+.+++.+++..++........+++++++.+++.+....||+|.++++|..|+..|..++
T Consensus 190 ~~~~~s~~~~--~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~- 266 (394)
T PRK00411 190 DPRVKSVFRP--EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG- 266 (394)
T ss_pred CHHHHhcCCc--ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-
Confidence 8888888753 4799999999999999999987542344689999999999887779999999999999999999888
Q ss_pred cCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcC
Q psy200 428 ENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSR 480 (490)
Q Consensus 428 ~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~ 480 (490)
...|+.+||..|+..+..... ...+.+||.+|+.+|+||+.+.+.
T Consensus 267 ----~~~I~~~~v~~a~~~~~~~~~----~~~~~~L~~~~k~~L~ai~~~~~~ 311 (394)
T PRK00411 267 ----SRKVTEEDVRKAYEKSEIVHL----SEVLRTLPLHEKLLLRAIVRLLKK 311 (394)
T ss_pred ----CCCcCHHHHHHHHHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHHhc
Confidence 678999999999999866555 578999999999999999987754
No 7
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.9e-23 Score=201.80 Aligned_cols=209 Identities=20% Similarity=0.283 Sum_probs=165.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
++++|++..+.. ...|...+..+...+++|||||||||||+|+.|+.... ..|..+++..
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~----~~f~~~sAv~--------------- 83 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN----AAFEALSAVT--------------- 83 (436)
T ss_pred HHhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC----CceEEecccc---------------
Confidence 889999888755 45566666778899999999999999999999999864 6677776543
Q ss_pred cCCCCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHh
Q psy200 274 KLKPGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRL 351 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l 351 (490)
.+.+++++.++++.+. .|+..||||||||++....|+.| ++...+..+++||+|+..- ...+.+.|
T Consensus 84 ------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-----Lp~vE~G~iilIGATTENP-sF~ln~AL 151 (436)
T COG2256 84 ------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL-----LPHVENGTIILIGATTENP-SFELNPAL 151 (436)
T ss_pred ------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh-----hhhhcCCeEEEEeccCCCC-CeeecHHH
Confidence 4577777777776432 36789999999999999999999 5556678899999997432 23457899
Q ss_pred hhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-----CCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhcc
Q psy200 352 QANVTLQPTLMNFAPYSREQILEIISQKLKQT-----DKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNV 426 (490)
Q Consensus 352 ~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-----~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~ 426 (490)
.+|+. ++.|.|++.+++.+++.+-+... +....+++++++.+++ ...||.|.++|+|+.++..+....
T Consensus 152 lSR~~----vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~---~s~GD~R~aLN~LE~~~~~~~~~~ 224 (436)
T COG2256 152 LSRAR----VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR---LSNGDARRALNLLELAALSAEPDE 224 (436)
T ss_pred hhhhh----eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH---hcCchHHHHHHHHHHHHHhcCCCc
Confidence 99996 89999999999999999854433 1234478999999987 788999999999999987776544
Q ss_pred ccCCcccccCHHHHHHHHHHhc
Q psy200 427 KENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 427 ~~~~~~~~It~~~v~~a~~~~~ 448 (490)
.++.+.+.+.+.+..
T Consensus 225 -------~~~~~~l~~~l~~~~ 239 (436)
T COG2256 225 -------VLILELLEEILQRRS 239 (436)
T ss_pred -------ccCHHHHHHHHhhhh
Confidence 344777777777643
No 8
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.2e-21 Score=180.97 Aligned_cols=241 Identities=16% Similarity=0.171 Sum_probs=190.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC-CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE-TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~-~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
++++|+++..+.|.-++..+...+ .-.++||+||||.||||||+.++++++ .++ ....++.+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg--vn~--k~tsGp~l------------- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG--VNL--KITSGPAL------------- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc--CCe--Eecccccc-------------
Confidence 889999999999999998764433 557999999999999999999999997 222 22222222
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC---------------CCCcEEEEEe
Q psy200 273 LKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI---------------PGSKLVLVGV 337 (490)
Q Consensus 273 l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~---------------~~~~vilI~~ 337 (490)
....++...|.. ++ ..-||||||||.+.....+.|+-.|+-... .-.++.+||+
T Consensus 89 -------eK~gDlaaiLt~-Le---~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 89 -------EKPGDLAAILTN-LE---EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred -------cChhhHHHHHhc-CC---cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 223333333333 22 234999999999999988999887653321 2346789999
Q ss_pred cCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy200 338 ANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNH 417 (490)
Q Consensus 338 tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~ 417 (490)
|++..+ +...++.||++ ..+++.|+.+|+.+|+.+..... ...+++++...|++ .+.|-+|-|..+|++
T Consensus 158 TTr~G~---lt~PLrdRFGi---~~rlefY~~~eL~~Iv~r~a~~l--~i~i~~~~a~eIA~---rSRGTPRIAnRLLrR 226 (332)
T COG2255 158 TTRAGM---LTNPLRDRFGI---IQRLEFYTVEELEEIVKRSAKIL--GIEIDEEAALEIAR---RSRGTPRIANRLLRR 226 (332)
T ss_pred cccccc---ccchhHHhcCC---eeeeecCCHHHHHHHHHHHHHHh--CCCCChHHHHHHHH---hccCCcHHHHHHHHH
Confidence 986543 44688999996 89999999999999999877665 56789999999998 888999999999999
Q ss_pred HHHHHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcCCCCCCcc
Q psy200 418 LIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNVKDVT 487 (490)
Q Consensus 418 a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~~~~~~~~ 487 (490)
....|.-.+ ...|+.+...+|+..+.-.. .+|...++.+|.+|+..+.++.+.--+
T Consensus 227 VRDfa~V~~-----~~~I~~~ia~~aL~~L~Vd~---------~GLd~~D~k~L~~li~~f~GgPVGl~t 282 (332)
T COG2255 227 VRDFAQVKG-----DGDIDRDIADKALKMLDVDE---------LGLDEIDRKYLRALIEQFGGGPVGLDT 282 (332)
T ss_pred HHHHHHHhc-----CCcccHHHHHHHHHHhCccc---------ccccHHHHHHHHHHHHHhCCCCccHHH
Confidence 999999888 67899999999998876443 488899999999999999888876443
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.7e-21 Score=185.41 Aligned_cols=222 Identities=18% Similarity=0.258 Sum_probs=166.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++-|.++++++|++.++--+.+ .+++++|||||||||||.||++||++. +..|+.+.++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----~AtFIrvvgSE------ 220 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----DATFIRVVGSE------ 220 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----CceEEEeccHH------
Confidence 68999999999999988765443 378999999999999999999999984 47788885543
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~ 331 (490)
|.+ .+.|....-+++.|.-+.. +.|+||||||||.+...+ |..+.+|+.- ......+
T Consensus 221 lVq--------KYiGEGaRlVRelF~lAre--kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 LVQ--------KYIGEGARLVRELFELARE--KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHH--------HHhccchHHHHHHHHHHhh--cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 222 4556777788888875554 679999999999997553 4455555432 2446789
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIR 409 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r 409 (490)
+-||++||+.|..+ |+|.+ ||. ..|.|+.++.+...+||+-+..+-.. -++-.++.|++...+.+| .
T Consensus 291 vKVI~ATNR~D~LD---PALLRPGR~D---RkIEfplPd~~gR~~Il~IHtrkM~l---~~dvd~e~la~~~~g~sG--A 359 (406)
T COG1222 291 VKVIMATNRPDILD---PALLRPGRFD---RKIEFPLPDEEGRAEILKIHTRKMNL---ADDVDLELLARLTEGFSG--A 359 (406)
T ss_pred eEEEEecCCccccC---hhhcCCCccc---ceeecCCCCHHHHHHHHHHHhhhccC---ccCcCHHHHHHhcCCCch--H
Confidence 99999999876544 44432 454 58999999999999999988776532 233447777773334443 2
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCc
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~ 451 (490)
.+-.+|..|.++|.++. ...|+++||.+|+.++....
T Consensus 360 dlkaictEAGm~AiR~~-----R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 360 DLKAICTEAGMFAIRER-----RDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HHHHHHHHHhHHHHHhc-----cCeecHHHHHHHHHHHHhcc
Confidence 33458999999999998 77999999999999987643
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.88 E-value=5.4e-21 Score=190.59 Aligned_cols=248 Identities=16% Similarity=0.164 Sum_probs=184.2
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhc-cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEecc
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVN-NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~-~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~ 257 (490)
.|...|+|... ++|+|++++++.+..++..... ....++++|+||||+|||++|++++++++ ..+.++++.
T Consensus 14 ~~~~~~rP~~~----~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~----~~~~~~~~~ 85 (328)
T PRK00080 14 EIERSLRPKSL----DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----VNIRITSGP 85 (328)
T ss_pred hhhhhcCcCCH----HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC----CCeEEEecc
Confidence 34456666666 8999999999999998876533 34567899999999999999999999986 333444433
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------
Q psy200 258 SVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI---------- 327 (490)
Q Consensus 258 ~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~---------- 327 (490)
.... ...+...+. ..+...+|||||||.+....++.|+.+++....
T Consensus 86 ~~~~--------------------~~~l~~~l~----~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~ 141 (328)
T PRK00080 86 ALEK--------------------PGDLAAILT----NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAA 141 (328)
T ss_pred cccC--------------------hHHHHHHHH----hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccc
Confidence 2211 112222222 123356999999999987777777766543210
Q ss_pred -----CCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q psy200 328 -----PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVA 402 (490)
Q Consensus 328 -----~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~ 402 (490)
.-..+++|++|+.. ..+.+.+++||+. .+.|.+++.+++.++|...+... ...+++++++.|++
T Consensus 142 ~~~~~~l~~~~li~at~~~---~~l~~~L~sRf~~---~~~l~~~~~~e~~~il~~~~~~~--~~~~~~~~~~~ia~--- 210 (328)
T PRK00080 142 RSIRLDLPPFTLIGATTRA---GLLTSPLRDRFGI---VQRLEFYTVEELEKIVKRSARIL--GVEIDEEGALEIAR--- 210 (328)
T ss_pred cceeecCCCceEEeecCCc---ccCCHHHHHhcCe---eeecCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHH---
Confidence 11347788888854 3456678899974 79999999999999999988876 56789999999997
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcCCC
Q psy200 403 AVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPN 482 (490)
Q Consensus 403 ~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~~~ 482 (490)
.+.|++|.+.++|+++...+...+ ...|+.+++..++..+. -....|+..++.+|.+++..+..+.
T Consensus 211 ~~~G~pR~a~~~l~~~~~~a~~~~-----~~~I~~~~v~~~l~~~~---------~~~~~l~~~~~~~l~~~~~~~~~~~ 276 (328)
T PRK00080 211 RSRGTPRIANRLLRRVRDFAQVKG-----DGVITKEIADKALDMLG---------VDELGLDEMDRKYLRTIIEKFGGGP 276 (328)
T ss_pred HcCCCchHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHhC---------CCcCCCCHHHHHHHHHHHHHcCCCc
Confidence 778999999999999988887665 45899999999997642 2236889999999999998877664
Q ss_pred C
Q psy200 483 V 483 (490)
Q Consensus 483 ~ 483 (490)
+
T Consensus 277 ~ 277 (328)
T PRK00080 277 V 277 (328)
T ss_pred e
Confidence 3
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.88 E-value=9.6e-21 Score=187.33 Aligned_cols=235 Identities=17% Similarity=0.206 Sum_probs=173.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc-CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN-ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~-~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
++|+|++++++.|..++...... ....+++|+||||+|||++++++++++. ..+..+.+.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~----~~~~~~~~~~~~~----------- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG----VNLKITSGPALEK----------- 68 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC----CCEEEeccchhcC-----------
Confidence 57999999999999999754432 3457899999999999999999999875 2233333222111
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC---------------CCCCcEEEEEe
Q psy200 273 LKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS---------------IPGSKLVLVGV 337 (490)
Q Consensus 273 l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~---------------~~~~~vilI~~ 337 (490)
...+...+.. .+...+|||||+|.+....++.|+.+++... .....+++|++
T Consensus 69 ---------~~~l~~~l~~----~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 69 ---------PGDLAAILTN----LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred ---------chhHHHHHHh----cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 1122222221 1335699999999998877777776654211 11234778888
Q ss_pred cCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy200 338 ANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNH 417 (490)
Q Consensus 338 tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~ 417 (490)
|+.. ..+.+.+++||+. .+.|.+++.+++.+++...+... ...+++++++.|++ ...|++|.+++++..
T Consensus 136 t~~~---~~l~~~l~sR~~~---~~~l~~l~~~e~~~il~~~~~~~--~~~~~~~al~~ia~---~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 136 TTRA---GMLTSPLRDRFGI---ILRLEFYTVEELAEIVSRSAGLL--NVEIEPEAALEIAR---RSRGTPRIANRLLRR 204 (305)
T ss_pred cCCc---cccCHHHHhhcce---EEEeCCCCHHHHHHHHHHHHHHh--CCCcCHHHHHHHHH---HhCCCcchHHHHHHH
Confidence 8743 3456778899973 68999999999999999988765 46789999999987 778999999999999
Q ss_pred HHHHHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcCC
Q psy200 418 LIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRP 481 (490)
Q Consensus 418 a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~~ 481 (490)
+...|...+ ...|+.+++..++..+. -....++..++.+|.||+..+++.
T Consensus 205 ~~~~a~~~~-----~~~it~~~v~~~l~~l~---------~~~~~l~~~~~~~L~al~~~~~~~ 254 (305)
T TIGR00635 205 VRDFAQVRG-----QKIINRDIALKALEMLM---------IDELGLDEIDRKLLSVLIEQFQGG 254 (305)
T ss_pred HHHHHHHcC-----CCCcCHHHHHHHHHHhC---------CCCCCCCHHHHHHHHHHHHHhCCC
Confidence 887876665 45799999999998831 124688999999999998877654
No 12
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=1e-21 Score=178.56 Aligned_cols=190 Identities=18% Similarity=0.270 Sum_probs=131.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc-CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN-ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~-~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
++++|+++.++.+.-++...... ....++++|||||+||||||+.++++++ ..+..+++.....
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~----~~~~~~sg~~i~k----------- 88 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG----VNFKITSGPAIEK----------- 88 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT------EEEEECCC--S-----------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC----CCeEeccchhhhh-----------
Confidence 99999999999998888765433 3567999999999999999999999986 4555666544322
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC---------------CCCcEEEEEe
Q psy200 273 LKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI---------------PGSKLVLVGV 337 (490)
Q Consensus 273 l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~---------------~~~~vilI~~ 337 (490)
..++...+.. + +...||||||||+|....|+.|+..++-... .-.++.+||+
T Consensus 89 ---------~~dl~~il~~-l---~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 89 ---------AGDLAAILTN-L---KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp ---------CHHHHHHHHT------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred ---------HHHHHHHHHh-c---CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 2233333322 2 2345999999999999999999998874321 1135789999
Q ss_pred cCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy200 338 ANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNH 417 (490)
Q Consensus 338 tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~ 417 (490)
|++.. .+...+++||++ ..+++.|+.+|+.+|+.+..... ...+++++...|++ .+.|..|-|.++|++
T Consensus 156 TTr~g---~ls~pLrdRFgi---~~~l~~Y~~~el~~Iv~r~a~~l--~i~i~~~~~~~Ia~---rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 156 TTRAG---LLSSPLRDRFGI---VLRLEFYSEEELAKIVKRSARIL--NIEIDEDAAEEIAR---RSRGTPRIANRLLRR 224 (233)
T ss_dssp ESSGC---CTSHCCCTTSSE---EEE----THHHHHHHHHHCCHCT--T-EE-HHHHHHHHH---CTTTSHHHHHHHHHH
T ss_pred ecccc---ccchhHHhhcce---ecchhcCCHHHHHHHHHHHHHHh--CCCcCHHHHHHHHH---hcCCChHHHHHHHHH
Confidence 98653 355789999994 67899999999999999876665 56789999999998 889999999999998
Q ss_pred HHHHH
Q psy200 418 LIDLT 422 (490)
Q Consensus 418 a~~~a 422 (490)
+...|
T Consensus 225 vrD~a 229 (233)
T PF05496_consen 225 VRDFA 229 (233)
T ss_dssp HCCCC
T ss_pred HHHHH
Confidence 75443
No 13
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=3.3e-21 Score=195.35 Aligned_cols=234 Identities=13% Similarity=0.157 Sum_probs=167.7
Q ss_pred cCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEecc
Q psy200 178 LFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257 (490)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~ 257 (490)
..|.++|+|... ++++|++..+..|..++.. +.-++.++|+||+||||||+|+.+++.+...... -...|.
T Consensus 6 ~~L~~KyRP~~f----~dvVGQe~iv~~L~~~i~~---~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~--~~~pCg 76 (484)
T PRK14956 6 EVLSRKYRPQFF----RDVIHQDLAIGALQNALKS---GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPI--GNEPCN 76 (484)
T ss_pred chhHHHhCCCCH----HHHhChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhcCccccc--CccccC
Confidence 467788998888 9999999999998888864 2334568999999999999999999998632211 112333
Q ss_pred CCCCHHHHHHHHHHHhcC-CC-CCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 258 SVRNAASVYETIVNELKL-KP-GGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 258 ~~~~~~~l~~~i~~~l~~-~~-~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
.+.+...+...+..++.. .. ...+.+.+++....... ..++..|+||||+|.|....++.|+..++. ....++
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE---Pp~~vi 153 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE---PPAHIV 153 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc---CCCceE
Confidence 333333332221111110 10 11234445444333221 235677999999999998888888777753 456788
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
||.+|+. ...+.+.+.+||. .+.|.+++.+++.+++.+.+..+ ...++++++..|++ ...|++|.+++
T Consensus 154 FILaTte---~~kI~~TI~SRCq----~~~f~~ls~~~i~~~L~~i~~~E--gi~~e~eAL~~Ia~---~S~Gd~RdAL~ 221 (484)
T PRK14956 154 FILATTE---FHKIPETILSRCQ----DFIFKKVPLSVLQDYSEKLCKIE--NVQYDQEGLFWIAK---KGDGSVRDMLS 221 (484)
T ss_pred EEeecCC---hhhccHHHHhhhh----eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCChHHHHHH
Confidence 8888874 5678899999996 89999999999999999999887 36789999999998 88899999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
+|++++..+ .+ .|+.+.|.+.+
T Consensus 222 lLeq~i~~~--~~-------~it~~~V~~~l 243 (484)
T PRK14956 222 FMEQAIVFT--DS-------KLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHhC--CC-------CcCHHHHHHHh
Confidence 999987542 22 47777776655
No 14
>KOG0989|consensus
Probab=99.87 E-value=2.7e-21 Score=180.56 Aligned_cols=209 Identities=21% Similarity=0.241 Sum_probs=155.4
Q ss_pred cccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc--eEEE
Q psy200 176 KLLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF--KTIY 253 (490)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~--~~~~ 253 (490)
+...|.++|.|... ++++|++..+..|...+.. ....++++|||||||||+++++++.++....-+ .+..
T Consensus 22 ~~~swteKYrPkt~----de~~gQe~vV~~L~~a~~~----~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTF----DELAGQEHVVQVLKNALLR----RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred CccchHHHhCCCcH----HhhcchHHHHHHHHHHHhh----cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 34479999999988 9999999999888887753 567899999999999999999999998642222 3444
Q ss_pred EeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH---HHhc-CCCeEEEEEecCccccccCHHHHHHhHhCCCCCC
Q psy200 254 INCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILK---YFDT-KHKSILLILDEIDALESRKQTILYTIFEWPSIPG 329 (490)
Q Consensus 254 v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~---~l~~-~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~ 329 (490)
.|++...... +. ......+...... .... .....||||||.|.|....|.+|.+.++-. ..
T Consensus 94 lnaSderGis-vv------------r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-s~- 158 (346)
T KOG0989|consen 94 LNASDERGIS-VV------------REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF-SR- 158 (346)
T ss_pred hccccccccc-ch------------hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc-cc-
Confidence 4444332111 10 0111111111110 0111 122369999999999999999999998852 23
Q ss_pred CcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHH
Q psy200 330 SKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIR 409 (490)
Q Consensus 330 ~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r 409 (490)
...||.+|| +.+++...+.+||. .+.|+++..+++...|+.++..+ ...+++++++.|++ .+.||+|
T Consensus 159 -~trFiLIcn---ylsrii~pi~SRC~----KfrFk~L~d~~iv~rL~~Ia~~E--~v~~d~~al~~I~~---~S~GdLR 225 (346)
T KOG0989|consen 159 -TTRFILICN---YLSRIIRPLVSRCQ----KFRFKKLKDEDIVDRLEKIASKE--GVDIDDDALKLIAK---ISDGDLR 225 (346)
T ss_pred -ceEEEEEcC---ChhhCChHHHhhHH----HhcCCCcchHHHHHHHHHHHHHh--CCCCCHHHHHHHHH---HcCCcHH
Confidence 444555577 57888899999996 79999999999999999999988 46799999999998 7889999
Q ss_pred HHHHHHHHHHH
Q psy200 410 KAIDITNHLID 420 (490)
Q Consensus 410 ~ai~ll~~a~~ 420 (490)
.|+.+|+.+..
T Consensus 226 ~Ait~Lqsls~ 236 (346)
T KOG0989|consen 226 RAITTLQSLSL 236 (346)
T ss_pred HHHHHHHHhhc
Confidence 99999998865
No 15
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=6e-21 Score=200.06 Aligned_cols=219 Identities=15% Similarity=0.251 Sum_probs=155.5
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
+.++|++... ++++|+++.++.|..++.. +...+.+||+|++|+||||+++.+++.+.+.... -...|..+
T Consensus 6 LarKYRPqtF----dEVIGQe~Vv~~L~~aL~~---gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~--~~~PCG~C 76 (830)
T PRK07003 6 LARKWRPKDF----ASLVGQEHVVRALTHALDG---GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV--TSQPCGVC 76 (830)
T ss_pred HHHHhCCCcH----HHHcCcHHHHHHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCC--CCCCCccc
Confidence 4457888777 9999999999999988863 3345667899999999999999999998643221 11223333
Q ss_pred CCHHHHHHHHHHH-hcCC-CCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 260 RNAASVYETIVNE-LKLK-PGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 260 ~~~~~l~~~i~~~-l~~~-~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
.+...+...-+.+ +... ....+.+++++.+...... .++..||||||+|.|....++.|+++++. ...+++||
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE---PP~~v~FI 153 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE---PPPHVKFI 153 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh---cCCCeEEE
Confidence 2222221100000 0111 1113455565555543321 24567999999999988778888887764 33467777
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
.+||. ..++.+.|++||. .+.|.+++.+++.++|.+.+..+ ...+++++++.|++ ...|++|.+++++
T Consensus 154 LaTtd---~~KIp~TIrSRCq----~f~Fk~Ls~eeIv~~L~~Il~~E--gI~id~eAL~lIA~---~A~GsmRdALsLL 221 (830)
T PRK07003 154 LATTD---PQKIPVTVLSRCL----QFNLKQMPAGHIVSHLERILGEE--RIAFEPQALRLLAR---AAQGSMRDALSLT 221 (830)
T ss_pred EEECC---hhhccchhhhheE----EEecCCcCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 77763 5677889999995 89999999999999999999887 45689999999998 7789999999999
Q ss_pred HHHHHHH
Q psy200 416 NHLIDLT 422 (490)
Q Consensus 416 ~~a~~~a 422 (490)
.+++...
T Consensus 222 dQAia~~ 228 (830)
T PRK07003 222 DQAIAYS 228 (830)
T ss_pred HHHHHhc
Confidence 9887543
No 16
>PLN03025 replication factor C subunit; Provisional
Probab=99.85 E-value=3.7e-20 Score=183.76 Aligned_cols=198 Identities=19% Similarity=0.256 Sum_probs=147.5
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEecc
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINCN 257 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~~ 257 (490)
+|.++|+|... ++++|+++.++.|..++.. +...+++|+||||+|||++|+++++++.... ...++.++.+
T Consensus 2 ~w~~kyrP~~l----~~~~g~~~~~~~L~~~~~~----~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 2 PWVEKYRPTKL----DDIVGNEDAVSRLQVIARD----GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred ChhhhcCCCCH----HHhcCcHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 69999999998 9999999999888887753 5566799999999999999999999974221 1235556554
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-----cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcE
Q psy200 258 SVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD-----TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKL 332 (490)
Q Consensus 258 ~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~-----~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~v 332 (490)
..... +.+++.+..... ..++..||||||+|.|....|+.|...++... ...++
T Consensus 74 d~~~~--------------------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-~~t~~ 132 (319)
T PLN03025 74 DDRGI--------------------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-NTTRF 132 (319)
T ss_pred ccccH--------------------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-CCceE
Confidence 43221 122222221111 01346799999999999888999988887432 23334
Q ss_pred EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 333 VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
+ .++|. ...+.+.+++||. .+.|.+++.+++...+...+..+ ...+++++++.+++ ...||+|.++
T Consensus 133 i--l~~n~---~~~i~~~L~SRc~----~i~f~~l~~~~l~~~L~~i~~~e--gi~i~~~~l~~i~~---~~~gDlR~al 198 (319)
T PLN03025 133 A--LACNT---SSKIIEPIQSRCA----IVRFSRLSDQEILGRLMKVVEAE--KVPYVPEGLEAIIF---TADGDMRQAL 198 (319)
T ss_pred E--EEeCC---ccccchhHHHhhh----cccCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHH
Confidence 4 44552 3466788999985 79999999999999999999887 45689999999987 7889999999
Q ss_pred HHHHHHH
Q psy200 413 DITNHLI 419 (490)
Q Consensus 413 ~ll~~a~ 419 (490)
+.|+.+.
T Consensus 199 n~Lq~~~ 205 (319)
T PLN03025 199 NNLQATH 205 (319)
T ss_pred HHHHHHH
Confidence 9998443
No 17
>KOG0991|consensus
Probab=99.85 E-value=6.4e-21 Score=170.90 Aligned_cols=200 Identities=21% Similarity=0.283 Sum_probs=156.5
Q ss_pred ccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEe
Q psy200 177 LLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYIN 255 (490)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~ 255 (490)
..+|+++|+|... .++||.++.+++|..+.. .+...+++|.||||+||||.+..+++++-... .-.++++|
T Consensus 14 ~l~wVeKYrP~~l----~dIVGNe~tv~rl~via~----~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 14 QLPWVEKYRPSVL----QDIVGNEDTVERLSVIAK----EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred cchHHHhhCchHH----HHhhCCHHHHHHHHHHHH----cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 4469999999999 999999999999988885 47888999999999999999999999985211 11456676
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc-----CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCC
Q psy200 256 CNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT-----KHKSILLILDEIDALESRKQTILYTIFEWPSIPGS 330 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~-----~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~ 330 (490)
++..+. .+-++..+..+..+ .++..|||+||+|.|....|.+|++.++... ...
T Consensus 86 ASdeRG--------------------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS-~tt 144 (333)
T KOG0991|consen 86 ASDERG--------------------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS-NTT 144 (333)
T ss_pred Cccccc--------------------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-ccc
Confidence 665432 22233333222211 2667799999999999999999999998653 456
Q ss_pred cEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHH
Q psy200 331 KLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRK 410 (490)
Q Consensus 331 ~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ 410 (490)
++.++| | ..+.+.+.+.+||. .+.|..++..++..-+...+..+ +..++++.++.|.- -..||+|+
T Consensus 145 RFalaC--N---~s~KIiEPIQSRCA----iLRysklsd~qiL~Rl~~v~k~E--kv~yt~dgLeaiif---ta~GDMRQ 210 (333)
T KOG0991|consen 145 RFALAC--N---QSEKIIEPIQSRCA----ILRYSKLSDQQILKRLLEVAKAE--KVNYTDDGLEAIIF---TAQGDMRQ 210 (333)
T ss_pred hhhhhh--c---chhhhhhhHHhhhH----hhhhcccCHHHHHHHHHHHHHHh--CCCCCcchHHHhhh---hccchHHH
Confidence 666654 4 24677889999998 79999999999999998888876 57789999998875 67899999
Q ss_pred HHHHHHHHH
Q psy200 411 AIDITNHLI 419 (490)
Q Consensus 411 ai~ll~~a~ 419 (490)
++|.|+..+
T Consensus 211 alNnLQst~ 219 (333)
T KOG0991|consen 211 ALNNLQSTV 219 (333)
T ss_pred HHHHHHHHh
Confidence 999987764
No 18
>KOG2028|consensus
Probab=99.85 E-value=3e-20 Score=176.53 Aligned_cols=223 Identities=14% Similarity=0.257 Sum_probs=168.3
Q ss_pred cchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH
Q psy200 183 KPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA 262 (490)
Q Consensus 183 ~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~ 262 (490)
..++... +++||+++.+.+ ...|...++.+....++||||||||||+||+.++..-. ...+.|+.+++...
T Consensus 131 rmRPktL----~dyvGQ~hlv~q-~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk-~~SyrfvelSAt~a--- 201 (554)
T KOG2028|consen 131 RMRPKTL----DDYVGQSHLVGQ-DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK-KHSYRFVELSATNA--- 201 (554)
T ss_pred hcCcchH----HHhcchhhhcCc-chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC-CCceEEEEEecccc---
Confidence 4444444 888999888877 77777888889999999999999999999999988754 23366777765543
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh---cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 263 ASVYETIVNELKLKPGGKSERHQLGAILKYFD---TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 263 ~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~---~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
...++++.|+++.+ -.+++.||||||||++....|+.+ ++.+..+.|++||+|+
T Consensus 202 ------------------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~f-----LP~VE~G~I~lIGATT 258 (554)
T KOG2028|consen 202 ------------------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTF-----LPHVENGDITLIGATT 258 (554)
T ss_pred ------------------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcc-----cceeccCceEEEeccc
Confidence 34555555555432 236788999999999999999988 7777888999999997
Q ss_pred CCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-----------CCCCCCCHHHHHHHHHHHHHhhCCH
Q psy200 340 ALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-----------DKFNMFNASALQLLAGKVAAVSGDI 408 (490)
Q Consensus 340 ~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-----------~~~~~~~~~~i~~i~~~i~~~~Gd~ 408 (490)
..- --++...|.+||. ++.+++++.+.+..||.+-+... +....+++.+|+.++. .+.||.
T Consensus 259 ENP-SFqln~aLlSRC~----VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~---lsdGDa 330 (554)
T KOG2028|consen 259 ENP-SFQLNAALLSRCR----VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAY---LSDGDA 330 (554)
T ss_pred CCC-ccchhHHHHhccc----eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHH---hcCchH
Confidence 432 3345678889996 89999999999999999855422 0112467788888886 788999
Q ss_pred HHHHHHHHHHHHHH-HhccccCCcccccCHHHHHHHHHHh
Q psy200 409 RKAIDITNHLIDLT-YDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 409 r~ai~ll~~a~~~a-~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
|.++|.|+.++.++ .+.++. ....++++|+.+++..-
T Consensus 331 R~aLN~Lems~~m~~tr~g~~--~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 331 RAALNALEMSLSMFCTRSGQS--SRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHHHHHHhhcCCc--ccceecHHHHHHHHhhc
Confidence 99999999886544 333422 24579999999988753
No 19
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=1.6e-20 Score=194.64 Aligned_cols=220 Identities=16% Similarity=0.214 Sum_probs=154.6
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCC---ceEEEEe
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDA---FKTIYIN 255 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~---~~~~~v~ 255 (490)
.+.++|++... ++++|++..++.|..++.. +.-.+.+||+|++|+||||+++.+++.+.+... .....-.
T Consensus 5 vLarKYRPqtF----ddVIGQe~vv~~L~~al~~---gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 5 VLARKWRPRDF----TTLVGQEHVVRALTHALEQ---QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hHHHHhCCCcH----HHHcCcHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 34557777777 9999999999999998874 344566799999999999999999999864210 0001112
Q ss_pred ccCCCCHHHHHHH-HHHHhcCC-CCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCc
Q psy200 256 CNSVRNAASVYET-IVNELKLK-PGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSK 331 (490)
Q Consensus 256 ~~~~~~~~~l~~~-i~~~l~~~-~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~ 331 (490)
|..+.+...+... ..+-+... ....+.+++++.+..... ..++..|+||||+|.|....++.|++.++. ...+
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE---PP~~ 154 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE---PPEH 154 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc---CCCC
Confidence 2222221111100 00000001 112345666665554332 235677999999999998888888777764 3456
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
++||.+|| ...++.+.|++||. .+.|.+++.+++.+.|.+.+..+ ...+++++++.|++ ...|++|.+
T Consensus 155 v~FILaTt---ep~kLlpTIrSRCq----~f~f~~ls~eei~~~L~~Il~~E--gi~~d~eAL~~IA~---~A~Gs~RdA 222 (700)
T PRK12323 155 VKFILATT---DPQKIPVTVLSRCL----QFNLKQMPPGHIVSHLDAILGEE--GIAHEVNALRLLAQ---AAQGSMRDA 222 (700)
T ss_pred ceEEEEeC---ChHhhhhHHHHHHH----hcccCCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHH
Confidence 67777776 35778899999996 89999999999999999999876 35688999999987 788999999
Q ss_pred HHHHHHHHH
Q psy200 412 IDITNHLID 420 (490)
Q Consensus 412 i~ll~~a~~ 420 (490)
++++.+++.
T Consensus 223 LsLLdQaia 231 (700)
T PRK12323 223 LSLTDQAIA 231 (700)
T ss_pred HHHHHHHHH
Confidence 999988764
No 20
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=9.4e-20 Score=194.69 Aligned_cols=217 Identities=16% Similarity=0.219 Sum_probs=150.5
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.+.++|+|... ++|+|++..++.|..++.. +.-++.++|+||+||||||+|+.+++.+.+..... ...|..
T Consensus 5 ~LaeKyRP~tF----ddIIGQe~Iv~~LknaI~~---~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~--~~pCg~ 75 (944)
T PRK14949 5 VLARKWRPATF----EQMVGQSHVLHALTNALTQ---QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVT--ATPCGV 75 (944)
T ss_pred hHHHHhCCCCH----HHhcCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCC--CCCCCC
Confidence 34557777777 9999999999998888863 23444568999999999999999999986331110 012222
Q ss_pred CCCHHHHHHHH---HHHhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 259 VRNAASVYETI---VNELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 259 ~~~~~~l~~~i---~~~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
+.+...+.... +..+... ...+.+.+++.+..... ..++..||||||+|.|....++.|+..++. ....++
T Consensus 76 C~sC~~i~~g~~~DviEidAa-s~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE---PP~~vr 151 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAA-SRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE---PPEHVK 151 (944)
T ss_pred chHHHHHhcCCCceEEEeccc-cccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc---cCCCeE
Confidence 21111111000 0001100 01234445444433221 125677999999999998888888888874 344566
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
||++|+. ...+.+.|++||. .+.|.+++.+++.++|.+++..+ ...+++++++.|++ ...|++|.+++
T Consensus 152 FILaTTe---~~kLl~TIlSRCq----~f~fkpLs~eEI~~~L~~il~~E--gI~~edeAL~lIA~---~S~Gd~R~ALn 219 (944)
T PRK14949 152 FLLATTD---PQKLPVTVLSRCL----QFNLKSLTQDEIGTQLNHILTQE--QLPFEAEALTLLAK---AANGSMRDALS 219 (944)
T ss_pred EEEECCC---chhchHHHHHhhe----EEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHH
Confidence 6666653 4457788999995 89999999999999999999876 46789999999998 78899999999
Q ss_pred HHHHHHH
Q psy200 414 ITNHLID 420 (490)
Q Consensus 414 ll~~a~~ 420 (490)
+|.+++.
T Consensus 220 LLdQala 226 (944)
T PRK14949 220 LTDQAIA 226 (944)
T ss_pred HHHHHHH
Confidence 9998873
No 21
>KOG0730|consensus
Probab=99.84 E-value=7.1e-20 Score=186.67 Aligned_cols=224 Identities=20% Similarity=0.236 Sum_probs=173.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++-|.++...+|.+.+...+.. .++++||+|||||||||++|++++++.+ ..|+.+.+....+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~----~nFlsvkgpEL~s--- 506 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG----MNFLSVKGPELFS--- 506 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc----CCeeeccCHHHHH---
Confidence 78889999999999877765432 4789999999999999999999999965 6778887665433
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-------H-HHHHHhHhC-C-CCCCCcEEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-------Q-TILYTIFEW-P-SIPGSKLVL 334 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-------~-~~L~~l~~~-~-~~~~~~vil 334 (490)
.|.|.++..+++.|.++.. ..|+|||+||||.+...+ + ..|.+++.. . .....+|+|
T Consensus 507 -----------k~vGeSEr~ir~iF~kAR~--~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 507 -----------KYVGESERAIREVFRKARQ--VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred -----------HhcCchHHHHHHHHHHHhh--cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 7888999999999998776 457999999999997664 3 334444422 2 234568999
Q ss_pred EEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCH-HHHHHHHHHHHHhhCCHHHH
Q psy200 335 VGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNA-SALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~-~~i~~i~~~i~~~~Gd~r~a 411 (490)
|++||+ ++.+++++.+ ||. ..|++++++.+...+||+..+++. .+.+ -.++.|++.+.+++| ..+
T Consensus 574 iAATNR---pd~ID~ALlRPGRlD---~iiyVplPD~~aR~~Ilk~~~kkm----p~~~~vdl~~La~~T~g~SG--Ael 641 (693)
T KOG0730|consen 574 IAATNR---PDMIDPALLRPGRLD---RIIYVPLPDLEARLEILKQCAKKM----PFSEDVDLEELAQATEGYSG--AEI 641 (693)
T ss_pred EeccCC---hhhcCHHHcCCcccc---eeEeecCccHHHHHHHHHHHHhcC----CCCccccHHHHHHHhccCCh--HHH
Confidence 999996 4556667766 676 689999999999999999998876 2333 368888885555554 455
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
.++|+.|...|.++.-+ ...|..+||.+|+..+.....
T Consensus 642 ~~lCq~A~~~a~~e~i~---a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 642 VAVCQEAALLALRESIE---ATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred HHHHHHHHHHHHHHhcc---cccccHHHHHHHHHhhcccCC
Confidence 67999999999887643 678999999999998875543
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=8.6e-20 Score=189.72 Aligned_cols=234 Identities=14% Similarity=0.198 Sum_probs=159.8
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
+..+|+|... ++++|++..++.|..++.. +...+.++|+||+|+||||+|+.+++.+.+..... ...|..+
T Consensus 5 LarKyRPktF----ddVIGQe~vv~~L~~aI~~---grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~--~~pCg~C 75 (702)
T PRK14960 5 LARKYRPRNF----NELVGQNHVSRALSSALER---GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT--STPCEVC 75 (702)
T ss_pred HHHHhCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC--CCCCccC
Confidence 4457787777 9999999999999888863 34467789999999999999999999986322110 1112222
Q ss_pred CCHHHHHHHHHHHh-cCC-CCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 260 RNAASVYETIVNEL-KLK-PGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 260 ~~~~~l~~~i~~~l-~~~-~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
.+...+-..-.-++ ... ....+.+++++.+..... ..++..|+||||+|.|....++.|..+++.. ...+.||
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP---P~~v~FI 152 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP---PEHVKFL 152 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC---CCCcEEE
Confidence 11111110000000 000 011235555555443221 1245679999999999988888888887743 3345555
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
++++. ...+...+.+||. .+.|.+++.+++.+++.+.+..+ ...++++++..|++ ...|++|.++++|
T Consensus 153 LaTtd---~~kIp~TIlSRCq----~feFkpLs~eEI~k~L~~Il~kE--gI~id~eAL~~IA~---~S~GdLRdALnLL 220 (702)
T PRK14960 153 FATTD---PQKLPITVISRCL----QFTLRPLAVDEITKHLGAILEKE--QIAADQDAIWQIAE---SAQGSLRDALSLT 220 (702)
T ss_pred EEECC---hHhhhHHHHHhhh----eeeccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 55552 3455677889996 89999999999999999999887 46789999999998 7789999999999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
.+++.. .. ..|+.++|...+..
T Consensus 221 DQaIay--g~-------g~IT~edV~~lLG~ 242 (702)
T PRK14960 221 DQAIAY--GQ-------GAVHHQDVKEMLGL 242 (702)
T ss_pred HHHHHh--cC-------CCcCHHHHHHHhcc
Confidence 888643 22 35777777776543
No 23
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=2e-19 Score=185.98 Aligned_cols=242 Identities=17% Similarity=0.222 Sum_probs=169.2
Q ss_pred cCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc--eEEEEe
Q psy200 178 LFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF--KTIYIN 255 (490)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~--~~~~v~ 255 (490)
..|..+|+|... ++++|++..+..|...+.. +..++.++|+||+|+||||+|+.+++.+...... ......
T Consensus 9 ~~la~kyRP~~f----~dliGq~~vv~~L~~ai~~---~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 9 IPFARKYRPSNF----AELQGQEVLVKVLSYTILN---DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred cchhhhhCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 367778888888 9999999999988887753 3456789999999999999999999998632110 001112
Q ss_pred ccCCCCHHHHHHHHHH---HhcCCCCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCC
Q psy200 256 CNSVRNAASVYETIVN---ELKLKPGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGS 330 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~---~l~~~~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~ 330 (490)
|..+.+...+...... .+.. ....+.+++.+.+..+... .++..|+||||+|.|....++.|...++. ...
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eida-as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe---pp~ 157 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDA-ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE---PPP 157 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeec-cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh---cCC
Confidence 2222222221110000 0111 1123456666665554321 24567999999999988777777777663 345
Q ss_pred cEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHH
Q psy200 331 KLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRK 410 (490)
Q Consensus 331 ~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ 410 (490)
.++||.+|+. .+.+.+.+++||. .+.|.+++.+++..++..++..+ ...+++++++.|++ ...|++|.
T Consensus 158 ~~vfI~aTte---~~kI~~tI~SRc~----~~ef~~ls~~el~~~L~~i~~~e--gi~ie~eAL~~Ia~---~s~GslR~ 225 (507)
T PRK06645 158 HIIFIFATTE---VQKIPATIISRCQ----RYDLRRLSFEEIFKLLEYITKQE--NLKTDIEALRIIAY---KSEGSARD 225 (507)
T ss_pred CEEEEEEeCC---hHHhhHHHHhcce----EEEccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHH
Confidence 6666666653 4567788999995 79999999999999999999887 45689999999997 77899999
Q ss_pred HHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 411 AIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 411 ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
++++|+.++.++...+ ..|+.++|.+.+....
T Consensus 226 al~~Ldkai~~~~~~~------~~It~~~V~~llg~~~ 257 (507)
T PRK06645 226 AVSILDQAASMSAKSD------NIISPQVINQMLGLVD 257 (507)
T ss_pred HHHHHHHHHHhhccCC------CCcCHHHHHHHHCCCC
Confidence 9999999987664332 2578888777665443
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=164.77 Aligned_cols=219 Identities=18% Similarity=0.224 Sum_probs=156.0
Q ss_pred CCCCChHHHHHHHHHH---HHhhh--ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQF---LLGHV--NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~---L~~~~--~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
++++|+++......-+ |++-- ....++++|+|||||||||++|++++++.. .+++.+++..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k----vp~l~vkat~l--------- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK----VPLLLVKATEL--------- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC----CceEEechHHH---------
Confidence 8999999888765443 33211 123678999999999999999999999854 77777765433
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--H----------HHHHHhHhCCCCCCCcEEEEE
Q psy200 269 IVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--Q----------TILYTIFEWPSIPGSKLVLVG 336 (490)
Q Consensus 269 i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--~----------~~L~~l~~~~~~~~~~vilI~ 336 (490)
-+...|.....+.+.+..+.+ ..|||+||||+|.+.-.+ | ++|+.-++- -..+-.++.||
T Consensus 188 -----iGehVGdgar~Ihely~rA~~--~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg-i~eneGVvtIa 259 (368)
T COG1223 188 -----IGEHVGDGARRIHELYERARK--AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG-IKENEGVVTIA 259 (368)
T ss_pred -----HHHHhhhHHHHHHHHHHHHHh--cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC-cccCCceEEEe
Confidence 223344555566666665554 459999999999986332 1 223222221 23567899999
Q ss_pred ecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHH-HHH
Q psy200 337 VANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI-DIT 415 (490)
Q Consensus 337 ~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai-~ll 415 (490)
+||. ++.+++.+++||. ..|.|.-++.+|...|+...+... ...++.. ++.++.+..+.+| |.+. .+|
T Consensus 260 aTN~---p~~LD~aiRsRFE---eEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~-~~~~~~~t~g~Sg--Rdikekvl 328 (368)
T COG1223 260 ATNR---PELLDPAIRSRFE---EEIEFKLPNDEERLEILEYYAKKF--PLPVDAD-LRYLAAKTKGMSG--RDIKEKVL 328 (368)
T ss_pred ecCC---hhhcCHHHHhhhh---heeeeeCCChHHHHHHHHHHHHhC--CCccccC-HHHHHHHhCCCCc--hhHHHHHH
Confidence 9995 4557789999998 589999999999999999999876 3333333 6777763323332 3443 389
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
+.|+..|..++ ...|+.+|+..|+.+...
T Consensus 329 K~aLh~Ai~ed-----~e~v~~edie~al~k~r~ 357 (368)
T COG1223 329 KTALHRAIAED-----REKVEREDIEKALKKERK 357 (368)
T ss_pred HHHHHHHHHhc-----hhhhhHHHHHHHHHhhcc
Confidence 99999999998 779999999999997443
No 25
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=1.1e-19 Score=189.36 Aligned_cols=237 Identities=17% Similarity=0.214 Sum_probs=163.2
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.|.++|+|... ++++|++..++.|..++.. +.-++.++++||+|+|||++|+.+++.+.+..... .-.|..
T Consensus 5 ~l~~kyRP~~f----~divGq~~v~~~L~~~~~~---~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--~~pCg~ 75 (509)
T PRK14958 5 VLARKWRPRCF----QEVIGQAPVVRALSNALDQ---QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS--ANPCND 75 (509)
T ss_pred hHHHHHCCCCH----HHhcCCHHHHHHHHHHHHh---CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC--cccCCC
Confidence 35567888777 9999999999999998864 34455679999999999999999999986432211 112222
Q ss_pred CCCHHHHHHHHHHHh-cCC-CCCCcHHHHHHHHHHHH--hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEE
Q psy200 259 VRNAASVYETIVNEL-KLK-PGGKSERHQLGAILKYF--DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 259 ~~~~~~l~~~i~~~l-~~~-~~~~s~~~~~~~l~~~l--~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vil 334 (490)
+.+...+-..-.-++ ... ......+++++.+.... ...++..|+||||+|.|....++.|...++.+ ...++|
T Consensus 76 C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep---p~~~~f 152 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP---PSHVKF 152 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc---CCCeEE
Confidence 221111100000000 000 11234555555544322 12356679999999999988888888877743 345666
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
|.+|+. ...+...+.+||. .+.|.+++.+++.+.+.+.+..+ ...+++++++.|++ ...|++|.++++
T Consensus 153 Ilattd---~~kl~~tI~SRc~----~~~f~~l~~~~i~~~l~~il~~e--gi~~~~~al~~ia~---~s~GslR~al~l 220 (509)
T PRK14958 153 ILATTD---HHKLPVTVLSRCL----QFHLAQLPPLQIAAHCQHLLKEE--NVEFENAALDLLAR---AANGSVRDALSL 220 (509)
T ss_pred EEEECC---hHhchHHHHHHhh----hhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCcHHHHHHH
Confidence 666652 4566778999995 79999999999999999999887 35689999999987 678999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
|++++.. .. ..|+.++|...+....
T Consensus 221 Ldq~ia~--~~-------~~It~~~V~~~lg~~~ 245 (509)
T PRK14958 221 LDQSIAY--GN-------GKVLIADVKTMLGTIE 245 (509)
T ss_pred HHHHHhc--CC-------CCcCHHHHHHHHCCCC
Confidence 9988643 22 3677777777665443
No 26
>PRK04195 replication factor C large subunit; Provisional
Probab=99.83 E-value=2.9e-19 Score=186.91 Aligned_cols=198 Identities=19% Similarity=0.304 Sum_probs=147.0
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
+|.++|+|... ++++|+++.++.|..|+..+..+...++++|+||||+|||++|++++++++ +.++.+|++.
T Consensus 3 ~W~eKyrP~~l----~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTL----SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEVIELNASD 74 (482)
T ss_pred CchhhcCCCCH----HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCEEEEcccc
Confidence 79999999998 999999999999999999877655688999999999999999999999975 7788898876
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc----CHHHHHHhHhCCCCCCCcEEE
Q psy200 259 VRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR----KQTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 259 ~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~----~~~~L~~l~~~~~~~~~~vil 334 (490)
..+... +..++....... . +. +.+..||||||+|.|... ....|..+++ .....+|+
T Consensus 75 ~r~~~~-i~~~i~~~~~~~-------------s-l~-~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIl 135 (482)
T PRK04195 75 QRTADV-IERVAGEAATSG-------------S-LF-GARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIIL 135 (482)
T ss_pred cccHHH-HHHHHHHhhccC-------------c-cc-CCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEE
Confidence 543322 222222111000 0 00 124679999999999763 2455555554 23334444
Q ss_pred EEecCCCChhHhhhH-HhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 335 VGVANALDLTDRMLP-RLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 335 I~~tn~~~~~~~l~~-~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
++|.. ..+.. .+++||. .+.|.+++..++..++...+... ...+++++++.|++ ...||+|.+++
T Consensus 136 --i~n~~---~~~~~k~Lrsr~~----~I~f~~~~~~~i~~~L~~i~~~e--gi~i~~eaL~~Ia~---~s~GDlR~ain 201 (482)
T PRK04195 136 --TANDP---YDPSLRELRNACL----MIEFKRLSTRSIVPVLKRICRKE--GIECDDEALKEIAE---RSGGDLRSAIN 201 (482)
T ss_pred --eccCc---cccchhhHhccce----EEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHH
Confidence 45532 12222 6777775 79999999999999999999876 45689999999998 77899999999
Q ss_pred HHHH
Q psy200 414 ITNH 417 (490)
Q Consensus 414 ll~~ 417 (490)
.|+.
T Consensus 202 ~Lq~ 205 (482)
T PRK04195 202 DLQA 205 (482)
T ss_pred HHHH
Confidence 8876
No 27
>KOG0738|consensus
Probab=99.83 E-value=2.1e-19 Score=172.25 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=161.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|..+.++-|.+.+.--+. ..+.++||++||||||||+||++|+.+++ ..|+-|+.+.+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~----tTFFNVSsstl------ 281 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG----TTFFNVSSSTL------ 281 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc----CeEEEechhhh------
Confidence 7899999999888886543221 23678999999999999999999999975 45555554443
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-------------HHHHHHhHhCC-CCCC-C
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-------------QTILYTIFEWP-SIPG-S 330 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-------------~~~L~~l~~~~-~~~~-~ 330 (490)
..+|.|.+++-++-.|.-+.. ..|.+|||||||.|+..+ .++|.++-... ...+ .
T Consensus 282 --------tSKwRGeSEKlvRlLFemARf--yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k 351 (491)
T KOG0738|consen 282 --------TSKWRGESEKLVRLLFEMARF--YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSK 351 (491)
T ss_pred --------hhhhccchHHHHHHHHHHHHH--hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccce
Confidence 237888888877777765444 558899999999998653 12333322221 1122 3
Q ss_pred cEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHH
Q psy200 331 KLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRK 410 (490)
Q Consensus 331 ~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ 410 (490)
.|+|+++|| +++.|++++++||. ++|.++-++.+....+|+..+... ...++-.++.|+++..+++|+ .
T Consensus 352 ~VmVLAATN---~PWdiDEAlrRRlE---KRIyIPLP~~~~R~~Li~~~l~~~---~~~~~~~~~~lae~~eGySGa--D 420 (491)
T KOG0738|consen 352 VVMVLAATN---FPWDIDEALRRRLE---KRIYIPLPDAEARSALIKILLRSV---ELDDPVNLEDLAERSEGYSGA--D 420 (491)
T ss_pred eEEEEeccC---CCcchHHHHHHHHh---hheeeeCCCHHHHHHHHHHhhccc---cCCCCccHHHHHHHhcCCChH--H
Confidence 466677787 67888888999987 689999999999999999888765 344566678888877677774 2
Q ss_pred HHHHHHHHHHHHHhcccc------------CCcccccCHHHHHHHHHHhccCcc
Q psy200 411 AIDITNHLIDLTYDNVKE------------NGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 411 ai~ll~~a~~~a~~~~~~------------~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+-++|+.|.+++.++.-. +.....|+..||+.|+..+.++..
T Consensus 421 I~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 421 ITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 335788887777653211 012356999999999999887654
No 28
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.83 E-value=3.9e-19 Score=182.42 Aligned_cols=213 Identities=20% Similarity=0.287 Sum_probs=157.8
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHH---HHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEG---IRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~---l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
+|.++|+|... ++++|+++.+.. |..++. .+...+++|+|||||||||+|+.+++.+. ..++.++
T Consensus 1 pla~~~RP~~l----~d~vGq~~~v~~~~~L~~~i~----~~~~~~ilL~GppGtGKTtLA~~ia~~~~----~~~~~l~ 68 (413)
T PRK13342 1 PLAERMRPKTL----DEVVGQEHLLGPGKPLRRMIE----AGRLSSMILWGPPGTGKTTLARIIAGATD----APFEALS 68 (413)
T ss_pred ChhhhhCCCCH----HHhcCcHHHhCcchHHHHHHH----cCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEe
Confidence 35667888777 899999998776 666664 46677899999999999999999999864 4566776
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 256 CNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
+... . ...+.+.+..+.. ..++..||||||+|.+....++.|...++ ...++
T Consensus 69 a~~~-~--------------------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le-----~~~ii 122 (413)
T PRK13342 69 AVTS-G--------------------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE-----DGTIT 122 (413)
T ss_pred cccc-c--------------------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh-----cCcEE
Confidence 5432 1 1222222222211 12457799999999998888888877665 24577
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFN-MFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~-~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
+|++++.. ....+.+.+.+||. .+.|.+++.+++..++.+.+....... .+++++++.+++ ...||+|.++
T Consensus 123 lI~att~n-~~~~l~~aL~SR~~----~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~---~s~Gd~R~al 194 (413)
T PRK13342 123 LIGATTEN-PSFEVNPALLSRAQ----VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALAR---LANGDARRAL 194 (413)
T ss_pred EEEeCCCC-hhhhccHHHhccce----eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH---hCCCCHHHHH
Confidence 77776532 23456789999995 799999999999999999876532222 689999999987 5689999999
Q ss_pred HHHHHHHHHHHhccccCCcccccCHHHHHHHHHHh
Q psy200 413 DITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 413 ~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
++++.++.. + ..|+.+++..++...
T Consensus 195 n~Le~~~~~----~------~~It~~~v~~~~~~~ 219 (413)
T PRK13342 195 NLLELAALG----V------DSITLELLEEALQKR 219 (413)
T ss_pred HHHHHHHHc----c------CCCCHHHHHHHHhhh
Confidence 999988754 2 268999998888764
No 29
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=6.1e-19 Score=181.80 Aligned_cols=235 Identities=20% Similarity=0.231 Sum_probs=157.7
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.|.++|+|... ++++|++.....|..++.. +..++.++|+|||||||||+|+.+++.+...... .+..|..
T Consensus 3 ~l~~kyRP~~~----~divGq~~i~~~L~~~i~~---~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~--~~~pc~~ 73 (472)
T PRK14962 3 ALYRKYRPKTF----SEVVGQDHVKKLIINALKK---NSISHAYIFAGPRGTGKTTVARILAKSLNCENRK--GVEPCNE 73 (472)
T ss_pred hhHHHHCCCCH----HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCC--CCCCCcc
Confidence 45668888887 9999999998888777753 3344568999999999999999999987532110 0111111
Q ss_pred CCCHHHHHHH---HHHHhcCCCCCCcHHHHHHHHHHHH--hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 259 VRNAASVYET---IVNELKLKPGGKSERHQLGAILKYF--DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 259 ~~~~~~l~~~---i~~~l~~~~~~~s~~~~~~~l~~~l--~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
+.+...+... -...+.. ....+.+.+++...... ...++..||||||+|.|....++.|...++. ....++
T Consensus 74 c~~c~~i~~g~~~dv~el~a-a~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~---p~~~vv 149 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDA-ASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE---PPSHVV 149 (472)
T ss_pred cHHHHHHhcCCCCccEEEeC-cccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh---CCCcEE
Confidence 1111111000 0000000 01122344443222211 1124567999999999987777777777663 334677
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
+|++++. ...+.+++.+||. .+.|.+++.+++..++...+... ...+++++++.|++ ...||+|.+++
T Consensus 150 ~Ilattn---~~kl~~~L~SR~~----vv~f~~l~~~el~~~L~~i~~~e--gi~i~~eal~~Ia~---~s~GdlR~aln 217 (472)
T PRK14962 150 FVLATTN---LEKVPPTIISRCQ----VIEFRNISDELIIKRLQEVAEAE--GIEIDREALSFIAK---RASGGLRDALT 217 (472)
T ss_pred EEEEeCC---hHhhhHHHhcCcE----EEEECCccHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HhCCCHHHHHH
Confidence 7766652 3467788999995 89999999999999999998776 45789999999997 67899999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHHHHh
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
.|+.++..+ .+ .|+.+++..++...
T Consensus 218 ~Le~l~~~~--~~-------~It~e~V~~~l~~~ 242 (472)
T PRK14962 218 MLEQVWKFS--EG-------KITLETVHEALGLI 242 (472)
T ss_pred HHHHHHHhc--CC-------CCCHHHHHHHHcCC
Confidence 998876432 22 48888888877544
No 30
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.9e-19 Score=187.56 Aligned_cols=233 Identities=16% Similarity=0.244 Sum_probs=159.6
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
|+++|+|... ++++|++..++.|..++.. +.-++.++|+||+|+||||+|+.+++.+.+..... ...|..+
T Consensus 3 l~~kyRP~~f----~eivGq~~i~~~L~~~i~~---~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--~~pCg~C 73 (584)
T PRK14952 3 LYRKYRPATF----AEVVGQEHVTEPLSSALDA---GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT--ATPCGVC 73 (584)
T ss_pred HHHHhCCCcH----HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC--CCccccc
Confidence 4568888888 9999999999999998864 23445578999999999999999999886321100 0122222
Q ss_pred CCHHHHHHHH---HHHhcCCC-CCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 260 RNAASVYETI---VNELKLKP-GGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 260 ~~~~~l~~~i---~~~l~~~~-~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
.+...+...- .+-+.... ...+.+++++....... ..++..|+||||+|.|....++.|+..++. ....++
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE---pp~~~~ 150 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE---PPEHLI 150 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc---CCCCeE
Confidence 2211111000 00000000 11234555443333221 124566999999999998888888888874 344677
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
||++|+. ...+.+.+++||. .+.|.+++.+++.++|..++..+ ...++++++..|++ ...|++|.+++
T Consensus 151 fIL~tte---~~kll~TI~SRc~----~~~F~~l~~~~i~~~L~~i~~~e--gi~i~~~al~~Ia~---~s~GdlR~aln 218 (584)
T PRK14952 151 FIFATTE---PEKVLPTIRSRTH----HYPFRLLPPRTMRALIARICEQE--GVVVDDAVYPLVIR---AGGGSPRDTLS 218 (584)
T ss_pred EEEEeCC---hHhhHHHHHHhce----EEEeeCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHH
Confidence 7776753 4678889999985 89999999999999999999887 35689999999987 77899999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
+|+.++.... . ..|+.+++...+
T Consensus 219 ~Ldql~~~~~-~-------~~It~~~v~~ll 241 (584)
T PRK14952 219 VLDQLLAGAA-D-------THVTYQRALGLL 241 (584)
T ss_pred HHHHHHhccC-C-------CCcCHHHHHHHH
Confidence 9999865432 1 256666666554
No 31
>KOG0734|consensus
Probab=99.82 E-value=3.5e-19 Score=176.55 Aligned_cols=221 Identities=14% Similarity=0.153 Sum_probs=162.0
Q ss_pred CCCCChHHHHHHHHHHHHhh--------hccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGH--------VNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~--------~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
+++.|.++..++|.+.+.-. +.+.-+++|||+||||||||.||++++-+. +++|++..++++
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----~VPFF~~sGSEF------ 373 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----GVPFFYASGSEF------ 373 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----CCCeEeccccch------
Confidence 67888877666666554422 223467899999999999999999999884 488888877765
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC----H----HHHHHhH-hCC-CCCCCcEEEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK----Q----TILYTIF-EWP-SIPGSKLVLV 335 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~----~----~~L~~l~-~~~-~~~~~~vilI 335 (490)
...+.|.....+++.|..+.+ ..||||||||||.+...+ + ..|.+++ ++. ...+..||||
T Consensus 374 --------dEm~VGvGArRVRdLF~aAk~--~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvi 443 (752)
T KOG0734|consen 374 --------DEMFVGVGARRVRDLFAAAKA--RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVI 443 (752)
T ss_pred --------hhhhhcccHHHHHHHHHHHHh--cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEE
Confidence 224566778889999887766 569999999999997663 1 2233332 332 4457789999
Q ss_pred EecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCC-HHHHH
Q psy200 336 GVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGD-IRKAI 412 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd-~r~ai 412 (490)
++||. ++.+++.|-+ ||. .++.++.++..-..+||..++.+......++ ...|++ ++.|- -..+-
T Consensus 444 gATNf---pe~LD~AL~RPGRFD---~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD---~~iiAR---GT~GFsGAdLa 511 (752)
T KOG0734|consen 444 GATNF---PEALDKALTRPGRFD---RHVTVPLPDVRGRTEILKLYLSKIPLDEDVD---PKIIAR---GTPGFSGADLA 511 (752)
T ss_pred eccCC---hhhhhHHhcCCCccc---eeEecCCCCcccHHHHHHHHHhcCCcccCCC---HhHhcc---CCCCCchHHHH
Confidence 99994 5555555542 555 5899999999999999999998763222333 566776 66663 23445
Q ss_pred HHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCc
Q psy200 413 DITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 413 ~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~ 451 (490)
|++.+|...|..++ ...|+|.+++.|-..+.-.+
T Consensus 512 NlVNqAAlkAa~dg-----a~~VtM~~LE~akDrIlMG~ 545 (752)
T KOG0734|consen 512 NLVNQAALKAAVDG-----AEMVTMKHLEFAKDRILMGP 545 (752)
T ss_pred HHHHHHHHHHHhcC-----cccccHHHHhhhhhheeecc
Confidence 78999999999998 78999999999999876443
No 32
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=2.9e-19 Score=194.27 Aligned_cols=217 Identities=15% Similarity=0.203 Sum_probs=152.4
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
|.++|++... ++|+|++..++.|..++.. +...+.+||+||+|||||++++.|++.+.+..... .-.|..+
T Consensus 5 l~~KyRP~~f----~eiiGqe~v~~~L~~~i~~---~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~--~~pCg~C 75 (824)
T PRK07764 5 LYRRYRPATF----AEVIGQEHVTEPLSTALDS---GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPT--STPCGEC 75 (824)
T ss_pred HHHHhCCCCH----HHhcCcHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCC--CCCCccc
Confidence 4578888888 9999999999999988864 33445689999999999999999999986422110 0123333
Q ss_pred CCHHHHHHHHHHH--h-cCCC-CCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 260 RNAASVYETIVNE--L-KLKP-GGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 260 ~~~~~l~~~i~~~--l-~~~~-~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
.+...+...-... + .... .....+++++....... ..++..|+||||+|.|....++.|+++++. ....++
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE---pP~~~~ 152 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE---PPEHLK 152 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC---CCCCeE
Confidence 2222211100000 0 0000 11235555554333221 124567999999999999888888888874 334666
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
||++++. .+.+++.|++||. .+.|.+++.+++.++|...|..+ ...++++++..|++ ...|++|.+++
T Consensus 153 fIl~tt~---~~kLl~TIrSRc~----~v~F~~l~~~~l~~~L~~il~~E--Gv~id~eal~lLa~---~sgGdlR~Al~ 220 (824)
T PRK07764 153 FIFATTE---PDKVIGTIRSRTH----HYPFRLVPPEVMRGYLERICAQE--GVPVEPGVLPLVIR---AGGGSVRDSLS 220 (824)
T ss_pred EEEEeCC---hhhhhHHHHhhee----EEEeeCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHH
Confidence 6666653 4568889999995 89999999999999999999887 35689999999987 67899999999
Q ss_pred HHHHHHH
Q psy200 414 ITNHLID 420 (490)
Q Consensus 414 ll~~a~~ 420 (490)
+|++++.
T Consensus 221 eLEKLia 227 (824)
T PRK07764 221 VLDQLLA 227 (824)
T ss_pred HHHHHHh
Confidence 9998763
No 33
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=3.3e-19 Score=188.06 Aligned_cols=230 Identities=18% Similarity=0.227 Sum_probs=158.1
Q ss_pred CCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC
Q psy200 181 EDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR 260 (490)
Q Consensus 181 ~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~ 260 (490)
.++|+|... ++++|++..++.|...+.. +.-.+.++|+|++|+||||+|+.+++.+.+...+ ....|..+.
T Consensus 7 a~KyRP~~f----~divGQe~vv~~L~~~l~~---~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~--~~~pCg~C~ 77 (647)
T PRK07994 7 ARKWRPQTF----AEVVGQEHVLTALANALDL---GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI--TATPCGECD 77 (647)
T ss_pred HHHhCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC--CCCCCCCCH
Confidence 346666666 8999999999988888863 2344556899999999999999999998643211 111333332
Q ss_pred CHHHHHHHHH---HHhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 261 NAASVYETIV---NELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 261 ~~~~l~~~i~---~~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
....+...-. ..+... ...+.+++++.+..... ..++..|+||||+|.|....++.|+..++. ....++||
T Consensus 78 ~C~~i~~g~~~D~ieidaa-s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE---Pp~~v~FI 153 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAA-SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE---PPEHVKFL 153 (647)
T ss_pred HHHHHHcCCCCCceeeccc-ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc---CCCCeEEE
Confidence 2111110000 000101 01345556555544321 135677999999999998888999888874 34456666
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
++|+. ...+.+.+++||. .+.|.+++.+++..+|.+++..+ ...++++++..|++ ...|++|.+++++
T Consensus 154 L~Tt~---~~kLl~TI~SRC~----~~~f~~Ls~~ei~~~L~~il~~e--~i~~e~~aL~~Ia~---~s~Gs~R~Al~ll 221 (647)
T PRK07994 154 LATTD---PQKLPVTILSRCL----QFHLKALDVEQIRQQLEHILQAE--QIPFEPRALQLLAR---AADGSMRDALSLT 221 (647)
T ss_pred EecCC---ccccchHHHhhhe----EeeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 66663 4567788999995 89999999999999999999876 35689999999987 7889999999999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++++.. ..+ .|+.++|...+
T Consensus 222 dqaia~--~~~-------~it~~~v~~~l 241 (647)
T PRK07994 222 DQAIAS--GNG-------QVTTDDVSAML 241 (647)
T ss_pred HHHHHh--cCC-------CcCHHHHHHHH
Confidence 988643 222 45665555544
No 34
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=4.3e-19 Score=185.55 Aligned_cols=234 Identities=13% Similarity=0.217 Sum_probs=158.6
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.|.++|++... ++++|++..++.|..++.. +.-.+.+||+||+|+|||++|+.+++.+...... ....|..
T Consensus 5 ~la~KyRP~sf----~dIiGQe~v~~~L~~ai~~---~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~--~~~pCg~ 75 (624)
T PRK14959 5 SLTARYRPQTF----AEVAGQETVKAILSRAAQE---NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAP--TGEPCNT 75 (624)
T ss_pred hHHHHhCCCCH----HHhcCCHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhccccCCC--CCCCCcc
Confidence 56778888888 9999999998888888863 2346788899999999999999999998632110 0012222
Q ss_pred CCCHHHHHHHHHHHhc-CC-CCCCcHHHHHHHHHHHHh---cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 259 VRNAASVYETIVNELK-LK-PGGKSERHQLGAILKYFD---TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 259 ~~~~~~l~~~i~~~l~-~~-~~~~s~~~~~~~l~~~l~---~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
+.+...+.....-++. .. ......+.+.. +.+.+. ..++..||||||+|.|....++.|...++. ....++
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE---P~~~~i 151 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE---PPARVT 151 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc---cCCCEE
Confidence 2222222111000000 00 00122333333 222221 124567999999999988777888777764 334677
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
||++|+. ...+...+++||. .+.|.+++.+++..+|...+..+ ...+++++++.|++ ...|++|.+++
T Consensus 152 fILaTt~---~~kll~TI~SRcq----~i~F~pLs~~eL~~~L~~il~~e--gi~id~eal~lIA~---~s~GdlR~Al~ 219 (624)
T PRK14959 152 FVLATTE---PHKFPVTIVSRCQ----HFTFTRLSEAGLEAHLTKVLGRE--GVDYDPAAVRLIAR---RAAGSVRDSMS 219 (624)
T ss_pred EEEecCC---hhhhhHHHHhhhh----ccccCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHH
Confidence 7777763 4566677889986 79999999999999999988876 35589999999998 67799999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
+|++++ +. + ...|+.++|..++..
T Consensus 220 lLeqll--~~--g-----~~~It~d~V~~~lg~ 243 (624)
T PRK14959 220 LLGQVL--AL--G-----ESRLTIDGARGVLGL 243 (624)
T ss_pred HHHHHH--Hh--c-----CCCcCHHHHHHHhCC
Confidence 998764 22 2 236888887766543
No 35
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=3.7e-19 Score=187.36 Aligned_cols=235 Identities=16% Similarity=0.225 Sum_probs=160.2
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc---eEEEEec
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF---KTIYINC 256 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~---~~~~v~~ 256 (490)
|.++|++... ++++|++..++.|..++.. +.-++.+||+|++|+||||+++.+++.+.+.... ....-.|
T Consensus 6 la~KyRP~~f----~dviGQe~vv~~L~~~l~~---~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 6 LARKYRPRSF----SEMVGQEHVVQALTNALTQ---QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HHHHHCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 4567887777 9999999999998888864 3345667999999999999999999998632110 0001123
Q ss_pred cCCCCHHHHHHHHHHHh-cCC-CCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcE
Q psy200 257 NSVRNAASVYETIVNEL-KLK-PGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKL 332 (490)
Q Consensus 257 ~~~~~~~~l~~~i~~~l-~~~-~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~v 332 (490)
..+.+...+...-.-++ ... ....+.+++++.+...... .++..|+||||+|.|....++.|...++. ....+
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE---PP~~~ 155 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE---PPEYL 155 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc---CCCCe
Confidence 33322222211000000 000 1113455666655543211 24567999999999998888887777663 34456
Q ss_pred EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 333 VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
+||.+|+. ...+...+.+||. .+.|.+++.+++.++|.+.+..+ ...+++++++.|++ ...|++|.++
T Consensus 156 ~fIL~Ttd---~~kil~TIlSRc~----~~~f~~Ls~eei~~~L~~i~~~e--gi~ie~~AL~~La~---~s~GslR~al 223 (618)
T PRK14951 156 KFVLATTD---PQKVPVTVLSRCL----QFNLRPMAPETVLEHLTQVLAAE--NVPAEPQALRLLAR---AARGSMRDAL 223 (618)
T ss_pred EEEEEECC---chhhhHHHHHhce----eeecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHH
Confidence 66666652 4556777999985 89999999999999999999877 35689999999998 7889999999
Q ss_pred HHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 413 DITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 413 ~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+++++++... . ..|+.++|.+.+.
T Consensus 224 ~lLdq~ia~~--~-------~~It~~~V~~~Lg 247 (618)
T PRK14951 224 SLTDQAIAFG--S-------GQLQEAAVRQMLG 247 (618)
T ss_pred HHHHHHHHhc--C-------CCcCHHHHHHHHc
Confidence 9998877542 2 2577777766554
No 36
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=3.2e-19 Score=187.17 Aligned_cols=235 Identities=16% Similarity=0.234 Sum_probs=160.3
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
+..+|+|... ++++|++..++.|..++.. +..++.+||+||+|+|||++|+.+++.+.+.... ....|..+
T Consensus 6 LarKYRP~tF----ddIIGQe~vv~~L~~ai~~---~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~--~~~pCg~C 76 (709)
T PRK08691 6 LARKWRPKTF----ADLVGQEHVVKALQNALDE---GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ--HGEPCGVC 76 (709)
T ss_pred HHHHhCCCCH----HHHcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC--CCCCCccc
Confidence 4457777777 9999999999999998874 3446678999999999999999999988633221 11222222
Q ss_pred CCHHHHHHH-HHHHhcCC-CCCCcHHHHHHHHHHHH--hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 260 RNAASVYET-IVNELKLK-PGGKSERHQLGAILKYF--DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 260 ~~~~~l~~~-i~~~l~~~-~~~~s~~~~~~~l~~~l--~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
.....+... ..+-+... ....+.+.+++.+.... -..++..||||||+|.|....++.|+..++.. ...++||
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP---p~~v~fI 153 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP---PEHVKFI 153 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC---CCCcEEE
Confidence 111111100 00000000 11234455555554321 11245679999999999877777787777642 3345556
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
++++. ...+...+++||. .+.|.+++.+++..+|.+++..+ ...+++++++.|++ ...|++|.++++|
T Consensus 154 LaTtd---~~kL~~TIrSRC~----~f~f~~Ls~eeI~~~L~~Il~kE--gi~id~eAL~~Ia~---~A~GslRdAlnLL 221 (709)
T PRK08691 154 LATTD---PHKVPVTVLSRCL----QFVLRNMTAQQVADHLAHVLDSE--KIAYEPPALQLLGR---AAAGSMRDALSLL 221 (709)
T ss_pred EEeCC---ccccchHHHHHHh----hhhcCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHH---HhCCCHHHHHHHH
Confidence 56652 3456677889995 79999999999999999999987 46689999999998 6789999999999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHHHHh
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
++++... . ..|+.++|...+...
T Consensus 222 Dqaia~g--~-------g~It~e~V~~lLG~~ 244 (709)
T PRK08691 222 DQAIALG--S-------GKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHhc--C-------CCcCHHHHHHHHccc
Confidence 9887642 2 257777777665543
No 37
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.6e-18 Score=177.95 Aligned_cols=213 Identities=16% Similarity=0.199 Sum_probs=158.2
Q ss_pred CCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-------------
Q psy200 181 EDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD------------- 247 (490)
Q Consensus 181 ~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~------------- 247 (490)
..+|+|... ++++|++..++.|..++.. +.-++.++|+||+|+||||+|+.+++.+.+..
T Consensus 4 a~KyRP~~f----~dliGQe~vv~~L~~a~~~---~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 4 ALKYRPSSF----KDLVGQDVLVRILRNAFTL---NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred hHHhCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 457888777 9999999999888877753 34567899999999999999999999874221
Q ss_pred -------CceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHH
Q psy200 248 -------AFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTIL 318 (490)
Q Consensus 248 -------~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L 318 (490)
...+++++..+ ..+.+++++.+..... ..++..|+||||+|.|....++.|
T Consensus 77 ~~i~~~~~~Dv~eidaas--------------------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS--------------------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEeccc--------------------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHH
Confidence 11233333321 1245555554443321 124567999999999988888888
Q ss_pred HHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q psy200 319 YTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLA 398 (490)
Q Consensus 319 ~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~ 398 (490)
...++.+ ...+++|.+++. .+.+...+++||. .+.|.+++.+++.+++...+..+ ...+++++++.|+
T Consensus 137 LK~LEeP---p~~v~fIlatte---~~Kl~~tI~SRc~----~~~f~~l~~~el~~~L~~ia~~E--gi~i~~eAL~lIa 204 (491)
T PRK14964 137 LKTLEEP---APHVKFILATTE---VKKIPVTIISRCQ----RFDLQKIPTDKLVEHLVDIAKKE--NIEHDEESLKLIA 204 (491)
T ss_pred HHHHhCC---CCCeEEEEEeCC---hHHHHHHHHHhhe----eeecccccHHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 8887743 345666666652 4567788999995 89999999999999999999887 4678999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 399 GKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 399 ~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
+ ...|++|.++++|+.++.... + .|+.++|...+
T Consensus 205 ~---~s~GslR~alslLdqli~y~~--~-------~It~e~V~~ll 238 (491)
T PRK14964 205 E---NSSGSMRNALFLLEQAAIYSN--N-------KISEKSVRDLL 238 (491)
T ss_pred H---HcCCCHHHHHHHHHHHHHhcC--C-------CCCHHHHHHHH
Confidence 8 678999999999999875432 2 57777777654
No 38
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.81 E-value=7.9e-19 Score=188.83 Aligned_cols=222 Identities=18% Similarity=0.272 Sum_probs=158.3
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHH---HHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEG---IRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~---l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
+|.++|+|... ++++|++..+.. |..++ ..+...+++|+|||||||||+|+.+++.+. ..++.++
T Consensus 17 PLaek~RP~tl----dd~vGQe~ii~~~~~L~~~i----~~~~~~slLL~GPpGtGKTTLA~aIA~~~~----~~f~~ln 84 (725)
T PRK13341 17 PLADRLRPRTL----EEFVGQDHILGEGRLLRRAI----KADRVGSLILYGPPGVGKTTLARIIANHTR----AHFSSLN 84 (725)
T ss_pred ChHHhcCCCcH----HHhcCcHHHhhhhHHHHHHH----hcCCCceEEEECCCCCCHHHHHHHHHHHhc----Ccceeeh
Confidence 67778888777 899999998853 44444 446677899999999999999999998864 4456666
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 256 CNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
+... ...+ ..+..+.+...+...++..+|||||+|.+....|+.|...++ ...+++|
T Consensus 85 a~~~-~i~d-----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE-----~g~IiLI 141 (725)
T PRK13341 85 AVLA-GVKD-----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE-----NGTITLI 141 (725)
T ss_pred hhhh-hhHH-----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc-----CceEEEE
Confidence 5421 1000 111112222222222456799999999998888888876654 3568888
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-----CCCCCCCHHHHHHHHHHHHHhhCCHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-----DKFNMFNASALQLLAGKVAAVSGDIRK 410 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-----~~~~~~~~~~i~~i~~~i~~~~Gd~r~ 410 (490)
++++.. ....+.+.+.+|+. .+.|+|++.+++..++.+.+... .....+++++++.|++ ...||+|.
T Consensus 142 ~aTTen-p~~~l~~aL~SR~~----v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~---~s~GD~R~ 213 (725)
T PRK13341 142 GATTEN-PYFEVNKALVSRSR----LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVD---VANGDARS 213 (725)
T ss_pred EecCCC-hHhhhhhHhhcccc----ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHH---hCCCCHHH
Confidence 877642 23456788889975 79999999999999999988721 1246789999999998 56899999
Q ss_pred HHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 411 AIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 411 ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
++++|+.++..+...... ...|+.+++.+++.+
T Consensus 214 lln~Le~a~~~~~~~~~~---~i~It~~~~~e~l~~ 246 (725)
T PRK13341 214 LLNALELAVESTPPDEDG---LIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHHHHHHHhcccCCCC---ceeccHHHHHHHHHH
Confidence 999999988544322200 224888888888766
No 39
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=3.6e-19 Score=179.45 Aligned_cols=233 Identities=16% Similarity=0.212 Sum_probs=157.5
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
+.++|+|... ++++|+++.++.+...+.. +.-++.++|+||+|+||||+|+.+++.+...... ..-.|..+
T Consensus 6 l~~kyrP~~~----~~iiGq~~~~~~l~~~~~~---~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~--~~~pc~~c 76 (363)
T PRK14961 6 LARKWRPQYF----RDIIGQKHIVTAISNGLSL---GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI--TSNPCRKC 76 (363)
T ss_pred HHHHhCCCch----hhccChHHHHHHHHHHHHc---CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCC--CCCCCCCC
Confidence 4457777766 9999999999998888863 3345567999999999999999999998532111 00112222
Q ss_pred CCHHHHHHHHHHHhcC-C-CCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 260 RNAASVYETIVNELKL-K-PGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 260 ~~~~~l~~~i~~~l~~-~-~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
.+...+.....-++.. . ......+.+.+.+..... ..++..|+||||+|.+....++.|...++.. ...+.+|
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~---~~~~~fI 153 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP---PQHIKFI 153 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC---CCCeEEE
Confidence 2222221111101100 0 001234444444333211 1244669999999999877777777776643 3355555
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
.+++. .+.+.+.+.+||. .+.|.|++.+++.+++..++..+ ...+++++++.+++ ...|++|.++++|
T Consensus 154 l~t~~---~~~l~~tI~SRc~----~~~~~~l~~~el~~~L~~~~~~~--g~~i~~~al~~ia~---~s~G~~R~al~~l 221 (363)
T PRK14961 154 LATTD---VEKIPKTILSRCL----QFKLKIISEEKIFNFLKYILIKE--SIDTDEYALKLIAY---HAHGSMRDALNLL 221 (363)
T ss_pred EEcCC---hHhhhHHHHhhce----EEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 55653 4567788999985 89999999999999999999886 35689999999987 6779999999999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+.++.. + ...|+.++|.+++.
T Consensus 222 ~~~~~~----~-----~~~It~~~v~~~l~ 242 (363)
T PRK14961 222 EHAINL----G-----KGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHh----c-----CCCCCHHHHHHHHC
Confidence 988754 2 23688888877665
No 40
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=8.5e-19 Score=182.38 Aligned_cols=234 Identities=13% Similarity=0.194 Sum_probs=156.2
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.+.++|+|... ++++|++..++.|..++.. +...+.++|+||+|+|||++|+.+++.+.+..... .-.|..
T Consensus 5 ~La~KyRP~~f----~diiGq~~~v~~L~~~i~~---~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~--~~pCg~ 75 (546)
T PRK14957 5 ALARKYRPQSF----AEVAGQQHALNSLVHALET---QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVT--AEPCNK 75 (546)
T ss_pred hHHHHHCcCcH----HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC--CCCCcc
Confidence 45567777777 8999999999998888863 23445688999999999999999999886321110 001211
Q ss_pred CCCHHHHHHHHHHHh-cCCC-CCCcHHHHHHHHHHHH--hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEE
Q psy200 259 VRNAASVYETIVNEL-KLKP-GGKSERHQLGAILKYF--DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 259 ~~~~~~l~~~i~~~l-~~~~-~~~s~~~~~~~l~~~l--~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vil 334 (490)
+.+...+-..-..++ .... .....+++.+.+..+. ...++..|+||||+|.|....++.|+..++. ....++|
T Consensus 76 C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe---pp~~v~f 152 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE---PPEYVKF 152 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc---CCCCceE
Confidence 111111100000000 0000 1122333333333221 1224567999999999998888888888874 3345556
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
|++|+. ...+.+.+++||. .+.|.+++.+++..++...+..+ ...+++++++.|++ ...||+|.++++
T Consensus 153 IL~Ttd---~~kil~tI~SRc~----~~~f~~Ls~~eI~~~L~~il~~e--gi~~e~~Al~~Ia~---~s~GdlR~alnl 220 (546)
T PRK14957 153 ILATTD---YHKIPVTILSRCI----QLHLKHISQADIKDQLKIILAKE--NINSDEQSLEYIAY---HAKGSLRDALSL 220 (546)
T ss_pred EEEECC---hhhhhhhHHHhee----eEEeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHH
Confidence 655652 4666777999995 89999999999999999998887 36789999999997 778999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
|+.++.... + .|+.+++..++.
T Consensus 221 Lek~i~~~~--~-------~It~~~V~~~l~ 242 (546)
T PRK14957 221 LDQAISFCG--G-------ELKQAQIKQMLG 242 (546)
T ss_pred HHHHHHhcc--C-------CCCHHHHHHHHc
Confidence 999875432 2 466766666443
No 41
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.80 E-value=3.8e-18 Score=173.31 Aligned_cols=222 Identities=18% Similarity=0.237 Sum_probs=154.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|+++++++|.+++...+.. ..+++++|+||||||||++|+++++++. ..++.++|..+.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~----~~~i~v~~~~l~---- 202 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN----ATFIRVVGSELV---- 202 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC----CCEEEeehHHHh----
Confidence 67999999999999987654332 3577899999999999999999999875 556777664431
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCC--CCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWP--SIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~--~~~~~~ 331 (490)
. .+.|.....+...|..+.. ..++||||||+|.+.... +..+..++... .....+
T Consensus 203 --~--------~~~g~~~~~i~~~f~~a~~--~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 203 --Q--------KFIGEGARLVRELFELARE--KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred --H--------hhccchHHHHHHHHHHHHh--cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 1 2233344444445544333 458899999999995331 23445554322 123457
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCC-H
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGD-I 408 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd-~ 408 (490)
++||++||.. +.+++.+.+ ||. ..|.|++|+.++..+|++.++...... .+..+..+++. +.|- .
T Consensus 271 v~VI~aTn~~---~~ld~allRpgRfd---~~I~v~~P~~~~R~~Il~~~~~~~~~~---~~~~~~~la~~---t~g~sg 338 (389)
T PRK03992 271 VKIIAATNRI---DILDPAILRPGRFD---RIIEVPLPDEEGRLEILKIHTRKMNLA---DDVDLEELAEL---TEGASG 338 (389)
T ss_pred EEEEEecCCh---hhCCHHHcCCccCc---eEEEECCCCHHHHHHHHHHHhccCCCC---CcCCHHHHHHH---cCCCCH
Confidence 8999999964 455666654 666 479999999999999999887664211 12335666662 3332 3
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
..+-.+|..|...|..++ ...|+.+||.+|+..+.....
T Consensus 339 adl~~l~~eA~~~a~~~~-----~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 339 ADLKAICTEAGMFAIRDD-----RTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHHHHHHHHHHHHHcC-----CCCcCHHHHHHHHHHHhcccc
Confidence 344468999999998887 668999999999999876544
No 42
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.80 E-value=3.6e-18 Score=175.87 Aligned_cols=247 Identities=17% Similarity=0.230 Sum_probs=166.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEI-KDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
..+.++|||++|+|||+|++++++++.. ..+..++|++ ..+++..+...+.... ..+ +.+.+.+
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-----~~~-~~~~~~~--- 204 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-----KEI-EQFKNEI--- 204 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-----hHH-HHHHHHh---
Confidence 3467999999999999999999998753 3567888884 4556666666554210 111 2222222
Q ss_pred CCeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 297 HKSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
...-+|+|||+|.+... .++.|+.+++.....+..+++. ..........+.+++.+||.++ ..+.+.+++.+++.+
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIlt-sd~~P~~l~~l~~rL~SR~~~G-l~~~L~~pd~e~r~~ 282 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFS-SDKSPELLNGFDNRLITRFNMG-LSIAIQKLDNKTATA 282 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEE-CCCCHHHHhhccHHHHHHHhCC-ceeccCCcCHHHHHH
Confidence 33559999999999754 4678888887654444444443 2222234455678999999766 369999999999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccc-cC---------------CcccccCHH
Q psy200 375 IISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVK-EN---------------GEVTGIGLK 438 (490)
Q Consensus 375 il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~-~~---------------~~~~~It~~ 438 (490)
+|++++...+....+++++++.|+. ...||+|.++.+|.++...+..... .. .....|+++
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~---~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~~~~~~t~~ 359 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISN---YYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTSKLGILNVK 359 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccccccCCCCHH
Confidence 9999998764333699999999998 8889999999999988766654411 00 012237777
Q ss_pred HHHHHHHHhccCccccccccccCCCChHhHHHH---HHHHHHhcCCCCCCcccC
Q psy200 439 EVLGVISSVYCTSQSLHCSKDEDSFPLQQKLAL---ASLLLLKSRPNVKDVTLG 489 (490)
Q Consensus 439 ~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL---~al~~~~~~~~~~~~~~g 489 (490)
.|.+++.+.++-.. +.+.+-...+..++ .||+++.+-.+.+...||
T Consensus 360 ~I~~~Va~~~~i~~-----~dl~s~~R~~~i~~~RqiamyL~r~~t~~sl~~IG 408 (450)
T PRK14087 360 KIKEVVSEKYGISV-----NAIDGKARSKSIVTARHIAMYLTKEILNHTLAQIG 408 (450)
T ss_pred HHHHHHHHHcCCCH-----HHHhCCCCCccccHHHHHHHHHHHHHcCCCHHHHH
Confidence 77777777776444 33444444444343 467777666666665555
No 43
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.79 E-value=8.8e-18 Score=167.22 Aligned_cols=218 Identities=20% Similarity=0.250 Sum_probs=155.3
Q ss_pred ccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEe
Q psy200 177 LLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYIN 255 (490)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~ 255 (490)
..+|.++|+|... ++++|+++.++.|..++.. +..++++|+|++|+|||++++.+++++.... ...++.++
T Consensus 4 ~~~w~~kyrP~~~----~~~~g~~~~~~~l~~~i~~----~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 4 EEIWVEKYRPRTL----DEIVGQEEIVERLKSYVKE----KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred cCccchhhCCCcH----HHhcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3479999999888 8999999999999888863 4455789999999999999999999874222 22445555
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCc
Q psy200 256 CNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD----TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSK 331 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~----~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~ 331 (490)
+....... . +.+.+..... ......+|+|||+|.+....+..|..+++... ...
T Consensus 76 ~~~~~~~~-~-------------------~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-~~~- 133 (319)
T PRK00440 76 ASDERGID-V-------------------IRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-QNT- 133 (319)
T ss_pred cccccchH-H-------------------HHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-CCC-
Confidence 44322111 1 1111111111 11235699999999998777777887776432 233
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
.+|.+++. ...+.+.+++|+. .+.|.+++.+++..++..++... ...+++++++.+++ ...||+|.+
T Consensus 134 -~lIl~~~~---~~~l~~~l~sr~~----~~~~~~l~~~ei~~~l~~~~~~~--~~~i~~~al~~l~~---~~~gd~r~~ 200 (319)
T PRK00440 134 -RFILSCNY---SSKIIDPIQSRCA----VFRFSPLKKEAVAERLRYIAENE--GIEITDDALEAIYY---VSEGDMRKA 200 (319)
T ss_pred -eEEEEeCC---ccccchhHHHHhh----eeeeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHH
Confidence 33434442 2445667888886 79999999999999999999876 35689999999987 678999999
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHh
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
++.++.+... + ..|+.++|.+++...
T Consensus 201 ~~~l~~~~~~----~------~~it~~~v~~~~~~~ 226 (319)
T PRK00440 201 INALQAAAAT----G------KEVTEEAVYKITGTA 226 (319)
T ss_pred HHHHHHHHHc----C------CCCCHHHHHHHhCCC
Confidence 9999876542 2 268888887776543
No 44
>KOG0733|consensus
Probab=99.79 E-value=4.6e-18 Score=171.22 Aligned_cols=202 Identities=16% Similarity=0.257 Sum_probs=147.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
.++-|.++.+.+|.+.+..... -.+++++||+||||||||+||++++.+++ ++|+.+++..+-+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~----vPf~~isApeivS---- 261 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG----VPFLSISAPEIVS---- 261 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC----CceEeecchhhhc----
Confidence 7899999999999998765211 23788999999999999999999999986 8889998776533
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH--------HHHHHh---HhCCC---CCCCc
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ--------TILYTI---FEWPS---IPGSK 331 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~--------~~L~~l---~~~~~---~~~~~ 331 (490)
...|++++.+++.|.++.. ..|||+||||||.+...++ ....+| |+-.. ..+..
T Consensus 262 ----------GvSGESEkkiRelF~~A~~--~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 262 ----------GVSGESEKKIRELFDQAKS--NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ----------ccCcccHHHHHHHHHHHhc--cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 5567899999999998876 5699999999999987752 122222 33222 13578
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
|+|||+||+.| .+++.|+ |.|.....|.+.-++..+..+||+..|........|+ ++.|++ .+.|-+..-
T Consensus 330 VlVIgATnRPD---slDpaLR-RaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d---~~qlA~---lTPGfVGAD 399 (802)
T KOG0733|consen 330 VLVIGATNRPD---SLDPALR-RAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD---FKQLAK---LTPGFVGAD 399 (802)
T ss_pred eEEEecCCCCc---ccCHHHh-ccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC---HHHHHh---cCCCccchh
Confidence 99999999754 4455554 3343346899999999999999999998764333444 566776 344544333
Q ss_pred H-HHHHHHHHHHHhc
Q psy200 412 I-DITNHLIDLTYDN 425 (490)
Q Consensus 412 i-~ll~~a~~~a~~~ 425 (490)
+ .+|..|...|..+
T Consensus 400 L~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 400 LMALCREAAFVAIKR 414 (802)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3 3666666666543
No 45
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=4.5e-18 Score=176.05 Aligned_cols=231 Identities=16% Similarity=0.198 Sum_probs=158.1
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.|.++|+|... ++++|++..++.|..++.. +.-++.++||||+|+|||++|+.+++.+....... .-.|..
T Consensus 3 ~l~~KyRP~~f----deiiGqe~v~~~L~~~I~~---grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~--~~pC~~ 73 (535)
T PRK08451 3 ALALKYRPKHF----DELIGQESVSKTLSLALDN---NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPS--STPCDT 73 (535)
T ss_pred cHHHHHCCCCH----HHccCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCC--CCCCcc
Confidence 45678888888 9999999999999988864 33455668999999999999999999985322110 001221
Q ss_pred CCCHHHHHHHHHH---HhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 259 VRNAASVYETIVN---ELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 259 ~~~~~~l~~~i~~---~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
+.+...+.....- .++. ......+.+++.+..... ..++..|+||||+|.|....++.|+..++.+ ...++
T Consensus 74 C~~C~~~~~~~h~dv~elda-as~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp---p~~t~ 149 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDA-ASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP---PSYVK 149 (535)
T ss_pred cHHHHHHhhcCCCeEEEecc-ccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc---CCceE
Confidence 1111111100000 0000 001234555555543211 1245679999999999988888898888754 23455
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
||.+++. ...+.+.+++||. .+.|.+++.+++...+.+.+..++ ..+++++++.|++ ...|++|.+++
T Consensus 150 FIL~ttd---~~kL~~tI~SRc~----~~~F~~Ls~~ei~~~L~~Il~~EG--i~i~~~Al~~Ia~---~s~GdlR~aln 217 (535)
T PRK08451 150 FILATTD---PLKLPATILSRTQ----HFRFKQIPQNSIISHLKTILEKEG--VSYEPEALEILAR---SGNGSLRDTLT 217 (535)
T ss_pred EEEEECC---hhhCchHHHhhce----eEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH---HcCCcHHHHHH
Confidence 5555542 3677788999985 899999999999999999998874 5689999999998 77899999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGV 443 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a 443 (490)
+|++++..+ .+ .|+.++|...
T Consensus 218 lLdqai~~~--~~-------~It~~~V~~~ 238 (535)
T PRK08451 218 LLDQAIIYC--KN-------AITESKVADM 238 (535)
T ss_pred HHHHHHHhc--CC-------CCCHHHHHHH
Confidence 999988665 22 4555555544
No 46
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=1.6e-18 Score=182.79 Aligned_cols=253 Identities=16% Similarity=0.163 Sum_probs=159.1
Q ss_pred ccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccC-CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 177 LLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNE-TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~-~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
..+|.++|+|... ++|+|+++++++|..||....... ....++|+||+|+||||+++.++..+...-.-..-.++
T Consensus 71 ~~pW~eKyrP~~l----del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 71 NEPWVEKYKPETQ----HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred cCchHHHhCCCCH----HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 3489999999999 999999999999999998754333 34569999999999999999999987511000011122
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh--------cCCCeEEEEEecCccccccCHHHHHHhHhCCCC
Q psy200 256 CNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD--------TKHKSILLILDEIDALESRKQTILYTIFEWPSI 327 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~--------~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~ 327 (490)
|....+.......+...+... ....+.+.+++..+-. ..++..|||||||+++.......+..++.|...
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~--~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~ 224 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNF--QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV 224 (637)
T ss_pred hcccccccccchhhhhccccc--cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh
Confidence 222222222222222222211 1233444444443321 124678999999999987776777777764443
Q ss_pred CCCcEEEEEecCCCC----------hh-Hh-hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCC----CC-CCC
Q psy200 328 PGSKLVLVGVANALD----------LT-DR-MLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDK----FN-MFN 390 (490)
Q Consensus 328 ~~~~vilI~~tn~~~----------~~-~~-l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~----~~-~~~ 390 (490)
...++.+|++++... +. .+ +.+.+.++... ..|.|+|++..++.+.|...+..+.. .. ..+
T Consensus 225 e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv--~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~ 302 (637)
T TIGR00602 225 SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV--SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPK 302 (637)
T ss_pred cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce--eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCC
Confidence 445565665554210 11 11 22566653332 47999999999999999988876521 11 225
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH----HHHhccccCCcccccCHHHHHHHHH
Q psy200 391 ASALQLLAGKVAAVSGDIRKAIDITNHLID----LTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 391 ~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~----~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+++++.|+. ...||+|.||+.|+.++. ++...+ ...++..++..+..
T Consensus 303 ~~~l~~I~~---~s~GDiRsAIn~LQf~~~~~g~~a~~~~-----~~~vs~~hv~~a~~ 353 (637)
T TIGR00602 303 KTSVELLCQ---GCSGDIRSAINSLQFSSSKSGSLPIKKR-----MSTKSDAHASKSKI 353 (637)
T ss_pred HHHHHHHHH---hCCChHHHHHHHHHHHHhcCCccccccc-----cccccHHHhhhccc
Confidence 678888876 789999999999998743 222223 34566666555543
No 47
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.79 E-value=1.1e-17 Score=169.05 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=153.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.+.++++|.+.+...+.. ..+++++|+||||||||++++++++++. ..++.+.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~----~~fi~i~~s~------ 214 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT----ATFIRVVGSE------ 214 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC----CCEEEEehHH------
Confidence 67999999999999988644321 3578999999999999999999999864 4566665432
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCCC--CCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWPS--IPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~~--~~~~~ 331 (490)
+.. .+.+.+...+.+.|..+.. ..|+||||||+|.+.... +..+..++.+.. ....+
T Consensus 215 l~~--------k~~ge~~~~lr~lf~~A~~--~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 215 FVQ--------KYLGEGPRMVRDVFRLARE--NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHH--------HhcchhHHHHHHHHHHHHh--cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 211 2233444455555554433 568999999999986431 234445543321 23457
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DI 408 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~ 408 (490)
+++|++||+. +.+++.+.+ ||. ..|.|++++.++...|++..+...+.. .+..+..++. ...| ..
T Consensus 285 v~VI~aTN~~---d~LDpAllR~GRfd---~~I~~~~P~~~~R~~Il~~~~~~~~l~---~dvd~~~la~---~t~g~sg 352 (398)
T PTZ00454 285 VKVIMATNRA---DTLDPALLRPGRLD---RKIEFPLPDRRQKRLIFQTITSKMNLS---EEVDLEDFVS---RPEKISA 352 (398)
T ss_pred EEEEEecCCc---hhCCHHHcCCCccc---EEEEeCCcCHHHHHHHHHHHHhcCCCC---cccCHHHHHH---HcCCCCH
Confidence 8899999954 556666654 666 589999999999999999887665221 2233566665 2333 34
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
..+.++|..|...|.+++ ...|+.+||.+|+..+...
T Consensus 353 aDI~~l~~eA~~~A~r~~-----~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 353 ADIAAICQEAGMQAVRKN-----RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHHHHHHHcC-----CCccCHHHHHHHHHHHHhc
Confidence 555679999999999888 6789999999999997643
No 48
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.79 E-value=1.1e-17 Score=172.54 Aligned_cols=223 Identities=16% Similarity=0.156 Sum_probs=156.5
Q ss_pred CCCCChHHHHHHHHHHHHhhh------ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV------NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~------~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~ 267 (490)
+++.|.+..++.+.+...... .-..++++||+||||||||++|++++++++ ..++.+++...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~----~~~~~l~~~~l-------- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ----LPLLRLDVGKL-------- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CCEEEEEhHHh--------
Confidence 678898877776665432211 113568999999999999999999999975 67788876432
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC---------HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK---------QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~---------~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
...+.|.+...+.+.|..+.. ..|+||||||||.++... ...+..++.|......+++||++|
T Consensus 296 ------~~~~vGese~~l~~~f~~A~~--~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 296 ------FGGIVGESESRMRQMIRIAEA--LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ------cccccChHHHHHHHHHHHHHh--cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 224556667777777665433 468999999999886531 123434444444456789999999
Q ss_pred CCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy200 339 NALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITN 416 (490)
Q Consensus 339 n~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~ 416 (490)
|.. +.+++.+.+ ||. ..+.++.++.++..+|++.++.+.. .....+..++.+++...+++| ..+-++|.
T Consensus 368 N~~---~~Ld~allR~GRFD---~~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfSG--AdI~~lv~ 438 (489)
T CHL00195 368 NNI---DLLPLEILRKGRFD---EIFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFSG--AEIEQSII 438 (489)
T ss_pred CCh---hhCCHHHhCCCcCC---eEEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCCH--HHHHHHHH
Confidence 954 455666654 776 5899999999999999999988752 122345557778774433333 33445778
Q ss_pred HHHHHHHhccccCCcccccCHHHHHHHHHHhccCc
Q psy200 417 HLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 417 ~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~ 451 (490)
.|...|..++ ..++.+|+..|+..+.+..
T Consensus 439 eA~~~A~~~~------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 439 EAMYIAFYEK------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHHHcC------CCcCHHHHHHHHHhcCCCc
Confidence 8888777666 4699999999999988753
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.78 E-value=8.7e-18 Score=168.59 Aligned_cols=236 Identities=15% Similarity=0.200 Sum_probs=157.0
Q ss_pred cCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEec
Q psy200 178 LFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINC 256 (490)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~ 256 (490)
.+|.++|+|... ++|+|++..++.|..++.. +..++++|+||+|+|||++|+++++++.... ...+++++|
T Consensus 3 ~~w~~ky~P~~~----~~~~g~~~~~~~L~~~~~~----~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 3 PLWTEKYRPALL----EDILGQDEVVERLSRAVDS----PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred CchHHhhCCCcH----HHhcCCHHHHHHHHHHHhC----CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 379999999988 8999999999998888863 4445799999999999999999999885332 235677777
Q ss_pred cCCCCH-HHHHHH---HHHHhcCC-CCCC-cHHHHHHHHHHHHhc---CCCeEEEEEecCccccccCHHHHHHhHhCCCC
Q psy200 257 NSVRNA-ASVYET---IVNELKLK-PGGK-SERHQLGAILKYFDT---KHKSILLILDEIDALESRKQTILYTIFEWPSI 327 (490)
Q Consensus 257 ~~~~~~-~~l~~~---i~~~l~~~-~~~~-s~~~~~~~l~~~l~~---~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~ 327 (490)
...... ...+.. +...+... ..+. ....+.+.+...... .+...+|||||+|.+....+..|..+++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~- 153 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS- 153 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-
Confidence 553210 000000 00000000 0001 112222222222111 1334599999999998777777877776432
Q ss_pred CCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCC
Q psy200 328 PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGD 407 (490)
Q Consensus 328 ~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd 407 (490)
....++ .+++. ...+.+.+++|+. .+.|.|++.+++..++...+...+ ..+++++++.+++ ...||
T Consensus 154 ~~~~~I--l~~~~---~~~~~~~L~sr~~----~v~~~~~~~~~~~~~l~~~~~~~~--~~~~~~al~~l~~---~~~gd 219 (337)
T PRK12402 154 RTCRFI--IATRQ---PSKLIPPIRSRCL----PLFFRAPTDDELVDVLESIAEAEG--VDYDDDGLELIAY---YAGGD 219 (337)
T ss_pred CCCeEE--EEeCC---hhhCchhhcCCce----EEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH---HcCCC
Confidence 223333 33432 2345677888874 799999999999999999988763 4589999999998 66899
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 408 IRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 408 ~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
+|.+++.++.+. ... ..|+.+++.+++..
T Consensus 220 lr~l~~~l~~~~----~~~------~~It~~~v~~~~~~ 248 (337)
T PRK12402 220 LRKAILTLQTAA----LAA------GEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHHHHHH----HcC------CCCCHHHHHHHhCC
Confidence 999999887654 112 36888888877654
No 50
>CHL00176 ftsH cell division protein; Validated
Probab=99.78 E-value=8e-18 Score=178.96 Aligned_cols=219 Identities=19% Similarity=0.226 Sum_probs=156.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++..+++.+.+..... ...+++++|+||||||||++|++++.+++ .++++++|..+.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~----~p~i~is~s~f~----- 253 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE----VPFFSISGSEFV----- 253 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeeeccHHHHH-----
Confidence 7899999888888776643211 12467899999999999999999999864 677888765531
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc-----------CHHHHHHhHhCC--CCCCCcE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR-----------KQTILYTIFEWP--SIPGSKL 332 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~-----------~~~~L~~l~~~~--~~~~~~v 332 (490)
. .+.+.....+...|..+.. ..|+||||||+|.+... .+..+..++... ......+
T Consensus 254 -~--------~~~g~~~~~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 254 -E--------MFVGVGAARVRDLFKKAKE--NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred -H--------HhhhhhHHHHHHHHHHHhc--CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1 1112334455666665543 56899999999999532 123455554322 2245679
Q ss_pred EEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHH
Q psy200 333 VLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIR 409 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r 409 (490)
+||++||.. +.+++.+.+ ||+ ..+.|.+|+.++..+||+.++... ....+..+..+++ .+.| +.+
T Consensus 323 iVIaaTN~~---~~LD~ALlRpGRFd---~~I~v~lPd~~~R~~IL~~~l~~~---~~~~d~~l~~lA~---~t~G~sga 390 (638)
T CHL00176 323 IVIAATNRV---DILDAALLRPGRFD---RQITVSLPDREGRLDILKVHARNK---KLSPDVSLELIAR---RTPGFSGA 390 (638)
T ss_pred eEEEecCch---HhhhhhhhccccCc---eEEEECCCCHHHHHHHHHHHHhhc---ccchhHHHHHHHh---cCCCCCHH
Confidence 999999964 445556654 565 489999999999999999988764 2344566777776 5566 566
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
.+-+++..|+..+.+.+ ...|+.++|..|+..+..
T Consensus 391 DL~~lvneAal~a~r~~-----~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 391 DLANLLNEAAILTARRK-----KATITMKEIDTAIDRVIA 425 (638)
T ss_pred HHHHHHHHHHHHHHHhC-----CCCcCHHHHHHHHHHHHh
Confidence 77788999988887777 568999999999998753
No 51
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=1.2e-17 Score=176.22 Aligned_cols=232 Identities=17% Similarity=0.246 Sum_probs=158.5
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
++.+|+|... ++++|++..++.|..++.. +..++.+|++||+|+|||++|+.+++.+.+..... ...|..+
T Consensus 6 l~~k~rP~~f----~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~--~~pC~~C 76 (559)
T PRK05563 6 LYRKWRPQTF----EDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD--GEPCNEC 76 (559)
T ss_pred HHHHhCCCcH----HhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CCCCCcc
Confidence 4567777777 9999999999999888864 34456688999999999999999999875322110 0123332
Q ss_pred CCHHHHHHHHHHHh-cC-CCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 260 RNAASVYETIVNEL-KL-KPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 260 ~~~~~l~~~i~~~l-~~-~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
.+...+.....-++ .. .....+.+++++.+..... ..++..|+||||+|.|.....+.|...++. ....++||
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe---pp~~~ifI 153 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE---PPAHVIFI 153 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC---CCCCeEEE
Confidence 22111111000000 00 0111334555554444321 135577999999999987777777776653 34567777
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
.+|+. .+.+.+.+++||. .+.|.+++.+++..++...+... ...+++++++.|++ ...|++|.++++|
T Consensus 154 latt~---~~ki~~tI~SRc~----~~~f~~~~~~ei~~~L~~i~~~e--gi~i~~~al~~ia~---~s~G~~R~al~~L 221 (559)
T PRK05563 154 LATTE---PHKIPATILSRCQ----RFDFKRISVEDIVERLKYILDKE--GIEYEDEALRLIAR---AAEGGMRDALSIL 221 (559)
T ss_pred EEeCC---hhhCcHHHHhHhe----EEecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 66652 4677888999996 79999999999999999999876 35689999999998 6789999999999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++++... .+ .|+.++|..++
T Consensus 222 dq~~~~~--~~-------~It~~~V~~vl 241 (559)
T PRK05563 222 DQAISFG--DG-------KVTYEDALEVT 241 (559)
T ss_pred HHHHHhc--cC-------CCCHHHHHHHh
Confidence 9887653 22 46666665543
No 52
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.78 E-value=1.1e-17 Score=170.20 Aligned_cols=220 Identities=13% Similarity=0.154 Sum_probs=151.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
.++.|.++++++|.+++...+.. ..+.+++|+||||||||++|+++++++. ..++.+.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~----~~fi~V~~seL~---- 254 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS----ATFLRVVGSELI---- 254 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC----CCEEEEecchhh----
Confidence 67899999999999988644322 3567899999999999999999999875 455666544321
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCC--CCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWP--SIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~--~~~~~~ 331 (490)
. .+.|.....+...|..+.. +.++||||||||.+.... +..+..++... ......
T Consensus 255 --~--------k~~Ge~~~~vr~lF~~A~~--~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 255 --Q--------KYLGDGPKLVRELFRVAEE--NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred --h--------hhcchHHHHHHHHHHHHHh--CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 2233444445555554433 568999999999986431 23344444321 123457
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIR 409 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r 409 (490)
+.||++||.. +.+++.+.+ ||. ..|.|++|+.++..+||..++...... .+..++.++....+.+ ..
T Consensus 323 V~VI~ATNr~---d~LDpaLlRpGRfd---~~I~~~~Pd~~~R~~Il~~~~~k~~l~---~dvdl~~la~~t~g~s--gA 391 (438)
T PTZ00361 323 VKVIMATNRI---ESLDPALIRPGRID---RKIEFPNPDEKTKRRIFEIHTSKMTLA---EDVDLEEFIMAKDELS--GA 391 (438)
T ss_pred eEEEEecCCh---HHhhHHhccCCeeE---EEEEeCCCCHHHHHHHHHHHHhcCCCC---cCcCHHHHHHhcCCCC--HH
Confidence 8899999954 455666653 666 589999999999999999887665221 2223455554222233 33
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
.+-.+|..|...|.+++ ...|+.+||..|+..+..
T Consensus 392 dI~~i~~eA~~~Alr~~-----r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 392 DIKAICTEAGLLALRER-----RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred HHHHHHHHHHHHHHHhc-----CCccCHHHHHHHHHHHHh
Confidence 34468999999999988 678999999999999754
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=1.4e-17 Score=173.05 Aligned_cols=228 Identities=19% Similarity=0.241 Sum_probs=153.0
Q ss_pred CcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC
Q psy200 182 DKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN 261 (490)
Q Consensus 182 ~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~ 261 (490)
++|+|... ++++|+++.++.|..++.. +..++.++|+||+|+||||+|+++++.+....... ..|..+.+
T Consensus 6 ~KyRP~~~----~dvvGq~~v~~~L~~~i~~---~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~---~~cg~C~s 75 (504)
T PRK14963 6 QRARPITF----DEVVGQEHVKEVLLAALRQ---GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP---KPCGECES 75 (504)
T ss_pred HhhCCCCH----HHhcChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCC---CCCCcChh
Confidence 57777777 8999999999999888874 23445569999999999999999999986322111 12222221
Q ss_pred HHHHHHHH---HHHhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEE
Q psy200 262 AASVYETI---VNELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVG 336 (490)
Q Consensus 262 ~~~l~~~i---~~~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~ 336 (490)
...+.... +..++.. ...+.+.+++....... ..+++.||||||+|.+....++.|...++. ....+++|.
T Consensus 76 c~~i~~~~h~dv~el~~~-~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe---p~~~t~~Il 151 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAA-SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE---PPEHVIFIL 151 (504)
T ss_pred hHHHhcCCCCceEEeccc-ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh---CCCCEEEEE
Confidence 11111000 0001111 11234444443222111 124566999999999977667777666653 234566666
Q ss_pred ecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy200 337 VANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITN 416 (490)
Q Consensus 337 ~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~ 416 (490)
+++. ...+.+.+.+||. .+.|.+++.+++..+|.+.+..++ ..+++++++.|++ ...||+|.++++|+
T Consensus 152 ~t~~---~~kl~~~I~SRc~----~~~f~~ls~~el~~~L~~i~~~eg--i~i~~~Al~~ia~---~s~GdlR~aln~Le 219 (504)
T PRK14963 152 ATTE---PEKMPPTILSRTQ----HFRFRRLTEEEIAGKLRRLLEAEG--REAEPEALQLVAR---LADGAMRDAESLLE 219 (504)
T ss_pred EcCC---hhhCChHHhcceE----EEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH---HcCCCHHHHHHHHH
Confidence 6653 3566778889985 899999999999999999998873 5679999999998 77899999999999
Q ss_pred HHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 417 HLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 417 ~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
.++.. + ..|+.++|.+++.
T Consensus 220 kl~~~----~------~~It~~~V~~~l~ 238 (504)
T PRK14963 220 RLLAL----G------TPVTRKQVEEALG 238 (504)
T ss_pred HHHhc----C------CCCCHHHHHHHHC
Confidence 88542 2 2577777666543
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=1.7e-17 Score=160.10 Aligned_cols=208 Identities=17% Similarity=0.142 Sum_probs=138.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-----------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhc---CCceEEEEeccCC
Q psy200 194 CELPGREVQLEGIRQFLLGHVN-----------NETSGSMYISGPPGTGKSASLNLLVSRAEIK---DAFKTIYINCNSV 259 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~-----------~~~~~~ill~GppGtGKTtla~~l~~~l~~~---~~~~~~~v~~~~~ 259 (490)
++++|.++.++.|.+++..... .....+++|+||||||||++|+.+++.+... ....+++++|...
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 5699999998888766543211 1244689999999999999999999886421 1224556655432
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----HHHHHHhHhCCCCCCCcEEE
Q psy200 260 RNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----QTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 260 ~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----~~~L~~l~~~~~~~~~~vil 334 (490)
. ..+.+.......+.|..+. ..||||||+|.|.... .+.+..++.........+++
T Consensus 86 ------~--------~~~~g~~~~~~~~~~~~a~-----~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 86 ------V--------GEYIGHTAQKTREVIKKAL-----GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred ------h--------hhhccchHHHHHHHHHhcc-----CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 1 1223334444444444332 2499999999987421 23334443332223455666
Q ss_pred EEecCCC--ChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH-------hh
Q psy200 335 VGVANAL--DLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAA-------VS 405 (490)
Q Consensus 335 I~~tn~~--~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~-------~~ 405 (490)
|+++... +....+.+.+++||. ..+.|++|+.+++.+|+++.+... ...+++++++.+++.+.. ..
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~---~~i~f~~~~~~el~~Il~~~~~~~--~~~l~~~a~~~l~~~~~~~~~~~~~~~ 221 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFP---ISIDFPDYTVEELMEIAERMVKER--EYKLTEEAKWKLREHLYKVDQLSSREF 221 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccc---eEEEECCCCHHHHHHHHHHHHHHc--CCccCHHHHHHHHHHHHHHHhccCCCC
Confidence 6655432 233445689999996 379999999999999999998765 456899999998765433 35
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q psy200 406 GDIRKAIDITNHLIDLTYDN 425 (490)
Q Consensus 406 Gd~r~ai~ll~~a~~~a~~~ 425 (490)
||.|.+.++++.|+.....+
T Consensus 222 gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 222 SNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 89999999999988665443
No 55
>PRK06893 DNA replication initiation factor; Validated
Probab=99.78 E-value=1.8e-17 Score=156.53 Aligned_cols=190 Identities=16% Similarity=0.216 Sum_probs=131.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
...+.++|+||+|+|||+|++++++++... +..+.|+++... ..+ ... .+.. +
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~---~~~----------------~~~---~~~~-~--- 89 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKS---QYF----------------SPA---VLEN-L--- 89 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHh---hhh----------------hHH---HHhh-c---
Confidence 344678999999999999999999987532 335566654211 000 001 1111 1
Q ss_pred CCeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 297 HKSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
.+..+|+|||+|.+... .+..|+.+++.....+..+++++...........++.+++|+..+ ..+.+.+++.+++++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g-~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG-EIYQLNDLTDEQKII 168 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC-CeeeCCCCCHHHHHH
Confidence 23459999999998644 345677777654434445555555443333333457889988654 368999999999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 375 IISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 375 il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
++++.+... ...+++++++.|++ ...||+|.+++++.+....+..++ ..||.+.+.+++.
T Consensus 169 iL~~~a~~~--~l~l~~~v~~~L~~---~~~~d~r~l~~~l~~l~~~~~~~~------~~it~~~v~~~L~ 228 (229)
T PRK06893 169 VLQRNAYQR--GIELSDEVANFLLK---RLDRDMHTLFDALDLLDKASLQAQ------RKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHhcC------CCCCHHHHHHHhc
Confidence 999988765 46789999999998 788999999999988654334333 4799999988763
No 56
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.78 E-value=1.6e-16 Score=154.27 Aligned_cols=217 Identities=19% Similarity=0.292 Sum_probs=149.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH---h
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYF---D 294 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l---~ 294 (490)
..+.++|+|++|+||||+++.+++.+.. ..+.+.++ +....+..+++..|+..++....+.........+...+ .
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERVVAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCeEEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999988752 12222232 12223677888999998887655444444444433322 1
Q ss_pred cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhh----hHHhhhccCCCCeeEEeCCCCHH
Q psy200 295 TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRM----LPRLQANVTLQPTLMNFAPYSRE 370 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l----~~~l~~R~~~~~~~i~~~pls~~ 370 (490)
..+++.+|+|||+|.+.....+.|..+.+........+.++.+.. .++.+.+ ...+.+|+. ..+.+++++.+
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~-~~~~~~l~~~~~~~l~~r~~---~~~~l~~l~~~ 195 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ-PEFRETLQSPQLQQLRQRII---ASCHLGPLDRE 195 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC-HHHHHHHcCchhHHHHhhee---eeeeCCCCCHH
Confidence 236678999999999976656666655443322222232232222 1233332 235667765 47999999999
Q ss_pred HHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 371 QILEIISQKLKQTDK--FNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 371 e~~~il~~~l~~~~~--~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
|+.+++.+++...+. ...+++++++.|++ .+.|+++.+..++..++..|..++ ...|+.++|..++.++.
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~---~s~G~p~~i~~l~~~~~~~a~~~~-----~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHR---FSRGIPRLINILCDRLLLSAFLEE-----KREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHH---HcCCcccHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHhh
Confidence 999999999876532 24589999999997 667788887779999999988888 67899999999998764
No 57
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=5.1e-18 Score=177.96 Aligned_cols=232 Identities=16% Similarity=0.233 Sum_probs=157.6
Q ss_pred CCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC
Q psy200 181 EDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR 260 (490)
Q Consensus 181 ~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~ 260 (490)
..+|+|... ++++|++..++.|..++.. +..++.++|+||+|+||||+|+.+++.+...... ..-.|..+.
T Consensus 7 ~~k~rP~~f----~divGq~~v~~~L~~~i~~---~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~--~~~pcg~C~ 77 (527)
T PRK14969 7 ARKWRPKSF----SELVGQEHVVRALTNALEQ---QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGV--TATPCGVCS 77 (527)
T ss_pred HHHhCCCcH----HHhcCcHHHHHHHHHHHHc---CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC--CCCCCCCCH
Confidence 346666666 8999999999988888863 2344567899999999999999999998632211 011233221
Q ss_pred CHHHHHHHHHHHh-cCC-CCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEE
Q psy200 261 NAASVYETIVNEL-KLK-PGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVG 336 (490)
Q Consensus 261 ~~~~l~~~i~~~l-~~~-~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~ 336 (490)
....+-..-+-++ ... ......+.+++.+..+... .++..|+||||+|.|....++.|...++. ....++||+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe---pp~~~~fIL 154 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE---PPEHVKFIL 154 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC---CCCCEEEEE
Confidence 1111110000000 000 1123455555555443221 25567999999999988778888877764 334566666
Q ss_pred ecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy200 337 VANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITN 416 (490)
Q Consensus 337 ~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~ 416 (490)
+|+. ...+...+++||. .+.|.+++.+++.+.+.+.+..++ ..+++++++.|++ ...|++|.++++++
T Consensus 155 ~t~d---~~kil~tI~SRc~----~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~---~s~Gslr~al~lld 222 (527)
T PRK14969 155 ATTD---PQKIPVTVLSRCL----QFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLAR---AAAGSMRDALSLLD 222 (527)
T ss_pred EeCC---hhhCchhHHHHHH----HHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH---HcCCCHHHHHHHHH
Confidence 6653 3456667899995 799999999999999999998763 5689999999997 67899999999999
Q ss_pred HHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 417 HLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 417 ~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+++.. .. ..|+.++|...+.
T Consensus 223 qai~~--~~-------~~I~~~~v~~~~~ 242 (527)
T PRK14969 223 QAIAY--GG-------GTVNESEVRAMLG 242 (527)
T ss_pred HHHHh--cC-------CCcCHHHHHHHHC
Confidence 98754 22 3577777776654
No 58
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=2e-17 Score=180.99 Aligned_cols=235 Identities=19% Similarity=0.190 Sum_probs=165.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
++++||+++++.+.+.|.. ....+++|+||||||||++++.+++.+... .+..++.+++.....
T Consensus 182 ~~~igr~~ei~~~~~~L~~----~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a------ 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCR----RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA------ 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh------
Confidence 7999999999998888854 456789999999999999999999988421 134566665433211
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----HHHHHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----QTILYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----~~~L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
+..+.|.....+.+.+.++.. ..++||||||+|.+...+ .....+++. .......+.+||+||..+
T Consensus 252 ------~~~~~g~~e~~l~~i~~~~~~--~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~-~~l~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 252 ------GTKYRGDFEERLKAVVSEIEK--EPNAILFIDEIHTIVGAGATSGGSMDASNLLK-PALSSGKLRCIGSTTYEE 322 (731)
T ss_pred ------hccccchHHHHHHHHHHHHhc--cCCeEEEEecHHHHhccCCCCCccHHHHHHHH-HHHhCCCeEEEEecCHHH
Confidence 112333444555555554433 347899999999997532 111122221 223456899999999655
Q ss_pred hhH--hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhCC---HHHHHHHH
Q psy200 343 LTD--RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSGD---IRKAIDIT 415 (490)
Q Consensus 343 ~~~--~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~Gd---~r~ai~ll 415 (490)
+.. ..++.+.+||. .+.+.+++.+++.+||+.....+ .....+++++++.+++....+-++ +..+|+++
T Consensus 323 ~~~~~~~d~al~rRf~----~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ll 398 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQ----KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVI 398 (731)
T ss_pred HHHHhhhhHHHHHhCc----eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHH
Confidence 433 24688999996 79999999999999999766543 134678999999999877777666 88899999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+.|.......... .....|+.++|..++..+.+-+.
T Consensus 399 d~a~a~~~~~~~~-~~~~~v~~~~i~~~i~~~tgiP~ 434 (731)
T TIGR02639 399 DEAGASFRLRPKA-KKKANVSVKDIENVVAKMAHIPV 434 (731)
T ss_pred HHhhhhhhcCccc-ccccccCHHHHHHHHHHHhCCCh
Confidence 9988655433210 01346999999999999876654
No 59
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.3e-17 Score=171.75 Aligned_cols=233 Identities=16% Similarity=0.214 Sum_probs=158.8
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.|.++|+|... ++++|++..++.|..++.. +..++.++|+||+|+|||++|+.+++.+.+...... -.|..
T Consensus 5 ~~~~KyRP~~F----~dIIGQe~iv~~L~~aI~~---~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~--~~Cg~ 75 (605)
T PRK05896 5 TFYRKYRPHNF----KQIIGQELIKKILVNAILN---NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG--DCCNS 75 (605)
T ss_pred hHHHHhCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCCcc
Confidence 57788888888 9999999999998888853 345577999999999999999999999853221110 12322
Q ss_pred CCCHHHHHHHHHHHh-cCC-CCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEE
Q psy200 259 VRNAASVYETIVNEL-KLK-PGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 259 ~~~~~~l~~~i~~~l-~~~-~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vil 334 (490)
+.....+.....-++ ... ....+.+++++.+...... .++..|+||||+|.|....++.|...++. ....+++
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE---Pp~~tvf 152 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE---PPKHVVF 152 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh---CCCcEEE
Confidence 221111111000000 000 0112344555444332211 13455899999999987778888888774 3345666
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
|.+|+. ...+.+.+++||. .+.|.+++.+++..+|...+... ...+++++++.+++ ...|++|.++++
T Consensus 153 IL~Tt~---~~KLl~TI~SRcq----~ieF~~Ls~~eL~~~L~~il~ke--gi~Is~eal~~La~---lS~GdlR~Alnl 220 (605)
T PRK05896 153 IFATTE---FQKIPLTIISRCQ----RYNFKKLNNSELQELLKSIAKKE--KIKIEDNAIDKIAD---LADGSLRDGLSI 220 (605)
T ss_pred EEECCC---hHhhhHHHHhhhh----hcccCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCcHHHHHHH
Confidence 666652 5677889999996 79999999999999999999876 35689999999987 677999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++.+..... . .|+.+++...+
T Consensus 221 LekL~~y~~--~-------~It~e~V~ell 241 (605)
T PRK05896 221 LDQLSTFKN--S-------EIDIEDINKTF 241 (605)
T ss_pred HHHHHhhcC--C-------CCCHHHHHHHh
Confidence 998654321 2 37776666643
No 60
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.9e-17 Score=174.26 Aligned_cols=230 Identities=18% Similarity=0.287 Sum_probs=157.3
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.|..+|+|... ++++|++..++.|..++.. +.-.+.+|++||+|+|||++|+.+++.+.+... ....-.|..
T Consensus 7 ~l~~KyRP~~f----~dIiGQe~~v~~L~~aI~~---~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~-~~~~~pC~~ 78 (725)
T PRK07133 7 ALYRKYRPKTF----DDIVGQDHIVQTLKNIIKS---NKISHAYLFSGPRGTGKTSVAKIFANALNCSHK-TDLLEPCQE 78 (725)
T ss_pred hHHHHhCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhccccc-CCCCCchhH
Confidence 57778888877 8999999999998888863 344566789999999999999999998753211 000011211
Q ss_pred CCCHHHHHHHHHHHhcCC-CCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 259 VRNAASVYETIVNELKLK-PGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 259 ~~~~~~l~~~i~~~l~~~-~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
+.. ....-..-+... ....+.+++++.+..+.. ..++..|+||||+|.|....++.|...++. +...+++|
T Consensus 79 C~~---~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE---PP~~tifI 152 (725)
T PRK07133 79 CIE---NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE---PPKHVIFI 152 (725)
T ss_pred HHH---hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc---CCCceEEE
Confidence 110 000000000000 011234555554433321 125567999999999988778888877774 34466777
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
++|+. .+.+.+.+++||. .+.|.+++.+++..+|...+...+ ..+++++++.+++ ...|++|.+++++
T Consensus 153 LaTte---~~KLl~TI~SRcq----~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~---lS~GslR~AlslL 220 (725)
T PRK07133 153 LATTE---VHKIPLTILSRVQ----RFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAK---LSSGSLRDALSIA 220 (725)
T ss_pred EEcCC---hhhhhHHHHhhce----eEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 66652 4677888999995 899999999999999999888763 5688999999987 6779999999999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGV 443 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a 443 (490)
+.+.... .+ .|+.+++..+
T Consensus 221 ekl~~y~--~~-------~It~e~V~el 239 (725)
T PRK07133 221 EQVSIFG--NN-------KITLKNVEEL 239 (725)
T ss_pred HHHHHhc--cC-------CCCHHHHHHH
Confidence 9876442 22 3666666554
No 61
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=2.6e-17 Score=173.81 Aligned_cols=236 Identities=12% Similarity=0.155 Sum_probs=161.2
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCce---EEEEe
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFK---TIYIN 255 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~---~~~v~ 255 (490)
.+..+|+|... ++++|++..++.|..++.. +..++.++|+||+|+|||++|+.+++.+.+..... ...-.
T Consensus 13 ~la~KyRP~~f----~dliGq~~~v~~L~~~~~~---gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 13 VLARKYRPQTF----DDLIGQEAMVRTLTNAFET---GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hHHhhhCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 45567777766 9999999999999998864 44567899999999999999999999986321100 00012
Q ss_pred ccCCCCHHHHHHHHHHHhc-CC-CCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCc
Q psy200 256 CNSVRNAASVYETIVNELK-LK-PGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSK 331 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~-~~-~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~ 331 (490)
|..+.+...+...-.-++. .. ....+.+++++.+..... ..++..||||||+|.|....++.|...++.+ ...
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP---p~~ 162 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP---PPH 162 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC---CCC
Confidence 2222222111110000000 00 111345555555443321 1245669999999999887788888777643 334
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
++||.+++. .+.+...+++||. .+.|.+++.+++..+|...+..+ ...+++++++.|++ ...|++|.+
T Consensus 163 ~~fIl~tte---~~kll~tI~SRcq----~~~f~~l~~~el~~~L~~i~~ke--gi~i~~eAl~lIa~---~a~Gdlr~a 230 (598)
T PRK09111 163 VKFIFATTE---IRKVPVTVLSRCQ----RFDLRRIEADVLAAHLSRIAAKE--GVEVEDEALALIAR---AAEGSVRDG 230 (598)
T ss_pred eEEEEEeCC---hhhhhHHHHhhee----EEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHH
Confidence 555555653 3456778999995 89999999999999999999877 45689999999987 778999999
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+++++.++... .+ .|+.++|.+.+.
T Consensus 231 l~~Ldkli~~g--~g-------~It~e~V~~llg 255 (598)
T PRK09111 231 LSLLDQAIAHG--AG-------EVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHHHhhc--CC-------CcCHHHHHHHhC
Confidence 99998876442 22 588888887665
No 62
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.2e-17 Score=177.08 Aligned_cols=230 Identities=13% Similarity=0.197 Sum_probs=156.0
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
+.++|+|... ++++|+++.++.|..++.. +.-++.+||+||+|+|||++++.+++.+.+..... .-.|..+
T Consensus 6 l~~k~RP~~f----~~iiGq~~v~~~L~~~i~~---~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~--~~~c~~c 76 (576)
T PRK14965 6 LARKYRPQTF----SDLTGQEHVSRTLQNAIDT---GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT--AEPCNVC 76 (576)
T ss_pred HHHHhCCCCH----HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC--CCCCCcc
Confidence 3456777666 8999999999999888864 33456678999999999999999999986322110 0012222
Q ss_pred CCHHHHHHHHHH---HhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEE
Q psy200 260 RNAASVYETIVN---ELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 260 ~~~~~l~~~i~~---~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vil 334 (490)
.....+..--.. .+.. ......+++.+.+..... ..++..|+||||+|.|....++.|...++.+ ...++|
T Consensus 77 ~~c~~i~~g~~~d~~eid~-~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep---p~~~~f 152 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDG-ASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP---PPHVKF 152 (576)
T ss_pred HHHHHHhcCCCCCeeeeec-cCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC---CCCeEE
Confidence 111111000000 0000 011234455444333221 1245669999999999988888888888743 346666
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
|.+|+. ...+.+.+++||. .+.|.+++.+++...+...+..+ ...++++++..|++ ...||+|.++++
T Consensus 153 Il~t~~---~~kl~~tI~SRc~----~~~f~~l~~~~i~~~L~~i~~~e--gi~i~~~al~~la~---~a~G~lr~al~~ 220 (576)
T PRK14965 153 IFATTE---PHKVPITILSRCQ----RFDFRRIPLQKIVDRLRYIADQE--GISISDAALALVAR---KGDGSMRDSLST 220 (576)
T ss_pred EEEeCC---hhhhhHHHHHhhh----hhhcCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHH---HcCCCHHHHHHH
Confidence 666653 4677888999996 79999999999999999999887 35689999999998 778999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVLGV 443 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~~a 443 (490)
|++++.... + .|+.+++...
T Consensus 221 Ldqliay~g--~-------~It~edV~~l 240 (576)
T PRK14965 221 LDQVLAFCG--D-------AVGDDDVAEL 240 (576)
T ss_pred HHHHHHhcc--C-------CCCHHHHHHH
Confidence 998875532 2 3666665544
No 63
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=6e-17 Score=166.74 Aligned_cols=243 Identities=16% Similarity=0.203 Sum_probs=166.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
.++++|||++|+|||+|++++++++... ++..++|+++ .+++..+...+.. .....+.+. +. .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~----~~~~~f~~~----~~--~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKE----GKLNEFREK----YR--K 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhc----ccHHHHHHH----HH--h
Confidence 4679999999999999999999987532 3567888864 4566666555532 122222222 21 1
Q ss_pred CeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHH
Q psy200 298 KSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEI 375 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~i 375 (490)
.+-+|+|||++.+.... +..++.+++.....+. .+++++.........+.+++.+||.++ ..+.+.+++.+.+.+|
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k-~iIitsd~~p~~l~~l~~rL~SR~~~g-l~v~i~~pd~e~r~~I 271 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDEETRKKI 271 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCC-eEEEECCCCHHHHHHHHHHHhhHHhcC-ceEeeCCCCHHHHHHH
Confidence 34599999999986543 5566666654333333 344443333334455678999999765 3689999999999999
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccC----------------CcccccCHHH
Q psy200 376 ISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKEN----------------GEVTGIGLKE 439 (490)
Q Consensus 376 l~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~----------------~~~~~It~~~ 439 (490)
+++++... ...+++++++.|++ ...||+|.+..++.+....+...+..- .....|+++.
T Consensus 272 L~~~~~~~--~~~l~~ev~~~Ia~---~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~~~~~~~~~~i~~~~ 346 (440)
T PRK14088 272 ARKMLEIE--HGELPEEVLNFVAE---NVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDFIKPNRVKAMDPIDE 346 (440)
T ss_pred HHHHHHhc--CCCCCHHHHHHHHh---ccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccccCCCCHHH
Confidence 99998765 46689999999998 778999998887777654443322100 0012478888
Q ss_pred HHHHHHHhccCccccccccccCCCChHhHHHHH---HHHHHhcCCCCCCcccC
Q psy200 440 VLGVISSVYCTSQSLHCSKDEDSFPLQQKLALA---SLLLLKSRPNVKDVTLG 489 (490)
Q Consensus 440 v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~---al~~~~~~~~~~~~~~g 489 (490)
+.+++.+.++-.. +.+.+...++..++. ||+++.+..+.+...||
T Consensus 347 I~~~V~~~~~i~~-----~~l~s~~R~~~i~~aR~iamyl~r~~~~~s~~~Ig 394 (440)
T PRK14088 347 LIEIVAKVTGVSR-----EEILSNSRNVKALLARRIGMYVAKNYLGSSLRTIA 394 (440)
T ss_pred HHHHHHHHcCCcH-----HHHhCCCCCccccHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888875444 566777777777776 78877777666666655
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.76 E-value=4.5e-17 Score=158.36 Aligned_cols=203 Identities=19% Similarity=0.172 Sum_probs=139.0
Q ss_pred CCCCChHHHHHHHHHHHHhhh----------c-cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC---CceEEEEeccCC
Q psy200 194 CELPGREVQLEGIRQFLLGHV----------N-NETSGSMYISGPPGTGKSASLNLLVSRAEIKD---AFKTIYINCNSV 259 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~----------~-~~~~~~ill~GppGtGKTtla~~l~~~l~~~~---~~~~~~v~~~~~ 259 (490)
.+++|.++.+++|.++..... . ..+..+++|+||||||||++|+++++.+.... .-.++++++..
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~- 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD- 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH-
Confidence 479999998888877544311 0 11345899999999999999999988875322 12567776432
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc---------CHHHHHHhHhCCCCCCC
Q psy200 260 RNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR---------KQTILYTIFEWPSIPGS 330 (490)
Q Consensus 260 ~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~---------~~~~L~~l~~~~~~~~~ 330 (490)
++. . ..|.+.....+.+.++. ..+|||||++.|... .++.|+.+++ ....
T Consensus 101 -----l~~----~----~~g~~~~~~~~~~~~a~-----~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le---~~~~ 159 (284)
T TIGR02880 101 -----LVG----Q----YIGHTAPKTKEILKRAM-----GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME---NQRD 159 (284)
T ss_pred -----HhH----h----hcccchHHHHHHHHHcc-----CcEEEEechhhhccCCCccchHHHHHHHHHHHHh---cCCC
Confidence 221 1 12233344444444332 249999999988422 2345555554 2345
Q ss_pred cEEEEEecCC--CChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH-----H
Q psy200 331 KLVLVGVANA--LDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVA-----A 403 (490)
Q Consensus 331 ~vilI~~tn~--~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~-----~ 403 (490)
.+++|++++. ++....+.+.+.+||. ..|.|++|+.+|+..|+.+.+... ...+++++++.+.+.+. .
T Consensus 160 ~~~vI~a~~~~~~~~~~~~np~L~sR~~---~~i~fp~l~~edl~~I~~~~l~~~--~~~l~~~a~~~L~~~l~~~~~~~ 234 (284)
T TIGR02880 160 DLVVILAGYKDRMDSFFESNPGFSSRVA---HHVDFPDYSEAELLVIAGLMLKEQ--QYRFSAEAEEAFADYIALRRTQP 234 (284)
T ss_pred CEEEEEeCCcHHHHHHHhhCHHHHhhCC---cEEEeCCcCHHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHHhCCCC
Confidence 6777777653 3334445789999998 479999999999999999999876 35688999888877443 6
Q ss_pred hhCCHHHHHHHHHHHHHHHH
Q psy200 404 VSGDIRKAIDITNHLIDLTY 423 (490)
Q Consensus 404 ~~Gd~r~ai~ll~~a~~~a~ 423 (490)
|.||.|.+.+++++++....
T Consensus 235 ~~GN~R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 235 HFANARSIRNAIDRARLRQA 254 (284)
T ss_pred CCChHHHHHHHHHHHHHHHH
Confidence 78999999999999876544
No 65
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.76 E-value=5.1e-17 Score=170.67 Aligned_cols=220 Identities=16% Similarity=0.157 Sum_probs=151.6
Q ss_pred CCCCChHHHHHHHHHHHHhhh--------ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV--------NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~--------~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++.++++.+++.... ....+++++|+||||||||+++++++.++. ..++++++..+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~----~~~~~i~~~~~------ 124 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG----VPFFSISGSDF------ 124 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC----CCeeeccHHHH------
Confidence 778999888888877665321 123567899999999999999999999864 56677755432
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH-----------HHHHHhHhCC--CCCCCcE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ-----------TILYTIFEWP--SIPGSKL 332 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~-----------~~L~~l~~~~--~~~~~~v 332 (490)
.. .+.+.+...+.+.|..+.. ..|+||||||+|.+....+ ..+..++... ......+
T Consensus 125 ~~--------~~~g~~~~~l~~~f~~a~~--~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 125 VE--------MFVGVGASRVRDLFEQAKK--NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HH--------HHhcccHHHHHHHHHHHHh--cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11 1223445566666666544 4578999999999864321 2233333221 1234569
Q ss_pred EEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHH
Q psy200 333 VLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIR 409 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r 409 (490)
+||++||. ++.+++.+.+ ||. ..+.+..++.++..+|++.++..... -.+..+..+++ .+.| ...
T Consensus 195 ~vI~aTn~---~~~ld~al~r~gRfd---~~i~i~~Pd~~~R~~il~~~l~~~~~---~~~~~l~~la~---~t~G~sga 262 (495)
T TIGR01241 195 IVIAATNR---PDVLDPALLRPGRFD---RQVVVDLPDIKGREEILKVHAKNKKL---APDVDLKAVAR---RTPGFSGA 262 (495)
T ss_pred EEEEecCC---hhhcCHHHhcCCcce---EEEEcCCCCHHHHHHHHHHHHhcCCC---CcchhHHHHHH---hCCCCCHH
Confidence 99999985 4566677765 666 58999999999999999998876421 13445667776 3344 334
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
.+.++|+.|...+.+++ ...|+.+++..|+..+...
T Consensus 263 dl~~l~~eA~~~a~~~~-----~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 263 DLANLLNEAALLAARKN-----KTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred HHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHhcc
Confidence 55568888887777766 5689999999999987643
No 66
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.76 E-value=8.3e-17 Score=152.51 Aligned_cols=208 Identities=14% Similarity=0.203 Sum_probs=138.1
Q ss_pred CCCCC-hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPG-REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvg-re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
+.++| ....+..+..+.. ......++|+||+|+|||+|++++++++.. .+..+.|+++.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~----~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~~~~----------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALR----QEHSGYIYLWSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDKRAW----------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHh----CCCCCeEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHHHhh-----------
Confidence 34445 3344444444443 345578999999999999999999998753 245666765432100
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEec-CCCChhHhhhH
Q psy200 273 LKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVA-NALDLTDRMLP 349 (490)
Q Consensus 273 l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~t-n~~~~~~~l~~ 349 (490)
...++.+. +.. ..+|+|||+|.+... .+..|+.+++.....+ +..+|+++ +.......+.+
T Consensus 87 --------~~~~~~~~----~~~---~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g-~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 87 --------FVPEVLEG----MEQ---LSLVCIDNIECIAGDELWEMAIFDLYNRILESG-RTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred --------hhHHHHHH----hhh---CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcC-CCeEEEeCCCChHHcCcccH
Confidence 01112222 211 238999999999754 3566777765432222 22233333 33222233578
Q ss_pred HhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccC
Q psy200 350 RLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKEN 429 (490)
Q Consensus 350 ~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~ 429 (490)
.+++|+.++. .+.+.+++.+++.+++++++... ...+++++++.|++ ...||+|.+++++++....+...+
T Consensus 151 ~L~SRl~~g~-~~~l~~~~~~~~~~~l~~~a~~~--~~~l~~~v~~~L~~---~~~~d~r~l~~~l~~l~~~~l~~~--- 221 (235)
T PRK08084 151 DLASRLDWGQ-IYKLQPLSDEEKLQALQLRARLR--GFELPEDVGRFLLK---RLDREMRTLFMTLDQLDRASITAQ--- 221 (235)
T ss_pred HHHHHHhCCc-eeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---hhcCCHHHHHHHHHHHHHHHHhcC---
Confidence 9999996553 69999999999999998877665 46799999999998 889999999999998643443333
Q ss_pred CcccccCHHHHHHHHH
Q psy200 430 GEVTGIGLKEVLGVIS 445 (490)
Q Consensus 430 ~~~~~It~~~v~~a~~ 445 (490)
..||.+.+.+++.
T Consensus 222 ---~~it~~~~k~~l~ 234 (235)
T PRK08084 222 ---RKLTIPFVKEILK 234 (235)
T ss_pred ---CCCCHHHHHHHHc
Confidence 4699999988763
No 67
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.75 E-value=9.6e-17 Score=162.25 Aligned_cols=234 Identities=17% Similarity=0.252 Sum_probs=155.3
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
+|.++|.+... ++++|+++.++.|..++.. +..++.++|+||+|+|||++++.+++.+.....-. +..|..
T Consensus 3 ~~~~~~rp~~~----~~iig~~~~~~~l~~~~~~---~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~--~~~c~~ 73 (355)
T TIGR02397 3 VLARKYRPQTF----EDVIGQEHIVQTLKNAIKN---GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD--GEPCNE 73 (355)
T ss_pred cHHHHhCCCcH----hhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CCCCCC
Confidence 57778888777 8999999999999998863 34456789999999999999999999875321100 011222
Q ss_pred CCCHHHHHHHHHHHhc-CC-CCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEE
Q psy200 259 VRNAASVYETIVNELK-LK-PGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 259 ~~~~~~l~~~i~~~l~-~~-~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vil 334 (490)
+.+...+.....-.+. .. ....+...+.+.+..+... .+...||||||+|.+....++.|...++. ....+++
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~---~~~~~~l 150 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE---PPEHVVF 150 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC---CccceeE
Confidence 1111111100000000 00 0012233344443332211 24456999999999987667777776653 2345666
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
|.+++. .+.+.+.+++||. .+.|.+++.+++..++..++... ...+++++++.+++ ...||++.+++.
T Consensus 151 Il~~~~---~~~l~~~l~sr~~----~~~~~~~~~~~l~~~l~~~~~~~--g~~i~~~a~~~l~~---~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTE---PHKIPATILSRCQ----RFDFKRIPLEDIVERLKKILDKE--GIKIEDEALELIAR---AADGSLRDALSL 218 (355)
T ss_pred EEEeCC---HHHHHHHHHhhee----EEEcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCChHHHHHH
Confidence 666653 4566788999985 79999999999999999999876 35689999999987 677999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
++.+.... .+ .|+.++|.+++.
T Consensus 219 lekl~~~~--~~-------~it~~~v~~~~~ 240 (355)
T TIGR02397 219 LDQLISFG--NG-------NITYEDVNELLG 240 (355)
T ss_pred HHHHHhhc--CC-------CCCHHHHHHHhC
Confidence 98887642 12 477777766554
No 68
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.75 E-value=7.3e-18 Score=177.29 Aligned_cols=243 Identities=18% Similarity=0.231 Sum_probs=166.6
Q ss_pred ccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCce
Q psy200 177 LLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFK 250 (490)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~ 250 (490)
..+|.++|++... ++++|++..++.+...+. .....+++|+||+|||||++|+++++..... .+..
T Consensus 52 ~~~~~~~~rp~~f----~~iiGqs~~i~~l~~al~----~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 52 TEPLSEKTRPKSF----DEIIGQEEGIKALKAALC----GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred cchHHHhhCcCCH----HHeeCcHHHHHHHHHHHh----CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 3467778887766 889999999988886653 4567899999999999999999998765321 1346
Q ss_pred EEEEeccCCC-CHHHHHHHHHHHhcCC-CCCCc---HHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCC
Q psy200 251 TIYINCNSVR-NAASVYETIVNELKLK-PGGKS---ERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWP 325 (490)
Q Consensus 251 ~~~v~~~~~~-~~~~l~~~i~~~l~~~-~~~~s---~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~ 325 (490)
++.++|.... +...+...++.....+ +.+.. .......-...+.. ...-+|||||++.|....|+.|..+++..
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~-a~gG~L~IdEI~~L~~~~q~~LL~~Le~~ 202 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR-AHGGVLFIDEIGELHPVQMNKLLKVLEDR 202 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc-cCCcEEEEechhhCCHHHHHHHHHHHHhC
Confidence 7889886431 2222211221111000 00000 00000000001111 11349999999999999999888876532
Q ss_pred C-------------------------CCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHH
Q psy200 326 S-------------------------IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKL 380 (490)
Q Consensus 326 ~-------------------------~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l 380 (490)
. .....+.+|++|+.. ++.+.+.+++||. .+.|.+|+.+++..++++.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~--p~~L~paLrsR~~----~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 203 KVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRN--PEEIPPALRSRCV----EIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred eeeeccccccccCcccccchhhhcccCcccceEEEEEecCC--cccCChHHhhhhh----eeeCCCCCHHHHHHHHHHHH
Confidence 1 012356777776532 3456788999985 79999999999999999999
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 381 KQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 381 ~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
... ...+++++++.|.. ++.|.|.++++++.|..+|..++ ...|+.+||..++.
T Consensus 277 ~k~--~i~is~~al~~I~~----y~~n~Rel~nll~~Aa~~A~~~~-----~~~It~~dI~~vl~ 330 (531)
T TIGR02902 277 EKI--GINLEKHALELIVK----YASNGREAVNIVQLAAGIALGEG-----RKRILAEDIEWVAE 330 (531)
T ss_pred HHc--CCCcCHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhCC-----CcEEcHHHHHHHhC
Confidence 876 36789999998876 44589999999999998887776 56899999999986
No 69
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=3.5e-17 Score=166.96 Aligned_cols=237 Identities=14% Similarity=0.181 Sum_probs=158.1
Q ss_pred CcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCce------EEEEe
Q psy200 182 DKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFK------TIYIN 255 (490)
Q Consensus 182 ~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~------~~~v~ 255 (490)
++|+|... ++++|++..++.|..++.. +.-++.++|+||+|+||||+|+.+++.+....... ...-.
T Consensus 8 ~k~RP~~~----~eiiGq~~~~~~L~~~~~~---~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 8 RKYRPKKF----ADITAQEHITRTIQNSLRM---GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred HhcCCCcH----hhccChHHHHHHHHHHHHh---CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 46777666 9999999999988888863 33455699999999999999999999986421100 00113
Q ss_pred ccCCCCHHHHHHHHHHHhc-CCC-CCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCc
Q psy200 256 CNSVRNAASVYETIVNELK-LKP-GGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSK 331 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~-~~~-~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~ 331 (490)
|..+.+...+..-..-.+. ... .....+++.+....... ..+...||||||+|.|....++.|...++. ....
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe---p~~~ 157 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE---PPPH 157 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc---CCCC
Confidence 3333222222110000000 000 11224555554433321 124566999999999987777777777663 2334
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
.++|.+++. ...+.+.+++|+. .+.|.+++.+++.+++...+... ...+++++++.+++ ...|+++.+
T Consensus 158 t~~Il~t~~---~~kl~~tl~sR~~----~v~f~~l~~~ei~~~l~~~~~~~--g~~i~~~al~~l~~---~s~g~lr~a 225 (397)
T PRK14955 158 AIFIFATTE---LHKIPATIASRCQ----RFNFKRIPLEEIQQQLQGICEAE--GISVDADALQLIGR---KAQGSMRDA 225 (397)
T ss_pred eEEEEEeCC---hHHhHHHHHHHHH----HhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHH
Confidence 455545542 3677788999985 79999999999999999998876 45689999999987 778999999
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++.|+.+...+...+. ...|+.++|.+++
T Consensus 226 ~~~L~kl~~~~~~~~~----~~~It~~~v~~~v 254 (397)
T PRK14955 226 QSILDQVIAFSVESEG----EGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHhccccCC----CCccCHHHHHHHH
Confidence 9999988776642111 2478888887665
No 70
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.75 E-value=9.2e-17 Score=166.84 Aligned_cols=211 Identities=17% Similarity=0.250 Sum_probs=142.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
..+.++|||++|+|||+|++++++++... .+..++|+++.. +...+...+.. .....+ .+.+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~----~~~~~~----~~~~~-- 210 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRN----NTMEEF----KEKYR-- 210 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHc----CcHHHH----HHHHh--
Confidence 34679999999999999999999998633 256788886543 34444444421 112222 22232
Q ss_pred CCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 297 HKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
...+|+|||+|.+.... ++.++.+++.....+.. ++|++.........+.+++.+||..+ ..+.|.+++.+++.+
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~-iiits~~~p~~l~~l~~~l~SRl~~g-l~v~i~~pd~~~r~~ 287 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQ-IVLTSDRPPKELPGLEERLRSRFEWG-LTVDIEPPDLETRIA 287 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCc-EEEECCCCHHHHHHHHHHHHhHhcCC-eeEEecCCCHHHHHH
Confidence 24599999999997653 56677766544333333 44443333333344678899999644 369999999999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhcccc--------------CCcccccCHHHH
Q psy200 375 IISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKE--------------NGEVTGIGLKEV 440 (490)
Q Consensus 375 il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~--------------~~~~~~It~~~v 440 (490)
+|+.++... ...+++++++.|++ ...||+|.+..+|......+...+.. ......|+.+.|
T Consensus 288 il~~~~~~~--~~~l~~e~l~~ia~---~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~~~~~~i 362 (450)
T PRK00149 288 ILKKKAEEE--GIDLPDEVLEFIAK---NITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENI 362 (450)
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHc---CcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCCHHHH
Confidence 999998865 46789999999998 78999999988887776665443310 011234667777
Q ss_pred HHHHHHhccCcc
Q psy200 441 LGVISSVYCTSQ 452 (490)
Q Consensus 441 ~~a~~~~~~~~~ 452 (490)
.+++.+.++-..
T Consensus 363 ~~~v~~~~~i~~ 374 (450)
T PRK00149 363 QKVVAEYYNIKV 374 (450)
T ss_pred HHHHHHHcCCCH
Confidence 777766665433
No 71
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.75 E-value=1.5e-16 Score=165.85 Aligned_cols=264 Identities=14% Similarity=0.188 Sum_probs=169.8
Q ss_pred CCCCChHHHH--HHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCceEEEEeccCCCCHHHHHHHHH
Q psy200 194 CELPGREVQL--EGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEI-KDAFKTIYINCNSVRNAASVYETIV 270 (490)
Q Consensus 194 ~~lvgre~~~--~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~~~~~v~~~~~~~~~~l~~~i~ 270 (490)
+.++|-...+ ..+..++.. .....+.++|||++|+|||+|++++++++.. ..++.++|+++ .+|+..+.
T Consensus 289 nFvvG~sN~~A~aaa~avae~--~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~ 360 (617)
T PRK14086 289 TFVIGASNRFAHAAAVAVAEA--PAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFI 360 (617)
T ss_pred hhcCCCccHHHHHHHHHHHhC--ccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHH
Confidence 4555665442 233333332 1223456999999999999999999999853 24578888854 44444444
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecC-CCChhHhh
Q psy200 271 NELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVAN-ALDLTDRM 347 (490)
Q Consensus 271 ~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn-~~~~~~~l 347 (490)
..+.. ..... |.+.+. ..-+|+||||+.+.... ++.|+++++.....+..++|. ++ .......+
T Consensus 361 ~al~~----~~~~~----f~~~y~---~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIIT--Sd~~P~eL~~l 427 (617)
T PRK14086 361 NSIRD----GKGDS----FRRRYR---EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLS--SDRPPKQLVTL 427 (617)
T ss_pred HHHHh----ccHHH----HHHHhh---cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEe--cCCChHhhhhc
Confidence 44322 11222 223332 24599999999997653 677888887655445555543 33 22223456
Q ss_pred hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccc
Q psy200 348 LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVK 427 (490)
Q Consensus 348 ~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~ 427 (490)
.++|++||.++. .+.+.+++.+...+||++++... ...++++++++|++ ...+|+|.+..+|.+....+...+.
T Consensus 428 ~~rL~SRf~~GL-vv~I~~PD~EtR~aIL~kka~~r--~l~l~~eVi~yLa~---r~~rnvR~LegaL~rL~a~a~~~~~ 501 (617)
T PRK14086 428 EDRLRNRFEWGL-ITDVQPPELETRIAILRKKAVQE--QLNAPPEVLEFIAS---RISRNIRELEGALIRVTAFASLNRQ 501 (617)
T ss_pred cHHHHhhhhcCc-eEEcCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHhhCC
Confidence 788999997663 69999999999999999998876 56789999999998 7788999988877776555543321
Q ss_pred cC---------------CcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHH---HHHHHHhcCCCCCCcccC
Q psy200 428 EN---------------GEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLAL---ASLLLLKSRPNVKDVTLG 489 (490)
Q Consensus 428 ~~---------------~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL---~al~~~~~~~~~~~~~~g 489 (490)
.- .....|+.+.|.+++.+.++-.. +.|.+-.....+++ .||+++.+..+.+...||
T Consensus 502 ~itl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f~v~~-----~dl~s~~R~~~i~~aRqiAMYL~r~lt~~Sl~~IG 576 (617)
T PRK14086 502 PVDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFGLTV-----EDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIG 576 (617)
T ss_pred CCCHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHhCCCH-----HHHhCCCCCcccchHHHHHHHHHHHHcCCCHHHHH
Confidence 10 11235788888888888876544 23333333333332 366666666666665555
No 72
>KOG0733|consensus
Probab=99.75 E-value=3.5e-17 Score=164.98 Aligned_cols=229 Identities=17% Similarity=0.225 Sum_probs=157.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++-+.++...+|..++.+-++. ..+.++||+||||||||.||++++++.+ ..|+.|-++.+
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag----~NFisVKGPEL----- 581 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG----ANFISVKGPEL----- 581 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc----CceEeecCHHH-----
Confidence 67788888888888777655432 2578999999999999999999999954 66677755543
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------HHHHHHhH-hCC-CCCCCcEEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------QTILYTIF-EWP-SIPGSKLVL 334 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------~~~L~~l~-~~~-~~~~~~vil 334 (490)
++ .|.|+++..++..|.++.. ..|||||+||+|.|...+ ...+.+|+ ++. ......|.|
T Consensus 582 -lN--------kYVGESErAVR~vFqRAR~--saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~v 650 (802)
T KOG0733|consen 582 -LN--------KYVGESERAVRQVFQRARA--SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYV 650 (802)
T ss_pred -HH--------HHhhhHHHHHHHHHHHhhc--CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEE
Confidence 22 5678899999999998776 569999999999998663 22344443 333 235678999
Q ss_pred EEecCCCChhHhhhHHhh--hccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH--HhhC-CHH
Q psy200 335 VGVANALDLTDRMLPRLQ--ANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVA--AVSG-DIR 409 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~--~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~--~~~G-d~r 409 (490)
|++||+.|+.+ +++. .||+ ..+++..++.+|..+||+...+.. ....-++-.++.|++... +++| |+-
T Consensus 651 iaATNRPDiID---pAiLRPGRlD---k~LyV~lPn~~eR~~ILK~~tkn~-k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 651 IAATNRPDIID---PAILRPGRLD---KLLYVGLPNAEERVAILKTITKNT-KPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred EeecCCCcccc---hhhcCCCccC---ceeeecCCCHHHHHHHHHHHhccC-CCCCCcccCHHHHhhcccccCCchhhHH
Confidence 99999876654 3333 2444 689999999999999999988753 222334455777876322 2222 222
Q ss_pred HHHHHHHHHHHHHHhccccC-------Cc----ccccCHHHHHHHHHHhccCcc
Q psy200 410 KAIDITNHLIDLTYDNVKEN-------GE----VTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~-------~~----~~~It~~~v~~a~~~~~~~~~ 452 (490)
.+++.|...|.++...+ .. ...++..||.+|+..+.++..
T Consensus 724 ---aLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 724 ---ALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred ---HHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCcc
Confidence 35666655554432211 11 224778899999998886544
No 73
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.75 E-value=1.8e-16 Score=162.71 Aligned_cols=243 Identities=16% Similarity=0.236 Sum_probs=158.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
..+.++|||++|+|||+|++++++++... .+..++|+++. ++...+...+... ....+.+ .+..
T Consensus 135 ~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~----~~~~~~~----~~~~- 199 (405)
T TIGR00362 135 AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN----KMEEFKE----KYRS- 199 (405)
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC----CHHHHHH----HHHh-
Confidence 34679999999999999999999998633 25678888643 3444444444321 2223322 2322
Q ss_pred CCeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 297 HKSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
.-+|+|||+|.+... .++.++.+++.....+..+ +|++.........+.+++.+||..+ ..+.|.+++.+++..
T Consensus 200 --~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~i-iits~~~p~~l~~l~~~l~SRl~~g-~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 200 --VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQI-VLTSDRPPKELPGLEERLRSRFEWG-LVVDIEPPDLETRLA 275 (405)
T ss_pred --CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCE-EEecCCCHHHHhhhhhhhhhhccCC-eEEEeCCCCHHHHHH
Confidence 349999999998765 3566777665433333343 3333333333444678899999643 369999999999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccC--------------CcccccCHHHH
Q psy200 375 IISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKEN--------------GEVTGIGLKEV 440 (490)
Q Consensus 375 il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~--------------~~~~~It~~~v 440 (490)
|++.++... ...+++++++.|++ ...||+|.+..++.+....+...+..- .....|+.++|
T Consensus 276 il~~~~~~~--~~~l~~e~l~~ia~---~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~~~~~~~it~~~I 350 (405)
T TIGR00362 276 ILQKKAEEE--GLELPDEVLEFIAK---NIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAKKKEITIENI 350 (405)
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCHHHH
Confidence 999999876 46789999999998 788999988777776655554322100 11345888888
Q ss_pred HHHHHHhccCccccccccccCCCChHhHHHH---HHHHHHhcCCCCCCcccC
Q psy200 441 LGVISSVYCTSQSLHCSKDEDSFPLQQKLAL---ASLLLLKSRPNVKDVTLG 489 (490)
Q Consensus 441 ~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL---~al~~~~~~~~~~~~~~g 489 (490)
.+++.+.++-.. +.+.+-......+. .||+++.+..+.+...||
T Consensus 351 ~~~Va~~~~v~~-----~~l~~~~r~~~~~~~R~~amyl~~~~~~~s~~~ig 397 (405)
T TIGR00362 351 QEVVAKYYNIKV-----SDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIG 397 (405)
T ss_pred HHHHHHHcCCCH-----HHHhCCCCCcccchHHHHHHHHHHHHcCCCHHHHH
Confidence 888888776444 33333333333322 366666666666655555
No 74
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.7e-16 Score=164.59 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=153.7
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
+|..+|+|... ++++|++..+..|..++.. +.-.+.++|+||+|+|||++|+.+++.+.+..... .-.|..
T Consensus 5 ~~~~kyRP~~f----~diiGq~~i~~~L~~~i~~---~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~--~~pc~~ 75 (486)
T PRK14953 5 PFARKYRPKFF----KEVIGQEIVVRILKNAVKL---QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE--GEPCGK 75 (486)
T ss_pred HHHHhhCCCcH----HHccChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC--CCCCCc
Confidence 56778888777 8999999999998888864 23445577999999999999999999875311100 001111
Q ss_pred CCCHHHHHHHHHHH---hcCCCCCCcHHHHHHHHHHHH--hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 259 VRNAASVYETIVNE---LKLKPGGKSERHQLGAILKYF--DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 259 ~~~~~~l~~~i~~~---l~~~~~~~s~~~~~~~l~~~l--~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
+.+...+...-..+ +.. ......+.++....... -..++..|+||||+|.|....++.|...++.+ ...++
T Consensus 76 c~nc~~i~~g~~~d~~eida-as~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep---p~~~v 151 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDA-ASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP---PPRTI 151 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeC-ccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC---CCCeE
Confidence 11111100000000 000 01122333333222211 11255679999999999877777777777643 33445
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
+|.+++. .+.+.+.+.+||. .+.|.+++.+++..++..++...+ ..+++++++.|++ ...|++|.+++
T Consensus 152 ~Il~tt~---~~kl~~tI~SRc~----~i~f~~ls~~el~~~L~~i~k~eg--i~id~~al~~La~---~s~G~lr~al~ 219 (486)
T PRK14953 152 FILCTTE---YDKIPPTILSRCQ----RFIFSKPTKEQIKEYLKRICNEEK--IEYEEKALDLLAQ---ASEGGMRDAAS 219 (486)
T ss_pred EEEEECC---HHHHHHHHHHhce----EEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH---HcCCCHHHHHH
Confidence 5545542 4556778889985 799999999999999999998873 5689999999997 67799999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+|+.++..+ . ..|+.++|..++.
T Consensus 220 ~Ldkl~~~~--~-------~~It~~~V~~~lg 242 (486)
T PRK14953 220 LLDQASTYG--E-------GKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHhc--C-------CCcCHHHHHHHhC
Confidence 999987442 2 2577777777543
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.74 E-value=7.1e-17 Score=163.26 Aligned_cols=218 Identities=17% Similarity=0.202 Sum_probs=145.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|+++++++|.+++...+.. ..+.+++|+||||||||++|+++++++. ..++.+.+. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~----~~~~~v~~~------~ 191 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN----ATFIRVVGS------E 191 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC----CCEEecchH------H
Confidence 68999999999999988654332 2467899999999999999999999875 344444322 2
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCC--CCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWP--SIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~--~~~~~~ 331 (490)
+... +.+.....+...+..+. ...++||||||+|.+.... +..+..++... .....+
T Consensus 192 l~~~--------~~g~~~~~i~~~f~~a~--~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 192 LVRK--------YIGEGARLVREIFELAK--EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHH--------hhhHHHHHHHHHHHHHH--hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 2211 12222333333333322 2457899999999985331 23444444321 123457
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIR 409 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r 409 (490)
+.||++||.. +.+++.+.+ ||. ..+.|++|+.++..+|+..++...... .+..++.+++...+.. .+
T Consensus 262 v~vI~ttn~~---~~ld~al~r~grfd---~~i~v~~P~~~~r~~Il~~~~~~~~l~---~~~~~~~la~~t~g~s--g~ 330 (364)
T TIGR01242 262 VKVIAATNRP---DILDPALLRPGRFD---RIIEVPLPDFEGRLEILKIHTRKMKLA---EDVDLEAIAKMTEGAS--GA 330 (364)
T ss_pred EEEEEecCCh---hhCChhhcCcccCc---eEEEeCCcCHHHHHHHHHHHHhcCCCC---ccCCHHHHHHHcCCCC--HH
Confidence 8999999854 445566653 565 479999999999999999887654211 1123566665332222 33
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHh
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
.+..+|..|...|..++ ...|+.+||.+|+..+
T Consensus 331 dl~~l~~~A~~~a~~~~-----~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 331 DLKAICTEAGMFAIREE-----RDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHHHHHhC-----CCccCHHHHHHHHHHh
Confidence 44468999999998888 6789999999999875
No 76
>KOG1970|consensus
Probab=99.74 E-value=7.2e-17 Score=161.42 Aligned_cols=229 Identities=15% Similarity=0.225 Sum_probs=141.8
Q ss_pred CccccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhh---ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCce
Q psy200 174 PRKLLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHV---NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFK 250 (490)
Q Consensus 174 p~~~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~---~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~ 250 (490)
......|.++|.|... ++|..|.+.+.+|.+||.... ..-..+.+||+||+||||||+++.++++++ +.
T Consensus 66 ~d~~elW~eKy~P~t~----eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg----~~ 137 (634)
T KOG1970|consen 66 EDEFELWVEKYKPRTL----EELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG----YQ 137 (634)
T ss_pred ccccchhHHhcCcccH----HHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC----ce
Confidence 4567789999999999 999999999999999998322 223567899999999999999999999987 55
Q ss_pred EEEEe-ccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----------cCCCeEEEEEecCcccccc-CHHHH
Q psy200 251 TIYIN-CNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD----------TKHKSILLILDEIDALESR-KQTIL 318 (490)
Q Consensus 251 ~~~v~-~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~----------~~~~~~vI~IDEid~l~~~-~~~~L 318 (490)
++.+. ...+.....+ +.--..+. .........+..++..+.+ ..+.+.+|+|||+.+.+.. ..+.+
T Consensus 138 ~~Ew~Npi~~~~~~~~-h~~t~~~~-~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f 215 (634)
T KOG1970|consen 138 LIEWSNPINLKEPENL-HNETSFLM-FPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETF 215 (634)
T ss_pred eeeecCCccccccccc-cccchhcc-cchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHH
Confidence 55544 2222111100 00000000 0000112223333333322 1134679999999999876 44444
Q ss_pred HHhHhCC-CCCCCcEEEEEecCC----CChhHhhh-HHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCC----
Q psy200 319 YTIFEWP-SIPGSKLVLVGVANA----LDLTDRML-PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNM---- 388 (490)
Q Consensus 319 ~~l~~~~-~~~~~~vilI~~tn~----~~~~~~l~-~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~---- 388 (490)
...+... ......+|+ ++|+. .+..+++. ..+..+.++ ..|.|+|+...-+++.|...|..+.....
T Consensus 216 ~evL~~y~s~g~~PlIf-~iTd~~~~g~nnq~rlf~~d~q~~~ri--~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPLIF-IITDSLSNGNNNQDRLFPKDIQEEPRI--SNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred HHHHHHHHhcCCCcEEE-EEeccccCCCcchhhhchhhhhhccCc--ceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 4443322 233444444 44431 12233332 234433333 58999999999999999999988732211
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy200 389 FNASALQLLAGKVAAVSGDIRKAIDITNHL 418 (490)
Q Consensus 389 ~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a 418 (490)
-+...++.|+. +..||+|.||+.|+..
T Consensus 293 ~~~~~v~~i~~---~s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 293 PDTAEVELICQ---GSGGDIRSAINSLQLS 319 (634)
T ss_pred chhHHHHHHHH---hcCccHHHHHhHhhhh
Confidence 12444566655 7999999999998876
No 77
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=7.7e-17 Score=170.47 Aligned_cols=237 Identities=14% Similarity=0.191 Sum_probs=159.6
Q ss_pred cchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCce------EEEEec
Q psy200 183 KPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFK------TIYINC 256 (490)
Q Consensus 183 ~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~------~~~v~~ 256 (490)
+|+|... ++++|++..+..|..++.. +.-++.++|+||+|+||||+|+.+++.+....... -..-.|
T Consensus 9 kyRP~~f----~eivGQe~i~~~L~~~i~~---~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 9 KYRPSKF----ADITAQEHITHTIQNSLRM---DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred HHCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 5666656 8999999999988888763 34456699999999999999999999986422110 001134
Q ss_pred cCCCCHHHHHHHHHHHhc-CC-CCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcE
Q psy200 257 NSVRNAASVYETIVNELK-LK-PGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKL 332 (490)
Q Consensus 257 ~~~~~~~~l~~~i~~~l~-~~-~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~v 332 (490)
..+.+...+..--.-.+. .. ....+.+++++.+..... ..+...|+||||+|.|....++.|...++.+ ....
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP---p~~t 158 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP---PPHA 158 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC---CCCe
Confidence 444332222110000000 00 011235566655444321 1244569999999999887788888877643 3345
Q ss_pred EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 333 VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
++|.+++. ...+.+.+++||. .+.|.+++.+++..++...+..+ ...+++++++.|++ ...||++.++
T Consensus 159 v~IL~t~~---~~kLl~TI~SRc~----~vef~~l~~~ei~~~L~~i~~~e--gi~I~~eal~~La~---~s~Gdlr~al 226 (620)
T PRK14954 159 IFIFATTE---LHKIPATIASRCQ----RFNFKRIPLDEIQSQLQMICRAE--GIQIDADALQLIAR---KAQGSMRDAQ 226 (620)
T ss_pred EEEEEeCC---hhhhhHHHHhhce----EEecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HhCCCHHHHH
Confidence 55555542 4677888999985 89999999999999999988876 35689999999987 7789999999
Q ss_pred HHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 413 DITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 413 ~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+.++....++...+. ...|+.++|.+.+.
T Consensus 227 ~eLeKL~~y~~~~~~----~~~It~~~V~~lv~ 255 (620)
T PRK14954 227 SILDQVIAFSVGSEA----EKVIAYQGVAELLN 255 (620)
T ss_pred HHHHHHHHhcccccc----CCccCHHHHHHHHc
Confidence 999988776632211 24688877776653
No 78
>KOG0728|consensus
Probab=99.74 E-value=5.7e-17 Score=147.11 Aligned_cols=225 Identities=16% Similarity=0.227 Sum_probs=158.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+.+-|.+++++++.+.++-.++ -..+++++||||||+|||.|+++++++ ..+.|+.++++ +
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh----t~c~firvsgs------e 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSGS------E 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh----cceEEEEechH------H
Confidence 5567779999999987764432 236789999999999999999999987 44778888543 3
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~ 331 (490)
+.. .+.|.....+++.|.-+.. ..|.+||+||||.+...+ |..++.+++- ......+
T Consensus 217 lvq--------k~igegsrmvrelfvmare--hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 LVQ--------KYIGEGSRMVRELFVMARE--HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHH--------HHhhhhHHHHHHHHHHHHh--cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 333 2334556667777765555 568999999999996442 3333343321 1345678
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
+-+|.+||+.|+.+.. +. |-+.-...|.|+|++.+...+||+-+-++.+... .-.++.|++++.+.+|. ..
T Consensus 287 ikvimatnridild~a---ll-rpgridrkiefp~p~e~ar~~ilkihsrkmnl~r---gi~l~kiaekm~gasga--ev 357 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPA---LL-RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR---GINLRKIAEKMPGASGA--EV 357 (404)
T ss_pred eEEEEeccccccccHh---hc-CCCcccccccCCCCCHHHHHHHHHHhhhhhchhc---ccCHHHHHHhCCCCccc--hh
Confidence 8999999988775543 22 2222224799999999999999886655542112 22367888866666664 23
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
-.+|..|.+.|.++. .-.||.+||+.|+.++.....
T Consensus 358 k~vcteagm~alrer-----rvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 358 KGVCTEAGMYALRER-----RVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred hhhhhhhhHHHHHHh-----hccccHHHHHHHHHHHHhccc
Confidence 458999999998888 678999999999999875443
No 79
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1.4e-16 Score=164.22 Aligned_cols=232 Identities=16% Similarity=0.187 Sum_probs=151.4
Q ss_pred CCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC
Q psy200 181 EDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR 260 (490)
Q Consensus 181 ~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~ 260 (490)
.++|+|... ++++|++..++.|..++.. +.-++.++|+||+|+|||++|+.+++.+.......- .-.|..+.
T Consensus 8 ~~kyRP~~~----~diiGq~~~v~~L~~~i~~---~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~-~~~c~~c~ 79 (451)
T PRK06305 8 SRKYRPQTF----SEILGQDAVVAVLKNALRF---NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTED-QEPCNQCA 79 (451)
T ss_pred HHHhCCCCH----HHhcCcHHHHHHHHHHHHc---CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccC-CCCCcccH
Confidence 345666666 8999999999988888863 334567899999999999999999998853211000 00011110
Q ss_pred CHHHHHHH---HHHHhcCCCCCCcHHHHHHHHHHHH--hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 261 NAASVYET---IVNELKLKPGGKSERHQLGAILKYF--DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 261 ~~~~l~~~---i~~~l~~~~~~~s~~~~~~~l~~~l--~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
+...+-.. -+..+.+. ...+.+++.+...... ...+...||||||+|.|....++.|...++.. ...+++|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~-~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep---~~~~~~I 155 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGA-SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP---PQHVKFF 155 (451)
T ss_pred HHHHHhcCCCCceEEeecc-ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC---CCCceEE
Confidence 10000000 00000000 0112334433222111 11245679999999999877778887777643 3456666
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
++++. ...+.+.+++||. .+.|.+++.+++..++...+... ...+++++++.|++ ...||+|.+++.+
T Consensus 156 l~t~~---~~kl~~tI~sRc~----~v~f~~l~~~el~~~L~~~~~~e--g~~i~~~al~~L~~---~s~gdlr~a~~~L 223 (451)
T PRK06305 156 LATTE---IHKIPGTILSRCQ----KMHLKRIPEETIIDKLALIAKQE--GIETSREALLPIAR---AAQGSLRDAESLY 223 (451)
T ss_pred EEeCC---hHhcchHHHHhce----EEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 66653 3677889999996 89999999999999999988876 35689999999997 6789999999999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+.+.... .+ .|+.++|..++.
T Consensus 224 ekl~~~~--~~-------~It~~~V~~l~~ 244 (451)
T PRK06305 224 DYVVGLF--PK-------SLDPDSVAKALG 244 (451)
T ss_pred HHHHHhc--cC-------CcCHHHHHHHHC
Confidence 8875431 12 477777665543
No 80
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1.7e-16 Score=166.99 Aligned_cols=230 Identities=16% Similarity=0.269 Sum_probs=157.0
Q ss_pred CcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC
Q psy200 182 DKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN 261 (490)
Q Consensus 182 ~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~ 261 (490)
.+|+|... ++++|++..++.|..++.. +.-++.++|+||+|+|||++|+.+++.+....... ...|..+.+
T Consensus 8 ~kyRP~~f----~diiGqe~iv~~L~~~i~~---~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~--~~pC~~C~~ 78 (563)
T PRK06647 8 TKRRPRDF----NSLEGQDFVVETLKHSIES---NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT--PMPCGECSS 78 (563)
T ss_pred HHhCCCCH----HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC--CCCCccchH
Confidence 46666666 8999999999999998874 34556789999999999999999999986321110 012332222
Q ss_pred HHHHHHHHHHHh-cCC-CCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEe
Q psy200 262 AASVYETIVNEL-KLK-PGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGV 337 (490)
Q Consensus 262 ~~~l~~~i~~~l-~~~-~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~ 337 (490)
...+...-.-.+ ... ......+++++....... ..++..|+||||+|.|....++.|...++. ....++||++
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe---pp~~~vfI~~ 155 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE---PPPYIVFIFA 155 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc---CCCCEEEEEe
Confidence 222111000000 000 001234555554433221 124567999999999987777777776653 4456777777
Q ss_pred cCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy200 338 ANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNH 417 (490)
Q Consensus 338 tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~ 417 (490)
++. ...+.+.+++||. .+.|.+++.+++..++...+... ...+++++++.|++ ...|++|.++++|++
T Consensus 156 tte---~~kL~~tI~SRc~----~~~f~~l~~~el~~~L~~i~~~e--gi~id~eAl~lLa~---~s~GdlR~alslLdk 223 (563)
T PRK06647 156 TTE---VHKLPATIKSRCQ----HFNFRLLSLEKIYNMLKKVCLED--QIKYEDEALKWIAY---KSTGSVRDAYTLFDQ 223 (563)
T ss_pred cCC---hHHhHHHHHHhce----EEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHH
Confidence 753 3667789999996 79999999999999999988776 45689999999998 778999999999998
Q ss_pred HHHHHHhccccCCcccccCHHHHHHHH
Q psy200 418 LIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 418 a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++..+ .+ .|+.+++..++
T Consensus 224 lis~~--~~-------~It~e~V~~ll 241 (563)
T PRK06647 224 VVSFS--DS-------DITLEQIRSKM 241 (563)
T ss_pred HHhhc--CC-------CCCHHHHHHHh
Confidence 76542 22 46776666644
No 81
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=1.1e-16 Score=155.48 Aligned_cols=203 Identities=17% Similarity=0.153 Sum_probs=133.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-----------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhc---CCceEEEEeccCC
Q psy200 194 CELPGREVQLEGIRQFLLGHVN-----------NETSGSMYISGPPGTGKSASLNLLVSRAEIK---DAFKTIYINCNSV 259 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~-----------~~~~~~ill~GppGtGKTtla~~l~~~l~~~---~~~~~~~v~~~~~ 259 (490)
++++|.++.+++|.+++..... ...+.+++|+||||||||++|+++++.+... ..-.++++++.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~-- 100 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD-- 100 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH--
Confidence 5799998888887776532110 1134569999999999999999999886421 11245666532
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc---------CHHHHHHhHhCCCCCCC
Q psy200 260 RNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR---------KQTILYTIFEWPSIPGS 330 (490)
Q Consensus 260 ~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~---------~~~~L~~l~~~~~~~~~ 330 (490)
++... +.|.+.......+.++. ..||||||++.+... .++.|..+++ ....
T Consensus 101 ----~l~~~--------~~g~~~~~~~~~l~~a~-----ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me---~~~~ 160 (287)
T CHL00181 101 ----DLVGQ--------YIGHTAPKTKEVLKKAM-----GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME---NQRD 160 (287)
T ss_pred ----HHHHH--------HhccchHHHHHHHHHcc-----CCEEEEEccchhccCCCccchHHHHHHHHHHHHh---cCCC
Confidence 22221 12223333344444321 239999999998422 2344444444 2335
Q ss_pred cEEEEEecCCCCh--hHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH-----
Q psy200 331 KLVLVGVANALDL--TDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAA----- 403 (490)
Q Consensus 331 ~vilI~~tn~~~~--~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~----- 403 (490)
.+++|++++...+ ...+.+.+.+||. ..+.|++|+.+|+..|+...+... ...++++++..+...+..
T Consensus 161 ~~~vI~ag~~~~~~~~~~~np~L~sR~~---~~i~F~~~t~~el~~I~~~~l~~~--~~~l~~~~~~~L~~~i~~~~~~~ 235 (287)
T CHL00181 161 DLVVIFAGYKDRMDKFYESNPGLSSRIA---NHVDFPDYTPEELLQIAKIMLEEQ--QYQLTPEAEKALLDYIKKRMEQP 235 (287)
T ss_pred CEEEEEeCCcHHHHHHHhcCHHHHHhCC---ceEEcCCcCHHHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHhCCCC
Confidence 6777777753322 1223488999998 489999999999999999999876 455788888777765543
Q ss_pred hhCCHHHHHHHHHHHHHHHH
Q psy200 404 VSGDIRKAIDITNHLIDLTY 423 (490)
Q Consensus 404 ~~Gd~r~ai~ll~~a~~~a~ 423 (490)
+.||.|.+.+++++++....
T Consensus 236 ~~GNaR~vrn~ve~~~~~~~ 255 (287)
T CHL00181 236 LFANARSVRNALDRARMRQA 255 (287)
T ss_pred CCccHHHHHHHHHHHHHHHH
Confidence 44889999999988876543
No 82
>KOG0739|consensus
Probab=99.74 E-value=1.7e-17 Score=154.08 Aligned_cols=185 Identities=17% Similarity=0.241 Sum_probs=140.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
+++.|.+...+.|.+.+---++ ..+.+.+||||||||||+.||++|+.+.. -.|+.++. .++
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn----STFFSvSS------SDL 202 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN----STFFSVSS------SDL 202 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC----CceEEeeh------HHH
Confidence 7899999999999886532221 22568999999999999999999999854 45566643 333
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH------------HHHHHhHhCCCCCCCcEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ------------TILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~------------~~L~~l~~~~~~~~~~vi 333 (490)
++ .|.|.++.-+...|+-+.. .+|.||||||||.++..+. +.|.++-. .......++
T Consensus 203 vS--------KWmGESEkLVknLFemARe--~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG-VG~d~~gvL 271 (439)
T KOG0739|consen 203 VS--------KWMGESEKLVKNLFEMARE--NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG-VGNDNDGVL 271 (439)
T ss_pred HH--------HHhccHHHHHHHHHHHHHh--cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc-cccCCCceE
Confidence 33 5667788888888775554 6799999999999986631 22322222 234567899
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCC
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGD 407 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd 407 (490)
|+|+|| +++.++..+++||. .+|+++-+.......+++-++... .+.+++..++.++++..+++|.
T Consensus 272 VLgATN---iPw~LDsAIRRRFe---kRIYIPLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 272 VLGATN---IPWVLDSAIRRRFE---KRIYIPLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred EEecCC---CchhHHHHHHHHhh---cceeccCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCCcC
Confidence 999998 78888999999998 578888888888888888777765 6788999999999988888874
No 83
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=8.9e-17 Score=170.93 Aligned_cols=215 Identities=20% Similarity=0.261 Sum_probs=152.9
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
+|..+|++... ++++|++..++.|..++.. +...+.+||+||+|+|||++|+.+++.+.+........-.|..
T Consensus 5 pl~~kyRP~~f----~~liGq~~i~~~L~~~l~~---~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 5 PLHHKYRPQRF----DELVGQEAIATTLKNALIS---NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred hHHHHhCCCcH----hhccChHHHHHHHHHHHHc---CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 45667877767 8999999999999988874 3345789999999999999999999998632211111112332
Q ss_pred CCCHHHHHHHHHHHhcC------CCCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCC
Q psy200 259 VRNAASVYETIVNELKL------KPGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGS 330 (490)
Q Consensus 259 ~~~~~~l~~~i~~~l~~------~~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~ 330 (490)
+ ..+..+...... .......+.+++.+..+... .++..||||||+|.|....++.|+..++. ...
T Consensus 78 C----~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe---Pp~ 150 (620)
T PRK14948 78 C----ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE---PPP 150 (620)
T ss_pred c----HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc---CCc
Confidence 2 122222111110 11224455666665443321 24567999999999988778888887773 345
Q ss_pred cEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHH
Q psy200 331 KLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRK 410 (490)
Q Consensus 331 ~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ 410 (490)
.++||++++. ..++.+.+++||. .+.|.+++.+++...+...+..+ ...++++++..|++ ...|++|.
T Consensus 151 ~tvfIL~t~~---~~~llpTIrSRc~----~~~f~~l~~~ei~~~L~~ia~ke--gi~is~~al~~La~---~s~G~lr~ 218 (620)
T PRK14948 151 RVVFVLATTD---PQRVLPTIISRCQ----RFDFRRIPLEAMVQHLSEIAEKE--SIEIEPEALTLVAQ---RSQGGLRD 218 (620)
T ss_pred CeEEEEEeCC---hhhhhHHHHhhee----EEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHH---HcCCCHHH
Confidence 6777777763 4568889999996 89999999999999999888776 35588999999987 67899999
Q ss_pred HHHHHHHHH
Q psy200 411 AIDITNHLI 419 (490)
Q Consensus 411 ai~ll~~a~ 419 (490)
++++++...
T Consensus 219 A~~lLekls 227 (620)
T PRK14948 219 AESLLDQLS 227 (620)
T ss_pred HHHHHHHHH
Confidence 999988754
No 84
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.1e-16 Score=170.63 Aligned_cols=229 Identities=16% Similarity=0.205 Sum_probs=154.1
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
|.++|++... ++++|+++.++.|..++.. +..++.++|+||+|+|||++++.+++.+....... ..-.|..+
T Consensus 6 l~~kyRP~~~----~eiiGq~~~~~~L~~~i~~---~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~-~~~~c~~c 77 (585)
T PRK14950 6 LYRKWRSQTF----AELVGQEHVVQTLRNAIAE---GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP-KGRPCGTC 77 (585)
T ss_pred HHHHhCCCCH----HHhcCCHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCccC
Confidence 4467877777 9999999999998888864 33456679999999999999999999885221100 00122222
Q ss_pred CCHHHHHHHHHHHhcC-----CC-CCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCc
Q psy200 260 RNAASVYETIVNELKL-----KP-GGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSK 331 (490)
Q Consensus 260 ~~~~~l~~~i~~~l~~-----~~-~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~ 331 (490)
.....+...... .. ...+.+++++.+..... ..+...||||||+|.|....++.|...++.. ...
T Consensus 78 ----~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep---p~~ 150 (585)
T PRK14950 78 ----EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP---PPH 150 (585)
T ss_pred ----HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC---CCC
Confidence 122222221111 00 12334455444332221 1245679999999999887777787777643 234
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
++||.+++. .+.+.+.+++||. .+.|.+++..++..++...+... ...+++++++.|++ ...||++.+
T Consensus 151 tv~Il~t~~---~~kll~tI~SR~~----~i~f~~l~~~el~~~L~~~a~~e--gl~i~~eal~~La~---~s~Gdlr~a 218 (585)
T PRK14950 151 AIFILATTE---VHKVPATILSRCQ----RFDFHRHSVADMAAHLRKIAAAE--GINLEPGALEAIAR---AATGSMRDA 218 (585)
T ss_pred eEEEEEeCC---hhhhhHHHHhccc----eeeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHH
Confidence 555555542 4557788899985 79999999999999999988876 35689999999987 677999999
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++.|+..... . + ..|+.+++...+
T Consensus 219 l~~LekL~~y--~-~------~~It~e~V~~ll 242 (585)
T PRK14950 219 ENLLQQLATT--Y-G------GEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHh--c-C------CCCCHHHHHHHh
Confidence 9999876542 1 2 357777776543
No 85
>PRK08727 hypothetical protein; Validated
Probab=99.73 E-value=4.7e-16 Score=147.19 Aligned_cols=208 Identities=14% Similarity=0.218 Sum_probs=140.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+.++|-...+..+..... +.....++|+|++|+|||+|++++++++.. .+..++|++.... .
T Consensus 20 ~f~~~~~n~~~~~~~~~~----~~~~~~l~l~G~~G~GKThL~~a~~~~~~~-~~~~~~y~~~~~~------~------- 81 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAA----GQSSDWLYLSGPAGTGKTHLALALCAAAEQ-AGRSSAYLPLQAA------A------- 81 (233)
T ss_pred hccCCcHHHHHHHHHHHh----ccCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEeHHHh------h-------
Confidence 345555555544443332 234467999999999999999999988753 3456777753221 1
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecC-CCChhHhhhHH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVAN-ALDLTDRMLPR 350 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn-~~~~~~~l~~~ 350 (490)
..+.+.+.. + .+.-+|+|||++.+... .+..++++++.....+..+++ +++ ....+..+++.
T Consensus 82 ---------~~~~~~~~~-l---~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~--ts~~~p~~l~~~~~d 146 (233)
T PRK08727 82 ---------GRLRDALEA-L---EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLY--TARQMPDGLALVLPD 146 (233)
T ss_pred ---------hhHHHHHHH-H---hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEE--ECCCChhhhhhhhHH
Confidence 111112222 2 23449999999998754 345677776544333333333 343 33334445789
Q ss_pred hhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCC
Q psy200 351 LQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENG 430 (490)
Q Consensus 351 l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~ 430 (490)
+++|+..+ ..+.|++++.+++..++++++... ...+++++++.|++ ...||+|.++++++.....+...+
T Consensus 147 L~SRl~~~-~~~~l~~~~~e~~~~iL~~~a~~~--~l~l~~e~~~~La~---~~~rd~r~~l~~L~~l~~~~~~~~---- 216 (233)
T PRK08727 147 LRSRLAQC-IRIGLPVLDDVARAAVLRERAQRR--GLALDEAAIDWLLT---HGERELAGLVALLDRLDRESLAAK---- 216 (233)
T ss_pred HHHHHhcC-ceEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 99997543 379999999999999999988765 46789999999998 677999999999998775555444
Q ss_pred cccccCHHHHHHHHHH
Q psy200 431 EVTGIGLKEVLGVISS 446 (490)
Q Consensus 431 ~~~~It~~~v~~a~~~ 446 (490)
..||.+.+.+++..
T Consensus 217 --~~it~~~~~~~l~~ 230 (233)
T PRK08727 217 --RRVTVPFLRRVLEE 230 (233)
T ss_pred --CCCCHHHHHHHHhh
Confidence 37999999988753
No 86
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=3.4e-16 Score=158.75 Aligned_cols=216 Identities=17% Similarity=0.259 Sum_probs=151.4
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------C--Cce
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------D--AFK 250 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~--~~~ 250 (490)
.|.++|+|... ++++|++..++.+..++.. +..+++++||||+|+|||++++.+++.+... . .+.
T Consensus 6 ~~~~k~rP~~~----~~iig~~~~~~~l~~~i~~---~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 6 VSARKYRPQTF----DDVVGQSHITNTLLNAIEN---NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHHHHHCCCcH----HhcCCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 35567777777 9999999999998888864 3456689999999999999999999987531 1 123
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCC
Q psy200 251 TIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIP 328 (490)
Q Consensus 251 ~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~ 328 (490)
++.++.... ...+.+.+.+.++.. ..+++.||||||+|.+....++.|...++. .
T Consensus 79 ~~~l~~~~~--------------------~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~---~ 135 (367)
T PRK14970 79 IFELDAASN--------------------NSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE---P 135 (367)
T ss_pred eEEeccccC--------------------CCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC---C
Confidence 333332211 123344443333211 123456999999999987666666665543 2
Q ss_pred CCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCH
Q psy200 329 GSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDI 408 (490)
Q Consensus 329 ~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~ 408 (490)
....++|.+++. ...+.+.+.+||. .+.|.+++.+++..++...+... ...+++++++.++. ...||+
T Consensus 136 ~~~~~~Il~~~~---~~kl~~~l~sr~~----~v~~~~~~~~~l~~~l~~~~~~~--g~~i~~~al~~l~~---~~~gdl 203 (367)
T PRK14970 136 PAHAIFILATTE---KHKIIPTILSRCQ----IFDFKRITIKDIKEHLAGIAVKE--GIKFEDDALHIIAQ---KADGAL 203 (367)
T ss_pred CCceEEEEEeCC---cccCCHHHHhcce----eEecCCccHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---hCCCCH
Confidence 334455555542 3566788889986 79999999999999999998876 35689999999997 677899
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
|.+++.|+.....+. . .|+.+++..++.
T Consensus 204 r~~~~~lekl~~y~~--~-------~it~~~v~~~~~ 231 (367)
T PRK14970 204 RDALSIFDRVVTFCG--K-------NITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHHHHHhcC--C-------CCCHHHHHHHhC
Confidence 999999988765432 1 266666665543
No 87
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.72 E-value=2.9e-17 Score=167.96 Aligned_cols=218 Identities=17% Similarity=0.255 Sum_probs=159.6
Q ss_pred CcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC
Q psy200 182 DKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN 261 (490)
Q Consensus 182 ~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~ 261 (490)
.+|+|... ++++|++.....|...+.. +.-.+..+++||.||||||+|+.+++.+.+... ...-.|..+..
T Consensus 8 rKyRP~~F----~evvGQe~v~~~L~nal~~---~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~--~~~ePC~~C~~ 78 (515)
T COG2812 8 RKYRPKTF----DDVVGQEHVVKTLSNALEN---GRIAHAYLFSGPRGVGKTTIARILAKALNCENG--PTAEPCGKCIS 78 (515)
T ss_pred HHhCcccH----HHhcccHHHHHHHHHHHHh---CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC--CCCCcchhhhh
Confidence 36777777 8999999999999998874 456678889999999999999999999874432 11112332222
Q ss_pred HHHHHHH-HHHHhcC-CCCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEe
Q psy200 262 AASVYET-IVNELKL-KPGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGV 337 (490)
Q Consensus 262 ~~~l~~~-i~~~l~~-~~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~ 337 (490)
...+-.. ..+-+.. .....+.+++++...+..-. .++.-|.+|||+|.|.....++|+..++ .+...|+||.+
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE---EPP~hV~FIlA 155 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE---EPPSHVKFILA 155 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc---cCccCeEEEEe
Confidence 2111110 0000000 01123566666666654422 3667799999999999877777766655 46678988888
Q ss_pred cCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy200 338 ANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNH 417 (490)
Q Consensus 338 tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~ 417 (490)
|+. ..++...+.+||. ++.|..++.+++...|...+..+ ...++++++..|++ ...|.+|.++.+|.+
T Consensus 156 TTe---~~Kip~TIlSRcq----~f~fkri~~~~I~~~L~~i~~~E--~I~~e~~aL~~ia~---~a~Gs~RDalslLDq 223 (515)
T COG2812 156 TTE---PQKIPNTILSRCQ----RFDFKRLDLEEIAKHLAAILDKE--GINIEEDALSLIAR---AAEGSLRDALSLLDQ 223 (515)
T ss_pred cCC---cCcCchhhhhccc----cccccCCCHHHHHHHHHHHHHhc--CCccCHHHHHHHHH---HcCCChhhHHHHHHH
Confidence 873 4566678889996 89999999999999999999987 57789999999998 889999999999999
Q ss_pred HHHHHH
Q psy200 418 LIDLTY 423 (490)
Q Consensus 418 a~~~a~ 423 (490)
++....
T Consensus 224 ~i~~~~ 229 (515)
T COG2812 224 AIAFGE 229 (515)
T ss_pred HHHccC
Confidence 987654
No 88
>KOG1969|consensus
Probab=99.72 E-value=1.8e-16 Score=162.93 Aligned_cols=214 Identities=20% Similarity=0.298 Sum_probs=161.3
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhc------------------------------cCCCCeEEEECCC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVN------------------------------NETSGSMYISGPP 228 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~------------------------------~~~~~~ill~Gpp 228 (490)
.|+++|.+... .+|+|-+..=..+..||..|-. ....+.+||+|||
T Consensus 260 LWVdky~Pk~F----tdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 260 LWVDKYRPKKF----TDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred eeecccChhHH----HHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 89999999988 8999999999999999988710 1234689999999
Q ss_pred CCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCc
Q psy200 229 GTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEID 308 (490)
Q Consensus 229 GtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid 308 (490)
|.||||||+.+|++.+ |.++.+|++..++...+-..|...+... ..+....+|.+|||||||
T Consensus 336 GlGKTTLAHViAkqaG----YsVvEINASDeRt~~~v~~kI~~avq~~--------------s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAG----YSVVEINASDERTAPMVKEKIENAVQNH--------------SVLDADSRPVCLVIDEID 397 (877)
T ss_pred CCChhHHHHHHHHhcC----ceEEEecccccccHHHHHHHHHHHHhhc--------------cccccCCCcceEEEeccc
Confidence 9999999999999965 9999999999877665554443333221 113345789999999999
Q ss_pred cccccCHHHHHHhHhCC-----CCCC-------------CcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHH
Q psy200 309 ALESRKQTILYTIFEWP-----SIPG-------------SKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSRE 370 (490)
Q Consensus 309 ~l~~~~~~~L~~l~~~~-----~~~~-------------~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~ 370 (490)
--.....+.++.++... ...+ ..=-+||+||. +....++.|+.-+ ..+.|.|++..
T Consensus 398 Ga~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A----~ii~f~~p~~s 471 (877)
T KOG1969|consen 398 GAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFA----EIIAFVPPSQS 471 (877)
T ss_pred CCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccce----EEEEecCCChh
Confidence 98766667777765421 0011 11147788884 4455566666544 48999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhc
Q psy200 371 QILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDN 425 (490)
Q Consensus 371 e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~ 425 (490)
-+.+-|+..|.+++ ...+..++..+++ .+.+|+|..||.|+-....+...
T Consensus 472 ~Lv~RL~~IC~rE~--mr~d~~aL~~L~e---l~~~DIRsCINtLQfLa~~~~r~ 521 (877)
T KOG1969|consen 472 RLVERLNEICHREN--MRADSKALNALCE---LTQNDIRSCINTLQFLASNVDRR 521 (877)
T ss_pred HHHHHHHHHHhhhc--CCCCHHHHHHHHH---HhcchHHHHHHHHHHHHHhcccc
Confidence 99999999999884 5578888998887 77899999999998877665554
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.72 E-value=2.8e-16 Score=156.19 Aligned_cols=201 Identities=16% Similarity=0.188 Sum_probs=140.2
Q ss_pred ccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 177 LLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
...|.++|+|... ++++|++...+.+..++.. +..++.++|+||+|+|||++++++++++. ..++++++
T Consensus 8 ~~~w~~kyrP~~~----~~~~~~~~~~~~l~~~~~~---~~~~~~lll~G~~G~GKT~la~~l~~~~~----~~~~~i~~ 76 (316)
T PHA02544 8 EFMWEQKYRPSTI----DECILPAADKETFKSIVKK---GRIPNMLLHSPSPGTGKTTVAKALCNEVG----AEVLFVNG 76 (316)
T ss_pred CCcceeccCCCcH----HHhcCcHHHHHHHHHHHhc---CCCCeEEEeeCcCCCCHHHHHHHHHHHhC----ccceEecc
Confidence 4489999999888 9999999999999999863 33456666799999999999999999864 45677877
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccc-cccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 257 NSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDAL-ESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 257 ~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l-~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
... . ...+... +.++ .......+...+|||||+|.+ ....+..|..+++.. ...+.+|
T Consensus 77 ~~~-~-~~~i~~~---------------l~~~-~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~---~~~~~~I 135 (316)
T PHA02544 77 SDC-R-IDFVRNR---------------LTRF-ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY---SKNCSFI 135 (316)
T ss_pred Ccc-c-HHHHHHH---------------HHHH-HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc---CCCceEE
Confidence 652 2 1111110 1111 111111134569999999999 444567777766643 2345566
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-----CCCCCCCHHHHHHHHHHHHHhhCCHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-----DKFNMFNASALQLLAGKVAAVSGDIRK 410 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-----~~~~~~~~~~i~~i~~~i~~~~Gd~r~ 410 (490)
+++|. ...+.+.+++||. .+.|..++.++...++...+... .....++++++..+++ ...||+|.
T Consensus 136 lt~n~---~~~l~~~l~sR~~----~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~---~~~~d~r~ 205 (316)
T PHA02544 136 ITANN---KNGIIEPLRSRCR----VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVK---KNFPDFRR 205 (316)
T ss_pred EEcCC---hhhchHHHHhhce----EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---hcCCCHHH
Confidence 66763 3567889999996 79999999988876655432221 1245678999999987 67789999
Q ss_pred HHHHHHHHH
Q psy200 411 AIDITNHLI 419 (490)
Q Consensus 411 ai~ll~~a~ 419 (490)
+++.++...
T Consensus 206 ~l~~l~~~~ 214 (316)
T PHA02544 206 TINELQRYA 214 (316)
T ss_pred HHHHHHHHH
Confidence 998887553
No 90
>KOG0731|consensus
Probab=99.72 E-value=3e-16 Score=165.06 Aligned_cols=224 Identities=17% Similarity=0.177 Sum_probs=160.0
Q ss_pred CCCCChHHHHHHHHHHHHhh--------hccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGH--------VNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~--------~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
.+++|.++..++|.+++.-. +....++++||+||||||||.||+++|.+. +++|+.++++++
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----gVPF~svSGSEF------ 380 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSVSGSEF------ 380 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----CCceeeechHHH------
Confidence 78999999988888876532 123477899999999999999999999984 488988866543
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC------------HHHHHHhH-hCC-CCCCCc
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK------------QTILYTIF-EWP-SIPGSK 331 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~------------~~~L~~l~-~~~-~~~~~~ 331 (490)
++ ...+.....+++.|..+.. ..|++|||||||.+...+ ...|.+++ ++. ......
T Consensus 381 vE--------~~~g~~asrvr~lf~~ar~--~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 381 VE--------MFVGVGASRVRDLFPLARK--NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred HH--------HhcccchHHHHHHHHHhhc--cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 22 1223345667777775554 679999999999986543 12344443 332 334577
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHH-
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRK- 410 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~- 410 (490)
+|++++||+.|..+. .+. |.+.....|.++.++..+..+|+..++.... ...++..+..++. .+.|....
T Consensus 451 vi~~a~tnr~d~ld~---all-rpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~--~~~e~~dl~~~a~---~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDP---ALL-RPGRFDRQIQIDLPDVKGRASILKVHLRKKK--LDDEDVDLSKLAS---LTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCH---Hhc-CCCccccceeccCCchhhhHHHHHHHhhccC--CCcchhhHHHHHh---cCCCCcHHH
Confidence 999999997765443 333 3333336899999999999999999887652 2124444444555 55565443
Q ss_pred HHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCc
Q psy200 411 AIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 411 ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~ 451 (490)
+.|+|..|..+|.+++ ...|+..|+..|+..+....
T Consensus 522 l~n~~neaa~~a~r~~-----~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 522 LANLCNEAALLAARKG-----LREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred HHhhhhHHHHHHHHhc-----cCccchhhHHHHHHHHhccc
Confidence 3479999999999988 77999999999999766543
No 91
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=4.5e-16 Score=159.86 Aligned_cols=241 Identities=15% Similarity=0.263 Sum_probs=156.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
.+.++|||++|+|||+|++++++++.. .+..++|+++ ..+...+...+... .. +.+...+ ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~-~~~~v~yi~~------~~f~~~~~~~l~~~----~~----~~f~~~~---~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE-SGGKILYVRS------ELFTEHLVSAIRSG----EM----QRFRQFY---RN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEeeH------HHHHHHHHHHHhcc----hH----HHHHHHc---cc
Confidence 468999999999999999999998853 3467788853 34444554444321 11 1222222 23
Q ss_pred eEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHH
Q psy200 299 SILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEII 376 (490)
Q Consensus 299 ~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il 376 (490)
.-+|+|||+|.+... .++.++.+++.....+.. +++++.........+.+++.+||.++ ..+.+.+++.+++..||
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~-IIlts~~~p~~l~~l~~rL~SR~~~G-l~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKL-IVISSTCAPQDLKAMEERLISRFEWG-IAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCc-EEEecCCCHHHHhhhHHHHHhhhcCC-eEEecCCCCHHHHHHHH
Confidence 459999999999754 467777776533323333 34333332333345678999999654 47999999999999999
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH---HHHhcccc--------------C-CcccccCHH
Q psy200 377 SQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLID---LTYDNVKE--------------N-GEVTGIGLK 438 (490)
Q Consensus 377 ~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~---~a~~~~~~--------------~-~~~~~It~~ 438 (490)
++++... ...+++++++.|+. ...+|+|.+++.+...+. .+...+.. . .....|+++
T Consensus 281 ~~k~~~~--~~~l~~evl~~la~---~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~t~~ 355 (445)
T PRK12422 281 ERKAEAL--SIRIEETALDFLIE---ALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEAAESVRLTPS 355 (445)
T ss_pred HHHHHHc--CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhcccCCCCCHH
Confidence 9999876 46789999999997 788999999987777642 22111100 0 001247777
Q ss_pred HHHHHHHHhccCccccccccccCCCChHhHHHH---HHHHHHhcCCCCCCcccC
Q psy200 439 EVLGVISSVYCTSQSLHCSKDEDSFPLQQKLAL---ASLLLLKSRPNVKDVTLG 489 (490)
Q Consensus 439 ~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL---~al~~~~~~~~~~~~~~g 489 (490)
.|.+++.+.++-.. +.+.+-...+..++ .||+++.+..+.+...||
T Consensus 356 ~I~~~Va~~~~v~~-----~dl~s~~R~~~i~~~Rqiamyl~r~~t~~s~~~IG 404 (445)
T PRK12422 356 KIIRAVAQYYGVSP-----ESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIG 404 (445)
T ss_pred HHHHHHHHHhCCCH-----HHHhcCCCCcccccHHHHHHHHHHHhcCCCHHHHH
Confidence 77777777766444 33333334433333 467777666666666665
No 92
>KOG0736|consensus
Probab=99.72 E-value=2.2e-16 Score=163.07 Aligned_cols=227 Identities=14% Similarity=0.220 Sum_probs=150.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc-----C---CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN-----E---TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~-----~---~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
+++-|.++.+.+|.+-+.--++. . +-.+|+||||||||||.+|++||.++. ..|+.|.+++.-+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs----L~FlSVKGPELLN---- 743 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS----LNFLSVKGPELLN---- 743 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce----eeEEeecCHHHHH----
Confidence 88999999999998877653221 1 345899999999999999999999975 5666665544321
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------------HHHHHHhHhCCCCCCCc
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------------QTILYTIFEWPSIPGSK 331 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------------~~~L~~l~~~~~~~~~~ 331 (490)
.+.|++++++++.|+++.. ..|||||+||+|.+...+ ...|..+-.+.......
T Consensus 744 ----------MYVGqSE~NVR~VFerAR~--A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 744 ----------MYVGQSEENVREVFERARS--AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred ----------HHhcchHHHHHHHHHHhhc--cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 5678899999999998876 569999999999998663 12333333333335678
Q ss_pred EEEEEecCCCChhHhhhHHhh--hccCCCCeeEEeCCCCHHHHHH-HHHHHHhccCCCCCCC-HHHHHHHHHHHHH-hhC
Q psy200 332 LVLVGVANALDLTDRMLPRLQ--ANVTLQPTLMNFAPYSREQILE-IISQKLKQTDKFNMFN-ASALQLLAGKVAA-VSG 406 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~--~R~~~~~~~i~~~pls~~e~~~-il~~~l~~~~~~~~~~-~~~i~~i~~~i~~-~~G 406 (490)
|.|||+||+.|+.+. .+. .||+ +.+++.+-..++.+. +|+..-++. .++ +-.+..|+++... .+|
T Consensus 812 VFViGATNRPDLLDp---ALLRPGRFD---KLvyvG~~~d~esk~~vL~AlTrkF----kLdedVdL~eiAk~cp~~~TG 881 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDP---ALLRPGRFD---KLVYVGPNEDAESKLRVLEALTRKF----KLDEDVDLVEIAKKCPPNMTG 881 (953)
T ss_pred eEEEecCCCccccCh---hhcCCCccc---eeEEecCCccHHHHHHHHHHHHHHc----cCCCCcCHHHHHhhCCcCCch
Confidence 999999998776554 333 2555 678888777665544 333333322 122 2336666663211 112
Q ss_pred CHHHHHHHHHHHHHHHHhccc------------cCCcccccCHHHHHHHHHHhccCcc
Q psy200 407 DIRKAIDITNHLIDLTYDNVK------------ENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 407 d~r~ai~ll~~a~~~a~~~~~------------~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
..+-.+|..|+..|..+.- .+.+.-.|+++||.++++++.++..
T Consensus 882 --ADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 882 --ADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 1223467777666644311 1123457999999999999987765
No 93
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.71 E-value=5.9e-16 Score=170.00 Aligned_cols=228 Identities=17% Similarity=0.191 Sum_probs=156.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.+..++.|.+.+...+. ...+++++||||||||||++|++++++++ +.++.+.++.+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~----~~fi~v~~~~l----- 523 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG----ANFIAVRGPEI----- 523 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC----CCEEEEehHHH-----
Confidence 7789999999999887764332 13567899999999999999999999875 56777765533
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC---------HHHHHHhHhCC--CCCCCcEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK---------QTILYTIFEWP--SIPGSKLV 333 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~---------~~~L~~l~~~~--~~~~~~vi 333 (490)
...+.|.+...+...|..+.. ..++||||||+|.+.... ...+..++... .....+++
T Consensus 524 ---------~~~~vGese~~i~~~f~~A~~--~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 524 ---------LSKWVGESEKAIREIFRKARQ--AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ---------hhcccCcHHHHHHHHHHHHHh--cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 124566777777777776655 458999999999986432 12333333221 12456899
Q ss_pred EEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
||++||+. +.+++.+.+ ||. ..+.|++++.++..+|++..+.... .-++..++.+++...+++| ..+
T Consensus 593 vI~aTn~~---~~ld~allRpgRfd---~~i~v~~Pd~~~R~~i~~~~~~~~~---~~~~~~l~~la~~t~g~sg--adi 661 (733)
T TIGR01243 593 VIAATNRP---DILDPALLRPGRFD---RLILVPPPDEEARKEIFKIHTRSMP---LAEDVDLEELAEMTEGYTG--ADI 661 (733)
T ss_pred EEEeCCCh---hhCCHhhcCCCccc---eEEEeCCcCHHHHHHHHHHHhcCCC---CCccCCHHHHHHHcCCCCH--HHH
Confidence 99999954 556666664 787 5899999999999999987765541 1133347777773333332 223
Q ss_pred HHHHHHHHHHHHhccccC-------------CcccccCHHHHHHHHHHhccCcc
Q psy200 412 IDITNHLIDLTYDNVKEN-------------GEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~-------------~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
-++|+.|...|..+.... .....|+.+||..|+..+.++..
T Consensus 662 ~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 662 EAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred HHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 346777776665532100 11347999999999998876544
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.71 E-value=1e-15 Score=144.75 Aligned_cols=205 Identities=16% Similarity=0.244 Sum_probs=140.8
Q ss_pred CCCC-Ch-HHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHH
Q psy200 194 CELP-GR-EVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 194 ~~lv-gr-e~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
++|+ |. +..+..+..+... .....+++|+|++|+|||++++++++++. ..+..+++++|.....
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~---~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~~~~~i~~~~~~~---------- 83 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAG---PVADRFFYLWGEAGSGRSHLLQALVADAS-YGGRNARYLDAASPLL---------- 83 (227)
T ss_pred cccccCCcHHHHHHHHHHHhc---cCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEehHHhHH----------
Confidence 4444 43 4444555555431 24567899999999999999999999864 2345777887654310
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHh
Q psy200 272 ELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRL 351 (490)
Q Consensus 272 ~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l 351 (490)
.+ ... ....+|||||+|.+....+..|+.+++.....+..++++ +++.......+.+.+
T Consensus 84 ----------------~~-~~~---~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~-~~~~~~~~~~l~~~L 142 (227)
T PRK08903 84 ----------------AF-DFD---PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLV-AGPAAPLALPLREDL 142 (227)
T ss_pred ----------------HH-hhc---ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEE-eCCCCHHhCCCCHHH
Confidence 00 011 123489999999998777888888876433222223333 333222222345677
Q ss_pred hhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCc
Q psy200 352 QANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGE 431 (490)
Q Consensus 352 ~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~ 431 (490)
.+|+... ..+.++|++.++...++.+.+... ...+++++++.|++ .+.||++.+.++++.....+...+
T Consensus 143 ~sr~~~~-~~i~l~pl~~~~~~~~l~~~~~~~--~v~l~~~al~~L~~---~~~gn~~~l~~~l~~l~~~~~~~~----- 211 (227)
T PRK08903 143 RTRLGWG-LVYELKPLSDADKIAALKAAAAER--GLQLADEVPDYLLT---HFRRDMPSLMALLDALDRYSLEQK----- 211 (227)
T ss_pred HHHHhcC-eEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHhC-----
Confidence 7787322 379999999999888988877665 46789999999998 799999999999998665554444
Q ss_pred ccccCHHHHHHHHH
Q psy200 432 VTGIGLKEVLGVIS 445 (490)
Q Consensus 432 ~~~It~~~v~~a~~ 445 (490)
..||...+.+++.
T Consensus 212 -~~i~~~~~~~~l~ 224 (227)
T PRK08903 212 -RPVTLPLLREMLA 224 (227)
T ss_pred -CCCCHHHHHHHHh
Confidence 4899999999875
No 95
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.71 E-value=1.5e-15 Score=156.65 Aligned_cols=172 Identities=17% Similarity=0.277 Sum_probs=115.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhc----CCceEEEEeccCCC
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIK----DAFKTIYINCNSVR 260 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~----~~~~~~~v~~~~~~ 260 (490)
+++.|.+.+++++.+.+...+. -..+++++||||||||||++++++++++... ......++++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 6789999999999998754221 1356789999999999999999999998522 0122333333221
Q ss_pred CHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCH---------HHHHHhHhCC-C-C
Q psy200 261 NAASVYETIVNELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQ---------TILYTIFEWP-S-I 327 (490)
Q Consensus 261 ~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~---------~~L~~l~~~~-~-~ 327 (490)
.+ ...+.+.....+...|..+.. ..++++||||||+|.++..+. ..+..++... . .
T Consensus 261 ---eL--------l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 261 ---EL--------LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ---hh--------cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 11 113344455555555554432 235799999999999975421 1233333221 1 1
Q ss_pred CCCcEEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhcc
Q psy200 328 PGSKLVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQT 383 (490)
Q Consensus 328 ~~~~vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~ 383 (490)
...++++|++||+ .+.+++.+.+ ||. ..|.|++++.++..+||..++...
T Consensus 330 ~~~~ViVI~ATN~---~d~LDpALlRpGRfD---~~I~~~~Pd~e~r~~Il~~~l~~~ 381 (512)
T TIGR03689 330 SLDNVIVIGASNR---EDMIDPAILRPGRLD---VKIRIERPDAEAAADIFSKYLTDS 381 (512)
T ss_pred cCCceEEEeccCC---hhhCCHhhcCccccc---eEEEeCCCCHHHHHHHHHHHhhcc
Confidence 2357999999995 4567788876 887 479999999999999999988653
No 96
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=6.3e-16 Score=170.41 Aligned_cols=224 Identities=13% Similarity=0.150 Sum_probs=152.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
++++||++++.++.+.|.. +...+++|+||||||||++++.+++.+... .+..++.++...+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r----~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------ 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR----RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------ 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhc----CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc------
Confidence 8999999999999888854 556788999999999999999999987522 122344444332210
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc-----CHHHHHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR-----KQTILYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~-----~~~~L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
+..+.|.....+...+.+... .+.++||||||+|.+... .++. .+++ .+....+.+.+||+|+..+
T Consensus 257 ------g~~~~ge~e~~lk~ii~e~~~-~~~~~ILfIDEih~l~~~g~~~~~~d~-~n~L-kp~l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 257 ------GASVKGEFENRLKSVIDEVKA-SPQPIILFIDEAHTLIGAGGQAGQGDA-ANLL-KPALARGELRTIAATTWAE 327 (852)
T ss_pred ------ccccchHHHHHHHHHHHHHHh-cCCCeEEEEeChHHhccCCCccccccH-HHHh-hHHhhCCCeEEEEecCHHH
Confidence 112333344555556655433 256889999999999752 2332 1222 2334567899999998654
Q ss_pred hhH--hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhCC---HHHHHHHH
Q psy200 343 LTD--RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSGD---IRKAIDIT 415 (490)
Q Consensus 343 ~~~--~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~Gd---~r~ai~ll 415 (490)
+.. ..++.|.+||. .|.+.+++.++...||+...... .....++++++..+++....+-++ +.+||+++
T Consensus 328 ~~~~~~~d~AL~rRf~----~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdll 403 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQ----VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLL 403 (852)
T ss_pred HhhhhhccHHHHHhCe----EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHH
Confidence 432 34789999996 79999999999999975544332 134678999999999855555554 66899999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
..|+........ ..++..+++.+.+
T Consensus 404 dea~a~~~~~~~----~~p~~~~~~~~~~ 428 (852)
T TIGR03345 404 DTACARVALSQN----ATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHhcc----CCchhHHHHHHHH
Confidence 999876554321 2355555555444
No 97
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.6e-16 Score=161.86 Aligned_cols=223 Identities=17% Similarity=0.207 Sum_probs=163.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
.++.|.+...+.+.+.+...+. -....++||+||||||||++|+++++++. ..|+.+..+.+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~----~~fi~v~~~~l----- 312 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR----SRFISVKGSEL----- 312 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC----CeEEEeeCHHH-----
Confidence 5677777777777776654432 13566999999999999999999999754 67788866543
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH--------HHHHHhHhCC--CCCCCcEEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ--------TILYTIFEWP--SIPGSKLVL 334 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~--------~~L~~l~~~~--~~~~~~vil 334 (490)
...+.|.+.+.+.+.|..+.. ..++||||||+|.+..... ..+.+++.+. ......|++
T Consensus 313 ---------~sk~vGesek~ir~~F~~A~~--~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 313 ---------LSKWVGESEKNIRELFEKARK--LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ---------hccccchHHHHHHHHHHHHHc--CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 226788899999999998875 5689999999999976532 3444443322 345667899
Q ss_pred EEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHHH
Q psy200 335 VGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRKA 411 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~a 411 (490)
|++||+. +.+++.+.+ ||. ..+.+++++.++..++++.++.... .....+-.++.+++ ...| .-..+
T Consensus 382 i~aTN~p---~~ld~a~lR~gRfd---~~i~v~~pd~~~r~~i~~~~~~~~~-~~~~~~~~~~~l~~---~t~~~sgadi 451 (494)
T COG0464 382 IAATNRP---DDLDPALLRPGRFD---RLIYVPLPDLEERLEIFKIHLRDKK-PPLAEDVDLEELAE---ITEGYSGADI 451 (494)
T ss_pred EecCCCc---cccCHhhcccCccc---eEeecCCCCHHHHHHHHHHHhcccC-CcchhhhhHHHHHH---HhcCCCHHHH
Confidence 9999954 555666666 777 5899999999999999999988642 12234566777776 3333 23344
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
..+|+.|...+..+.. ...|+++|+..|+..+.+.
T Consensus 452 ~~i~~ea~~~~~~~~~----~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 452 AALVREAALEALREAR----RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHHHHHHHHhc----cCCccHHHHHHHHHhcCCC
Confidence 5689999988887762 3479999999999985543
No 98
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=9.5e-16 Score=163.15 Aligned_cols=219 Identities=17% Similarity=0.252 Sum_probs=149.8
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
|.++|+|... ++++|++..++.|..++.. +.-++.+||+||+|+|||++++.+++.+.+.... .-.-.|..+
T Consensus 7 ~~~kyRP~~f----~~viGq~~~~~~L~~~i~~---~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~-~~~~~Cg~C 78 (614)
T PRK14971 7 SARKYRPSTF----ESVVGQEALTTTLKNAIAT---NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT-ADGEACNEC 78 (614)
T ss_pred HHHHHCCCCH----HHhcCcHHHHHHHHHHHHc---CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCCCCcc
Confidence 4457777766 9999999999999998864 3445668999999999999999999987522100 000112222
Q ss_pred CCHHHHHHHH---HHHhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEE
Q psy200 260 RNAASVYETI---VNELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 260 ~~~~~l~~~i---~~~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vil 334 (490)
.+...+-..- +..+.. ....+.+++.+.+.++.. ..+...|+||||+|.|....++.|..+++.+ ....+|
T Consensus 79 ~sC~~~~~~~~~n~~~ld~-~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep---p~~tif 154 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDA-ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP---PSYAIF 154 (614)
T ss_pred hHHHHHhcCCCCceEEecc-cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC---CCCeEE
Confidence 2222111000 000000 011234555555543321 1244669999999999888888888888743 334556
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
|.+++. ...+.+.+++||. .+.|.+++.+++..++...+..+ ...+++++++.|+. ...||+|.++++
T Consensus 155 IL~tt~---~~kIl~tI~SRc~----iv~f~~ls~~ei~~~L~~ia~~e--gi~i~~~al~~La~---~s~gdlr~al~~ 222 (614)
T PRK14971 155 ILATTE---KHKILPTILSRCQ----IFDFNRIQVADIVNHLQYVASKE--GITAEPEALNVIAQ---KADGGMRDALSI 222 (614)
T ss_pred EEEeCC---chhchHHHHhhhh----eeecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHH
Confidence 666652 3677889999996 79999999999999999998887 35689999999987 678999999999
Q ss_pred HHHHHHHH
Q psy200 415 TNHLIDLT 422 (490)
Q Consensus 415 l~~a~~~a 422 (490)
++.....+
T Consensus 223 Lekl~~y~ 230 (614)
T PRK14971 223 FDQVVSFT 230 (614)
T ss_pred HHHHHHhc
Confidence 98876543
No 99
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.4e-15 Score=151.50 Aligned_cols=263 Identities=16% Similarity=0.215 Sum_probs=173.7
Q ss_pred CCCCChHHHHHH--HHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh-hcCCceEEEEeccCCCCHHHHHHHHH
Q psy200 194 CELPGREVQLEG--IRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE-IKDAFKTIYINCNSVRNAASVYETIV 270 (490)
Q Consensus 194 ~~lvgre~~~~~--l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~-~~~~~~~~~v~~~~~~~~~~l~~~i~ 270 (490)
+.++|-...+.. ...+-.. .+...+.++|||+.|.|||+|+++++++.. ...+..++|+ +...++..++
T Consensus 88 nFv~g~~N~~A~aa~~~va~~--~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~------~se~f~~~~v 159 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAEN--PGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL------TSEDFTNDFV 159 (408)
T ss_pred heeeCCchHHHHHHHHHHHhc--cCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec------cHHHHHHHHH
Confidence 556776544432 1222221 223578999999999999999999999875 2344577887 5566666665
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhh
Q psy200 271 NELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTDRML 348 (490)
Q Consensus 271 ~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~ 348 (490)
..+.. ...+++.+. . .--+++|||+|.+.... |+.++++++.....+..+++.+...+.+ ...+.
T Consensus 160 ~a~~~----~~~~~Fk~~----y----~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~-l~~~~ 226 (408)
T COG0593 160 KALRD----NEMEKFKEK----Y----SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE-LNGLE 226 (408)
T ss_pred HHHHh----hhHHHHHHh----h----ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh-hcccc
Confidence 55433 112222222 2 23399999999998764 8888888876655555555543322222 33456
Q ss_pred HHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhcccc
Q psy200 349 PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKE 428 (490)
Q Consensus 349 ~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~ 428 (490)
+++++||.++ ..+.+.|++.+....+|.+++... ...++++++..+++ ....|+|.+...+.+....+...+..
T Consensus 227 ~rL~SR~~~G-l~~~I~~Pd~e~r~aiL~kka~~~--~~~i~~ev~~~la~---~~~~nvReLegaL~~l~~~a~~~~~~ 300 (408)
T COG0593 227 DRLRSRLEWG-LVVEIEPPDDETRLAILRKKAEDR--GIEIPDEVLEFLAK---RLDRNVRELEGALNRLDAFALFTKRA 300 (408)
T ss_pred HHHHHHHhce-eEEeeCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHhcCcc
Confidence 8999999887 579999999999999999988776 57799999999998 77889999888887776666544421
Q ss_pred C--------------CcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHH---HHHHHHhcCCCCCCcccC
Q psy200 429 N--------------GEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLAL---ASLLLLKSRPNVKDVTLG 489 (490)
Q Consensus 429 ~--------------~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL---~al~~~~~~~~~~~~~~g 489 (490)
- .... |++++|.+++.+.++-.. +.+.+-....-.++ .||+++......+...||
T Consensus 301 iTi~~v~e~L~~~~~~~~~-itie~I~~~Va~~y~v~~-----~dl~s~~R~~~i~~~RqiamyL~r~lt~~Slp~IG 372 (408)
T COG0593 301 ITIDLVKEILKDLLRAGEK-ITIEDIQKIVAEYYNVKV-----SDLLSKSRTRNIVRPRQIAMYLARELTNLSLPEIG 372 (408)
T ss_pred CcHHHHHHHHHHhhccccc-CCHHHHHHHHHHHhCCCH-----HHhhccccccccchHHHHHHHHHHHHccCcHHHHH
Confidence 0 1124 888888888888776544 22222222222222 366666666666666655
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.70 E-value=1.9e-15 Score=142.77 Aligned_cols=201 Identities=18% Similarity=0.276 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG 278 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~ 278 (490)
.+..++.+..++. .....+++|+|++|||||++++++++.+.. .+..+++++|.......
T Consensus 22 ~~~~~~~l~~~~~----~~~~~~lll~G~~G~GKT~la~~~~~~~~~-~~~~~~~i~~~~~~~~~--------------- 81 (226)
T TIGR03420 22 NAELLAALRQLAA----GKGDRFLYLWGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAELAQAD--------------- 81 (226)
T ss_pred cHHHHHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEeHHHHHHhH---------------
Confidence 4556666666653 356789999999999999999999988752 34577888877652100
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecC-CCChhHhhhHHhhhcc
Q psy200 279 GKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVAN-ALDLTDRMLPRLQANV 355 (490)
Q Consensus 279 ~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn-~~~~~~~l~~~l~~R~ 355 (490)
..+ + ..+. +..+|||||+|.+.... ++.|+.+++.....+..+++ +++ .........+.+.+|+
T Consensus 82 ----~~~---~-~~~~---~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIi--ts~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 ----PEV---L-EGLE---QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLI--AGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ----HHH---H-hhcc---cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEE--ECCCChHHCCcccHHHHHHH
Confidence 111 1 1122 23499999999998754 77777776532222233333 333 2111111125667776
Q ss_pred CCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCccccc
Q psy200 356 TLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGI 435 (490)
Q Consensus 356 ~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~I 435 (490)
... ..+.++|++.++...++...+... ...+++++++.|++ .+.||++.+.++++.+...+...+ ..|
T Consensus 149 ~~~-~~i~l~~l~~~e~~~~l~~~~~~~--~~~~~~~~l~~L~~---~~~gn~r~L~~~l~~~~~~~~~~~------~~i 216 (226)
T TIGR03420 149 AWG-LVFQLPPLSDEEKIAALQSRAARR--GLQLPDEVADYLLR---HGSRDMGSLMALLDALDRASLAAK------RKI 216 (226)
T ss_pred hcC-eeEecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHhC------CCC
Confidence 321 379999999999999999877654 45689999999998 699999999999999876665555 479
Q ss_pred CHHHHHHHH
Q psy200 436 GLKEVLGVI 444 (490)
Q Consensus 436 t~~~v~~a~ 444 (490)
+.+.+.+++
T Consensus 217 ~~~~~~~~~ 225 (226)
T TIGR03420 217 TIPFVKEVL 225 (226)
T ss_pred CHHHHHHHh
Confidence 999888765
No 101
>KOG0652|consensus
Probab=99.70 E-value=5.5e-16 Score=141.50 Aligned_cols=224 Identities=13% Similarity=0.203 Sum_probs=152.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
.++-|.++++++|.+.+.-.+. -.+++++++|||||||||.+|++++.+-. ..|+.+.++
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~----aTFLKLAgP------- 239 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN----ATFLKLAGP------- 239 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc----chHHHhcch-------
Confidence 6899999999999887653321 23788999999999999999999987632 222322222
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~ 331 (490)
+|-..+.|...+-+++.|.-+ +...|.||||||+|.+..++ |..++.+++- ......+
T Consensus 240 -------QLVQMfIGdGAkLVRDAFaLA--KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~ 310 (424)
T KOG0652|consen 240 -------QLVQMFIGDGAKLVRDAFALA--KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDR 310 (424)
T ss_pred -------HHHhhhhcchHHHHHHHHHHh--hccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccc
Confidence 112234455666677777643 34679999999999997553 3333333321 2345678
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
+-+|++||+.|+.+. .+.+ -+.-...|.|+-++.+....|++-+-++.+ .-++-..+.+++-.....|- ++
T Consensus 311 vKviAATNRvDiLDP---ALlR-SGRLDRKIEfP~Pne~aRarIlQIHsRKMn---v~~DvNfeELaRsTddFNGA--Qc 381 (424)
T KOG0652|consen 311 VKVIAATNRVDILDP---ALLR-SGRLDRKIEFPHPNEEARARILQIHSRKMN---VSDDVNFEELARSTDDFNGA--QC 381 (424)
T ss_pred eEEEeecccccccCH---HHhh-cccccccccCCCCChHHHHHHHHHhhhhcC---CCCCCCHHHHhhcccccCch--hh
Confidence 999999998876554 3322 122224799999999999999887766542 22344467787733333343 33
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCc
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~ 451 (490)
-.+|-.|.++|.+++ ...|+-++|..++.++....
T Consensus 382 KAVcVEAGMiALRr~-----atev~heDfmegI~eVqakK 416 (424)
T KOG0652|consen 382 KAVCVEAGMIALRRG-----ATEVTHEDFMEGILEVQAKK 416 (424)
T ss_pred eeeehhhhHHHHhcc-----cccccHHHHHHHHHHHHHhh
Confidence 347889999999999 78999999999998876543
No 102
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.70 E-value=2.8e-16 Score=163.21 Aligned_cols=229 Identities=15% Similarity=0.196 Sum_probs=145.1
Q ss_pred ccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccC-CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 177 LLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNE-TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~-~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
..+|.++|.|... ++|+.+++.+++|..||...+... ..+.++|+||+||||||+++.++++++ +.+.++.
T Consensus 6 ~~~W~~ky~P~~~----~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~ 77 (519)
T PF03215_consen 6 SEPWVEKYAPKTL----DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWI 77 (519)
T ss_pred cCccchhcCCCCH----HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEec
Confidence 4489999999999 999999999999999999876544 357888999999999999999999986 6666654
Q ss_pred ccCCCCHHHH----HHHHHHHhcCCCCCCcHHHHHHHHHHHHh----------cCCCeEEEEEecCccccccCHHHHHHh
Q psy200 256 CNSVRNAASV----YETIVNELKLKPGGKSERHQLGAILKYFD----------TKHKSILLILDEIDALESRKQTILYTI 321 (490)
Q Consensus 256 ~~~~~~~~~l----~~~i~~~l~~~~~~~s~~~~~~~l~~~l~----------~~~~~~vI~IDEid~l~~~~~~~L~~l 321 (490)
.+........ +........ .+ ......+.+++...-+ ...++.||+|||+.+++......+..+
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~-~f-~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~ 155 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFD-EF-LSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREA 155 (519)
T ss_pred CCCCccccccccccccccccccc-cc-cchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHH
Confidence 3332110000 000000000 00 0011112222111100 013577999999999988776555554
Q ss_pred Hh-CCCCCCC-cEEEEEecC--CC---Ch------hHhhh-HHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc----
Q psy200 322 FE-WPSIPGS-KLVLVGVAN--AL---DL------TDRML-PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT---- 383 (490)
Q Consensus 322 ~~-~~~~~~~-~vilI~~tn--~~---~~------~~~l~-~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~---- 383 (490)
+. +...... ++|||.+-. .. .. .++++ +.+....+. ..|.|+|....-+.+.|...+..+
T Consensus 156 L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i--~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 156 LRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI--TRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc--eEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 43 3333444 777776621 00 00 11232 345554443 689999999999999999988876
Q ss_pred -CC-CCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy200 384 -DK-FNMFNASALQLLAGKVAAVSGDIRKAIDITNHLID 420 (490)
Q Consensus 384 -~~-~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~ 420 (490)
+. ...-..+.|+.|+. ...||+|.||+.|+-...
T Consensus 234 ~~~~~~p~~~~~l~~I~~---~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAE---SSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHH---hcCchHHHHHHHHHHHhc
Confidence 11 11122345888876 567999999999987765
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=99.69 E-value=2.4e-15 Score=142.31 Aligned_cols=187 Identities=15% Similarity=0.244 Sum_probs=132.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
...++|+|++|+|||+|++++++++.. .+..++|+++.. +... .. .+.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~-~~~~v~y~~~~~------~~~~-------------~~----~~~~~~~~--- 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ-RGEPAVYLPLAE------LLDR-------------GP----ELLDNLEQ--- 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEeeHHH------HHhh-------------hH----HHHHhhhh---
Confidence 468999999999999999999988752 245677886432 2110 01 12222222
Q ss_pred eEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHH
Q psy200 299 SILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEII 376 (490)
Q Consensus 299 ~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il 376 (490)
.-+|+|||++.+... .++.|+.+++.....+ +.++++++........+.+.+++|+.++ ..+.+.+++.++...++
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~g-l~~~l~~~~~e~~~~il 175 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLA-LVFQMRGLSDEDKLRAL 175 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcC-eeeecCCCCHHHHHHHH
Confidence 238999999988654 3567888887543333 4455555543333333468899999654 36889999999999999
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 377 SQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 377 ~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+.++... ...+++++++.|++ ...||+|.++++++.....+...+ ..||+..+.+++.
T Consensus 176 ~~ka~~~--~~~l~~ev~~~L~~---~~~~d~r~l~~~l~~l~~~~l~~~------~~it~~~~~~~L~ 233 (234)
T PRK05642 176 QLRASRR--GLHLTDEVGHFILT---RGTRSMSALFDLLERLDQASLQAQ------RKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHc--CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHcC------CcCCHHHHHHHhc
Confidence 9777654 36789999999998 889999999999888865444433 4799999888764
No 104
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.68 E-value=3.3e-15 Score=165.48 Aligned_cols=206 Identities=20% Similarity=0.210 Sum_probs=143.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
+.++||+++++++.++|.. ...++++|+||||||||++++.++..+... .+..++.++...+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r----~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a------ 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGR----RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA------ 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcc----cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc------
Confidence 7899999999999999964 456688999999999999999999987521 134566665432210
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH----HHHHHhHhCCCCCCCcEEEEEecCCCCh
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ----TILYTIFEWPSIPGSKLVLVGVANALDL 343 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~----~~L~~l~~~~~~~~~~vilI~~tn~~~~ 343 (490)
+..+.|...+.+...+.++.. .+++||||||+|.+...+. ..+.+++. +......+.+||+|+..++
T Consensus 249 ------g~~~~ge~e~rl~~i~~~~~~--~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk-p~l~rg~l~~IgaTt~~ey 319 (821)
T CHL00095 249 ------GTKYRGEFEERLKRIFDEIQE--NNNIILVIDEVHTLIGAGAAEGAIDAANILK-PALARGELQCIGATTLDEY 319 (821)
T ss_pred ------cCCCccHHHHHHHHHHHHHHh--cCCeEEEEecHHHHhcCCCCCCcccHHHHhH-HHHhCCCcEEEEeCCHHHH
Confidence 223444445555555555433 3578999999999976431 01122222 2334567999999986554
Q ss_pred hHh--hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhCC---HHHHHHHHH
Q psy200 344 TDR--MLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSGD---IRKAIDITN 416 (490)
Q Consensus 344 ~~~--l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~Gd---~r~ai~ll~ 416 (490)
... .++.+.+||. .+.+..++.++...+++...... .....++++++..++....++-++ +..+|++++
T Consensus 320 ~~~ie~D~aL~rRf~----~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld 395 (821)
T CHL00095 320 RKHIEKDPALERRFQ----PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLD 395 (821)
T ss_pred HHHHhcCHHHHhcce----EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHH
Confidence 332 3678899996 78999999999988887644322 123458999999998866666666 788999998
Q ss_pred HHHHHH
Q psy200 417 HLIDLT 422 (490)
Q Consensus 417 ~a~~~a 422 (490)
.|....
T Consensus 396 ~a~a~~ 401 (821)
T CHL00095 396 EAGSRV 401 (821)
T ss_pred HHHHHH
Confidence 887544
No 105
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.68 E-value=2.7e-15 Score=145.74 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=124.0
Q ss_pred CCCCChHHHHHHHHHHHHhhh----ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV----NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~----~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
..+.....-++++...+.... .-..+.+++||||||||||.++++++++++ ..++.+++.++.
T Consensus 119 g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg----~~~i~vsa~eL~--------- 185 (413)
T PLN00020 119 GGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMG----IEPIVMSAGELE--------- 185 (413)
T ss_pred CccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC----CCeEEEEHHHhh---------
Confidence 334444444444443333222 235778999999999999999999999986 667888766543
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHh---cCCCeEEEEEecCccccccC---------H---HHHHHhHh----------C
Q psy200 270 VNELKLKPGGKSERHQLGAILKYFD---TKHKSILLILDEIDALESRK---------Q---TILYTIFE----------W 324 (490)
Q Consensus 270 ~~~l~~~~~~~s~~~~~~~l~~~l~---~~~~~~vI~IDEid~l~~~~---------~---~~L~~l~~----------~ 324 (490)
..+.|++++.+++.|..+.. ..++|+||||||||.+.... + ..|..+++ |
T Consensus 186 -----sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w 260 (413)
T PLN00020 186 -----SENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDW 260 (413)
T ss_pred -----cCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccc
Confidence 37888999999999988764 35789999999999997652 1 12233332 1
Q ss_pred -CCCCCCcEEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q psy200 325 -PSIPGSKLVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAG 399 (490)
Q Consensus 325 -~~~~~~~vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~ 399 (490)
......++.||++||+ ++.+++.|.+ ||. .. |..++.++..+|++.++... .++...+..|++
T Consensus 261 ~~~~~~~~V~VIaTTNr---pd~LDpALlRpGRfD---k~--i~lPd~e~R~eIL~~~~r~~----~l~~~dv~~Lv~ 326 (413)
T PLN00020 261 REKEEIPRVPIIVTGND---FSTLYAPLIRDGRME---KF--YWAPTREDRIGVVHGIFRDD----GVSREDVVKLVD 326 (413)
T ss_pred cccccCCCceEEEeCCC---cccCCHhHcCCCCCC---ce--eCCCCHHHHHHHHHHHhccC----CCCHHHHHHHHH
Confidence 1234567999999995 4556777776 776 22 45789999999999888764 356777888877
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.67 E-value=4e-15 Score=161.07 Aligned_cols=240 Identities=17% Similarity=0.171 Sum_probs=157.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~ 272 (490)
+.++||+++++++.+.|.. ....+++|+||||||||++++.++..+.. .+.+....+|.-+. +...++ .
T Consensus 186 ~~liGR~~ei~~~i~iL~r----~~~~n~LLvGppGvGKT~lae~la~~i~~-~~vP~~l~~~~~~~l~~~~ll----a- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQ-GDVPEVMADCTIYSLDIGSLL----A- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHh-cCCCchhcCCeEEeccHHHHh----c-
Confidence 7899999999999998875 45678899999999999999999987642 22222222222111 111111 0
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----HHHHHHhHhCCCCCCCcEEEEEecCCCChh--H
Q psy200 273 LKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----QTILYTIFEWPSIPGSKLVLVGVANALDLT--D 345 (490)
Q Consensus 273 l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----~~~L~~l~~~~~~~~~~vilI~~tn~~~~~--~ 345 (490)
+..+.|.....+...+..+.. ..+.||||||||.+...+ +.-+.+++. +......+.+||+||..++. .
T Consensus 256 -G~~~~Ge~e~rl~~l~~~l~~--~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLk-p~L~~g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 -GTKYRGDFEKRFKALLKQLEQ--DTNSILFIDEIHTIIGAGAASGGQVDAANLIK-PLLSSGKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred -ccchhhhHHHHHHHHHHHHHh--cCCCEEEeccHHHHhccCCCCCcHHHHHHHHH-HHHhCCCeEEEecCChHHHHHHh
Confidence 122333334444444443332 346799999999995432 222323322 12245689999999965542 2
Q ss_pred hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHH
Q psy200 346 RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSG---DIRKAIDITNHLID 420 (490)
Q Consensus 346 ~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~G---d~r~ai~ll~~a~~ 420 (490)
..++.+.+||. .+.+++++.++...||+...... .....+++++++.+++....+-. -+.+++++|+.|..
T Consensus 332 ~~D~AL~rRFq----~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 332 EKDRALARRFQ----KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred hccHHHHhhCc----EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHH
Confidence 34788999996 79999999999999998765443 24577899999988764433332 25689999999986
Q ss_pred HHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 421 LTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 421 ~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
........ .....|+.++|.++++...+-+.
T Consensus 408 ~~~~~~~~-~~~~~v~~~~i~~v~~~~tgip~ 438 (758)
T PRK11034 408 RARLMPVS-KRKKTVNVADIESVVARIARIPE 438 (758)
T ss_pred hhccCccc-ccccccChhhHHHHHHHHhCCCh
Confidence 54321100 01346899999999998877655
No 107
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.67 E-value=3.9e-15 Score=139.32 Aligned_cols=182 Identities=20% Similarity=0.334 Sum_probs=126.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEI-KDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
....++|||++|+|||+|++++++++.. .++..++|++ ..+|...+...+.. ....++ .+.+..
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~----~~~~~~----~~~~~~- 97 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD----GEIEEF----KDRLRS- 97 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT----TSHHHH----HHHHCT-
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc----ccchhh----hhhhhc-
Confidence 3467999999999999999999998863 3567889994 45566665555533 112222 222332
Q ss_pred CCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 297 HKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
.-+|+|||+|.+.... |+.|+.+++.....+.++++.+.....++ ..+.+++.+|+..+. .+.+.+++.++...
T Consensus 98 --~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l-~~~~~~L~SRl~~Gl-~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 98 --ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL-SGLLPDLRSRLSWGL-VVELQPPDDEDRRR 173 (219)
T ss_dssp --SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT-TTS-HHHHHHHHCSE-EEEE----HHHHHH
T ss_pred --CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc-cccChhhhhhHhhcc-hhhcCCCCHHHHHH
Confidence 3499999999998764 78888887765445556555443333333 346788999997663 69999999999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy200 375 IISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTY 423 (490)
Q Consensus 375 il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~ 423 (490)
++++++... ...+++++++.|++ ...+|+|.+..++.+....+.
T Consensus 174 il~~~a~~~--~~~l~~~v~~~l~~---~~~~~~r~L~~~l~~l~~~~~ 217 (219)
T PF00308_consen 174 ILQKKAKER--GIELPEEVIEYLAR---RFRRDVRELEGALNRLDAYAQ 217 (219)
T ss_dssp HHHHHHHHT--T--S-HHHHHHHHH---HTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCcHHHHHHHHH---hhcCCHHHHHHHHHHHHHHhh
Confidence 999999886 45699999999998 778899999988888766553
No 108
>KOG0727|consensus
Probab=99.67 E-value=1.2e-15 Score=138.67 Aligned_cols=222 Identities=18% Similarity=0.166 Sum_probs=147.0
Q ss_pred CCCCChHHHHHHHHHHHHhh---------hccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGH---------VNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~---------~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
.++-|.+-+.+++++.++-. +.-.+++++++|||||||||+|+++++++-. ..|+.+.++.
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~----a~firvvgse------ 224 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT----AAFIRVVGSE------ 224 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc----hheeeeccHH------
Confidence 46677777777777665432 2234789999999999999999999998743 5667775543
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCC--CCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWP--SIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~--~~~~~~ 331 (490)
|.. .+.|+....+++.|.-+.. +.|.||||||+|.+..++ |..|..+++-. .....+
T Consensus 225 fvq--------kylgegprmvrdvfrlake--napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n 294 (408)
T KOG0727|consen 225 FVQ--------KYLGEGPRMVRDVFRLAKE--NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN 294 (408)
T ss_pred HHH--------HHhccCcHHHHHHHHHHhc--cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc
Confidence 222 3455677778888875444 668999999999997553 44555554322 345678
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHH-HHHHHHhhCCHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLL-AGKVAAVSGDIRK 410 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i-~~~i~~~~Gd~r~ 410 (490)
+-+|++||+.|- ++|.+.+ -+.-...|.|+-++..+-+-++.....+.+.. ++-.++.+ ++ -...+ ...
T Consensus 295 vkvimatnradt---ldpallr-pgrldrkiefplpdrrqkrlvf~titskm~ls---~~vdle~~v~r-pdkis--~ad 364 (408)
T KOG0727|consen 295 VKVIMATNRADT---LDPALLR-PGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS---DEVDLEDLVAR-PDKIS--GAD 364 (408)
T ss_pred eEEEEecCcccc---cCHhhcC-CccccccccCCCCchhhhhhhHHhhhhcccCC---cccCHHHHhcC-ccccc--hhh
Confidence 999999997653 3444432 22222479999888888777777666554211 22223333 32 11111 122
Q ss_pred HHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 411 AIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 411 ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
+-.+|+.|.+.|.+.. .-.|...+|+++.......
T Consensus 365 i~aicqeagm~avr~n-----ryvvl~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 365 INAICQEAGMLAVREN-----RYVVLQKDFEKAYKTVVKK 399 (408)
T ss_pred HHHHHHHHhHHHHHhc-----ceeeeHHHHHHHHHhhcCC
Confidence 3348999999999888 6689999999999876643
No 109
>KOG2228|consensus
Probab=99.66 E-value=1.4e-14 Score=137.22 Aligned_cols=267 Identities=16% Similarity=0.257 Sum_probs=188.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh-hcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE-IKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~-~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
-.|+|..++...+.+++++.+..+..+.++|.||.|+|||+++........ ...++-.+.+|+.-.. .+-.+..|..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~-dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQT-DKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchh-hHHHHHHHHHH
Confidence 679999999999999999999899999999999999999999988877632 2356677777766554 44456666666
Q ss_pred hcCC-----CCCCcHHHHHHHHHHHHhcC----CCeEEEEEecCcccccc-CHHHHHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 273 LKLK-----PGGKSERHQLGAILKYFDTK----HKSILLILDEIDALESR-KQTILYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 273 l~~~-----~~~~s~~~~~~~l~~~l~~~----~~~~vI~IDEid~l~~~-~~~~L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
+... ....+..+...++..+++.+ +.+++.|+||||.+... +|-.|+++|+..+....++++||.|++.|
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 5321 11123444555555556543 45788888999998655 78899999999888889999999999999
Q ss_pred hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH---H----HHH
Q psy200 343 LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA---I----DIT 415 (490)
Q Consensus 343 ~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a---i----~ll 415 (490)
..+.+..++++||... .++-+++++-++..+++++.+.-- ..+.+ .++.+.+.+...-.|.|.+ + .++
T Consensus 183 ~lE~LEKRVKSRFshr-~I~m~~~~~l~~yv~l~r~ll~v~---~e~~~-~~~~wn~~~~~~L~d~~sl~k~l~~~~~~l 257 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHR-VIFMLPSLPLGDYVDLYRKLLSVP---AEFSD-FAEKWNRSVQEVLSDHRSLSKNLRSLHDLL 257 (408)
T ss_pred HHHHHHHHHHhhcccc-eeeccCCCChHHHHHHHHHHhcCC---ccCcc-HHHHHHhhhhHhhcchhhHHHHHHHhhHHH
Confidence 9999999999999842 234455667889999999877432 22233 3444433222222333332 2 223
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLL 476 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~ 476 (490)
..++..-... .+-+|.++++.+-..+..+.. .+.+.+|+.-...++.++..
T Consensus 258 ~~~l~~~vas------~p~~ta~~~~~v~~~ys~d~K----ie~l~gLSvLEL~LII~~~r 308 (408)
T KOG2228|consen 258 KNALNRLVAS------HPLMTAEDLAEVSRQYSVDPK----IELLSGLSVLELYLIICMKR 308 (408)
T ss_pred Hhhhhhhhcc------CcchhHHHHHHHHHHhccChH----HHHhcCchHHHHHHHHHHHH
Confidence 3232221111 256889999998888887776 68889999888888877775
No 110
>PRK06620 hypothetical protein; Validated
Probab=99.66 E-value=5.8e-15 Score=137.48 Aligned_cols=194 Identities=14% Similarity=0.169 Sum_probs=127.8
Q ss_pred CCCCChHH--HHHHHHHHHHhhhccCC-CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHH
Q psy200 194 CELPGREV--QLEGIRQFLLGHVNNET-SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIV 270 (490)
Q Consensus 194 ~~lvgre~--~~~~l~~~L~~~~~~~~-~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~ 270 (490)
+.++|... .+..+..+...+ ..++ .+.++||||+|+|||+|++++++... . .++.....
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~-~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~----~--~~~~~~~~----------- 78 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGF-GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN----A--YIIKDIFF----------- 78 (214)
T ss_pred hhEecccHHHHHHHHHHHHHcc-ccCCCcceEEEECCCCCCHHHHHHHHHhccC----C--EEcchhhh-----------
Confidence 45666523 444444444321 1112 26799999999999999999877642 1 12210000
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHH
Q psy200 271 NELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPR 350 (490)
Q Consensus 271 ~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~ 350 (490)
.. +.+. ...+|+|||||.+ .+..|+.+++.....+. .++++++....... + ++
T Consensus 79 -----------~~-------~~~~---~~d~lliDdi~~~---~~~~lf~l~N~~~e~g~-~ilits~~~p~~l~-l-~~ 131 (214)
T PRK06620 79 -----------NE-------EILE---KYNAFIIEDIENW---QEPALLHIFNIINEKQK-YLLLTSSDKSRNFT-L-PD 131 (214)
T ss_pred -----------ch-------hHHh---cCCEEEEeccccc---hHHHHHHHHHHHHhcCC-EEEEEcCCCccccc-h-HH
Confidence 00 1111 1248999999965 23567777665443443 55555554332222 4 88
Q ss_pred hhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCC
Q psy200 351 LQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENG 430 (490)
Q Consensus 351 l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~ 430 (490)
+++|+..+ ..+.+.+++.+++..++++.+... ...+++++++.|++ ...||+|.++++++.....+...+
T Consensus 132 L~SRl~~g-l~~~l~~pd~~~~~~~l~k~~~~~--~l~l~~ev~~~L~~---~~~~d~r~l~~~l~~l~~~~~~~~---- 201 (214)
T PRK06620 132 LSSRIKSV-LSILLNSPDDELIKILIFKHFSIS--SVTISRQIIDFLLV---NLPREYSKIIEILENINYFALISK---- 201 (214)
T ss_pred HHHHHhCC-ceEeeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HccCCHHHHHHHHHHHHHHHHHcC----
Confidence 99998754 369999999999999999888754 46689999999998 789999999999988654444433
Q ss_pred cccccCHHHHHHHH
Q psy200 431 EVTGIGLKEVLGVI 444 (490)
Q Consensus 431 ~~~~It~~~v~~a~ 444 (490)
..||.+.+.+++
T Consensus 202 --~~it~~~~~~~l 213 (214)
T PRK06620 202 --RKITISLVKEVL 213 (214)
T ss_pred --CCCCHHHHHHHh
Confidence 469999988875
No 111
>KOG0740|consensus
Probab=99.66 E-value=3.2e-15 Score=148.79 Aligned_cols=228 Identities=18% Similarity=0.208 Sum_probs=159.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
+++.|.+.....+.+.+-..+. ....+.+|+.||||+|||+|+++||.+.. ..|+.+..+++
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~----atff~iSassL------ 222 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG----ATFFNISASSL------ 222 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhc----ceEeeccHHHh------
Confidence 7889988887777775543322 23668999999999999999999999864 55666654443
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC------------HHHHHHhHhCCCCCCCcEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK------------QTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~------------~~~L~~l~~~~~~~~~~vi 333 (490)
...+.|.++..++..|. +++..+|.||||||+|.++... .+.|.++.........+|+
T Consensus 223 --------tsK~~Ge~eK~vralf~--vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvl 292 (428)
T KOG0740|consen 223 --------TSKYVGESEKLVRALFK--VARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVL 292 (428)
T ss_pred --------hhhccChHHHHHHHHHH--HHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEE
Confidence 23677777555555554 3344679999999999997553 1233333333344567999
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRKAI 412 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai 412 (490)
|||+|| .++.++..+++||. .++.++.++.+....++.+.+... ...+.+..++.|++...++.| |+..
T Consensus 293 vigaTN---~P~e~Dea~~Rrf~---kr~yiplPd~etr~~~~~~ll~~~--~~~l~~~d~~~l~~~Tegysgsdi~~-- 362 (428)
T KOG0740|consen 293 VIGATN---RPWELDEAARRRFV---KRLYIPLPDYETRSLLWKQLLKEQ--PNGLSDLDISLLAKVTEGYSGSDITA-- 362 (428)
T ss_pred EEecCC---CchHHHHHHHHHhh---ceeeecCCCHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCcccccHHH--
Confidence 999999 56778888888887 578899999999999999988876 456788889999986666554 4443
Q ss_pred HHHHHHHHHHH--hccc------cCCcccccCHHHHHHHHHHhccCcc
Q psy200 413 DITNHLIDLTY--DNVK------ENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 413 ~ll~~a~~~a~--~~~~------~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+|+.|...-. ..+. .......|+..++..++..+.....
T Consensus 363 -l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 363 -LCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred -HHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccC
Confidence 4444432111 1110 0012567999999999998877655
No 112
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.65 E-value=1.1e-14 Score=164.00 Aligned_cols=214 Identities=11% Similarity=0.088 Sum_probs=135.9
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHH--HHH-HH--------------HHHHhcCC---
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA--SVY-ET--------------IVNELKLK--- 276 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~--~l~-~~--------------i~~~l~~~--- 276 (490)
..+++|||+||||||||.||+++|.+.. ++++.+++....... ... .. +..++...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~----VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY----VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC----CceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 4678999999999999999999999854 788888765543110 000 00 00000000
Q ss_pred -------CCCCcHHH--HHHHHHHHHhcCCCeEEEEEecCccccccCH-----HHHHHhHhCCC--CCCCcEEEEEecCC
Q psy200 277 -------PGGKSERH--QLGAILKYFDTKHKSILLILDEIDALESRKQ-----TILYTIFEWPS--IPGSKLVLVGVANA 340 (490)
Q Consensus 277 -------~~~~s~~~--~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~-----~~L~~l~~~~~--~~~~~vilI~~tn~ 340 (490)
..+.++.. +...|..+.+ ..||||+|||||.+..... ..|...++-.. .....|+|||+||+
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelARk--~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELAKA--MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHI 1781 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHHH--CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCC
Confidence 01112222 4455555444 5699999999999986632 23333333211 23457999999995
Q ss_pred CChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCC-HHHHHHHHHH
Q psy200 341 LDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGD-IRKAIDITNH 417 (490)
Q Consensus 341 ~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd-~r~ai~ll~~ 417 (490)
++.+++++.+ ||+ ..|.+..++..+..+++...+...+....-+...++.+|+ .+.|- .+.+-++|..
T Consensus 1782 ---PD~LDPALLRPGRFD---R~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~---~T~GfSGADLanLvNE 1852 (2281)
T CHL00206 1782 ---PQKVDPALIAPNKLN---TCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGS---ITMGSNARDLVALTNE 1852 (2281)
T ss_pred ---cccCCHhHcCCCCCC---eEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHH---hCCCCCHHHHHHHHHH
Confidence 4566777775 776 5899998887777776654322211111111123667776 44553 4556679999
Q ss_pred HHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 418 LIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 418 a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
|+.+|..++ ...|+.+++..|+......
T Consensus 1853 AaliAirq~-----ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1853 ALSISITQK-----KSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHcC-----CCccCHHHHHHHHHHHHhh
Confidence 999999998 6789999999999987654
No 113
>PRK09087 hypothetical protein; Validated
Probab=99.64 E-value=1.8e-14 Score=135.39 Aligned_cols=189 Identities=15% Similarity=0.161 Sum_probs=132.9
Q ss_pred HHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q psy200 209 FLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGA 288 (490)
Q Consensus 209 ~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~ 288 (490)
++..+. ....+.++|+|++|+|||||++++++.. ...|++.... ...
T Consensus 35 ~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~------~~~~i~~~~~--------------------------~~~ 81 (226)
T PRK09087 35 LVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS------DALLIHPNEI--------------------------GSD 81 (226)
T ss_pred HHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc------CCEEecHHHc--------------------------chH
Confidence 454432 2335569999999999999999988764 2235532211 111
Q ss_pred HHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCC
Q psy200 289 ILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYS 368 (490)
Q Consensus 289 l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls 368 (490)
+...+.. -+|+|||+|.+. ..++.|+++++.....+ ..++++++..........+.+++|+..+ ..+.+.+++
T Consensus 82 ~~~~~~~----~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~g-l~~~l~~pd 154 (226)
T PRK09087 82 AANAAAE----GPVLIEDIDAGG-FDETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAA-TVVEIGEPD 154 (226)
T ss_pred HHHhhhc----CeEEEECCCCCC-CCHHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCC-ceeecCCCC
Confidence 1111211 288899999874 45777888887554444 3455544433323333468899998654 379999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 369 REQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 369 ~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
.+++..++++++... ...+++++++.|++ ...|+++.++.++.+....+...+ ..||...+.+++..+.
T Consensus 155 ~e~~~~iL~~~~~~~--~~~l~~ev~~~La~---~~~r~~~~l~~~l~~L~~~~~~~~------~~it~~~~~~~l~~~~ 223 (226)
T PRK09087 155 DALLSQVIFKLFADR--QLYVDPHVVYYLVS---RMERSLFAAQTIVDRLDRLALERK------SRITRALAAEVLNEMG 223 (226)
T ss_pred HHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHhC------CCCCHHHHHHHHHhhc
Confidence 999999999999875 46799999999998 778999999998888766666555 4799999999998753
No 114
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.64 E-value=1.4e-14 Score=155.94 Aligned_cols=220 Identities=12% Similarity=0.151 Sum_probs=150.9
Q ss_pred CCCCChHHHHHHHHHHHHhhh--------ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV--------NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~--------~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
.++.|.+..++++.+.+.... ....+++++|+||+|+|||+++++++.++. ..++.+++..+..
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~----~~f~~is~~~~~~---- 223 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK----VPFFTISGSDFVE---- 223 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC----CCEEEEehHHhHH----
Confidence 567888877777776654321 112356799999999999999999999865 5677776654311
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHh-CC-CCCCCcE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFE-WP-SIPGSKL 332 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~-~~-~~~~~~v 332 (490)
.+.+.....+.+.|..+.. ..|+||||||+|.+.... ...+..++. +. ......+
T Consensus 224 ----------~~~g~~~~~~~~~f~~a~~--~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 224 ----------MFVGVGASRVRDMFEQAKK--AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred ----------hhhcccHHHHHHHHHHHHh--cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1223445566666665543 468999999999995431 123333332 21 2345679
Q ss_pred EEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHH
Q psy200 333 VLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIR 409 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r 409 (490)
++|++||+ ++.+++++.+ ||. ..+.|..++.++..+|+..++...... .+..+..+++ .+.| ...
T Consensus 292 ivIaaTN~---p~~lD~Al~RpgRfd---r~i~v~~Pd~~~R~~Il~~~~~~~~l~---~~~d~~~la~---~t~G~sga 359 (644)
T PRK10733 292 IVIAATNR---PDVLDPALLRPGRFD---RQVVVGLPDVRGREQILKVHMRRVPLA---PDIDAAIIAR---GTPGFSGA 359 (644)
T ss_pred eEEEecCC---hhhcCHHHhCCcccc---eEEEcCCCCHHHHHHHHHHHhhcCCCC---CcCCHHHHHh---hCCCCCHH
Confidence 99999995 4566666664 676 589999999999999999988765211 1223455665 4455 345
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
.+-++|..|...|.+.+ ...|+.+++..|+..+...
T Consensus 360 dl~~l~~eAa~~a~r~~-----~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 360 DLANLVNEAALFAARGN-----KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHHHHHHHHcC-----CCcccHHHHHHHHHHHhcc
Confidence 55578889998888877 6789999999999987643
No 115
>KOG0737|consensus
Probab=99.64 E-value=1.1e-14 Score=140.11 Aligned_cols=200 Identities=15% Similarity=0.211 Sum_probs=132.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhc----------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN----------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA 263 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~----------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~ 263 (490)
+++-|.+..++.+.+.+.--+. -.++.+|||+||||||||++|++++++.+ ..++-+..+.+.+
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag----a~fInv~~s~lt~-- 165 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG----ANFINVSVSNLTS-- 165 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC----CCcceeeccccch--
Confidence 7899999999998886542221 12678999999999999999999999965 5566676666544
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC----HHHHH----Hh-HhCC---CCCCCc
Q psy200 264 SVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK----QTILY----TI-FEWP---SIPGSK 331 (490)
Q Consensus 264 ~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~----~~~L~----~l-~~~~---~~~~~~ 331 (490)
.|.|.+.+-+...|.-+ ..-.|++|||||+|.+...+ .++.. ++ +.|. ...+.+
T Consensus 166 ------------KWfgE~eKlv~AvFslA--sKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~r 231 (386)
T KOG0737|consen 166 ------------KWFGEAQKLVKAVFSLA--SKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSER 231 (386)
T ss_pred ------------hhHHHHHHHHHHHHhhh--hhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCce
Confidence 23334444444433322 23569999999999997443 12111 12 2343 345668
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
|+|+|+||+. ..++.++.+|+. .++++.-++..+..+||+-.+..+... ++-.+..++....+++|. .+
T Consensus 232 VlVlgATNRP---~DlDeAiiRR~p---~rf~V~lP~~~qR~kILkviLk~e~~e---~~vD~~~iA~~t~GySGS--DL 300 (386)
T KOG0737|consen 232 VLVLGATNRP---FDLDEAIIRRLP---RRFHVGLPDAEQRRKILKVILKKEKLE---DDVDLDEIAQMTEGYSGS--DL 300 (386)
T ss_pred EEEEeCCCCC---ccHHHHHHHhCc---ceeeeCCCchhhHHHHHHHHhcccccC---cccCHHHHHHhcCCCcHH--HH
Confidence 9999999964 334455556665 478888888999999999999887433 333466777744455553 44
Q ss_pred HHHHHHHHHHHHh
Q psy200 412 IDITNHLIDLTYD 424 (490)
Q Consensus 412 i~ll~~a~~~a~~ 424 (490)
.++|..|.....+
T Consensus 301 kelC~~Aa~~~ir 313 (386)
T KOG0737|consen 301 KELCRLAALRPIR 313 (386)
T ss_pred HHHHHHHhHhHHH
Confidence 5577776655443
No 116
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.63 E-value=3.4e-14 Score=135.47 Aligned_cols=133 Identities=18% Similarity=0.224 Sum_probs=100.0
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCC---------CChhHhhhHHhhhccCCCCeeEEeCCCCH
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANA---------LDLTDRMLPRLQANVTLQPTLMNFAPYSR 369 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~---------~~~~~~l~~~l~~R~~~~~~~i~~~pls~ 369 (490)
|-||||||+|.|.-.....|.+.++.. -++ ++|.+||+ ..-+.-+-..+.+|+- +|...||+.
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse---~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRll----II~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESE---LAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLL----IISTRPYSR 363 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcc---cCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhee----EEecCCCCH
Confidence 569999999999766555666555522 223 44555662 1112222334555653 899999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 370 EQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 370 ~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
+|+++||+.++..+ ...+++++++.++. .+..-.+|+++++|.-|..+|..++ ...|..+||.+|..-+.
T Consensus 364 ~EireIi~iRa~ee--~i~l~~~Ale~L~~--ig~etSLRYa~qLL~pa~iiA~~rg-----~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 364 EEIREIIRIRAKEE--DIELSDDALEYLTD--IGEETSLRYAVQLLTPASIIAKRRG-----SKRVEVEDVERAKELFL 433 (450)
T ss_pred HHHHHHHHHhhhhh--ccccCHHHHHHHHh--hchhhhHHHHHHhccHHHHHHHHhC-----CCeeehhHHHHHHHHHh
Confidence 99999999999887 67899999999987 4455689999999999999999998 67899999999876543
No 117
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8e-15 Score=151.87 Aligned_cols=224 Identities=16% Similarity=0.186 Sum_probs=159.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
.++.|.++.+++|.+.+.-... ..-+++++++||||||||.||++++.+. ++++++++.+.+
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----~VPFf~iSGS~F------ 219 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----GVPFFSISGSDF------ 219 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----CCCceeccchhh------
Confidence 7899998888888776654321 2357899999999999999999999885 478888865543
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhH-hCC-CCCCCcE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIF-EWP-SIPGSKL 332 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~-~~~-~~~~~~v 332 (490)
.+ -+.|.....+++.|.++.+ ..||||||||+|.+...+ ...|.+++ +.. ...+..|
T Consensus 220 Ve--------mfVGvGAsRVRdLF~qAkk--~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 220 VE--------MFVGVGASRVRDLFEQAKK--NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred hh--------hhcCCCcHHHHHHHHHhhc--cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 11 3456677888899988876 458999999999997553 12344443 222 2345789
Q ss_pred EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCH-HHH
Q psy200 333 VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDI-RKA 411 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~-r~a 411 (490)
+++++||+.|..+..+-+- .||. ..+.++.++-....+|++-++........++ +..|++ .+.|-. ..+
T Consensus 290 iviaaTNRpdVlD~ALlRp-gRFD---RqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd---l~~iAr---~tpGfsGAdL 359 (596)
T COG0465 290 IVIAATNRPDVLDPALLRP-GRFD---RQILVELPDIKGREQILKVHAKNKPLAEDVD---LKKIAR---GTPGFSGADL 359 (596)
T ss_pred EEEecCCCcccchHhhcCC-CCcc---eeeecCCcchhhHHHHHHHHhhcCCCCCcCC---HHHHhh---hCCCcccchH
Confidence 9999999887665433221 1444 5899999999999999997776652222222 444776 444432 234
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
.|++..|..+|.+.+ ...|++.+|.+|+..+.....
T Consensus 360 ~nl~NEAal~aar~n-----~~~i~~~~i~ea~drv~~G~e 395 (596)
T COG0465 360 ANLLNEAALLAARRN-----KKEITMRDIEEAIDRVIAGPE 395 (596)
T ss_pred hhhHHHHHHHHHHhc-----CeeEeccchHHHHHHHhcCcC
Confidence 578889998998888 678999999999999875544
No 118
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.63 E-value=3.4e-14 Score=135.39 Aligned_cols=234 Identities=13% Similarity=0.133 Sum_probs=156.9
Q ss_pred CCCCChHHH---HHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhh-----cCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQ---LEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEI-----KDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~---~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~-----~~~~~~~~v~~~~~~~~~~l 265 (490)
+..+|.... ++.|.+.+.. -......+++|+|++|.|||++++.+.+.... ...++++++.++...+...|
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~-P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEY-PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhC-CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 566666444 4444444442 13346789999999999999999999886641 12358999999999999999
Q ss_pred HHHHHHHhcCCCC-CCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc---CHHHHHHhHh-CCCCCCCcEEEEEecCC
Q psy200 266 YETIVNELKLKPG-GKSERHQLGAILKYFDTKHKSILLILDEIDALESR---KQTILYTIFE-WPSIPGSKLVLVGVANA 340 (490)
Q Consensus 266 ~~~i~~~l~~~~~-~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~---~~~~L~~l~~-~~~~~~~~vilI~~tn~ 340 (490)
|..|+..|+.+.. ..+...........++. -+.-+|||||+|++... .|..+.+++. +...-...++.+|+...
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~-~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRR-LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHH-cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 9999999998763 34455555555555554 33569999999998544 2444444332 33444556666665532
Q ss_pred CChhHhhhHHhhhccCCCCeeEEeCCCCHH-HHHHHHHHHHhcc---CCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy200 341 LDLTDRMLPRLQANVTLQPTLMNFAPYSRE-QILEIISQKLKQT---DKFNMFNASALQLLAGKVAAVSGDIRKAIDITN 416 (490)
Q Consensus 341 ~~~~~~l~~~l~~R~~~~~~~i~~~pls~~-e~~~il~~~l~~~---~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~ 416 (490)
.... +-++++.+||. .+.++++..+ +...++...-... ......+++....|.. .+.|.+-.+..++.
T Consensus 192 ~~al-~~D~QLa~RF~----~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~---~s~G~iG~l~~ll~ 263 (302)
T PF05621_consen 192 YRAL-RTDPQLASRFE----PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHE---RSEGLIGELSRLLN 263 (302)
T ss_pred HHHh-ccCHHHHhccC----CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH---HcCCchHHHHHHHH
Confidence 2211 12689999997 6888998855 4555554332222 1122234454556654 56688888889999
Q ss_pred HHHHHHHhccccCCcccccCHHHHHH
Q psy200 417 HLIDLTYDNVKENGEVTGIGLKEVLG 442 (490)
Q Consensus 417 ~a~~~a~~~~~~~~~~~~It~~~v~~ 442 (490)
.|...|...| ...||.+.+..
T Consensus 264 ~aA~~AI~sG-----~E~It~~~l~~ 284 (302)
T PF05621_consen 264 AAAIAAIRSG-----EERITREILDK 284 (302)
T ss_pred HHHHHHHhcC-----CceecHHHHhh
Confidence 9999999999 67899888876
No 119
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.62 E-value=5e-14 Score=150.62 Aligned_cols=233 Identities=18% Similarity=0.267 Sum_probs=153.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCC-CHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVR-NAASVY 266 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~-~~~~l~ 266 (490)
++++|++..+..+...+. .....+++|+||+||||||+|+.+++..... .+..++.++|.... +...+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia----~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA----SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred HhceeCcHHHHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 789999999988766653 3456789999999999999999998766321 23468889987653 222222
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHH---------HHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC-----------
Q psy200 267 ETIVNELKLKPGGKSERHQLGAILK---------YFDTKHKSILLILDEIDALESRKQTILYTIFEWPS----------- 326 (490)
Q Consensus 267 ~~i~~~l~~~~~~~s~~~~~~~l~~---------~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~----------- 326 (490)
..++..+ ...........+.. .+... ..-+|||||++.|....|..|..+++...
T Consensus 230 ~~llg~~----~~~~~~~a~~~l~~~gl~~~~~g~v~~a-sgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 230 NPLLGSV----HDPIYQGARRDLAETGVPEPKTGLVTDA-HGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHhcCCc----cHHHHHHHHHHHHHcCCCchhcCchhhc-CCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 2221110 00000001111110 01110 12299999999999888888887775321
Q ss_pred --------------CCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHH
Q psy200 327 --------------IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNAS 392 (490)
Q Consensus 327 --------------~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~ 392 (490)
.....+++|++|+.. ...+.+.+++||. .+.|.|++.++++.|+.+.+... ...++++
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~--~~~l~~aLrSR~~----~i~~~pls~edi~~Il~~~a~~~--~v~ls~e 376 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRD--PEEINPALRSRCA----EVFFEPLTPEDIALIVLNAAEKI--NVHLAAG 376 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEecccc--ccccCHHHHhcee----EEEeCCCCHHHHHHHHHHHHHHc--CCCCCHH
Confidence 123457888777542 2356778899986 78999999999999999998865 3457899
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccc---cCCcccccCHHHHHHHHHHh
Q psy200 393 ALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVK---ENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 393 ~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~---~~~~~~~It~~~v~~a~~~~ 447 (490)
+++.|++ ++++.|.++++|..+...+..... +......|+.+++.+++..-
T Consensus 377 al~~L~~----ys~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 377 VEELIAR----YTIEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHH----CCCcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999986 566789999988888655422210 00113479999999998753
No 120
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=4e-14 Score=155.65 Aligned_cols=225 Identities=18% Similarity=0.245 Sum_probs=147.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.+++++.|.+++...+.. ..+.+++|+||||||||++++++++++. ..++.+++..+.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~----~~~i~i~~~~i~~--- 250 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG----AYFISINGPEIMS--- 250 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC----CeEEEEecHHHhc---
Confidence 67999999999999988643221 3567899999999999999999999875 5677787654321
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCCCCCCCcEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~~~~~~~vi 333 (490)
.+.+.+...+...|..+.. ..+.||||||+|.+.... +..|..+++-. .....++
T Consensus 251 -----------~~~g~~~~~l~~lf~~a~~--~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l-~~~~~vi 316 (733)
T TIGR01243 251 -----------KYYGESEERLREIFKEAEE--NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL-KGRGRVI 316 (733)
T ss_pred -----------ccccHHHHHHHHHHHHHHh--cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc-ccCCCEE
Confidence 2334455566666665544 457899999999986542 12344444322 2356789
Q ss_pred EEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
+|+++|.. +.+++.+.+ ||. ..+.|..++.++..+|++..+... ....+..++.+++ ...|-...-
T Consensus 317 vI~atn~~---~~ld~al~r~gRfd---~~i~i~~P~~~~R~~Il~~~~~~~---~l~~d~~l~~la~---~t~G~~gad 384 (733)
T TIGR01243 317 VIGATNRP---DALDPALRRPGRFD---REIVIRVPDKRARKEILKVHTRNM---PLAEDVDLDKLAE---VTHGFVGAD 384 (733)
T ss_pred EEeecCCh---hhcCHHHhCchhcc---EEEEeCCcCHHHHHHHHHHHhcCC---CCccccCHHHHHH---hCCCCCHHH
Confidence 99999854 445566654 665 479999999999999999766543 1123444677776 333433222
Q ss_pred H-HHHHHHHHHHHhcccc----C----------CcccccCHHHHHHHHHHhccCc
Q psy200 412 I-DITNHLIDLTYDNVKE----N----------GEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 412 i-~ll~~a~~~a~~~~~~----~----------~~~~~It~~~v~~a~~~~~~~~ 451 (490)
+ .+++.|...+..+... . .....|+.+++..|+..+.+..
T Consensus 385 l~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 385 LAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc
Confidence 2 3555555444332100 0 1134688999999999877654
No 121
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=2.5e-14 Score=158.92 Aligned_cols=208 Identities=16% Similarity=0.155 Sum_probs=145.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
+.++||++++.++.+.|.. ...++++|+||||+|||++++.++..+... .+..++.++......
T Consensus 173 ~~~igr~~ei~~~~~~l~r----~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a------ 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA------ 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh------
Confidence 7899999999999998864 556788899999999999999999987421 134555554322100
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC----HHHHHHhHhCCCCCCCcEEEEEecCCCCh
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK----QTILYTIFEWPSIPGSKLVLVGVANALDL 343 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~----~~~L~~l~~~~~~~~~~vilI~~tn~~~~ 343 (490)
+..+.|.....+...+.++.. .++++||||||+|.|...+ ..-..+++ .+......+.+||+|+..++
T Consensus 243 ------~~~~~g~~e~~l~~~l~~~~~-~~~~~ILfIDEih~l~~~g~~~~~~d~~~~L-k~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 243 ------GAKYRGEFEERLKAVLNEVTK-SEGQIILFIDELHTLVGAGKAEGAMDAGNML-KPALARGELHCIGATTLDEY 314 (852)
T ss_pred ------cchhhhhHHHHHHHHHHHHHh-cCCCeEEEeccHHHhhcCCCCcchhHHHHHh-chhhhcCceEEEEeCcHHHH
Confidence 112333334445555554333 2468999999999997421 11122333 23345678999999986554
Q ss_pred hH--hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhCC---HHHHHHHHH
Q psy200 344 TD--RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSGD---IRKAIDITN 416 (490)
Q Consensus 344 ~~--~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~Gd---~r~ai~ll~ 416 (490)
.. ..++.+.+||. .+.+..++.++...||....... .....+.++++..++.....+-.| +.+||++++
T Consensus 315 r~~~~~d~al~rRf~----~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld 390 (852)
T TIGR03346 315 RKYIEKDAALERRFQ----PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLID 390 (852)
T ss_pred HHHhhcCHHHHhcCC----EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHH
Confidence 22 34789999996 68999999999999988765553 234567899999888766666666 889999999
Q ss_pred HHHHHHH
Q psy200 417 HLIDLTY 423 (490)
Q Consensus 417 ~a~~~a~ 423 (490)
.|+..+.
T Consensus 391 ~a~a~~~ 397 (852)
T TIGR03346 391 EAAARIR 397 (852)
T ss_pred HHHHHHH
Confidence 9886554
No 122
>KOG0990|consensus
Probab=99.61 E-value=1.6e-14 Score=136.15 Aligned_cols=238 Identities=19% Similarity=0.177 Sum_probs=163.5
Q ss_pred CCccccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc--e
Q psy200 173 SPRKLLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF--K 250 (490)
Q Consensus 173 ~p~~~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~--~ 250 (490)
++..+.+|.++|.+... .+++++++.+..+.++.. .....++|+|||||+|||+.+.+.+..+....++ .
T Consensus 24 ~~~~~~pwvekyrP~~l----~dv~~~~ei~st~~~~~~----~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m 95 (360)
T KOG0990|consen 24 SPQYPQPWVEKYRPPFL----GIVIKQEPIWSTENRYSG----MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSM 95 (360)
T ss_pred CcccCCCCccCCCCchh----hhHhcCCchhhHHHHhcc----CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhH
Confidence 34556699999999999 999999999988888853 3556699999999999999999999987532211 1
Q ss_pred EEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHH-HHHHHH-----HHhcCCCeEEEEEecCccccccCHHHHHHhHhC
Q psy200 251 TIYINCNSVRNAASVYETIVNELKLKPGGKSERHQ-LGAILK-----YFDTKHKSILLILDEIDALESRKQTILYTIFEW 324 (490)
Q Consensus 251 ~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~-~~~l~~-----~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~ 324 (490)
+..+|.+... |...... ...+.. .+.......+||+||+|.+....|.+|++.++.
T Consensus 96 ~lelnaSd~r------------------gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek 157 (360)
T KOG0990|consen 96 LLELNASDDR------------------GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK 157 (360)
T ss_pred HHHhhccCcc------------------CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH
Confidence 2223322221 1111111 111111 111122467999999999999999999997664
Q ss_pred CCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHh
Q psy200 325 PSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAV 404 (490)
Q Consensus 325 ~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~ 404 (490)
. ..+.+|++| +| .+..+.+.+++||. .+.|.|++..+....+.+.+..+ ....+++....+++ ..
T Consensus 158 ~-t~n~rF~ii--~n---~~~ki~pa~qsRct----rfrf~pl~~~~~~~r~shi~e~e--~~~~~~~~~~a~~r---~s 222 (360)
T KOG0990|consen 158 Y-TANTRFATI--SN---PPQKIHPAQQSRCT----RFRFAPLTMAQQTERQSHIRESE--QKETNPEGYSALGR---LS 222 (360)
T ss_pred h-ccceEEEEe--cc---ChhhcCchhhcccc----cCCCCCCChhhhhhHHHHHHhcc--hhhcCHHHHHHHHH---Hh
Confidence 3 345555554 54 46777899999996 89999999999999999999887 56678877777666 78
Q ss_pred hCCHHHHHHHHHHHHHHHHhccccCC--------cccccCHHHHHHHHHHhccCcc
Q psy200 405 SGDIRKAIDITNHLIDLTYDNVKENG--------EVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 405 ~Gd~r~ai~ll~~a~~~a~~~~~~~~--------~~~~It~~~v~~a~~~~~~~~~ 452 (490)
.||+|.+++.|+....... ...+.. -.......++...+..+....+
T Consensus 223 ~gDmr~a~n~Lqs~~~~~~-~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~ 277 (360)
T KOG0990|consen 223 VGDMRVALNYLQSILKKVM-ERKELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGED 277 (360)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCCCCchhhHHHhcCCCChhHHHHHHHHHhcCch
Confidence 8999999999887654332 221110 0112334477777776665544
No 123
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=5.3e-14 Score=140.19 Aligned_cols=200 Identities=14% Similarity=0.195 Sum_probs=135.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCC--c-eE-EEEeccCCCCHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDA--F-KT-IYINCNSVRNAASVYETI 269 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~--~-~~-~~v~~~~~~~~~~l~~~i 269 (490)
..++|+++..+.|...+.. +..++.++|+||+|+|||++++.+++.+..... . .. ....|... ..+..+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~---grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c----~~c~~i 95 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYRE---GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS----PVWRQI 95 (351)
T ss_pred hhccCcHHHHHHHHHHHHc---CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC----HHHHHH
Confidence 7899999999999988864 345567999999999999999999999864221 1 11 11122121 122222
Q ss_pred HHH-------hcCC--------CCCCcHHHHHHHHHHHHh---cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCc
Q psy200 270 VNE-------LKLK--------PGGKSERHQLGAILKYFD---TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSK 331 (490)
Q Consensus 270 ~~~-------l~~~--------~~~~s~~~~~~~l~~~l~---~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~ 331 (490)
... +..+ ....+.+++++. .+.+. ..++..||||||+|.|....++.|+..++.+. .+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l-~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp---~~ 171 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRV-GHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP---AR 171 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHH-HHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC---CC
Confidence 111 1100 012335555533 33332 13567799999999999888888888887532 23
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
.++|.+++. ..++++.+++||. .+.|.|++.+++.++|.+..... .++++++..+++ ...|+++.+
T Consensus 172 ~~fiLit~~---~~~llptIrSRc~----~i~l~pl~~~~~~~~L~~~~~~~----~~~~~~~~~i~~---~s~G~pr~A 237 (351)
T PRK09112 172 ALFILISHS---SGRLLPTIRSRCQ----PISLKPLDDDELKKALSHLGSSQ----GSDGEITEALLQ---RSKGSVRKA 237 (351)
T ss_pred ceEEEEECC---hhhccHHHHhhcc----EEEecCCCHHHHHHHHHHhhccc----CCCHHHHHHHHH---HcCCCHHHH
Confidence 444444442 4577899999995 89999999999999999843222 277888888876 778999999
Q ss_pred HHHHHHH
Q psy200 412 IDITNHL 418 (490)
Q Consensus 412 i~ll~~a 418 (490)
+++++..
T Consensus 238 l~ll~~~ 244 (351)
T PRK09112 238 LLLLNYG 244 (351)
T ss_pred HHHHhcC
Confidence 9987543
No 124
>KOG0726|consensus
Probab=99.60 E-value=1.1e-14 Score=134.95 Aligned_cols=222 Identities=15% Similarity=0.175 Sum_probs=146.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
.++-|.+.+++++.+.++-.+. -.++++++|||+||||||.||+++++.- ...
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT------------------SAT 246 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT------------------SAT 246 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc------------------chh
Confidence 6889999999999997764432 2377899999999999999999999863 233
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~ 331 (490)
|++-+..+|-..+.|....-+++.|.-+-. ..|.|+||||||.+...+ |..++.+++- .......
T Consensus 247 FlRvvGseLiQkylGdGpklvRqlF~vA~e--~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD 324 (440)
T KOG0726|consen 247 FLRVVGSELIQKYLGDGPKLVRELFRVAEE--HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD 324 (440)
T ss_pred hhhhhhHHHHHHHhccchHHHHHHHHHHHh--cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC
Confidence 344444444446666777777777765443 568999999999997553 3333344332 1335678
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
+-+|.+||..+ .++|.+.+ -+.-...|.|+-++...-++||.-+-.+.... .+-.++.+...-...+|- .+
T Consensus 325 vKvimATnrie---~LDPaLiR-PGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~---~dVnle~li~~kddlSGA--dI 395 (440)
T KOG0726|consen 325 VKVIMATNRIE---TLDPALIR-PGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA---EDVNLEELIMTKDDLSGA--DI 395 (440)
T ss_pred eEEEEeccccc---ccCHhhcC-CCccccccccCCCchhhhceeEEEeecccchh---ccccHHHHhhcccccccc--cH
Confidence 89999999764 34444432 23222579999999888887776543332111 112233332211122221 22
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
-.+|-.|..+|.++. .-.|+++||.+|...++-
T Consensus 396 kAictEaGllAlRer-----Rm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 396 KAICTEAGLLALRER-----RMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred HHHHHHHhHHHHHHH-----HhhccHHHHHHHHHHHHH
Confidence 347999999998887 668999999999998763
No 125
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=4.2e-14 Score=156.57 Aligned_cols=184 Identities=17% Similarity=0.190 Sum_probs=125.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
+.++||+++++++.+.|.. ...++++|+||||||||++++.++..+... .++.+++++......
T Consensus 178 ~~vigr~~ei~~~i~iL~r----~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a------ 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA------ 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhc----CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh------
Confidence 8899999999999998864 556788999999999999999999987421 145666665443211
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC----HHHHHHhHhCCCCCCCcEEEEEecCCCCh
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK----QTILYTIFEWPSIPGSKLVLVGVANALDL 343 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~----~~~L~~l~~~~~~~~~~vilI~~tn~~~~ 343 (490)
+..+.|.....+...|.+... .++++||||||+|.+.+.+ ..-..+++ .+....+.+.+||+|+..++
T Consensus 248 ------g~~~~g~~e~~lk~~~~~~~~-~~~~~ILfIDEih~l~~~~~~~~~~d~~~~l-kp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 ------GAKYRGEFEERLKGVLNDLAK-QEGNVILFIDELHTMVGAGKADGAMDAGNML-KPALARGELHCVGATTLDEY 319 (857)
T ss_pred ------ccchhhhhHHHHHHHHHHHHH-cCCCeEEEEecHHHhccCCCCccchhHHHHh-cchhhcCCCeEEEcCCCHHH
Confidence 112333444455555554433 2568899999999997552 00112222 34456778999999997665
Q ss_pred h--HhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHH
Q psy200 344 T--DRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAG 399 (490)
Q Consensus 344 ~--~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~ 399 (490)
. -.+++.+.+||. .|.+..++.++...+|+...... .....++++++..++.
T Consensus 320 r~~~~~d~al~rRf~----~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ 375 (857)
T PRK10865 320 RQYIEKDAALERRFQ----KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAT 375 (857)
T ss_pred HHHhhhcHHHHhhCC----EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHH
Confidence 2 234788999996 68888889999999987665443 1234566666665543
No 126
>KOG0729|consensus
Probab=99.58 E-value=2.1e-14 Score=131.67 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=147.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
.++-|.+++++.|++.++--+. -.+++++++|||||+|||.+|+++++. .+.+|+.+-++ +
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr----tdacfirvigs------e 246 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR----TDACFIRVIGS------E 246 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc----cCceEEeehhH------H
Confidence 7889999999999998765432 237889999999999999999999987 44677777332 2
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHh-C-CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFE-W-PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~-~-~~~~~~~ 331 (490)
++ ..+.|+....+++.|+-+. ..+.|+||+||||.+.+.+ |..++.++. + ......+
T Consensus 247 lv--------qkyvgegarmvrelf~mar--tkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgn 316 (435)
T KOG0729|consen 247 LV--------QKYVGEGARMVRELFEMAR--TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGN 316 (435)
T ss_pred HH--------HHHhhhhHHHHHHHHHHhc--ccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCC
Confidence 22 2445566666777776443 3678999999999986542 333334332 2 2456788
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
+-++.+||+.+. +++.+.+ -+.-...+.|.-++.+-...||+-+......+ .+--.++|+++.-...| ..+
T Consensus 317 ikvlmatnrpdt---ldpallr-pgrldrkvef~lpdlegrt~i~kihaksmsve---rdir~ellarlcpnstg--aei 387 (435)
T KOG0729|consen 317 IKVLMATNRPDT---LDPALLR-PGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE---RDIRFELLARLCPNSTG--AEI 387 (435)
T ss_pred eEEEeecCCCCC---cCHhhcC-CcccccceeccCCcccccceeEEEeccccccc---cchhHHHHHhhCCCCcc--hHH
Confidence 999999997643 3444432 22222468888888887777776544332111 12234556552223333 122
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
-.+|-.|.+.|.+.. ....|..+|..|++++...
T Consensus 388 rsvcteagmfairar-----rk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 388 RSVCTEAGMFAIRAR-----RKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred HHHHHHhhHHHHHHH-----hhhhhHHHHHHHHHHHHHH
Confidence 358889998888776 5688999999999987643
No 127
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.58 E-value=7.3e-14 Score=153.93 Aligned_cols=200 Identities=21% Similarity=0.252 Sum_probs=133.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc--CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN--ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~--~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
++++|.++.++.+.+++...... ..+.+++|+||||||||++++++++.+. ..++.+++....+...+...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~----~~~~~i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN----RKFVRFSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc----CCeEEEeCCCcccHHHHcCC---
Confidence 77999999999999987654322 2445799999999999999999999985 56677776655443332110
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH----HHHHHhHhCCC------------CCCCcEEEE
Q psy200 272 ELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ----TILYTIFEWPS------------IPGSKLVLV 335 (490)
Q Consensus 272 ~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~----~~L~~l~~~~~------------~~~~~vilI 335 (490)
...+.|.....+.+.+..+. ....||||||||.+....+ ++|..+++... ..-++++||
T Consensus 393 --~~~~~g~~~g~i~~~l~~~~---~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 --RRTYVGAMPGRIIQGLKKAK---TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred --CCceeCCCCchHHHHHHHhC---cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 11223333444444444332 2233899999999976432 56666654210 122578999
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHh-----ccC---CCCCCCHHHHHHHHHHHHHhhCC
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLK-----QTD---KFNMFNASALQLLAGKVAAVSGD 407 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~-----~~~---~~~~~~~~~i~~i~~~i~~~~Gd 407 (490)
+++|. .+.+.+.+.+||. .|.|.+|+.++...|+..++. ..+ ....++++++..|++... ...+
T Consensus 468 ~TtN~---~~~i~~~L~~R~~----vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~-~e~g 539 (775)
T TIGR00763 468 ATANS---IDTIPRPLLDRME----VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT-REAG 539 (775)
T ss_pred EecCC---chhCCHHHhCCee----EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC-hhcC
Confidence 99995 4567788999995 799999999999999877652 111 134689999999988322 2345
Q ss_pred HHHHHH
Q psy200 408 IRKAID 413 (490)
Q Consensus 408 ~r~ai~ 413 (490)
+|.+-.
T Consensus 540 ~R~l~r 545 (775)
T TIGR00763 540 VRNLER 545 (775)
T ss_pred ChHHHH
Confidence 554443
No 128
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.7e-13 Score=141.84 Aligned_cols=239 Identities=20% Similarity=0.236 Sum_probs=159.1
Q ss_pred hHHHhhcCCCCCCChHHHHHHHHHHHHhhh--ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH
Q psy200 185 KVEEKAKDSCELPGREVQLEGIRQFLLGHV--NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA 262 (490)
Q Consensus 185 ~~~~~~l~~~~lvgre~~~~~l~~~L~~~~--~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~ 262 (490)
..++..|. .+.+|.++..+++.++|.-.. ..-.+..++|+||||+|||+|++.||+.++ .+|+.+.....++.
T Consensus 315 ~~a~~iLd-~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~----RkfvR~sLGGvrDE 389 (782)
T COG0466 315 KKAEKILD-KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG----RKFVRISLGGVRDE 389 (782)
T ss_pred HHHHHHhc-ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC----CCEEEEecCccccH
Confidence 44555666 899999999999999886432 223667899999999999999999999986 67888888888776
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC----HHHHHHhHhCCC------------
Q psy200 263 ASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK----QTILYTIFEWPS------------ 326 (490)
Q Consensus 263 ~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~----~~~L~~l~~~~~------------ 326 (490)
.++-.+= -.+.|.-...+.+.+.++ +-..-|++|||||.|...- ..+|+..++..+
T Consensus 390 AEIRGHR-----RTYIGamPGrIiQ~mkka---~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~ 461 (782)
T COG0466 390 AEIRGHR-----RTYIGAMPGKIIQGMKKA---GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVP 461 (782)
T ss_pred HHhcccc-----ccccccCChHHHHHHHHh---CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCc
Confidence 5542110 022333344444444332 2334599999999997652 345655543221
Q ss_pred CCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-----C---CCCCCCHHHHHHHH
Q psy200 327 IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-----D---KFNMFNASALQLLA 398 (490)
Q Consensus 327 ~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-----~---~~~~~~~~~i~~i~ 398 (490)
..-+.|+||+++|.++ .+-.+|..|+. +|.+..|+.+|-.+|.+.+|-.. + ....+++++|..|.
T Consensus 462 yDLS~VmFiaTANsl~---tIP~PLlDRME----iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 462 YDLSKVMFIATANSLD---TIPAPLLDRME----VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred cchhheEEEeecCccc---cCChHHhccee----eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 2457899999999654 33445667774 89999999999888877665322 1 35679999999999
Q ss_pred HHHHHhhC--CHHHHH-HHHHHHHHHHHhccccCCcc-cccCHHHHHHHHHH
Q psy200 399 GKVAAVSG--DIRKAI-DITNHLIDLTYDNVKENGEV-TGIGLKEVLGVISS 446 (490)
Q Consensus 399 ~~i~~~~G--d~r~ai-~ll~~a~~~a~~~~~~~~~~-~~It~~~v~~a~~~ 446 (490)
+.+....| ++.+-| .+|+.++......... . -.|+..++.+-+..
T Consensus 535 ~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k---~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 535 RYYTREAGVRNLEREIAKICRKAAKKILLKKEK---SIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcc---cceeeCHHHHHHHhCC
Confidence 86655555 343334 4666666443332211 1 25666677665543
No 129
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=6.7e-14 Score=141.32 Aligned_cols=199 Identities=16% Similarity=0.248 Sum_probs=131.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhc------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~ 267 (490)
++++|+++.++.|..++..... ..-++.++|+||+|+|||++|+.+++.+...... .-.|..+.+...+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~---~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD---EPGCGECRACRTVLA 81 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC---CCCCCCCHHHHHHhc
Confidence 6799999999999999975310 0146779999999999999999999987533211 112333322222211
Q ss_pred HHHHHhc---CCCCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 268 TIVNELK---LKPGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 268 ~i~~~l~---~~~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
.-.-++. ........+++++.+..+... .++..|+||||+|.|....++.|..+++.+ ....++|+++++
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep--~~~~~fIL~a~~--- 156 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP--PPRTVWLLCAPS--- 156 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC--CCCCeEEEEECC---
Confidence 1000110 011123455666555544322 245679999999999988888888887743 223445555554
Q ss_pred hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 343 LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 343 ~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
.+.+.+.+++||. .+.|.+++.+++..++.... .++++....++. ...|++..++.++
T Consensus 157 -~~~llpTIrSRc~----~i~f~~~~~~~i~~~L~~~~-------~~~~~~a~~la~---~s~G~~~~A~~l~ 214 (394)
T PRK07940 157 -PEDVLPTIRSRCR----HVALRTPSVEAVAEVLVRRD-------GVDPETARRAAR---ASQGHIGRARRLA 214 (394)
T ss_pred -hHHChHHHHhhCe----EEECCCCCHHHHHHHHHHhc-------CCCHHHHHHHHH---HcCCCHHHHHHHh
Confidence 5777899999995 89999999999998887432 246777777765 6678888877654
No 130
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.57 E-value=5e-14 Score=138.01 Aligned_cols=201 Identities=19% Similarity=0.298 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc-eEEEEeccCCCCHHHHHHHHHHHhcCCC
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF-KTIYINCNSVRNAASVYETIVNELKLKP 277 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~-~~~~v~~~~~~~~~~l~~~i~~~l~~~~ 277 (490)
|+.++++|.++|... ....+.+.|+|++|+|||+||..+++.......| .++|+++....+...++..|+..|+...
T Consensus 1 re~~~~~l~~~L~~~--~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN--SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTT--TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCC--CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 688999999999762 2677899999999999999999999885545666 5778888888788899999999998763
Q ss_pred ----CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhh
Q psy200 278 ----GGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQA 353 (490)
Q Consensus 278 ----~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~ 353 (490)
...........+.+.+.. ++++||||+++....- +.+...+.. ...++++ |.+|....+.. .+..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~--~~~LlVlDdv~~~~~~--~~l~~~~~~-~~~~~ki--lvTTR~~~v~~----~~~~ 147 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKD--KRCLLVLDDVWDEEDL--EELREPLPS-FSSGSKI--LVTTRDRSVAG----SLGG 147 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCC--TSEEEEEEEE-SHHHH---------HC-HHSS-EE--EEEESCGGGGT----THHS
T ss_pred cccccccccccccccchhhhcc--ccceeeeeeecccccc--ccccccccc-ccccccc--ccccccccccc----cccc
Confidence 335677788888888774 4899999999986511 111111111 1123443 33453222211 1111
Q ss_pred ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 354 NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 354 R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
. ...+.+.+++.++..++|.+...... ......++.+++.+...||+.+.++.++...+
T Consensus 148 ~----~~~~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 148 T----DKVIELEPLSEEEALELFKKRAGRKE---SESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp C----EEEEECSS--HHHHHHHHHHHHTSHS-------TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred c----cccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence 1 14799999999999999999876542 11122223333444458999999999886655
No 131
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.57 E-value=2.5e-14 Score=122.94 Aligned_cols=119 Identities=26% Similarity=0.425 Sum_probs=88.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEE
Q psy200 222 MYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSIL 301 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~v 301 (490)
|+|+||||+|||++++.+++.++ +.++.+++....+ ...+.....+...+.++... .+++|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~~--------------~~~~~~~~~i~~~~~~~~~~-~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELIS--------------SYAGDSEQKIRDFFKKAKKS-AKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHHT--------------SSTTHHHHHHHHHHHHHHHT-STSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----ccccccccccccc--------------cccccccccccccccccccc-cccee
Confidence 68999999999999999999985 7889998876521 23334555666666665443 24799
Q ss_pred EEEecCccccccC-----------HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhh-hccCCCCeeEEeC
Q psy200 302 LILDEIDALESRK-----------QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQ-ANVTLQPTLMNFA 365 (490)
Q Consensus 302 I~IDEid~l~~~~-----------~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~-~R~~~~~~~i~~~ 365 (490)
|||||+|.+.... ...|...++.......++++|+++|. .+.+.+.+. +||. ..+.|+
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~---~~~i~~~l~~~rf~---~~i~~~ 131 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS---PDKIDPALLRSRFD---RRIEFP 131 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS---GGGSCHHHHSTTSE---EEEEE-
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC---hhhCCHhHHhCCCc---EEEEcC
Confidence 9999999998776 45666667666555678999999995 566777888 8886 355553
No 132
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=1.7e-13 Score=149.72 Aligned_cols=236 Identities=16% Similarity=0.195 Sum_probs=153.1
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHHHhhhc--cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHH
Q psy200 186 VEEKAKDSCELPGREVQLEGIRQFLLGHVN--NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA 263 (490)
Q Consensus 186 ~~~~~l~~~~lvgre~~~~~l~~~L~~~~~--~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~ 263 (490)
.++..|. ++++|.++.++++.++|..... ...+..++|+||||+|||++++.++..++ ..++.+++....+..
T Consensus 315 ~~~~~l~-~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~----~~~~~i~~~~~~d~~ 389 (784)
T PRK10787 315 QAQEILD-TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG----RKYVRMALGGVRDEA 389 (784)
T ss_pred HHHHHhh-hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEcCCCCCHH
Confidence 3444444 7899999999999998874322 23566899999999999999999999875 456777766665544
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC----HHHHHHhHhCCC------------C
Q psy200 264 SVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK----QTILYTIFEWPS------------I 327 (490)
Q Consensus 264 ~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~----~~~L~~l~~~~~------------~ 327 (490)
.+...-. .+.|.....+...+... +....||+|||+|.+.... +++|+.+++... .
T Consensus 390 ~i~g~~~-----~~~g~~~G~~~~~l~~~---~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 390 EIRGHRR-----TYIGSMPGKLIQKMAKV---GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred Hhccchh-----ccCCCCCcHHHHHHHhc---CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccc
Confidence 3322110 12222223333333221 1123489999999998654 477887765321 1
Q ss_pred CCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhc--------cCCCCCCCHHHHHHHHH
Q psy200 328 PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQ--------TDKFNMFNASALQLLAG 399 (490)
Q Consensus 328 ~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~--------~~~~~~~~~~~i~~i~~ 399 (490)
.-+++++|+++|.. .+.++|.+||. .+.|.+|+.++..+|+++++.. ......+++++++.|++
T Consensus 462 dls~v~~i~TaN~~----~i~~aLl~R~~----ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~ 533 (784)
T PRK10787 462 DLSDVMFVATSNSM----NIPAPLLDRME----VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred cCCceEEEEcCCCC----CCCHHHhccee----eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence 33789999999864 26788889996 7999999999999998887741 11345689999999997
Q ss_pred HHHHhhCCHHHHHH----HHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 400 KVAAVSGDIRKAID----ITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 400 ~i~~~~Gd~r~ai~----ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
... ..-+.|.+-. +++.++......+. ...-.|+.+++.+.+.
T Consensus 534 ~yt-~e~GaR~LeR~I~~i~r~~l~~~~~~~~--~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 534 YYT-REAGVRSLEREISKLCRKAVKQLLLDKS--LKHIEINGDNLHDYLG 580 (784)
T ss_pred hCC-cccCCcHHHHHHHHHHHHHHHHHHhcCC--CceeeecHHHHHHHhC
Confidence 322 2334444433 44444433222221 1124688888777665
No 133
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.56 E-value=4.7e-14 Score=133.41 Aligned_cols=203 Identities=18% Similarity=0.333 Sum_probs=108.1
Q ss_pred CCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH------
Q psy200 196 LPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI------ 269 (490)
Q Consensus 196 lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i------ 269 (490)
|+||+++++.|.+++.. +....++|+||.|+|||+|++.+.+.+. ..++..+|+.+........ +..+
T Consensus 1 F~gR~~el~~l~~~l~~----~~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~ 74 (234)
T PF01637_consen 1 FFGREKELEKLKELLES----GPSQHILLYGPRGSGKTSLLKEFINELK-EKGYKVVYIDFLEESNESS-LRSFIEETSL 74 (234)
T ss_dssp S-S-HHHHHHHHHCHHH------SSEEEEEESTTSSHHHHHHHHHHHCT---EECCCHHCCTTBSHHHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----hcCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCCcEEEEecccchhhhH-HHHHHHHHHH
Confidence 68999999999998864 5678999999999999999999999873 2223445555544432222 1111
Q ss_pred ----HHHhcC--CC---------CCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccc-cc--CHH---HHHHhHhCCCCC
Q psy200 270 ----VNELKL--KP---------GGKSERHQLGAILKYFDTKHKSILLILDEIDALE-SR--KQT---ILYTIFEWPSIP 328 (490)
Q Consensus 270 ----~~~l~~--~~---------~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~-~~--~~~---~L~~l~~~~~~~ 328 (490)
...+.. .. ...........+.+.+.+.+..+||+|||+|.+. .. ... .|..+++... .
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 153 (234)
T PF01637_consen 75 ADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-S 153 (234)
T ss_dssp HCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-c
Confidence 111211 10 1112223333444445444445999999999999 22 233 3333333311 2
Q ss_pred CCcEEEEEecCCCChhHhh---hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhh
Q psy200 329 GSKLVLVGVANALDLTDRM---LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVS 405 (490)
Q Consensus 329 ~~~vilI~~tn~~~~~~~l---~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~ 405 (490)
..++.+|.+.....+...+ ...+..|+. .+.++|++.++..+++...+... ....++++.++.++. .+
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~----~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~----~~ 224 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFS----HIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYS----LT 224 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT-------EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHH----HH
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccc----eEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHH----Hh
Confidence 2333333333222222221 223445554 69999999999999999987765 111358888888876 77
Q ss_pred CCHHHHHHH
Q psy200 406 GDIRKAIDI 414 (490)
Q Consensus 406 Gd~r~ai~l 414 (490)
|+.+..|+.
T Consensus 225 gG~P~~l~~ 233 (234)
T PF01637_consen 225 GGNPRYLQE 233 (234)
T ss_dssp TT-HHHHHH
T ss_pred CCCHHHHhc
Confidence 777766653
No 134
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.56 E-value=4.3e-14 Score=140.21 Aligned_cols=213 Identities=16% Similarity=0.167 Sum_probs=144.7
Q ss_pred CCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC
Q psy200 196 LPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL 275 (490)
Q Consensus 196 lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~ 275 (490)
++|....+..+.+.+... ......|+|+|++||||+++|++++.... ..+-+|+.+||.... ...+-..++..-..
T Consensus 1 liG~S~~m~~~~~~~~~~--a~~~~pVLI~GE~GtGK~~lAr~iH~~s~-r~~~pfv~vnc~~~~-~~~l~~~lfG~~~g 76 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL--APLDRPVLIIGERGTGKELIAARLHYLSK-RWQGPLVKLNCAALS-ENLLDSELFGHEAG 76 (329)
T ss_pred CCcCCHHHHHHHHHHHHH--hCCCCCEEEECCCCChHHHHHHHHHHhcC-ccCCCeEEEeCCCCC-hHHHHHHHhccccc
Confidence 567778888888888774 35678999999999999999999976542 344589999999864 22222233222211
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChh---
Q psy200 276 KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLT--- 344 (490)
Q Consensus 276 ~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~--- 344 (490)
.+.|... .....+..+ . .-+||||||+.|....|..|..+++.... ....+.+|++++.. +.
T Consensus 77 ~~~ga~~-~~~G~~~~a--~---gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~-l~~~~ 149 (329)
T TIGR02974 77 AFTGAQK-RHQGRFERA--D---GGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNAD-LPALA 149 (329)
T ss_pred cccCccc-ccCCchhhC--C---CCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhh-HHHHh
Confidence 2222111 011112211 1 23899999999999999988888764321 13467888888632 11
Q ss_pred --HhhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CCC--CCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 345 --DRMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DKF--NMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 345 --~~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~~--~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
..+.+.|..|+.. ..|.++|+. .+|+..++.+++... +.. ..+++++++.+.. +.|.||+|++.++
T Consensus 150 ~~g~fr~dL~~rl~~--~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~--y~WPGNvrEL~n~ 225 (329)
T TIGR02974 150 AEGRFRADLLDRLAF--DVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE--YHWPGNVRELKNV 225 (329)
T ss_pred hcCchHHHHHHHhcc--hhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh--CCCCchHHHHHHH
Confidence 1344667777743 368999998 678887777766543 223 4689999999998 8899999999999
Q ss_pred HHHHHHHHH
Q psy200 415 TNHLIDLTY 423 (490)
Q Consensus 415 l~~a~~~a~ 423 (490)
+++++..+.
T Consensus 226 i~~~~~~~~ 234 (329)
T TIGR02974 226 VERSVYRHG 234 (329)
T ss_pred HHHHHHhCC
Confidence 999987764
No 135
>KOG2035|consensus
Probab=99.56 E-value=1.1e-13 Score=127.75 Aligned_cols=217 Identities=17% Similarity=0.203 Sum_probs=146.2
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.|.++|.+... +.+.++++....|..... .+...++++|||.|.||-|.+.++.+++-. .++.-+.+....
T Consensus 2 LWvdkyrpksl----~~l~~~~e~~~~Lksl~~----~~d~PHll~yGPSGaGKKTrimclL~elYG-~gveklki~~~t 72 (351)
T KOG2035|consen 2 LWVDKYRPKSL----DELIYHEELANLLKSLSS----TGDFPHLLVYGPSGAGKKTRIMCLLRELYG-VGVEKLKIETRT 72 (351)
T ss_pred cchhhcCcchh----hhcccHHHHHHHHHHhcc----cCCCCeEEEECCCCCCchhhHHHHHHHHhC-CCchheeeeeEE
Confidence 58889998887 889999988877777654 356789999999999999999999999842 111000000000
Q ss_pred CCCH--HHH-----HHHHHHHhcCCCCCCcHH-HHHHHHHHHH-------hcCCCeEEEEEecCccccccCHHHHHHhHh
Q psy200 259 VRNA--ASV-----YETIVNELKLKPGGKSER-HQLGAILKYF-------DTKHKSILLILDEIDALESRKQTILYTIFE 323 (490)
Q Consensus 259 ~~~~--~~l-----~~~i~~~l~~~~~~~s~~-~~~~~l~~~l-------~~~~~~~vI~IDEid~l~~~~~~~L~~l~~ 323 (490)
+.++ +.+ -+...-++.....|..-. -+.+.+.+.. .......|++|-|+|.|....|.+|++.++
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME 152 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTME 152 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHH
Confidence 0000 000 000000000011111111 1112222211 112345699999999999999999999998
Q ss_pred CCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q psy200 324 WPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAA 403 (490)
Q Consensus 324 ~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~ 403 (490)
.. ....++|++|-+ ..++.+++++||- .+.++.++++|+..++...+.+++ ..+..+.+..|++ .
T Consensus 153 kY-s~~~RlIl~cns-----~SriIepIrSRCl----~iRvpaps~eeI~~vl~~v~~kE~--l~lp~~~l~rIa~---k 217 (351)
T KOG2035|consen 153 KY-SSNCRLILVCNS-----TSRIIEPIRSRCL----FIRVPAPSDEEITSVLSKVLKKEG--LQLPKELLKRIAE---K 217 (351)
T ss_pred HH-hcCceEEEEecC-----cccchhHHhhhee----EEeCCCCCHHHHHHHHHHHHHHhc--ccCcHHHHHHHHH---H
Confidence 54 356777776544 4778899999995 799999999999999999999984 5577888999988 8
Q ss_pred hhCCHHHHHHHHHHHH
Q psy200 404 VSGDIRKAIDITNHLI 419 (490)
Q Consensus 404 ~~Gd~r~ai~ll~~a~ 419 (490)
++||+|.||-+|+.+.
T Consensus 218 S~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 218 SNRNLRRALLMLEAVR 233 (351)
T ss_pred hcccHHHHHHHHHHHH
Confidence 8999999998777654
No 136
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.9e-13 Score=143.90 Aligned_cols=210 Identities=17% Similarity=0.173 Sum_probs=151.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
+.++||+++++++.+.|.. ...++-+|+|+||+|||.++..+|..+... .+..++.++...+
T Consensus 170 DPvIGRd~EI~r~iqIL~R----R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L-------- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSR----RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL-------- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhc----cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH--------
Confidence 8999999999999999975 455566778999999999999999998522 1234444443322
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHH---H--HHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQT---I--LYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~---~--L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
..+..+.|..++.+...+.+ +.+.+ ++||||||+|.+.+.+.. . ..+++ .+....+.+.+||+|+..+
T Consensus 238 ----vAGakyRGeFEeRlk~vl~e-v~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiL-KPaLARGeL~~IGATT~~E 310 (786)
T COG0542 238 ----VAGAKYRGEFEERLKAVLKE-VEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLL-KPALARGELRCIGATTLDE 310 (786)
T ss_pred ----hccccccCcHHHHHHHHHHH-HhcCC-CeEEEEechhhhcCCCcccccccchhhhh-HHHHhcCCeEEEEeccHHH
Confidence 11335566656666655555 44434 899999999999766421 1 12222 3445677899999998665
Q ss_pred hhHhh--hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhCC---HHHHHHHH
Q psy200 343 LTDRM--LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSGD---IRKAIDIT 415 (490)
Q Consensus 343 ~~~~l--~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~Gd---~r~ai~ll 415 (490)
+...+ +++|.+||. .+.++.++.++...||+..-..+ .+...++++++...+.....+--| +.+||+++
T Consensus 311 YRk~iEKD~AL~RRFQ----~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLi 386 (786)
T COG0542 311 YRKYIEKDAALERRFQ----KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLL 386 (786)
T ss_pred HHHHhhhchHHHhcCc----eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHH
Confidence 54444 578999996 89999999999999987544433 245679999999998866665554 56899999
Q ss_pred HHHHHHHHhcc
Q psy200 416 NHLIDLTYDNV 426 (490)
Q Consensus 416 ~~a~~~a~~~~ 426 (490)
..|......+.
T Consensus 387 DeA~a~~~l~~ 397 (786)
T COG0542 387 DEAGARVRLEI 397 (786)
T ss_pred HHHHHHHHhcc
Confidence 99987776654
No 137
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.54 E-value=7e-13 Score=122.66 Aligned_cols=191 Identities=18% Similarity=0.214 Sum_probs=133.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
++|+|-+.+.+.|.+.....+.+.+.+++||+|++|||||++++++++++.. .+.+++.+.-..+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~-~GLRlIev~k~~L~~------------ 93 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD-QGLRLIEVSKEDLGD------------ 93 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-cCceEEEECHHHhcc------------
Confidence 7899999999999999999999999999999999999999999999998863 347888885443322
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc-CHHHHHHhHhCC-CCCCCcEEEEEecCCCChh-------
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR-KQTILYTIFEWP-SIPGSKLVLVGVANALDLT------- 344 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~-~~~~L~~l~~~~-~~~~~~vilI~~tn~~~~~------- 344 (490)
...+.+ .+.....++|||+||+-.=... .-..|..+++=. .....++++.+++|+-.+.
T Consensus 94 --------l~~l~~----~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~ 161 (249)
T PF05673_consen 94 --------LPELLD----LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDR 161 (249)
T ss_pred --------HHHHHH----HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhc
Confidence 222222 2333456899999997532211 234566666533 3457789999999933221
Q ss_pred -----------HhhhH--HhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC--CHH
Q psy200 345 -----------DRMLP--RLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG--DIR 409 (490)
Q Consensus 345 -----------~~l~~--~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G--d~r 409 (490)
+.+.+ .|..|||+ .|.|.+++.++..+|+.+.+... ...++++.+..-|...+...| .-|
T Consensus 162 ~~~~~~eih~~d~~eEklSLsDRFGL---~l~F~~~~q~~YL~IV~~~~~~~--g~~~~~e~l~~~Al~wa~~rg~RSGR 236 (249)
T PF05673_consen 162 EDIQDDEIHPSDTIEEKLSLSDRFGL---WLSFYPPDQEEYLAIVRHYAERY--GLELDEEELRQEALQWALRRGGRSGR 236 (249)
T ss_pred cCCCccccCcchHHHHHHhHHHhCCc---EEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHcCCCCHH
Confidence 11222 57889997 89999999999999999999877 355665555544443333344 344
Q ss_pred HHHHH
Q psy200 410 KAIDI 414 (490)
Q Consensus 410 ~ai~l 414 (490)
-|-+.
T Consensus 237 tA~QF 241 (249)
T PF05673_consen 237 TARQF 241 (249)
T ss_pred HHHHH
Confidence 44443
No 138
>PRK04132 replication factor C small subunit; Provisional
Probab=99.53 E-value=3.5e-13 Score=146.12 Aligned_cols=164 Identities=19% Similarity=0.226 Sum_probs=126.3
Q ss_pred EEEEC--CCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc---
Q psy200 222 MYISG--PPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT--- 295 (490)
Q Consensus 222 ill~G--ppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~--- 295 (490)
-++.| |.+.||||+|+++++++... -+..++++|++..... +.+++.+.++...
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi--------------------d~IR~iIk~~a~~~~~ 626 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI--------------------NVIREKVKEFARTKPI 626 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH--------------------HHHHHHHHHHHhcCCc
Confidence 34568 99999999999999997321 2357899999875332 2333333322211
Q ss_pred -CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 296 -KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 296 -~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
+.+..||||||+|.|....|++|+.+++.+ ...+.||++||. ...+.+.+++||. .+.|.+++.+++..
T Consensus 627 ~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep---~~~~~FILi~N~---~~kIi~tIrSRC~----~i~F~~ls~~~i~~ 696 (846)
T PRK04132 627 GGASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVRFILSCNY---SSKIIEPIQSRCA----IFRFRPLRDEDIAK 696 (846)
T ss_pred CCCCCEEEEEECcccCCHHHHHHHHHHhhCC---CCCeEEEEEeCC---hhhCchHHhhhce----EEeCCCCCHHHHHH
Confidence 123569999999999998999999998743 345667777773 5677899999995 89999999999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy200 375 IISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLID 420 (490)
Q Consensus 375 il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~ 420 (490)
.|...+..+ ...++++++..|++ .+.||+|.++++|+.+..
T Consensus 697 ~L~~I~~~E--gi~i~~e~L~~Ia~---~s~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 697 RLRYIAENE--GLELTEEGLQAILY---IAEGDMRRAINILQAAAA 737 (846)
T ss_pred HHHHHHHhc--CCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHH
Confidence 999988876 35578999999987 889999999999988764
No 139
>KOG2004|consensus
Probab=99.53 E-value=4.2e-13 Score=138.11 Aligned_cols=200 Identities=20% Similarity=0.254 Sum_probs=137.7
Q ss_pred HHhhcCCCCCCChHHHHHHHHHHHHhhhcc--CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 187 EEKAKDSCELPGREVQLEGIRQFLLGHVNN--ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 187 ~~~~l~~~~lvgre~~~~~l~~~L~~~~~~--~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
++..|. ++.+|-++..+++.++|.-.... -.++.++++||||+|||++++.||..++ ..|+.++...+.+..+
T Consensus 405 Ak~iLd-eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn----RkFfRfSvGG~tDvAe 479 (906)
T KOG2004|consen 405 AKEILD-EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN----RKFFRFSVGGMTDVAE 479 (906)
T ss_pred HHHhhc-ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC----CceEEEeccccccHHh
Confidence 344444 89999999999999998644322 2678899999999999999999999986 5678887777766544
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC----HHHHHHhHhCCC------------CC
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK----QTILYTIFEWPS------------IP 328 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~----~~~L~~l~~~~~------------~~ 328 (490)
+-.+= -.+.|.-...+.+.+... +-..-+++|||||.+.... ..+|+.+++..+ ..
T Consensus 480 IkGHR-----RTYVGAMPGkiIq~LK~v---~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 480 IKGHR-----RTYVGAMPGKIIQCLKKV---KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred hcccc-----eeeeccCChHHHHHHHhh---CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccc
Confidence 32110 012223333333333321 1224489999999997542 345666554322 13
Q ss_pred CCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--------CCCCCCCHHHHHHHHHH
Q psy200 329 GSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--------DKFNMFNASALQLLAGK 400 (490)
Q Consensus 329 ~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--------~~~~~~~~~~i~~i~~~ 400 (490)
-++|+|||++|. .+.+-+.|+.|+. .|.+..|..+|-.+|.+.+|-.. .....++++++..|.+.
T Consensus 552 LSkVLFicTAN~---idtIP~pLlDRME----vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~ 624 (906)
T KOG2004|consen 552 LSKVLFICTANV---IDTIPPPLLDRME----VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER 624 (906)
T ss_pred hhheEEEEeccc---cccCChhhhhhhh----eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH
Confidence 578999999994 5666778889985 89999999999998887776433 23466888888888875
Q ss_pred HHHhhC
Q psy200 401 VAAVSG 406 (490)
Q Consensus 401 i~~~~G 406 (490)
+....|
T Consensus 625 YcrEaG 630 (906)
T KOG2004|consen 625 YCREAG 630 (906)
T ss_pred HHHHHh
Confidence 544444
No 140
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.53 E-value=6.1e-14 Score=141.75 Aligned_cols=217 Identities=19% Similarity=0.256 Sum_probs=153.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|+...+++|.+.+.+. ....-.|+|+|+.||||-.+|++|.+. ....+-+|+.+||..++ ..-+-++++..-
T Consensus 141 ~~liG~S~am~~l~~~i~kv--A~s~a~VLI~GESGtGKElvAr~IH~~-S~R~~~PFVavNcaAip-~~l~ESELFGhe 216 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKV--APSDASVLITGESGTGKELVARAIHQA-SPRAKGPFIAVNCAAIP-ENLLESELFGHE 216 (464)
T ss_pred CCceecCHHHHHHHHHHHHH--hCCCCCEEEECCCCCcHHHHHHHHHhh-CcccCCCceeeecccCC-HHHHHHHhhccc
Confidence 78999999999999999874 466789999999999999999999554 33445689999999973 222222333322
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
.+.+.|..... ...|+.+ .+| .||||||..|.-.-|..|+..++.... -...+.||++||.. +.+
T Consensus 217 kGAFTGA~~~r-~G~fE~A--~GG---TLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~d-L~~ 289 (464)
T COG2204 217 KGAFTGAITRR-IGRFEQA--NGG---TLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRD-LEE 289 (464)
T ss_pred ccCcCCccccc-CcceeEc--CCc---eEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcC-HHH
Confidence 22233221111 1122211 112 999999999999888888888764422 24567899999842 322
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc-----CCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT-----DKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~-----~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
++.+.|+.|+.. -.|.++|+- .+++-.++.+++.+. .....+++++++.+.. +.|.||+|++.|
T Consensus 290 ~v~~G~FReDLyyRLnV--~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~--y~WPGNVREL~N 365 (464)
T COG2204 290 EVAAGRFREDLYYRLNV--VPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLA--YDWPGNVRELEN 365 (464)
T ss_pred HHHcCCcHHHHHhhhcc--ceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh--CCCChHHHHHHH
Confidence 234677778764 367778886 567777777766554 2346799999999987 899999999999
Q ss_pred HHHHHHHHHHhc
Q psy200 414 ITNHLIDLTYDN 425 (490)
Q Consensus 414 ll~~a~~~a~~~ 425 (490)
++++++.++...
T Consensus 366 ~ver~~il~~~~ 377 (464)
T COG2204 366 VVERAVILSEGP 377 (464)
T ss_pred HHHHHHhcCCcc
Confidence 999998877654
No 141
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=1.2e-12 Score=126.26 Aligned_cols=206 Identities=11% Similarity=0.156 Sum_probs=133.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHH--------HHhcC---CCCCCcHHHH-H
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIV--------NELKL---KPGGKSERHQ-L 286 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~--------~~l~~---~~~~~s~~~~-~ 286 (490)
+.+++|+|+||||||++|+++++.++ ..++.++|.......+++.... ..+.. ...+...... .
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg----~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRD----RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVD 96 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC----CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecC
Confidence 57899999999999999999998764 6788899987666665543321 00000 0000000000 0
Q ss_pred HHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC--C-----------CCCcEEEEEecCCCC--hhHhhhHHh
Q psy200 287 GAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS--I-----------PGSKLVLVGVANALD--LTDRMLPRL 351 (490)
Q Consensus 287 ~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~--~-----------~~~~vilI~~tn~~~--~~~~l~~~l 351 (490)
..+..+... ..+|+|||++.+....+..|..+++... . .+..+.+|+++|..+ ....+.+.+
T Consensus 97 g~l~~A~~~---g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL 173 (262)
T TIGR02640 97 NRLTLAVRE---GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDAL 173 (262)
T ss_pred chHHHHHHc---CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHH
Confidence 112222322 2399999999999888888888875321 0 123677888998542 223446778
Q ss_pred hhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhh--C-----CHHHHHHHHHHHHHHHHh
Q psy200 352 QANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVS--G-----DIRKAIDITNHLIDLTYD 424 (490)
Q Consensus 352 ~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~--G-----d~r~ai~ll~~a~~~a~~ 424 (490)
.+||. .+.+..++.++..+|+..++. +.++.++.+.+.+.... + ++|.+|.+++.+...+.
T Consensus 174 ~~R~~----~i~i~~P~~~~e~~Il~~~~~-------~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~~- 241 (262)
T TIGR02640 174 LDRLI----TIFMDYPDIDTETAILRAKTD-------VAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQDI- 241 (262)
T ss_pred HhhcE----EEECCCCCHHHHHHHHHHhhC-------CCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcCC-
Confidence 88985 799999999999999988652 35666666665443322 1 37777777666654432
Q ss_pred ccccCCcccccCHHHHHHHHHHhccC
Q psy200 425 NVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 425 ~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
...++.++|.++...+..+
T Consensus 242 -------~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 242 -------PVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred -------CCCCCcHHHHHHHHHHhcc
Confidence 3468899999998888754
No 142
>KOG0735|consensus
Probab=99.52 E-value=5.2e-13 Score=137.20 Aligned_cols=192 Identities=18% Similarity=0.235 Sum_probs=134.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|-.+..+.|.+.+..-.+. ....+||||||||||||.||.+++.... +.|+.+-++++
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~----~~fisvKGPEl----- 737 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN----LRFISVKGPEL----- 737 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC----eeEEEecCHHH-----
Confidence 78899998888888887654221 1346899999999999999999998854 77777755433
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------HHHHHHhH-hCCCC-CCCcEEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------QTILYTIF-EWPSI-PGSKLVL 334 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------~~~L~~l~-~~~~~-~~~~vil 334 (490)
+. ++.|.+++.+++.|.++.. .+|||||+||+|.+..++ .....+++ ++... .-..+.+
T Consensus 738 -L~--------KyIGaSEq~vR~lF~rA~~--a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 738 -LS--------KYIGASEQNVRDLFERAQS--AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred -HH--------HHhcccHHHHHHHHHHhhc--cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 22 4567889999999988765 579999999999998663 22333433 22222 2345777
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRKAI 412 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai 412 (490)
+++|.+.|+.+ +++. |-|.-...+..+.++..+..+|++...... ..-++..++.++.+..+++| |+..++
T Consensus 807 ~aaTsRpdliD---pALL-RpGRlD~~v~C~~P~~~eRl~il~~ls~s~---~~~~~vdl~~~a~~T~g~tgADlq~ll 878 (952)
T KOG0735|consen 807 LAATSRPDLID---PALL-RPGRLDKLVYCPLPDEPERLEILQVLSNSL---LKDTDVDLECLAQKTDGFTGADLQSLL 878 (952)
T ss_pred EEecCCccccC---Hhhc-CCCccceeeeCCCCCcHHHHHHHHHHhhcc---CCccccchHHHhhhcCCCchhhHHHHH
Confidence 78887766544 4443 223223578899999999999998765543 33456678899987777777 454443
No 143
>KOG0730|consensus
Probab=99.52 E-value=4.1e-13 Score=137.68 Aligned_cols=218 Identities=17% Similarity=0.230 Sum_probs=151.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
..+.|....+..+...+...+. ...++.+++|||||+|||.++++|+++.. ..++.+|++..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~pel----- 254 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPEL----- 254 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHHH-----
Confidence 3566677777777666554322 24678999999999999999999999864 56677776543
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC----------HHHHHHhHhCCCCCCCcEEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK----------QTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~----------~~~L~~l~~~~~~~~~~vil 334 (490)
+. .+.|++...+++.|+++.+.. -|.+|||||+|.+...+ -..|+.++++.. ...++++
T Consensus 255 -i~--------k~~gEte~~LR~~f~~a~k~~-~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-~~~~viv 323 (693)
T KOG0730|consen 255 -IS--------KFPGETESNLRKAFAEALKFQ-VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-PDAKVIV 323 (693)
T ss_pred -HH--------hcccchHHHHHHHHHHHhccC-CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-CcCcEEE
Confidence 11 456678889999999887642 28999999999998642 134556666543 5678999
Q ss_pred EEecCCCChhHhhhHHhhh-ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQA-NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~-R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
++++|+. +.+++.+++ ||. ..+.+.-++.++..+|++..+.... . .++..+..++...+++.| ..+-.
T Consensus 324 l~atnrp---~sld~alRRgRfd---~ev~IgiP~~~~RldIl~~l~k~~~--~-~~~~~l~~iA~~thGyvG--aDL~~ 392 (693)
T KOG0730|consen 324 LAATNRP---DSLDPALRRGRFD---REVEIGIPGSDGRLDILRVLTKKMN--L-LSDVDLEDIAVSTHGYVG--ADLAA 392 (693)
T ss_pred EEecCCc---cccChhhhcCCCc---ceeeecCCCchhHHHHHHHHHHhcC--C-cchhhHHHHHHHccchhH--HHHHH
Confidence 9999864 455666764 676 5899999999999999998887762 2 256778888873333333 12234
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+|..|...+.++ +++++..|+..+.+...
T Consensus 393 l~~ea~~~~~r~----------~~~~~~~A~~~i~psa~ 421 (693)
T KOG0730|consen 393 LCREASLQATRR----------TLEIFQEALMGIRPSAL 421 (693)
T ss_pred HHHHHHHHHhhh----------hHHHHHHHHhcCCchhh
Confidence 666665555444 35666666666655444
No 144
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.51 E-value=1.3e-13 Score=136.98 Aligned_cols=215 Identities=17% Similarity=0.165 Sum_probs=146.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+.++|+...+.++.+.+.... ....+|+|+|++||||+++|+++.... ...+-+++.++|.... ...+-..++..-
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a--~~~~pVlI~GE~GtGK~~lA~~iH~~s-~r~~~pfv~v~c~~~~-~~~~~~~lfg~~ 81 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA--PLDKPVLIIGERGTGKELIASRLHYLS-SRWQGPFISLNCAALN-ENLLDSELFGHE 81 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh--CCCCCEEEECCCCCcHHHHHHHHHHhC-CccCCCeEEEeCCCCC-HHHHHHHHcccc
Confidence 679999999999999988753 557899999999999999999997543 2334589999999874 333333333222
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChh-
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLT- 344 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~- 344 (490)
...+.|.... ....+.. .. + -+||||||+.|....|..|..+++.... ....+.+|++++.. +.
T Consensus 82 ~~~~~g~~~~-~~g~l~~--a~-g--GtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~-l~~ 154 (326)
T PRK11608 82 AGAFTGAQKR-HPGRFER--AD-G--GTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD-LPA 154 (326)
T ss_pred ccccCCcccc-cCCchhc--cC-C--CeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh-HHH
Confidence 1111111111 1112221 11 2 2899999999999999999888764321 12357777777632 21
Q ss_pred ----HhhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CCC--CCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 345 ----DRMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DKF--NMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 345 ----~~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~~--~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
..+.+.+..|+.. ..|.++|+. .+|+..++.+++... +.. ..+++++++.+.. +.|.||++++-
T Consensus 155 l~~~g~f~~dL~~~l~~--~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~--y~WPGNvrEL~ 230 (326)
T PRK11608 155 MVAEGKFRADLLDRLAF--DVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLN--YRWPGNIRELK 230 (326)
T ss_pred HHHcCCchHHHHHhcCC--CEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh--CCCCcHHHHHH
Confidence 1234667777743 379999997 467777777665433 222 3589999999998 89999999999
Q ss_pred HHHHHHHHHHH
Q psy200 413 DITNHLIDLTY 423 (490)
Q Consensus 413 ~ll~~a~~~a~ 423 (490)
+++++++..+.
T Consensus 231 ~vl~~a~~~~~ 241 (326)
T PRK11608 231 NVVERSVYRHG 241 (326)
T ss_pred HHHHHHHHhcC
Confidence 99999987654
No 145
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.50 E-value=3.9e-13 Score=145.79 Aligned_cols=213 Identities=16% Similarity=0.203 Sum_probs=143.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-----cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN-----NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~-----~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
..++|+++.++.|...+..+.. ..+.+.++|+||+|||||.+|+.+++.+. ..++.++|..+..... ...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~----~~~i~id~se~~~~~~-~~~ 532 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYMERHT-VSR 532 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC----CCcEEeechhhccccc-HHH
Confidence 6799999999999999986532 12345799999999999999999999884 5678888877643222 122
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCC
Q psy200 269 IVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANA 340 (490)
Q Consensus 269 i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~ 340 (490)
+ ++.+ .|.........+.+++.. ....|||||||+.+....++.|+++++.... .-.++++|+++|.
T Consensus 533 L---iG~~-~gyvg~~~~g~L~~~v~~-~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 533 L---IGAP-PGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred H---cCCC-CCcccccccchHHHHHHh-CCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 2 1221 111111111233344433 3357999999999998888889888874321 1246788888882
Q ss_pred C---------C-------------hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-------CCCCCCCH
Q psy200 341 L---------D-------------LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-------DKFNMFNA 391 (490)
Q Consensus 341 ~---------~-------------~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-------~~~~~~~~ 391 (490)
- . +...+.|.|..|+. .++.|+|++.+++.+|+...+... +....+++
T Consensus 608 g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid---~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD---NIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred CHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCC---EEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 1 0 01224467777876 589999999999999987665432 56778999
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 392 SALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 392 ~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
++++.|++..+....+.|.+-.++++-+
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~~l 712 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHH
Confidence 9999999855555555565555444443
No 146
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.50 E-value=1.4e-13 Score=138.94 Aligned_cols=231 Identities=16% Similarity=0.181 Sum_probs=160.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHH-HHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVY-ETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~-~~i~~~ 272 (490)
++++|...++.++.+.+.. .......|+|.|+.||||-.+|+++.+. ....+-+|+.+||..++ ..++ ++++..
T Consensus 245 ~~Iig~S~~m~~~~~~akr--~A~tdstVLi~GESGTGKElfA~~IH~~-S~R~~~PFIaiNCaAiP--e~LlESELFGy 319 (560)
T COG3829 245 DDIIGESPAMLRVLELAKR--IAKTDSTVLILGESGTGKELFARAIHNL-SPRANGPFIAINCAAIP--ETLLESELFGY 319 (560)
T ss_pred hhhccCCHHHHHHHHHHHh--hcCCCCcEEEecCCCccHHHHHHHHHhc-CcccCCCeEEEecccCC--HHHHHHHHhCc
Confidence 7899999999888888876 3567789999999999999999999654 34556699999999973 3333 334333
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC--------CCCCcEEEEEecCCCChh
Q psy200 273 LKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS--------IPGSKLVLVGVANALDLT 344 (490)
Q Consensus 273 l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~--------~~~~~vilI~~tn~~~~~ 344 (490)
-.+.+.|....--...|+. ..+| .||||||..|.-.-|..|++.++... .....|.+|++||.. +.
T Consensus 320 e~GAFTGA~~~GK~GlfE~--A~gG---TLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~n-L~ 393 (560)
T COG3829 320 EKGAFTGASKGGKPGLFEL--ANGG---TLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRN-LE 393 (560)
T ss_pred CCccccccccCCCCcceee--ccCC---eEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcC-HH
Confidence 3334444332212222222 1122 99999999999888888877765321 235678999999843 22
Q ss_pred Hh-----hhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CCC-CCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 345 DR-----MLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DKF-NMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 345 ~~-----l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~~-~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
+. +-+.|+.|++. ..|.++|+- ++++..+...++.+. +.. ..++++++..+.+ +.|.||+|++-
T Consensus 394 ~~i~~G~FReDLYYRLNV--~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~--y~WPGNVRELe 469 (560)
T COG3829 394 KMIAEGTFREDLYYRLNV--IPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR--YDWPGNVRELE 469 (560)
T ss_pred HHHhcCcchhhheeeece--eeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh--CCCCchHHHHH
Confidence 22 33567777764 356777775 567777766666543 323 3489999999988 89999999999
Q ss_pred HHHHHHHHHHHhccccCCcccccCHHHHH-HHHHH
Q psy200 413 DITNHLIDLTYDNVKENGEVTGIGLKEVL-GVISS 446 (490)
Q Consensus 413 ~ll~~a~~~a~~~~~~~~~~~~It~~~v~-~a~~~ 446 (490)
|++++++.++.... .|+.+|+- ..+..
T Consensus 470 NviER~v~~~~~~~-------~I~~~~lp~~~l~~ 497 (560)
T COG3829 470 NVIERAVNLVESDG-------LIDADDLPAFALEE 497 (560)
T ss_pred HHHHHHHhccCCcc-------eeehhhcchhhhcc
Confidence 99999998665555 47777765 44444
No 147
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.50 E-value=2.6e-13 Score=141.96 Aligned_cols=232 Identities=18% Similarity=0.198 Sum_probs=153.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
++++|....+..+.+.+... .....+|+|+|++||||+++|+.+++... ..+.+|+.+||..+.. ..+-..++..-
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~--A~~~~pVLI~GE~GTGKe~lA~~IH~~S~-r~~~pfv~inC~~l~e-~lleseLFG~~ 287 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLY--ARSDATVLILGESGTGKELVAQAIHQLSG-RRDFPFVAINCGAIAE-SLLEAELFGYE 287 (526)
T ss_pred hheeeCCHHHHHHHHHHHHH--hCCCCcEEEECCCCcCHHHHHHHHHHhcC-cCCCCEEEeccccCCh-hHHHHHhcCCc
Confidence 66999999999999988763 34578999999999999999999976542 3456899999998742 22222222221
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
.+.+.|.........|+.+ . .-.||||||+.|....|..|..+++.... ....+.+|++++.. +.+
T Consensus 288 ~gaftga~~~~~~Gl~e~A--~---gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~-l~~ 361 (526)
T TIGR02329 288 EGAFTGARRGGRTGLIEAA--H---RGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCA-LTT 361 (526)
T ss_pred ccccccccccccccchhhc--C---CceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCC-HHH
Confidence 1222221111111122211 1 22899999999999999999888764321 12345677777632 211
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhccC--CCCCCCHHHHHH-------HHHHHHHhhCCHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQTD--KFNMFNASALQL-------LAGKVAAVSGDIR 409 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~~--~~~~~~~~~i~~-------i~~~i~~~~Gd~r 409 (490)
.+.+.+..|+.. ..|.++|+. .+|+..++.+++.... ....+++++++. +.. +.|.||+|
T Consensus 362 ~v~~g~fr~dL~~rL~~--~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~--y~WPGNvr 437 (526)
T TIGR02329 362 AVQQGRFRRDLFYRLSI--LRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQR--YPWPGNVR 437 (526)
T ss_pred HhhhcchhHHHHHhcCC--cEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHh--CCCCchHH
Confidence 234456666643 479999998 4688888777776541 123588898887 665 78999999
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++-+++++++..+.... ...|+.+++....
T Consensus 438 EL~nvier~~i~~~~~~-----~~~I~~~~l~~~~ 467 (526)
T TIGR02329 438 ELRNLVERLALELSAMP-----AGALTPDVLRALA 467 (526)
T ss_pred HHHHHHHHHHHhcccCC-----CCccCHHHhhhhc
Confidence 99999999987664322 2368888876544
No 148
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.50 E-value=2.4e-13 Score=135.20 Aligned_cols=219 Identities=20% Similarity=0.247 Sum_probs=151.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|.....+++.+.+.. ......+|+|+|++||||+.+|+.++........-+|+.+||..+...-.... ++..-
T Consensus 78 ~~LIG~~~~~~~~~eqik~--~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~e-LFG~~ 154 (403)
T COG1221 78 DDLIGESPSLQELREQIKA--YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAE-LFGHE 154 (403)
T ss_pred hhhhccCHHHHHHHHHHHh--hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHH-Hhccc
Confidence 7899999999999998887 45677899999999999999999998433221456899999999854332222 33333
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC--------CCCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS--------IPGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~--------~~~~~vilI~~tn~~~~~~ 345 (490)
.+.+.|. ...-...|+.+ . ++ .||+|||+.|....|..|+.+++... .....|.+||+|+. ++.+
T Consensus 155 kGaftGa-~~~k~Glfe~A-~--GG--tLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~-~l~~ 227 (403)
T COG1221 155 KGAFTGA-QGGKAGLFEQA-N--GG--TLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE-DLEE 227 (403)
T ss_pred cceeecc-cCCcCchheec-C--CC--EEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc-CHHH
Confidence 3333331 11111222221 1 22 99999999999999999999987532 23567889998873 3455
Q ss_pred hhhH--HhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CCC-CCCCHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy200 346 RMLP--RLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DKF-NMFNASALQLLAGKVAAVSGDIRKAIDITN 416 (490)
Q Consensus 346 ~l~~--~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~~-~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~ 416 (490)
.+.. .+.+|+.. ..|.++|+. .+|+..++.+++..+ +.. ....++++..+.. +.+.||+|++.|+++
T Consensus 228 ~~~~g~dl~~rl~~--~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~--y~~pGNirELkN~Ve 303 (403)
T COG1221 228 AVLAGADLTRRLNI--LTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA--YDWPGNIRELKNLVE 303 (403)
T ss_pred HHHhhcchhhhhcC--ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh--CCCCCcHHHHHHHHH
Confidence 5555 56554332 378888887 457777766666554 222 2334577887776 778999999999999
Q ss_pred HHHHHHHhcc
Q psy200 417 HLIDLTYDNV 426 (490)
Q Consensus 417 ~a~~~a~~~~ 426 (490)
+++..+...+
T Consensus 304 ~~~~~~~~~~ 313 (403)
T COG1221 304 RAVAQASGEG 313 (403)
T ss_pred HHHHHhcccc
Confidence 9998886554
No 149
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.49 E-value=8.8e-13 Score=133.88 Aligned_cols=227 Identities=17% Similarity=0.222 Sum_probs=135.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---c---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---N---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN 261 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~ 261 (490)
+.++|++..++.|...+.+... . ....+++|+||+|||||++|+.++..+. .+++.+++..+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~----~pf~~id~~~l~~ 146 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD----VPFAIADATTLTE 146 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC----CCceecchhhccc
Confidence 6799999999988777643211 1 1347899999999999999999998874 5677777765421
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----HhcCCCeEEEEEecCcccccc--------------CHHHHHHhHh
Q psy200 262 AASVYETIVNELKLKPGGKSERHQLGAILKY----FDTKHKSILLILDEIDALESR--------------KQTILYTIFE 323 (490)
Q Consensus 262 ~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~----l~~~~~~~vI~IDEid~l~~~--------------~~~~L~~l~~ 323 (490)
. .+.|.....+...+... +.. ..+.||||||||.+... .|..|+.+++
T Consensus 147 ~-------------gyvG~d~e~~l~~l~~~~~~~~~~-a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 147 A-------------GYVGEDVENILLKLLQAADYDVEK-AQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE 212 (412)
T ss_pred C-------------CcccchHHHHHHHHHHhccccHHH-cCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh
Confidence 1 12223333322221111 111 23569999999999754 3567777775
Q ss_pred CCC----------CCCCcEEEEEecCC--------CC-------------------------------hhHh--------
Q psy200 324 WPS----------IPGSKLVLVGVANA--------LD-------------------------------LTDR-------- 346 (490)
Q Consensus 324 ~~~----------~~~~~vilI~~tn~--------~~-------------------------------~~~~-------- 346 (490)
-.. .....+++|.++|. .. +...
T Consensus 213 g~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~ 292 (412)
T PRK05342 213 GTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIK 292 (412)
T ss_pred cCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHH
Confidence 210 11122333333331 00 0000
Q ss_pred --hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHH----H-------HhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 347 --MLPRLQANVTLQPTLMNFAPYSREQILEIISQ----K-------LKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 347 --l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~----~-------l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
+.|.|..|+. .++.|.+++.+++.+|+.. . +...+....+++++++.|++..+....+.|.+-.
T Consensus 293 ~gf~PEflgRld---~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrr 369 (412)
T PRK05342 293 FGLIPEFIGRLP---VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRS 369 (412)
T ss_pred HhhhHHHhCCCC---eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHH
Confidence 2455666766 4899999999999999873 2 2223456679999999999865555556666555
Q ss_pred HHHHHHHHHHhccc--cCCcccccCHHHHH
Q psy200 414 ITNHLIDLTYDNVK--ENGEVTGIGLKEVL 441 (490)
Q Consensus 414 ll~~a~~~a~~~~~--~~~~~~~It~~~v~ 441 (490)
++++.+.-...+-- .....-.|+.+.|.
T Consensus 370 iie~~l~~~~~~~p~~~~~~~v~I~~~~v~ 399 (412)
T PRK05342 370 ILEEILLDVMFELPSREDVEKVVITKEVVE 399 (412)
T ss_pred HHHHHhHHHHHhccccCCCceEEECHHHhc
Confidence 55555443322211 11112357777664
No 150
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.49 E-value=1.3e-13 Score=146.47 Aligned_cols=225 Identities=16% Similarity=0.184 Sum_probs=152.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+.++|....+.++.+.+... ......|+|+|++||||+++|++|++... ..+-+++.+||..+.. ..+-..++..-
T Consensus 196 ~~liG~s~~~~~~~~~~~~~--a~~~~pvli~Ge~GtGK~~lA~~ih~~s~-r~~~pfv~i~c~~~~~-~~~~~~lfg~~ 271 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVV--ARSNSTVLLRGESGTGKELIAKAIHYLSP-RAKRPFVKVNCAALSE-TLLESELFGHE 271 (534)
T ss_pred CceEECCHHHHHHHHHHHHH--hCcCCCEEEECCCCccHHHHHHHHHHhCC-CCCCCeEEeecCCCCH-HHHHHHHcCCC
Confidence 68999999999999988874 35677999999999999999999977643 2345899999998733 22222222111
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
...+.+... .....+.. . ..-+||||||+.|....|..|..+++.... ....+.+|++++.. +.+
T Consensus 272 ~~~~~~~~~-~~~g~~~~--a---~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~-l~~ 344 (534)
T TIGR01817 272 KGAFTGAIA-QRKGRFEL--A---DGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD-LEE 344 (534)
T ss_pred CCccCCCCc-CCCCcccc--c---CCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC-HHH
Confidence 111111100 00001111 1 123899999999999999989888764321 11357788877632 211
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
.+.+.|..|+.. ..|.++|+. .+++..++.+++... +....+++++++.+.. +.|.||+|++.++
T Consensus 345 ~~~~~~f~~~L~~rl~~--~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~--~~WPGNvrEL~~v 420 (534)
T TIGR01817 345 AVAKGEFRADLYYRINV--VPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMS--CKWPGNVRELENC 420 (534)
T ss_pred HHHcCCCCHHHHHHhcC--CeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh--CCCCChHHHHHHH
Confidence 234566667653 368899998 678887777776543 2236799999999998 7899999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVL 441 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~ 441 (490)
+++++..+. + ..|+.+++.
T Consensus 421 ~~~a~~~~~--~------~~I~~~~l~ 439 (534)
T TIGR01817 421 LERTATLSR--S------GTITRSDFS 439 (534)
T ss_pred HHHHHHhCC--C------CcccHHHCc
Confidence 999986653 2 357777764
No 151
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.48 E-value=2.3e-12 Score=130.86 Aligned_cols=230 Identities=14% Similarity=0.119 Sum_probs=146.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH-HHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI-VNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i-~~~ 272 (490)
..|+|+++.++.+...+. .+.+++|+||||||||++|++++..+.... .|.++.|.-. ++.+++..+ +..
T Consensus 20 ~~i~gre~vI~lll~aal------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~--~F~~~~~~ft-tp~DLfG~l~i~~ 90 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL------SGESVFLLGPPGIAKSLIARRLKFAFQNAR--AFEYLMTRFS-TPEEVFGPLSIQA 90 (498)
T ss_pred hhccCcHHHHHHHHHHHc------cCCCEEEECCCChhHHHHHHHHHHHhcccC--cceeeeeeec-CcHHhcCcHHHhh
Confidence 889999999988887774 378999999999999999999998765322 3344443311 233332211 011
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcC-CCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCCh
Q psy200 273 LKLKPGGKSERHQLGAILKYFDTK-HKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDL 343 (490)
Q Consensus 273 l~~~~~~~s~~~~~~~l~~~l~~~-~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~ 343 (490)
+.. . ..+.....+. ...-+||+|||+.+....|..|...++.... ...+++ ++++|...-
T Consensus 91 ~~~--~--------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfi-v~ATN~LPE 159 (498)
T PRK13531 91 LKD--E--------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLL-VTASNELPE 159 (498)
T ss_pred hhh--c--------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEE-EEECCCCcc
Confidence 000 0 0111111110 0122999999999999999999888854321 122333 444564322
Q ss_pred hHhhhHHhhhccCCCCeeEEeCCCC-HHHHHHHHHHHHhc-c--------------------CCCCCCCHHHHHHHHHHH
Q psy200 344 TDRMLPRLQANVTLQPTLMNFAPYS-REQILEIISQKLKQ-T--------------------DKFNMFNASALQLLAGKV 401 (490)
Q Consensus 344 ~~~l~~~l~~R~~~~~~~i~~~pls-~~e~~~il~~~l~~-~--------------------~~~~~~~~~~i~~i~~~i 401 (490)
...+.+.+..||. ..+.+++++ .++..++|...... . -....+++.+++.|.+.+
T Consensus 160 ~g~~leAL~DRFl---iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~ 236 (498)
T PRK13531 160 ADSSLEALYDRML---IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLR 236 (498)
T ss_pred cCCchHHhHhhEE---EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHH
Confidence 2345667888885 379999997 45667777653211 0 123456777777777755
Q ss_pred HH---hh----CCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 402 AA---VS----GDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 402 ~~---~~----Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
.. .. -..|..+.+++.+-..|...| ...|+.+|+. .+..+..++.
T Consensus 237 ~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~G-----R~~V~p~Dv~-ll~~vL~HRl 288 (498)
T PRK13531 237 QQLDALPNAPYVSDRRWKKAIRLLQASAFFSG-----RDAIAPIDLI-LLKDCLWHDA 288 (498)
T ss_pred HHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCC-----CCCCCHHHHH-HhHHHhccCH
Confidence 42 11 357888999888888999999 7899999999 7777765544
No 152
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.48 E-value=6.5e-13 Score=139.98 Aligned_cols=217 Identities=16% Similarity=0.224 Sum_probs=150.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|+...++++.+.+... ......|+|+|++||||+++|++++.... ..+-+++.+||..+.. ..+-..++...
T Consensus 187 ~~iig~s~~~~~~~~~i~~~--a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~-r~~~p~v~v~c~~~~~-~~~e~~lfG~~ 262 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVV--AASDLNVLILGETGVGKELVARAIHAASP-RADKPLVYLNCAALPE-SLAESELFGHV 262 (509)
T ss_pred CceeecCHHHHHHHHHHHHH--hCCCCcEEEECCCCccHHHHHHHHHHhCC-cCCCCeEEEEcccCCh-HHHHHHhcCcc
Confidence 67999999999999999874 45678999999999999999999987643 3445899999998853 22222333222
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
...+.+.... ....+.. .. + -+||||||+.|....|..|..+++.... ....+.+|++++.. +.+
T Consensus 263 ~g~~~ga~~~-~~g~~~~--a~-g--GtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~-l~~ 335 (509)
T PRK05022 263 KGAFTGAISN-RSGKFEL--AD-G--GTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD-LRE 335 (509)
T ss_pred ccccCCCccc-CCcchhh--cC-C--CEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC-HHH
Confidence 2222222111 1112221 11 2 2899999999999889888888754321 12467788888643 212
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----C-CCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----D-KFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~-~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+.+.+..|+.. ..|.++|+. .+|+..++.+++.+. + ....+++++++.+.. +.|.||+|++-+
T Consensus 336 ~~~~~~f~~dL~~rl~~--~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~--y~WPGNvrEL~~ 411 (509)
T PRK05022 336 EVRAGRFRADLYHRLSV--FPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA--YDWPGNVRELEH 411 (509)
T ss_pred HHHcCCccHHHHhcccc--cEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh--CCCCCcHHHHHH
Confidence 244566666653 368899997 467777766665543 2 345799999999998 889999999999
Q ss_pred HHHHHHHHHHhc
Q psy200 414 ITNHLIDLTYDN 425 (490)
Q Consensus 414 ll~~a~~~a~~~ 425 (490)
++++|+..+...
T Consensus 412 ~i~ra~~~~~~~ 423 (509)
T PRK05022 412 VISRAALLARAR 423 (509)
T ss_pred HHHHHHHhcCCC
Confidence 999998877654
No 153
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.48 E-value=9.8e-12 Score=114.49 Aligned_cols=209 Identities=19% Similarity=0.321 Sum_probs=147.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSER----HQLGAILKYF 293 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~----~~~~~l~~~l 293 (490)
..+.+.++|+-|+|||.+.+++...+. .....+++++.... +...+...|+.++..... .... .....+....
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-~d~~~~v~i~~~~~-s~~~~~~ai~~~l~~~p~-~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-EDQVAVVVIDKPTL-SDATLLEAIVADLESQPK-VNVNAVLEQIDRELAALV 126 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-CCceEEEEecCcch-hHHHHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHH
Confidence 345788999999999999996666554 44455567766655 667788888888876322 2233 3334455555
Q ss_pred hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCC--CcEEEEEecCCC-ChhHhhhHHhhhccCCCCeeEEeCCCCHH
Q psy200 294 DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPG--SKLVLVGVANAL-DLTDRMLPRLQANVTLQPTLMNFAPYSRE 370 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~--~~vilI~~tn~~-~~~~~l~~~l~~R~~~~~~~i~~~pls~~ 370 (490)
+++++++++++||++.+.....+.|..+.+...... -.++++|-+.-. ++....+..+..|+.+ .|.+.|++.+
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~i---r~~l~P~~~~ 203 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDI---RIELPPLTEA 203 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEE---EEecCCcChH
Confidence 666677999999999999888777777765543333 346777665411 1222225677788873 4999999999
Q ss_pred HHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHhccccCCcccccCHHHHH
Q psy200 371 QILEIISQKLKQTD-KFNMFNASALQLLAGKVAAVSGDIRKAID-ITNHLIDLTYDNVKENGEVTGIGLKEVL 441 (490)
Q Consensus 371 e~~~il~~~l~~~~-~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~-ll~~a~~~a~~~~~~~~~~~~It~~~v~ 441 (490)
+...+|+++++..+ .+..++++++..++. ...| ++.++| ++..|...|...+ ...|+...+.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~---~sqg-~P~lin~~~~~Al~~a~~a~-----~~~v~~a~~~ 267 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHE---ASQG-IPRLINNLATLALDAAYSAG-----EDGVSEAEIK 267 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHH---Hhcc-chHHHHHHHHHHHHHHHHcC-----CCccchhhcc
Confidence 99999999999874 456789999999987 4455 666665 8888888888877 5667666543
No 154
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=2.7e-12 Score=128.73 Aligned_cols=201 Identities=14% Similarity=0.174 Sum_probs=126.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc--e------EEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF--K------TIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~--~------~~~v~~~~~~~~~~l 265 (490)
++++|+++.++.|...+.. +.-++.++|+||+|+||+++|.++++.+-..... . .....|..+.....+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~---~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i 95 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRS---GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI 95 (365)
T ss_pred hhccChHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH
Confidence 7899999999999888864 3456679999999999999999999998533210 0 000002211111111
Q ss_pred HHHHHHH---hcC--CC------CCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcE
Q psy200 266 YETIVNE---LKL--KP------GGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKL 332 (490)
Q Consensus 266 ~~~i~~~---l~~--~~------~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~v 332 (490)
...-.-+ +.. .. .....+++++....... ..+++.||||||+|.+....++.|..+++.+ ....
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep---p~~~ 172 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP---PARS 172 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC---CCCe
Confidence 0000000 000 01 11234555443332211 1356789999999999988888888887743 2344
Q ss_pred EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 333 VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
++|.+++. .+.+.+.+++||. .+.|.+++.+++..++...... ..++.+..+++ ...|+++.++
T Consensus 173 ~~IL~t~~---~~~llpti~SRc~----~i~l~~l~~~~i~~~L~~~~~~------~~~~~~~~l~~---~s~Gsp~~Al 236 (365)
T PRK07471 173 LFLLVSHA---PARLLPTIRSRCR----KLRLRPLAPEDVIDALAAAGPD------LPDDPRAALAA---LAEGSVGRAL 236 (365)
T ss_pred EEEEEECC---chhchHHhhccce----EEECCCCCHHHHHHHHHHhccc------CCHHHHHHHHH---HcCCCHHHHH
Confidence 44445553 3456788999995 8999999999999999875422 24444455554 5678899988
Q ss_pred HHHH
Q psy200 413 DITN 416 (490)
Q Consensus 413 ~ll~ 416 (490)
.+++
T Consensus 237 ~ll~ 240 (365)
T PRK07471 237 RLAG 240 (365)
T ss_pred HHhc
Confidence 8764
No 155
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=4.8e-12 Score=126.12 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=103.6
Q ss_pred EEEEEecCccccccC------------HHHHHHhHhCC-------CCCCCcEEEEEecCCC-ChhHhhhHHhhhccCCCC
Q psy200 300 ILLILDEIDALESRK------------QTILYTIFEWP-------SIPGSKLVLVGVANAL-DLTDRMLPRLQANVTLQP 359 (490)
Q Consensus 300 ~vI~IDEid~l~~~~------------~~~L~~l~~~~-------~~~~~~vilI~~tn~~-~~~~~l~~~l~~R~~~~~ 359 (490)
-||||||||.+.... |..|+.+++-. .....+++|||..-.. .-+..+.|.|..||..
T Consensus 251 GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi-- 328 (443)
T PRK05201 251 GIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI-- 328 (443)
T ss_pred CEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce--
Confidence 399999999997442 44454444321 1234677888766421 2245578999999985
Q ss_pred eeEEeCCCCHHHHHHHHHH----HH-------hccCCCCCCCHHHHHHHHHHHHH-----hhCCHHHHHHHHHHHHHHHH
Q psy200 360 TLMNFAPYSREQILEIISQ----KL-------KQTDKFNMFNASALQLLAGKVAA-----VSGDIRKAIDITNHLIDLTY 423 (490)
Q Consensus 360 ~~i~~~pls~~e~~~il~~----~l-------~~~~~~~~~~~~~i~~i~~~i~~-----~~Gd~r~ai~ll~~a~~~a~ 423 (490)
++.|.+++.+++..||.. .+ ..++....|++++++.||+.... ..-+.|.+-.++++.+.-+.
T Consensus 329 -~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 329 -RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred -EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHh
Confidence 899999999999998832 22 22356678999999999997766 35678888888888886665
Q ss_pred hcccc-CCcccccCHHHHHHHHHHhccCcc
Q psy200 424 DNVKE-NGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 424 ~~~~~-~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
-+... ....-.|+.+.|...+..+.....
T Consensus 408 Fe~p~~~~~~v~I~~~~V~~~l~~l~~~~D 437 (443)
T PRK05201 408 FEAPDMSGETVTIDAAYVDEKLGDLVKDED 437 (443)
T ss_pred ccCCCCCCCEEEECHHHHHHHHHHHHhcCC
Confidence 43321 112346888999888888765433
No 156
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.47 E-value=3.8e-13 Score=140.51 Aligned_cols=230 Identities=19% Similarity=0.228 Sum_probs=149.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHh-------hhcCCceEEEEeccCCCCHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRA-------EIKDAFKTIYINCNSVRNAASVY 266 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l-------~~~~~~~~~~v~~~~~~~~~~l~ 266 (490)
++++|....++++.+.+... ......|+|+|++||||+++|+.+.+.+ ....+.+|+.+||..+.. ..+-
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~--A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lle 295 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLY--ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLE 295 (538)
T ss_pred hheeeCCHHHHHHHHHHHHH--hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHH
Confidence 56999999999999988763 3457899999999999999999998762 223456899999998743 2222
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEec
Q psy200 267 ETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVA 338 (490)
Q Consensus 267 ~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~t 338 (490)
..++..-.+.+.|.........|+. .. .-.||||||+.|....|..|..+++.... ....+.+|++|
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e~--A~---gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat 370 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEI--AH---GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 370 (538)
T ss_pred HHhcCCccccccCccccccCCchhc--cC---CCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEec
Confidence 2222211111221110011112221 11 12899999999999999989888764321 13456788888
Q ss_pred CCCChhH-----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc--CCCCCCCHHHH-------HHHHHHHH
Q psy200 339 NALDLTD-----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT--DKFNMFNASAL-------QLLAGKVA 402 (490)
Q Consensus 339 n~~~~~~-----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~--~~~~~~~~~~i-------~~i~~~i~ 402 (490)
+.. +.. .+.+.+..|+.. ..|.++|+. .+|+..++.+++.+. .....++++++ +.+.. +
T Consensus 371 ~~~-L~~~v~~g~Fr~dL~yrL~~--~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~--y 445 (538)
T PRK15424 371 HCD-LEEDVRQGRFRRDLFYRLSI--LRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLH--Y 445 (538)
T ss_pred CCC-HHHHHhcccchHHHHHHhcC--CeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHh--C
Confidence 632 222 133456666653 478899997 468888888777653 11234677766 34443 6
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHH
Q psy200 403 AVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVL 441 (490)
Q Consensus 403 ~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~ 441 (490)
.|.||+|++-+++++++.++.... ...|+.+++.
T Consensus 446 ~WPGNvREL~nvier~~i~~~~~~-----~~~i~~~~l~ 479 (538)
T PRK15424 446 DWPGNVRELRNLMERLALFLSVEP-----TPDLTPQFLQ 479 (538)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCC-----cCccCHHHhh
Confidence 799999999999999987655332 2456766654
No 157
>KOG0651|consensus
Probab=99.47 E-value=2.5e-13 Score=127.40 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=142.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+.+-|...++.++.+.+.-.+. -..+.+++||||||+|||.++++|+..++ +.++.+..+.+
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg----~nfl~v~ss~l----- 202 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG----VNFLKVVSSAL----- 202 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC----CceEEeeHhhh-----
Confidence 5677777777777775543322 23678999999999999999999999986 55566644433
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------H---HHHHHhHh-CC-CCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------Q---TILYTIFE-WP-SIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------~---~~L~~l~~-~~-~~~~~~ 331 (490)
...+.|++..-+++.+..+.. ..+|+|||||||.+.+.. + ..|.++++ |. .....+
T Consensus 203 ---------v~kyiGEsaRlIRemf~yA~~--~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~r 271 (388)
T KOG0651|consen 203 ---------VDKYIGESARLIRDMFRYARE--VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHR 271 (388)
T ss_pred ---------hhhhcccHHHHHHHHHHHHhh--hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhccc
Confidence 225666777777777776655 558999999999987552 2 33444432 21 224568
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
+-+|+++|+.+ .++++|.+ -+.-...+..+-++......+++-......+...++.+++-.+.+ .. |+. ..
T Consensus 272 Vk~ImatNrpd---tLdpaLlR-pGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d---~f-~ga-d~ 342 (388)
T KOG0651|consen 272 VKTIMATNRPD---TLDPALLR-PGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD---GF-NGA-DL 342 (388)
T ss_pred ccEEEecCCcc---ccchhhcC-CccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh---cc-ChH-HH
Confidence 88999999654 34444432 121113455555555555555544433334456678888777765 22 322 25
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
.+.|..|-..|..+. ...+-.+++..++.+..
T Consensus 343 rn~~tEag~Fa~~~~-----~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 343 RNVCTEAGMFAIPEE-----RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred hhhcccccccccchh-----hHHHhHHHHHHHHHHHH
Confidence 678888887776665 45788899998887764
No 158
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.47 E-value=1.2e-11 Score=123.14 Aligned_cols=151 Identities=15% Similarity=0.213 Sum_probs=104.6
Q ss_pred eEEEEEecCccccccC------------HHHHHHhHhCC-------CCCCCcEEEEEecCCCC-hhHhhhHHhhhccCCC
Q psy200 299 SILLILDEIDALESRK------------QTILYTIFEWP-------SIPGSKLVLVGVANALD-LTDRMLPRLQANVTLQ 358 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~------------~~~L~~l~~~~-------~~~~~~vilI~~tn~~~-~~~~l~~~l~~R~~~~ 358 (490)
.-||||||||.+.... |..|+.+++-. .....+++|||..-... -+..+.|.|..||..
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi- 326 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI- 326 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce-
Confidence 3499999999998542 44555554321 22345777887664221 245578999999985
Q ss_pred CeeEEeCCCCHHHHHHHHH----HH-------HhccCCCCCCCHHHHHHHHHHHHH-----hhCCHHHHHHHHHHHHHHH
Q psy200 359 PTLMNFAPYSREQILEIIS----QK-------LKQTDKFNMFNASALQLLAGKVAA-----VSGDIRKAIDITNHLIDLT 422 (490)
Q Consensus 359 ~~~i~~~pls~~e~~~il~----~~-------l~~~~~~~~~~~~~i~~i~~~i~~-----~~Gd~r~ai~ll~~a~~~a 422 (490)
+..|.+++.+++..||. .. +..++....|++++++.|++.... ..-+.|.+-.++++.+.-+
T Consensus 327 --~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~ 404 (441)
T TIGR00390 327 --RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDI 404 (441)
T ss_pred --EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 89999999999998872 12 233356678999999999997765 3567888888888887665
Q ss_pred Hhcccc-CCcccccCHHHHHHHHHHhccCcc
Q psy200 423 YDNVKE-NGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 423 ~~~~~~-~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
.-+... ....-.|+.+.|...+..+.....
T Consensus 405 ~fe~p~~~~~~v~I~~~~V~~~l~~~~~~~D 435 (441)
T TIGR00390 405 SFEAPDLSGQNITIDADYVSKKLGALVADED 435 (441)
T ss_pred HhcCCCCCCCEEEECHHHHHhHHHHHHhcCC
Confidence 544321 122346899999998888775543
No 159
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.46 E-value=2.6e-12 Score=117.81 Aligned_cols=172 Identities=14% Similarity=0.226 Sum_probs=106.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH---hcCCCCCCcHHHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE---LKLKPGGKSERHQLGAILKYF 293 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~---l~~~~~~~s~~~~~~~l~~~l 293 (490)
.-++.++|+||+|+|||++++.+++.+....... ...|....+...+...-..+ +.......+.+.+.+.+..+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~--~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~ 89 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGG--GEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLS 89 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHc
Confidence 3457799999999999999999999985321100 00111110000000000000 000001123445544443322
Q ss_pred h--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHH
Q psy200 294 D--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQ 371 (490)
Q Consensus 294 ~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e 371 (490)
. ..+...||||||+|.+....++.|..+++.. ....++|.+++. ...+.+.+++|+. .+.|.|++.++
T Consensus 90 ~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~---~~~~~~il~~~~---~~~l~~~i~sr~~----~~~~~~~~~~~ 159 (188)
T TIGR00678 90 RTPQESGRRVVIIEDAERMNEAAANALLKTLEEP---PPNTLFILITPS---PEKLLPTIRSRCQ----VLPFPPLSEEA 159 (188)
T ss_pred cCcccCCeEEEEEechhhhCHHHHHHHHHHhcCC---CCCeEEEEEECC---hHhChHHHHhhcE----EeeCCCCCHHH
Confidence 2 1245779999999999887788888887653 234445555552 2677889999985 89999999999
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 372 ILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 372 ~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
+.+++... + +++++++.+++ ...|++|.+
T Consensus 160 ~~~~l~~~----g----i~~~~~~~i~~---~~~g~~r~~ 188 (188)
T TIGR00678 160 LLQWLIRQ----G----ISEEAAELLLA---LAGGSPGAA 188 (188)
T ss_pred HHHHHHHc----C----CCHHHHHHHHH---HcCCCcccC
Confidence 99999875 1 67888999887 667887753
No 160
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.45 E-value=6.3e-12 Score=122.19 Aligned_cols=109 Identities=23% Similarity=0.276 Sum_probs=71.8
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCC-------C--hhHhhhHHhhhccCCCCeeEEeCCCCH
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANAL-------D--LTDRMLPRLQANVTLQPTLMNFAPYSR 369 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~-------~--~~~~l~~~l~~R~~~~~~~i~~~pls~ 369 (490)
|-||||||+|.|.-.....|.+.++.. -+++ +|.+||+- + .+.-+-..|.+|+- .|...||+.
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~---~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLDRll----II~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESE---LSPI-IILATNRGITKIRGTDIISPHGIPLDLLDRLL----IIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTST---T--E-EEEEES-SEEE-BTTS-EEETT--HHHHTTEE----EEEE----H
T ss_pred cceEEecchhhccHHHHHHHHHHhcCC---CCcE-EEEecCceeeeccCccCcCCCCCCcchHhhcE----EEECCCCCH
Confidence 569999999999877667777777633 2344 44556622 1 11222335667774 899999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 370 EQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 370 ~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
+|+.+|+.-++..+ ...+++++++.+.+ .+..-++|++++++.-|-
T Consensus 351 ~ei~~Il~iR~~~E--~v~i~~~al~~L~~--ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 351 EEIKQILKIRAKEE--DVEISEDALDLLTK--IGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHHHHHHHHC--T--B-HHHHHHHHH--HHHHS-HHHHHHCHHHHH
T ss_pred HHHHHHHHhhhhhh--cCcCCHHHHHHHHH--HhhhccHHHHHHhhhhhh
Confidence 99999999999998 57899999999997 456778999999886553
No 161
>KOG0732|consensus
Probab=99.45 E-value=3.1e-12 Score=138.62 Aligned_cols=249 Identities=17% Similarity=0.173 Sum_probs=167.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCC-ceEEEEeccCCCCHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDA-FKTIYINCNSVRNAA 263 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~-~~~~~v~~~~~~~~~ 263 (490)
+.+.|.+..+..|++.+...+. -.++++++++||||||||..|++++..+....+ +.+..-...
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga------ 338 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA------ 338 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc------
Confidence 7899999999999886654432 236889999999999999999999998752211 111111111
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC---HH--------HHHHhHhCCCCCCCcE
Q psy200 264 SVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK---QT--------ILYTIFEWPSIPGSKL 332 (490)
Q Consensus 264 ~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~---~~--------~L~~l~~~~~~~~~~v 332 (490)
+.-..|.|....++.-.|+++.+ ..|.|||+||||-|.... |+ .|+.+++ .....+++
T Consensus 339 --------D~lskwvgEaERqlrllFeeA~k--~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmd-GldsRgqV 407 (1080)
T KOG0732|consen 339 --------DCLSKWVGEAERQLRLLFEEAQK--TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD-GLDSRGQV 407 (1080)
T ss_pred --------hhhccccCcHHHHHHHHHHHHhc--cCceEEeccccccccccccchHHHhhhhHHHHHHHhcc-CCCCCCce
Confidence 11126777888888888887766 579999999999887553 22 3344443 23357899
Q ss_pred EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 333 VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
+|||+||+.+ .+++.+++ -+.....+.|.-++.+...+|+.-+-..- ...+....+..+++. +.|....-|
T Consensus 408 vvigATnRpd---a~dpaLRR-Pgrfdref~f~lp~~~ar~~Il~Ihtrkw--~~~i~~~l~~~la~~---t~gy~gaDl 478 (1080)
T KOG0732|consen 408 VVIGATNRPD---AIDPALRR-PGRFDREFYFPLPDVDARAKILDIHTRKW--EPPISRELLLWLAEE---TSGYGGADL 478 (1080)
T ss_pred EEEcccCCcc---ccchhhcC-CcccceeEeeeCCchHHHHHHHHHhccCC--CCCCCHHHHHHHHHh---ccccchHHH
Confidence 9999999764 44555532 23223589999999999999987665544 356788888999883 444433334
Q ss_pred -HHHHHHHHHHHhccccC-----------CcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHH
Q psy200 413 -DITNHLIDLTYDNVKEN-----------GEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLAL 471 (490)
Q Consensus 413 -~ll~~a~~~a~~~~~~~-----------~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL 471 (490)
.+|..|...+.++.... .....|...+|..|+..+++.... ...+.+-|+...+++
T Consensus 479 kaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R---~~~~~s~Pl~~~~~~ 546 (1080)
T KOG0732|consen 479 KALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR---SSVIFSRPLSTYLKP 546 (1080)
T ss_pred HHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc---cccCCCCCCCcceec
Confidence 48888888887665433 123348889999999998876552 245555555544433
No 162
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.44 E-value=1.5e-12 Score=137.29 Aligned_cols=225 Identities=12% Similarity=0.146 Sum_probs=147.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+.++|....+.++.+.+... ......|+|+|++||||+++|+++.... ....-+++.+||..+.. ..+-..++...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~--A~~~~pvlI~GE~GtGK~~lA~aiH~~s-~r~~~pfv~inca~~~~-~~~e~elFG~~ 279 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKL--AMLDAPLLITGDTGTGKDLLAYACHLRS-PRGKKPFLALNCASIPD-DVVESELFGHA 279 (520)
T ss_pred cceeECCHHHHHHHHHHHHH--hCCCCCEEEECCCCccHHHHHHHHHHhC-CCCCCCeEEeccccCCH-HHHHHHhcCCC
Confidence 68999999988888888764 3457789999999999999999986543 23445789999998752 22222332211
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCC--Ch
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANAL--DL 343 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~--~~ 343 (490)
...+.+.. ......|.. .. .-+||||||+.|....|..|..+++.... ....+.+|++++.. ++
T Consensus 280 ~~~~~~~~-~~~~g~~e~--a~---~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l 353 (520)
T PRK10820 280 PGAYPNAL-EGKKGFFEQ--AN---GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 353 (520)
T ss_pred CCCcCCcc-cCCCChhhh--cC---CCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHH
Confidence 11111110 000111221 11 22899999999999989888888764311 12456777777532 11
Q ss_pred hH--hhhHHhhhccCCCCeeEEeCCCCH--HHHHHHHHHHHhcc----CC-CCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 344 TD--RMLPRLQANVTLQPTLMNFAPYSR--EQILEIISQKLKQT----DK-FNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 344 ~~--~l~~~l~~R~~~~~~~i~~~pls~--~e~~~il~~~l~~~----~~-~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
.. .+.+.+..|+.. ..|.++|+.. +++..++.+++... +. ...+++++++.+.. +.|.||+|++-++
T Consensus 354 ~~~g~f~~dL~~rL~~--~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~--y~WPGNvreL~nv 429 (520)
T PRK10820 354 VQKGEFREDLYYRLNV--LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR--YGWPGNVRQLKNA 429 (520)
T ss_pred HHcCCccHHHHhhcCe--eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhc--CCCCCHHHHHHHH
Confidence 11 234567777653 4788999974 56776665555433 22 34689999999987 7899999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEV 440 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v 440 (490)
+.+|+..+.. ..|+.+++
T Consensus 430 l~~a~~~~~~--------~~i~~~~~ 447 (520)
T PRK10820 430 IYRALTQLEG--------YELRPQDI 447 (520)
T ss_pred HHHHHHhCCC--------CcccHHHc
Confidence 9999876542 24666664
No 163
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.44 E-value=3.3e-12 Score=140.15 Aligned_cols=212 Identities=17% Similarity=0.267 Sum_probs=143.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-----cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN-----NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~-----~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
+.++|+++.++.|...+..... ..+.+.++++||+|||||.+|+.+++.+. ..++.++++.+...... ..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~----~~~~~~d~se~~~~~~~-~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG----VHLERFDMSEYMEKHTV-SR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc----CCeEEEeCchhhhcccH-HH
Confidence 8899999999999998875321 11334689999999999999999999884 46788887765432211 11
Q ss_pred HHHHhcCC--CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEec
Q psy200 269 IVNELKLK--PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVA 338 (490)
Q Consensus 269 i~~~l~~~--~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~t 338 (490)
+ ++.+ +.|... ...+.+++.. ....|||||||+.+....++.|+++++.... .-.+.++|+++
T Consensus 529 l---ig~~~gyvg~~~---~~~l~~~~~~-~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 529 L---IGAPPGYVGFEQ---GGLLTEAVRK-HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred H---hcCCCCCcccch---hhHHHHHHHh-CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 1 1211 112111 1233344433 3457999999999988888899988874421 12357788888
Q ss_pred CCC--C--------------------hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-------CCCCCC
Q psy200 339 NAL--D--------------------LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-------DKFNMF 389 (490)
Q Consensus 339 n~~--~--------------------~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-------~~~~~~ 389 (490)
|.- . +...+.|.|..|+. .++.|.|++.+++.+|+...+... +....+
T Consensus 602 n~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid---~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i 678 (731)
T TIGR02639 602 NAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLD---AIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLEL 678 (731)
T ss_pred CcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCC---eEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence 731 0 01123466777887 589999999999999998877542 335678
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy200 390 NASALQLLAGKVAAVSGDIRKAIDITNHLID 420 (490)
Q Consensus 390 ~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~ 420 (490)
++++++.|+++.+....+.|.+-.+++..+.
T Consensus 679 ~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~ 709 (731)
T TIGR02639 679 TDDAKKYLAEKGYDEEFGARPLARVIQEEIK 709 (731)
T ss_pred CHHHHHHHHHhCCCcccCchHHHHHHHHHhH
Confidence 9999999998655555566766655555443
No 164
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.42 E-value=7.3e-12 Score=123.58 Aligned_cols=245 Identities=18% Similarity=0.205 Sum_probs=150.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC---CHHHH-HHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR---NAASV-YETI 269 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~---~~~~l-~~~i 269 (490)
..++|+++.++.+.-.+.. ...+++||+|+||+|||++++++++-+..........+++.... +.... ...+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~----~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID----PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc----cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 5689999998877654421 23478999999999999999999998731110001111111000 00000 0000
Q ss_pred HHH---hcCCCCCCcHHHHHH--HHHHHH-------hcC----CCeEEEEEecCccccccCHHHHHHhHhCCCC------
Q psy200 270 VNE---LKLKPGGKSERHQLG--AILKYF-------DTK----HKSILLILDEIDALESRKQTILYTIFEWPSI------ 327 (490)
Q Consensus 270 ~~~---l~~~~~~~s~~~~~~--~l~~~l-------~~~----~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~------ 327 (490)
... +.....+.+.+.+.. .+...+ ..+ ...-+|||||++.+....|..|...++....
T Consensus 84 ~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G 163 (334)
T PRK13407 84 IERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREG 163 (334)
T ss_pred cccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECC
Confidence 000 000001111111111 011111 100 1113899999999999999999888864431
Q ss_pred ----CCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCH-HHHHHHHHHHHhcc-------------------
Q psy200 328 ----PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSR-EQILEIISQKLKQT------------------- 383 (490)
Q Consensus 328 ----~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~-~e~~~il~~~l~~~------------------- 383 (490)
...+++++++.|..+ ..+.+.+..||.+ .+.+.++.. ++..+++.......
T Consensus 164 ~~~~~p~rfiviAt~NP~e--~~l~~aLldRF~~---~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (334)
T PRK13407 164 LSIRHPARFVLVGSGNPEE--GELRPQLLDRFGL---SVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRG 238 (334)
T ss_pred eEEecCCCEEEEecCCccc--CCCCHHHHhhcce---EEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHH
Confidence 346889999888543 2356678889885 677777765 67677776543210
Q ss_pred --------CCCCCCCHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 384 --------DKFNMFNASALQLLAGKVAAVS-GDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 384 --------~~~~~~~~~~i~~i~~~i~~~~-Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
-....++++.++++++.+.... .+.|..+.+++.|...|..++ ...|+.+||..+..-+...+.
T Consensus 239 ~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~G-----r~~V~~~Di~~~~~~vl~hR~ 311 (334)
T PRK13407 239 RILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEG-----AEAVGRSHLRSVATMALSHRL 311 (334)
T ss_pred HHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcC-----CCeeCHHHHHHHHHHhhhhhc
Confidence 1235678888998888665554 478888889999999999999 779999999998877776655
No 165
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.42 E-value=3.6e-12 Score=139.30 Aligned_cols=215 Identities=16% Similarity=0.239 Sum_probs=145.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
.+++|+...+..+.+.+... .....+|+|+|++|||||++|++++.... ..+.+++.++|.... ...+-..++...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~--a~~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~~~~~v~i~c~~~~-~~~~~~~lfg~~ 451 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMV--AQSDSTVLILGETGTGKELIARAIHNLSG-RNNRRMVKMNCAAMP-AGLLESDLFGHE 451 (686)
T ss_pred cceeecCHHHHHHHHHHHHH--hCCCCCEEEECCCCcCHHHHHHHHHHhcC-CCCCCeEEEecccCC-hhHhhhhhcCcc
Confidence 57999999999998888764 34567999999999999999999977642 345689999999874 233333333322
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
...+.+.... ....+. ... .-+||||||+.|....|..|..+++.... ....+.+|++++.. +..
T Consensus 452 ~~~~~g~~~~-~~g~le--~a~---~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~-l~~ 524 (686)
T PRK15429 452 RGAFTGASAQ-RIGRFE--LAD---KSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD-LKK 524 (686)
T ss_pred cccccccccc-hhhHHH--hcC---CCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC-HHH
Confidence 2222221111 112222 111 23999999999999989988888754321 12467788877632 211
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CCC-CCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DKF-NMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~~-~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+...+..|+.. ..|.++|+. .+|+..++.+++.+. +.. ..+++++++.+.. +.|.||+|++-+
T Consensus 525 ~~~~~~f~~~L~~~l~~--~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~--y~WPGNvrEL~~ 600 (686)
T PRK15429 525 MVADREFRSDLYYRLNV--FPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSN--MEWPGNVRELEN 600 (686)
T ss_pred HHHcCcccHHHHhccCe--eEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh--CCCCCcHHHHHH
Confidence 233446666543 468899987 467777777665543 222 2489999999987 899999999999
Q ss_pred HHHHHHHHHH
Q psy200 414 ITNHLIDLTY 423 (490)
Q Consensus 414 ll~~a~~~a~ 423 (490)
++++++..+.
T Consensus 601 ~i~~a~~~~~ 610 (686)
T PRK15429 601 VIERAVLLTR 610 (686)
T ss_pred HHHHHHHhCC
Confidence 9999987654
No 166
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=2.6e-11 Score=119.29 Aligned_cols=203 Identities=14% Similarity=0.252 Sum_probs=128.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCC--------------ceEEEEeccCC
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDA--------------FKTIYINCNSV 259 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~--------------~~~~~v~~~~~ 259 (490)
++++|++..++.|...+.. +.-++.+|++||.|+||+++|.++++.+..... -.+.++.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~---~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~ 80 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQ---NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred HHhCCHHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence 5799999999999998864 345789999999999999999999998753220 01222221100
Q ss_pred CCHHHHHHHHHHHhcC--C-CCCCcHHHHHHHHHHHHhc---CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 260 RNAASVYETIVNELKL--K-PGGKSERHQLGAILKYFDT---KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 260 ~~~~~l~~~i~~~l~~--~-~~~~s~~~~~~~l~~~l~~---~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
.....+-.......+. . ......+++++.. +.+.. .+...|+|||++|.|....++.|+.+++.+. .. +
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~-~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp--~~--~ 155 (314)
T PRK07399 81 HQGKLITASEAEEAGLKRKAPPQIRLEQIREIK-RFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG--NG--T 155 (314)
T ss_pred ccccccchhhhhhccccccccccCcHHHHHHHH-HHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC--CC--e
Confidence 0000000000011110 0 0112234444332 22221 2456799999999999888899999888653 23 3
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
+|.+++ -.+++++.+++||. .+.|.+++.+++.++|....... ..+ .....++. ...|+++.+++
T Consensus 156 fILi~~---~~~~Ll~TI~SRcq----~i~f~~l~~~~~~~~L~~~~~~~----~~~-~~~~~l~~---~a~Gs~~~al~ 220 (314)
T PRK07399 156 LILIAP---SPESLLPTIVSRCQ----IIPFYRLSDEQLEQVLKRLGDEE----ILN-INFPELLA---LAQGSPGAAIA 220 (314)
T ss_pred EEEEEC---ChHhCcHHHHhhce----EEecCCCCHHHHHHHHHHhhccc----cch-hHHHHHHH---HcCCCHHHHHH
Confidence 444454 25788999999995 89999999999999999864322 111 11344443 67899999998
Q ss_pred HHHHHH
Q psy200 414 ITNHLI 419 (490)
Q Consensus 414 ll~~a~ 419 (490)
+++...
T Consensus 221 ~l~~~~ 226 (314)
T PRK07399 221 NIEQLQ 226 (314)
T ss_pred HHHHHH
Confidence 776543
No 167
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.41 E-value=3e-12 Score=127.72 Aligned_cols=182 Identities=20% Similarity=0.266 Sum_probs=120.3
Q ss_pred CCCChHHHHHHHHHHHHhhhccCCCC-eEEEECCCCCcHHHHHHHHHHHhhhcC--------------------CceEEE
Q psy200 195 ELPGREVQLEGIRQFLLGHVNNETSG-SMYISGPPGTGKSASLNLLVSRAEIKD--------------------AFKTIY 253 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~~~~~~~~~~-~ill~GppGtGKTtla~~l~~~l~~~~--------------------~~~~~~ 253 (490)
++++.+..+.++..++..+ +... .++|+||+|+|||++|.++++.+.... ...+++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred CcccchhHHHHHHHHHHhc---CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 5788888888888888742 3344 499999999999999999999986322 124555
Q ss_pred EeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCc
Q psy200 254 INCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSK 331 (490)
Q Consensus 254 v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~ 331 (490)
++.+...... ...+.+.+........ .++..||||||+|.|....++++...++. +..+
T Consensus 79 l~~s~~~~~~----------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe---p~~~ 139 (325)
T COG0470 79 LNPSDLRKID----------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE---PPKN 139 (325)
T ss_pred ecccccCCCc----------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc---CCCC
Confidence 5544432210 1122232222222222 25677999999999999888888888774 3456
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
..+|.++| ....+.+.+++||. .+.|.|++......... ++.+..+.. ...||+|.+
T Consensus 140 ~~~il~~n---~~~~il~tI~SRc~----~i~f~~~~~~~~i~~~e-------------~~~l~~i~~---~~~gd~r~~ 196 (325)
T COG0470 140 TRFILITN---DPSKILPTIRSRCQ----RIRFKPPSRLEAIAWLE-------------DQGLEEIAA---VAEGDARKA 196 (325)
T ss_pred eEEEEEcC---Chhhccchhhhcce----eeecCCchHHHHHHHhh-------------ccchhHHHH---HHHHHHHcC
Confidence 66666677 46778889999996 89999943332222211 344455544 577888888
Q ss_pred HHHHHHHHHH
Q psy200 412 IDITNHLIDL 421 (490)
Q Consensus 412 i~ll~~a~~~ 421 (490)
++.++.+...
T Consensus 197 i~~lq~~~~~ 206 (325)
T COG0470 197 INPLQALAAL 206 (325)
T ss_pred CCHHHHHHHh
Confidence 8877665443
No 168
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.41 E-value=4.1e-12 Score=140.44 Aligned_cols=215 Identities=18% Similarity=0.251 Sum_probs=142.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc----C-CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN----E-TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~----~-~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
..++|++..++.+.+.+.....+ . +.+.++++||+|+|||.+|+++++.+.. ..-.++.++++.+....... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~-~~~~~~~~dmse~~~~~~~~-~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG-GEQNLITINMSEFQEAHTVS-R 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC-CCcceEEEeHHHhhhhhhhc-c
Confidence 88999999999999998764221 1 2245899999999999999999998842 22356777766653322111 1
Q ss_pred HHHHhcCC--CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCC--------CCcEEEEEec
Q psy200 269 IVNELKLK--PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIP--------GSKLVLVGVA 338 (490)
Q Consensus 269 i~~~l~~~--~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~--------~~~vilI~~t 338 (490)
+ ++.+ +.|... ...|.+++.. ....||+||||+.+....++.|+++++..... -.+.++|+++
T Consensus 644 l---~g~~~gyvg~~~---~g~L~~~v~~-~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 644 L---KGSPPGYVGYGE---GGVLTEAVRR-KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred c---cCCCCCcccccc---cchHHHHHHh-CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 1 1211 112111 1123344443 45679999999998887788888888754311 1467888888
Q ss_pred CCC---------C-----------------hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--------C
Q psy200 339 NAL---------D-----------------LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--------D 384 (490)
Q Consensus 339 n~~---------~-----------------~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--------~ 384 (490)
|.- + +...+.+.|.+|+. .+.|.|++.+++.+|+...+... +
T Consensus 717 Nlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~----iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~g 792 (852)
T TIGR03345 717 NAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT----VIPYLPLDDDVLAAIVRLKLDRIARRLKENHG 792 (852)
T ss_pred CCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee----EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 821 0 00113466777774 79999999999999988766542 3
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy200 385 KFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDL 421 (490)
Q Consensus 385 ~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~ 421 (490)
....+++++++.|++..+....|.|.+.++++.-+..
T Consensus 793 i~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~ 829 (852)
T TIGR03345 793 AELVYSEALVEHIVARCTEVESGARNIDAILNQTLLP 829 (852)
T ss_pred ceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 3456899999999984333334788888877775543
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.41 E-value=7.3e-12 Score=139.42 Aligned_cols=218 Identities=17% Similarity=0.209 Sum_probs=146.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc-----CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN-----ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~-----~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
..++|++..++.|...+.....+ .+...++|+||+|||||++|+++++.+.. ....+++++|+.+..... ...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~-~~~~~i~~d~s~~~~~~~-~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD-DEDAMVRIDMSEYMEKHS-VAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC-CCCcEEEEechhhcccch-HHH
Confidence 78999999999999999864321 13457889999999999999999988742 334778888887643222 122
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCC
Q psy200 269 IVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANA 340 (490)
Q Consensus 269 i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~ 340 (490)
++ +.+.......+ ...|.+.+.. ....|||||||+.+....++.|+++++.... .-.+.+||+++|.
T Consensus 643 l~---g~~~g~~g~~~-~g~l~~~v~~-~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 643 LI---GAPPGYVGYEE-GGQLTEAVRR-KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred hc---CCCCCccCccc-ccHHHHHHHc-CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 21 11111011111 1223333333 3346999999999998888999998865421 1245678888884
Q ss_pred C-----C-----------------hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-------CCCCCCCH
Q psy200 341 L-----D-----------------LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-------DKFNMFNA 391 (490)
Q Consensus 341 ~-----~-----------------~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-------~~~~~~~~ 391 (490)
- + +...+.+.|..|+. .++.|.|++.+++.+|+...+... +....+++
T Consensus 718 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid---~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~ 794 (852)
T TIGR03346 718 GSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRID---EIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSD 794 (852)
T ss_pred chHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcC---eEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCH
Confidence 1 1 01112356667776 589999999999998877665432 23467899
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy200 392 SALQLLAGKVAAVSGDIRKAIDITNHLIDL 421 (490)
Q Consensus 392 ~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~ 421 (490)
++++.|++.-+...+++|.+-+++++.+..
T Consensus 795 ~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 795 AALDFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 999999984434478999888887777644
No 170
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.41 E-value=2.2e-11 Score=120.43 Aligned_cols=244 Identities=18% Similarity=0.189 Sum_probs=158.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|+++.+..|...+. ....++++|.|++|||||++++.+++.+....-...-.++|... ++..+...+....
T Consensus 17 ~~ivGq~~~k~al~~~~~----~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~-~p~~~~~~~~~~~ 91 (350)
T CHL00081 17 TAIVGQEEMKLALILNVI----DPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS-DPELMSDEVREAI 91 (350)
T ss_pred HHHhChHHHHHHHHHhcc----CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC-Chhhhchhhhhhh
Confidence 678999988877766654 35567899999999999999999988775221110001122222 2222222222111
Q ss_pred c-----------CC----CCCCcHHHHHHH--HHHHHhcC-----------CCeEEEEEecCccccccCHHHHHHhHhCC
Q psy200 274 K-----------LK----PGGKSERHQLGA--ILKYFDTK-----------HKSILLILDEIDALESRKQTILYTIFEWP 325 (490)
Q Consensus 274 ~-----------~~----~~~~s~~~~~~~--l~~~l~~~-----------~~~~vI~IDEid~l~~~~~~~L~~l~~~~ 325 (490)
. .+ ..+.+.+.++.- +...+..+ ...-+|+|||++.+....|..|...++..
T Consensus 92 ~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~ 171 (350)
T CHL00081 92 QNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG 171 (350)
T ss_pred cccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 0 00 112233332221 11111110 11239999999999999999988887542
Q ss_pred C----------CCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCC-HHHHHHHHHHHHhcc-----------
Q psy200 326 S----------IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYS-REQILEIISQKLKQT----------- 383 (490)
Q Consensus 326 ~----------~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls-~~e~~~il~~~l~~~----------- 383 (490)
. ....++++|++.|..+ ..+.+.+..||.+ .+.+..++ .++..+++.+.....
T Consensus 172 ~~~ier~G~s~~~p~rfiviaT~np~e--g~l~~~LldRf~l---~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~ 246 (350)
T CHL00081 172 WNTVEREGISIRHPARFVLVGSGNPEE--GELRPQLLDRFGM---HAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYE 246 (350)
T ss_pred CeEEeeCCeeeecCCCEEEEeccCccc--CCCCHHHHHHhCc---eeecCCCCChHHHHHHHHhhhccccChhhhhhhhc
Confidence 1 1246788888888542 2466788889986 68888887 477777776643210
Q ss_pred ----------------CCCCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 384 ----------------DKFNMFNASALQLLAGKVAAVSG-DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 384 ----------------~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
-....+++..++.|++.+....- +.|..|.+++-|..+|..+| ...|+.+||..++.-
T Consensus 247 ~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~G-----R~~V~pdDv~~~a~~ 321 (350)
T CHL00081 247 ESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEG-----RTEVTPKDIFKVITL 321 (350)
T ss_pred cccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHH
Confidence 13456888899988886655442 68888999999999999999 789999999999999
Q ss_pred hccCcc
Q psy200 447 VYCTSQ 452 (490)
Q Consensus 447 ~~~~~~ 452 (490)
++.++.
T Consensus 322 vL~HR~ 327 (350)
T CHL00081 322 CLRHRL 327 (350)
T ss_pred HHHHhC
Confidence 887776
No 171
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.41 E-value=1.4e-12 Score=130.11 Aligned_cols=214 Identities=17% Similarity=0.229 Sum_probs=143.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|+...+.++.+.+.- -....-.|||.|+.||||-.+|++|.+ +....+-+++++||..+.. .-+-++++..-
T Consensus 223 ~~iIG~S~am~~ll~~i~~--VA~Sd~tVLi~GETGtGKElvAraIH~-~S~R~~kPfV~~NCAAlPe-sLlESELFGHe 298 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEV--VAKSDSTVLIRGETGTGKELVARAIHQ-LSPRRDKPFVKLNCAALPE-SLLESELFGHE 298 (550)
T ss_pred ccceecCHHHHHHHHHHHH--HhcCCCeEEEecCCCccHHHHHHHHHh-hCcccCCCceeeeccccch-HHHHHHHhccc
Confidence 6899999999999998875 345678999999999999999999955 4444555899999999742 11223333333
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
.+.+.|.... -...|+ +..+| .||+|||..|.-.-|..|...++.... -...|.+|++||+. +..
T Consensus 299 KGAFTGA~~~-r~GrFE--lAdGG---TLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRD-L~~ 371 (550)
T COG3604 299 KGAFTGAINT-RRGRFE--LADGG---TLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRD-LEE 371 (550)
T ss_pred ccccccchhc-cCccee--ecCCC---eEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchh-HHH
Confidence 3333222110 001111 11122 899999999998888877777654422 24567899999943 222
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHh----ccCC-CCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLK----QTDK-FNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~----~~~~-~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
++-..++.|+.. ..|.++|+- .+++--+..+++. +.+. ...+++++++.+.+ +.|.||+|.+.+
T Consensus 372 ~V~~G~FRaDLYyRLsV--~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~--y~wPGNVRELen 447 (550)
T COG3604 372 MVRDGEFRADLYYRLSV--FPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS--YEWPGNVRELEN 447 (550)
T ss_pred HHHcCcchhhhhhcccc--cccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc--CCCCCcHHHHHH
Confidence 233456667664 256677775 3344433333332 2243 57799999999998 889999999999
Q ss_pred HHHHHHHHH
Q psy200 414 ITNHLIDLT 422 (490)
Q Consensus 414 ll~~a~~~a 422 (490)
++++|+.+|
T Consensus 448 ~veRavlla 456 (550)
T COG3604 448 VVERAVLLA 456 (550)
T ss_pred HHHHHHHHh
Confidence 999999988
No 172
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.41 E-value=9.5e-12 Score=125.65 Aligned_cols=215 Identities=17% Similarity=0.240 Sum_probs=133.6
Q ss_pred HhhcCCCCCCChHHHHHHHHHHHHhhhcc------C--------CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEE
Q psy200 188 EKAKDSCELPGREVQLEGIRQFLLGHVNN------E--------TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIY 253 (490)
Q Consensus 188 ~~~l~~~~lvgre~~~~~l~~~L~~~~~~------~--------~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~ 253 (490)
...|. +.++|+++.++.|...+.+.... . ...+++|+||+|+|||++|+.++..+. .+++.
T Consensus 72 ~~~L~-~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~----~pf~~ 146 (413)
T TIGR00382 72 KAHLD-EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN----VPFAI 146 (413)
T ss_pred HHHhc-ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC----CCeEE
Confidence 33444 78999999999998777432211 1 136899999999999999999998874 55666
Q ss_pred EeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----HhcCCCeEEEEEecCccccc--------------cCH
Q psy200 254 INCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKY----FDTKHKSILLILDEIDALES--------------RKQ 315 (490)
Q Consensus 254 v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~----l~~~~~~~vI~IDEid~l~~--------------~~~ 315 (490)
+++..+.. ..+.|.........+... +.. ..+.+|||||+|.+.. .-|
T Consensus 147 ~da~~L~~-------------~gyvG~d~e~~L~~~~~~~~~~l~~-a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq 212 (413)
T TIGR00382 147 ADATTLTE-------------AGYVGEDVENILLKLLQAADYDVEK-AQKGIIYIDEIDKISRKSENPSITRDVSGEGVQ 212 (413)
T ss_pred echhhccc-------------cccccccHHHHHHHHHHhCcccHHh-cccceEEecccchhchhhccccccccccchhHH
Confidence 66654311 012333332222221111 111 2345999999999975 236
Q ss_pred HHHHHhHhCCC----------CCCCcEEEEEecCCC-----------------------C--------------hh----
Q psy200 316 TILYTIFEWPS----------IPGSKLVLVGVANAL-----------------------D--------------LT---- 344 (490)
Q Consensus 316 ~~L~~l~~~~~----------~~~~~vilI~~tn~~-----------------------~--------------~~---- 344 (490)
..|+++++-.. .....+++|.++|-. . +.
T Consensus 213 ~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 213 QALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 67777764111 112345566555530 0 00
Q ss_pred -----H-hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHH----Hh-------ccCCCCCCCHHHHHHHHHHHHHhhCC
Q psy200 345 -----D-RMLPRLQANVTLQPTLMNFAPYSREQILEIISQK----LK-------QTDKFNMFNASALQLLAGKVAAVSGD 407 (490)
Q Consensus 345 -----~-~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~----l~-------~~~~~~~~~~~~i~~i~~~i~~~~Gd 407 (490)
. .+.|.|..|+. .++.|.|++.+++.+|+... +. ..+....+++++++.|++..+...-+
T Consensus 293 ~~dl~~~g~~PEflgRld---~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~G 369 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLP---VIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTG 369 (413)
T ss_pred HHHHHHHhhHHHHhCCCC---eEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCC
Confidence 0 13466667776 47899999999999998653 22 12455678999999999865555566
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy200 408 IRKAIDITNHLIDLTYD 424 (490)
Q Consensus 408 ~r~ai~ll~~a~~~a~~ 424 (490)
.|.+-.++++.+.-...
T Consensus 370 AR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 370 ARGLRSIVEGLLLDVMF 386 (413)
T ss_pred chHHHHHHHHhhHHHHh
Confidence 77776677776654443
No 173
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.40 E-value=1.3e-12 Score=141.81 Aligned_cols=225 Identities=17% Similarity=0.202 Sum_probs=152.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+.++|....+.++.+.+.... .....|+|+|++||||+++|+++++... ..+-+|+.+||..+.. ..+..+++...
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a--~~~~pvli~Ge~GtGK~~~A~~ih~~s~-r~~~pfv~vnc~~~~~-~~~~~elfg~~ 400 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA--KSSFPVLLCGEEGVGKALLAQAIHNESE-RAAGPYIAVNCQLYPD-EALAEEFLGSD 400 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh--CcCCCEEEECCCCcCHHHHHHHHHHhCC-ccCCCeEEEECCCCCh-HHHHHHhcCCC
Confidence 679999999999888888753 4566799999999999999999977642 2345889999998843 33333333222
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCC--------CCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIP--------GSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~--------~~~vilI~~tn~~~~~~ 345 (490)
. +.........|.. . ..-+||||||+.|....|..|..+++..... ...+.+|++++.. +..
T Consensus 401 ~----~~~~~~~~g~~~~--a---~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~-l~~ 470 (638)
T PRK11388 401 R----TDSENGRLSKFEL--A---HGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD-LAM 470 (638)
T ss_pred C----cCccCCCCCceeE--C---CCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC-HHH
Confidence 1 1100000001111 1 1238999999999999999998888644211 1256788887632 211
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCCH--HHHHHHHHHHHhcc----CCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYSR--EQILEIISQKLKQT----DKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls~--~e~~~il~~~l~~~----~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
.+.+.+..|+.. ..|.++|+.. +|+..++.+++... +....+++++++.+.+ +.|.||+|++.++
T Consensus 471 ~~~~~~f~~dL~~~l~~--~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~--y~WPGNvreL~~~ 546 (638)
T PRK11388 471 LVEQNRFSRQLYYALHA--FEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS--YRWPGNDFELRSV 546 (638)
T ss_pred HHhcCCChHHHhhhhce--eEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc--CCCCChHHHHHHH
Confidence 233456666543 4788999974 57777777766543 2234689999999998 8899999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
+++++..+. + ..|+.+++...+
T Consensus 547 l~~~~~~~~--~------~~i~~~~lp~~~ 568 (638)
T PRK11388 547 IENLALSSD--N------GRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHhCC--C------CeecHHHCchhh
Confidence 999886542 2 358888876555
No 174
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=2.7e-11 Score=120.12 Aligned_cols=180 Identities=15% Similarity=0.144 Sum_probs=121.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC----CceEEEEeccCCCCHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD----AFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~----~~~~~~v~~~~~~~~~~l~~~i 269 (490)
++++|++..++.+..++.. +.-++.++++||.|+|||++|+.+++.+.+.. ...+..+....
T Consensus 4 ~~i~g~~~~~~~l~~~~~~---~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~----------- 69 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIK---NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN----------- 69 (313)
T ss_pred hhccCcHHHHHHHHHHHHc---CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-----------
Confidence 6789999999999888863 34556778999999999999999999874221 11222332110
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhh
Q psy200 270 VNELKLKPGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRM 347 (490)
Q Consensus 270 ~~~l~~~~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l 347 (490)
....+.+++++.+...... .++..|+|||++|.|....++.|...++.+ ....++|.+++ -.+.+
T Consensus 70 -------~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep---p~~t~~il~~~---~~~~l 136 (313)
T PRK05564 70 -------KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP---PKGVFIILLCE---NLEQI 136 (313)
T ss_pred -------CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC---CCCeEEEEEeC---ChHhC
Confidence 1112345555544432211 245679999999999988888888887743 33444444443 24688
Q ss_pred hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 348 LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 348 ~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+.+++||. .+.|.+++.+++..++...+. .++++.++.++. ...|....++.
T Consensus 137 l~TI~SRc~----~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~l~~---~~~g~~~~a~~ 189 (313)
T PRK05564 137 LDTIKSRCQ----IYKLNRLSKEEIEKFISYKYN------DIKEEEKKSAIA---FSDGIPGKVEK 189 (313)
T ss_pred cHHHHhhce----eeeCCCcCHHHHHHHHHHHhc------CCCHHHHHHHHH---HcCCCHHHHHH
Confidence 899999995 899999999999998877543 246666666654 33444665554
No 175
>KOG0742|consensus
Probab=99.39 E-value=1.7e-11 Score=118.94 Aligned_cols=164 Identities=16% Similarity=0.275 Sum_probs=104.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhc----cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN----NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~----~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
+.++-+-....+|..+.....+ ....++|++|||||||||+.++.++.+-+ ..+..+.+...
T Consensus 355 ~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG----lDYA~mTGGDV---------- 420 (630)
T KOG0742|consen 355 EGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG----LDYAIMTGGDV---------- 420 (630)
T ss_pred CCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC----CceehhcCCCc----------
Confidence 4556554444444444332211 22557999999999999999999998754 44444443332
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC---------HHHHHHhHhCCCCCCCcEEEEEecCC
Q psy200 270 VNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK---------QTILYTIFEWPSIPGSKLVLVGVANA 340 (490)
Q Consensus 270 ~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~---------~~~L~~l~~~~~~~~~~vilI~~tn~ 340 (490)
...|...-.....+-+..++..+-++|||||+|.+.... ...|..++=........|+++.++|.
T Consensus 421 ------APlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNr 494 (630)
T KOG0742|consen 421 ------APLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNR 494 (630)
T ss_pred ------cccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCC
Confidence 111111222223333444555778999999999986442 23444433222234557888888985
Q ss_pred CChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc
Q psy200 341 LDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT 383 (490)
Q Consensus 341 ~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~ 383 (490)
+..++..+.+|+. ..+.|+-+..+|..++|..++.++
T Consensus 495 ---pgdlDsAV~DRid---e~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 495 ---PGDLDSAVNDRID---EVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred ---ccchhHHHHhhhh---heeecCCCChHHHHHHHHHHHHHH
Confidence 3455667777877 689999999999999999888776
No 176
>KOG0744|consensus
Probab=99.38 E-value=1.1e-11 Score=117.02 Aligned_cols=171 Identities=19% Similarity=0.306 Sum_probs=118.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC----------CCCeEEEECCCCCcHHHHHHHHHHHhhhc--CC---ceEEEEeccC
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE----------TSGSMYISGPPGTGKSASLNLLVSRAEIK--DA---FKTIYINCNS 258 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~----------~~~~ill~GppGtGKTtla~~l~~~l~~~--~~---~~~~~v~~~~ 258 (490)
+.++.-.+.+++|..+....+.-. -.+.++++||||||||+|++++++.+... .. -..+++||..
T Consensus 142 EsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs 221 (423)
T KOG0744|consen 142 ESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS 221 (423)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH
Confidence 345555566667777665443211 34689999999999999999999998632 11 2466776544
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH---------------HH-HHHhH
Q psy200 259 VRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ---------------TI-LYTIF 322 (490)
Q Consensus 259 ~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~---------------~~-L~~l~ 322 (490)
+++.++.+ .|.-...+++.+.+.++..+.-++++|||++.|...+. ++ |.++-
T Consensus 222 ------LFSKWFsE-----SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744|consen 222 ------LFSKWFSE-----SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred ------HHHHHHhh-----hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Confidence 34433322 23346667778888887778899999999999964431 12 22222
Q ss_pred hCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc
Q psy200 323 EWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT 383 (490)
Q Consensus 323 ~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~ 383 (490)
.+ ....+|++++++| +.+.++-++.+|.+. ..++.|++...+.+|++..+...
T Consensus 291 rl--K~~~NvliL~TSN---l~~siD~AfVDRADi---~~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 291 RL--KRYPNVLILATSN---LTDSIDVAFVDRADI---VFYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred Hh--ccCCCEEEEeccc---hHHHHHHHhhhHhhh---eeecCCccHHHHHHHHHHHHHHH
Confidence 22 2356788888888 778888888899875 78899999999999998776554
No 177
>KOG0735|consensus
Probab=99.38 E-value=2.1e-11 Score=125.65 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=139.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc--
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT-- 295 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~-- 295 (490)
..++++|+|++|+|||.|++++++++..+..+.+.+++|+... +.+.+.+.+.+...+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~------------------~~~~e~iQk~l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLD------------------GSSLEKIQKFLNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhcc------------------chhHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999986666688889998763 23455555555555533
Q ss_pred CCCeEEEEEecCccccccC-----H---------HHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhh--ccCCCC
Q psy200 296 KHKSILLILDEIDALESRK-----Q---------TILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQA--NVTLQP 359 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~~-----~---------~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~--R~~~~~ 359 (490)
...|.||++|++|.|.+.. | ..|++++......+..+.||++.+.. ..+.+.+.+ +|.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~---qtl~~~L~s~~~Fq--- 565 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQEL---QTLNPLLVSPLLFQ--- 565 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhh---hhcChhhcCccceE---
Confidence 2568999999999998731 1 23333333333355677888888743 222332222 344
Q ss_pred eeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHhccccCCcccccCHH
Q psy200 360 TLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGD-IRKAIDITNHLIDLTYDNVKENGEVTGIGLK 438 (490)
Q Consensus 360 ~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd-~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~ 438 (490)
..+.++++...+..+||.+.+.+.. .....+.++.++. .+.|- ++.+.-++++|+..|..+.-... ...++.+
T Consensus 566 ~~~~L~ap~~~~R~~IL~~~~s~~~--~~~~~~dLd~ls~---~TEGy~~~DL~ifVeRai~~a~leris~~-~klltke 639 (952)
T KOG0735|consen 566 IVIALPAPAVTRRKEILTTIFSKNL--SDITMDDLDFLSV---KTEGYLATDLVIFVERAIHEAFLERISNG-PKLLTKE 639 (952)
T ss_pred EEEecCCcchhHHHHHHHHHHHhhh--hhhhhHHHHHHHH---hcCCccchhHHHHHHHHHHHHHHHHhccC-cccchHH
Confidence 5899999999999999999998762 3345666777765 44453 44444578888877773321111 2378899
Q ss_pred HHHHHHHHhccC
Q psy200 439 EVLGVISSVYCT 450 (490)
Q Consensus 439 ~v~~a~~~~~~~ 450 (490)
+|.+++.+..+.
T Consensus 640 ~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 640 LFEKSLKDFVPL 651 (952)
T ss_pred HHHHHHHhcChH
Confidence 999999987653
No 178
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.38 E-value=1.2e-11 Score=107.72 Aligned_cols=148 Identities=22% Similarity=0.277 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC
Q psy200 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK 276 (490)
Q Consensus 197 vgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~ 276 (490)
+|++.++..+...+.. ...++++|+|++|+|||++++.+++.+. ..+..++++++............+...
T Consensus 1 ~~~~~~~~~i~~~~~~----~~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~---- 71 (151)
T cd00009 1 VGQEEAIEALREALEL----PPPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNASDLLEGLVVAELFGHF---- 71 (151)
T ss_pred CchHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEehhhhhhhhHHHHHhhhh----
Confidence 3677777777777743 4577999999999999999999999874 234678888876653322211110000
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCC---CCcEEEEEecCCCChhHhhhHHhhh
Q psy200 277 PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIP---GSKLVLVGVANALDLTDRMLPRLQA 353 (490)
Q Consensus 277 ~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~---~~~vilI~~tn~~~~~~~l~~~l~~ 353 (490)
............++.+|+|||++.+.......+..++...... ...+.+|++++.... ..+...+.+
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~-~~~~~~~~~ 141 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL-GDLDRALYD 141 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc-CCcChhHHh
Confidence 0111111222345779999999998554455555555543321 356777777774432 355667778
Q ss_pred ccCCCCeeEEeCC
Q psy200 354 NVTLQPTLMNFAP 366 (490)
Q Consensus 354 R~~~~~~~i~~~p 366 (490)
||. ..+.+++
T Consensus 142 r~~---~~i~~~~ 151 (151)
T cd00009 142 RLD---IRIVIPL 151 (151)
T ss_pred hhc---cEeecCC
Confidence 875 2566553
No 179
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=2.6e-11 Score=119.91 Aligned_cols=244 Identities=17% Similarity=0.183 Sum_probs=152.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH--HHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA--ASVYETIVN 271 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~--~~l~~~i~~ 271 (490)
..++|+++.+..|.-.+- ....++++|.|++|+||||+++.++..+.......-...+|...... ..-+.....
T Consensus 4 ~~ivgq~~~~~al~~~~~----~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 79 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVI----DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVD 79 (337)
T ss_pred cccccHHHHHHHHHHHhc----CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhh
Confidence 468999998877655443 24567899999999999999999988763111000001111110000 000000000
Q ss_pred ---H----------hcCCCCCCcHHHHHHH--HHHHHhc-----------CCCeEEEEEecCccccccCHHHHHHhHhCC
Q psy200 272 ---E----------LKLKPGGKSERHQLGA--ILKYFDT-----------KHKSILLILDEIDALESRKQTILYTIFEWP 325 (490)
Q Consensus 272 ---~----------l~~~~~~~s~~~~~~~--l~~~l~~-----------~~~~~vI~IDEid~l~~~~~~~L~~l~~~~ 325 (490)
. ...+ .+.+.+.+... +...+.. ....-+|||||++.+....|..|...++..
T Consensus 80 ~~~~~~~~~~~~~~~~lP-~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g 158 (337)
T TIGR02030 80 SQEPLSIIKKPVPVVDLP-LGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASG 158 (337)
T ss_pred cccccccccCCCCcCCCC-CCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 0 0000 01111111111 1111100 011238999999999998899888887543
Q ss_pred C----------CCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCH-HHHHHHHHHHHhcc-----------
Q psy200 326 S----------IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSR-EQILEIISQKLKQT----------- 383 (490)
Q Consensus 326 ~----------~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~-~e~~~il~~~l~~~----------- 383 (490)
. ....++++|++.|..+ ..+.+.+.+||.+ .+.+.++.. ++..+++.......
T Consensus 159 ~~~v~r~G~~~~~~~r~iviat~np~e--g~l~~~LldRf~l---~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~ 233 (337)
T TIGR02030 159 WNVVEREGISIRHPARFVLVGSGNPEE--GELRPQLLDRFGL---HAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQ 233 (337)
T ss_pred CeEEEECCEEEEcCCCEEEEecccccc--CCCCHHHHhhcce---EEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhh
Confidence 2 1246788888887542 2466788899985 677877765 67677776632210
Q ss_pred ----------------CCCCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 384 ----------------DKFNMFNASALQLLAGKVAAVSG-DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 384 ----------------~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
-....+++++++.+++.+..... +.|..+.+++-|...|..++ ...|+.+||..++.-
T Consensus 234 ~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G-----R~~V~~dDv~~~a~~ 308 (337)
T TIGR02030 234 TEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG-----RTEVTVDDIRRVAVL 308 (337)
T ss_pred hhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHH
Confidence 13455788889998886666554 57999999999999999999 789999999999999
Q ss_pred hccCcc
Q psy200 447 VYCTSQ 452 (490)
Q Consensus 447 ~~~~~~ 452 (490)
++..+.
T Consensus 309 vL~HR~ 314 (337)
T TIGR02030 309 ALRHRL 314 (337)
T ss_pred HHHHhC
Confidence 887766
No 180
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.38 E-value=3.4e-12 Score=109.63 Aligned_cols=119 Identities=26% Similarity=0.436 Sum_probs=87.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc----CCceEEEEeccCCCCHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK----DAFKTIYINCNSVRNAASVYETIVNELKLKPGG-KSERHQLGAILKY 292 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~----~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~-~s~~~~~~~l~~~ 292 (490)
..+.++|+|++|+|||++++.+++.+... .+..+++++|....+...++..|+..++..... .+..++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35789999999999999999999987521 157889999999889999999999999876654 5778888888888
Q ss_pred HhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 293 FDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
+...+ ..+|+|||+|.+. ....+..+..+....+..++++|..+
T Consensus 83 l~~~~-~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 83 LDRRR-VVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp HHHCT-EEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESST
T ss_pred HHhcC-CeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 87643 4799999999985 24444444444445566777777664
No 181
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.38 E-value=1.3e-11 Score=136.93 Aligned_cols=214 Identities=16% Similarity=0.191 Sum_probs=139.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc----C-CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN----E-TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~----~-~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
..++|++..++.|...+.....+ . +.+.++|+||+|+|||++|+++++.+. .....+++++|..+.... ....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~-~~~~~~i~id~se~~~~~-~~~~ 645 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF-DSDDAMVRIDMSEFMEKH-SVSR 645 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh-cCCCcEEEEEhHHhhhhh-hHHH
Confidence 78999999999999999865321 1 225789999999999999999998874 223467888887653221 1112
Q ss_pred HHHHhcCC--CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEec
Q psy200 269 IVNELKLK--PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVA 338 (490)
Q Consensus 269 i~~~l~~~--~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~t 338 (490)
+ ++.+ +.|... ...+.+.+.. ....||||||++.+....++.|+++++.... .-.+.++|+++
T Consensus 646 L---iG~~pgy~g~~~---~g~l~~~v~~-~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 646 L---VGAPPGYVGYEE---GGYLTEAVRR-RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred H---hCCCCcccccch---hHHHHHHHHh-CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 2 2221 111111 1223343432 2346999999999988888999988864321 12345678888
Q ss_pred CCC-Ch-------------h--------HhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-------CCCCCC
Q psy200 339 NAL-DL-------------T--------DRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-------DKFNMF 389 (490)
Q Consensus 339 n~~-~~-------------~--------~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-------~~~~~~ 389 (490)
|.- +. . ..+.+.|..|+. ..+.|.|++.+++..|+...+... +....+
T Consensus 719 N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld---~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~i 795 (857)
T PRK10865 719 NLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRID---EVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHI 795 (857)
T ss_pred CcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCC---eeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcC
Confidence 741 10 1 113467788886 489999999999999988776542 334568
Q ss_pred CHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 390 NASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 390 ~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
++++++.|++.-+....+.|.+-+++++-+
T Consensus 796 s~~al~~L~~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 796 SDEALKLLSENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred CHHHHHHHHHcCCCccCChHHHHHHHHHHH
Confidence 999999999743333345666555555443
No 182
>KOG2680|consensus
Probab=99.37 E-value=5.5e-11 Score=111.14 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=98.7
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCC---------ChhHhhhHHhhhccCCCCeeEEeCCCCH
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANAL---------DLTDRMLPRLQANVTLQPTLMNFAPYSR 369 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~---------~~~~~l~~~l~~R~~~~~~~i~~~pls~ 369 (490)
|-||||||+|.|.-.....|...++- .-+++++ .+||+- .-+.-+--.+..|.- +|...||+.
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~---d~~Piii-maTNrgit~iRGTn~~SphGiP~D~lDR~l----II~t~py~~ 360 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALEN---DMAPIII-MATNRGITRIRGTNYRSPHGIPIDLLDRML----IISTQPYTE 360 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhh---ccCcEEE-EEcCCceEEeecCCCCCCCCCcHHHhhhhh----eeecccCcH
Confidence 66999999999976655556555542 2234444 445521 111112223444543 799999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 370 EQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 370 ~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
+++.+||..+|..+ +..+++++++.+.. .+..-.+|++++++.-+...+.++. ...+..+|+.++..-++.
T Consensus 361 ~d~~~IL~iRc~EE--dv~m~~~A~d~Lt~--i~~~tsLRYai~Lit~a~~~~~krk-----~~~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 361 EDIKKILRIRCQEE--DVEMNPDALDLLTK--IGEATSLRYAIHLITAASLVCLKRK-----GKVVEVDDIERVYRLFLD 431 (454)
T ss_pred HHHHHHHHhhhhhh--ccccCHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHhc-----CceeehhHHHHHHHHHhh
Confidence 99999999999987 67889999999986 3445689999999999998888887 678999999999887664
Q ss_pred C
Q psy200 450 T 450 (490)
Q Consensus 450 ~ 450 (490)
.
T Consensus 432 ~ 432 (454)
T KOG2680|consen 432 E 432 (454)
T ss_pred h
Confidence 3
No 183
>KOG4658|consensus
Probab=99.36 E-value=3.1e-11 Score=133.24 Aligned_cols=198 Identities=21% Similarity=0.312 Sum_probs=143.4
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh-hcCCc-eEEEEeccCCCCHHHHHHHHHHHhc
Q psy200 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE-IKDAF-KTIYINCNSVRNAASVYETIVNELK 274 (490)
Q Consensus 197 vgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~-~~~~~-~~~~v~~~~~~~~~~l~~~i~~~l~ 274 (490)
||.+..++.+...|.. ...+.+-|||.+|+|||||++.+.+... ....| .++|+..+...+...++.+|+..++
T Consensus 161 VG~e~~~~kl~~~L~~----d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLME----DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred ccHHHHHHHHHHHhcc----CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 9999999999998864 4448999999999999999999999986 56677 5778888888899999999999887
Q ss_pred CC---CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC---CCCCcEEEEEecCCCChhHhhh
Q psy200 275 LK---PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS---IPGSKLVLVGVANALDLTDRML 348 (490)
Q Consensus 275 ~~---~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~---~~~~~vilI~~tn~~~~~~~l~ 348 (490)
.. +......+....+.+.++ +++++|++||||.=.. +..+..+. ..++++++ +|...+.-...
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~--~krfllvLDDIW~~~d------w~~I~~~~p~~~~g~Kvvl--TTRs~~V~~~~- 305 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLE--GKRFLLVLDDIWEEVD------WDKIGVPFPSRENGSKVVL--TTRSEEVCGRA- 305 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhc--cCceEEEEeccccccc------HHhcCCCCCCccCCeEEEE--EeccHhhhhcc-
Confidence 63 332233566667777776 6789999999998432 33333322 22344444 44322222211
Q ss_pred HHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 349 PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 349 ~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
.+. ...+.+..++.++.|.++.+...... .-+...+..+++.++..||+++.|++++..++
T Consensus 306 ------m~~-~~~~~v~~L~~~eaW~LF~~~v~~~~---~~~~~~i~~lak~v~~kC~GLPLAl~viG~~m 366 (889)
T KOG4658|consen 306 ------MGV-DYPIEVECLTPEEAWDLFQKKVGPNT---LGSHPDIEELAKEVAEKCGGLPLALNVLGGLL 366 (889)
T ss_pred ------ccC-CccccccccCccccHHHHHHhhcccc---ccccccHHHHHHHHHHHhCChHHHHHHHHHHh
Confidence 221 23688999999999999999875541 11212389999999999999999999887764
No 184
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.4e-11 Score=131.16 Aligned_cols=216 Identities=18% Similarity=0.214 Sum_probs=148.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-----cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN-----NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~-----~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
..++|+++.+..|...+...-. ..+.+.+++.||.|+|||-||++++..+... .-..+.++.+.+.....+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-e~aliR~DMSEy~EkHsV--- 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-EQALIRIDMSEYMEKHSV--- 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-CccceeechHHHHHHHHH---
Confidence 8999999999999999986532 2245688899999999999999999998522 235677766655332222
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCC
Q psy200 269 IVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANA 340 (490)
Q Consensus 269 i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~ 340 (490)
..-++.+..-...++ -..|.+++.+ +..+||++|||+.-...-.+.|+++++-... .-.+.++|+++|-
T Consensus 567 -SrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 567 -SRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred -HHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 112233222122222 3455566654 3467999999999988888889998875422 1235688888881
Q ss_pred C---------C--------hhHh--------hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-------CCCCC
Q psy200 341 L---------D--------LTDR--------MLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-------DKFNM 388 (490)
Q Consensus 341 ~---------~--------~~~~--------l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-------~~~~~ 388 (490)
- + +.+. +.|.|..|+. .+|.|.+++.+++.+|+...+... +....
T Consensus 644 Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid---~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~ 720 (786)
T COG0542 644 GSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRID---EIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLE 720 (786)
T ss_pred chHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcc---cEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEE
Confidence 0 0 0011 2355666776 589999999999999877665443 45667
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 389 FNASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 389 ~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
+++++.++|+++.+....+.|-+..++++-+
T Consensus 721 ~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 721 LSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred ECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 8999999999977777777777766665544
No 185
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.35 E-value=6.6e-11 Score=127.56 Aligned_cols=244 Identities=17% Similarity=0.194 Sum_probs=147.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC------CCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV------RNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~------~~~~~l~~ 267 (490)
..++|++..+..|.-.+. ....++|+|+|++|+|||++|+.+++.+..-....-..++|... .....+..
T Consensus 4 ~~ivGq~~~~~al~~~av----~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~ 79 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAV----DPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYR 79 (633)
T ss_pred chhcChHHHHHHHHHHhh----CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccc
Confidence 468999988866655443 23457799999999999999999988762000000001111110 00000000
Q ss_pred HHHHH----hcCCCCCCcHHHHHHH--HHHHHhc------C-----CCeEEEEEecCccccccCHHHHHHhHhCCC----
Q psy200 268 TIVNE----LKLKPGGKSERHQLGA--ILKYFDT------K-----HKSILLILDEIDALESRKQTILYTIFEWPS---- 326 (490)
Q Consensus 268 ~i~~~----l~~~~~~~s~~~~~~~--l~~~l~~------~-----~~~~vI~IDEid~l~~~~~~~L~~l~~~~~---- 326 (490)
. ... +.....+.+...++.. +...+.. . ...-+||||||+.|....|+.|+.+++...
T Consensus 80 ~-~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 80 P-SEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred c-cccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 0 000 0000011111111110 1111110 0 112399999999999999999998886432
Q ss_pred ------CCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCC-HHHHHHHHHHHHhc-----------------
Q psy200 327 ------IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYS-REQILEIISQKLKQ----------------- 382 (490)
Q Consensus 327 ------~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls-~~e~~~il~~~l~~----------------- 382 (490)
....++++|+++|..+ ..+.+.|.+||++ .+.+.++. .++..+++.+.+..
T Consensus 159 r~g~~~~~~~~~~lIat~np~e--g~l~~~L~dR~~l---~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 233 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEE--GDLRPQLLDRFGL---CVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEE 233 (633)
T ss_pred ECCceeeecCCeEEEEecCCCC--CCCCHHHHhhcce---EEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHH
Confidence 1235789999988542 2355778889985 56666654 45555555432210
Q ss_pred ----------cCCCCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCc
Q psy200 383 ----------TDKFNMFNASALQLLAGKVAAVSG-DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 383 ----------~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~ 451 (490)
....+.+++++++.++.......- +.|..+.+++-|..+|..++ ...|+.+||..|+.-++..+
T Consensus 234 l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g-----r~~V~~~Dv~~A~~lvL~hR 308 (633)
T TIGR02442 234 LRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDG-----RRRVTAEDVREAAELVLPHR 308 (633)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC-----CCcCCHHHHHHHHHHHhhhh
Confidence 012356788888888886655443 58888999999999999999 78999999999999888665
Q ss_pred c
Q psy200 452 Q 452 (490)
Q Consensus 452 ~ 452 (490)
.
T Consensus 309 ~ 309 (633)
T TIGR02442 309 R 309 (633)
T ss_pred c
Confidence 5
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=4.6e-11 Score=118.92 Aligned_cols=196 Identities=15% Similarity=0.250 Sum_probs=123.0
Q ss_pred CCCCC-hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPG-REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvg-re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
+.++| ++..++.|...+.. +.-++.++|+||+|+||+++|+.+++.+........ ..|..+.+...+...-.-+
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~---~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~--~~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAK---NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV--EPCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC--CCCCcCHHHHHHhcCCCCC
Confidence 45667 88888888887753 345667799999999999999999998753221000 0122222211111100000
Q ss_pred hc---CCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhh
Q psy200 273 LK---LKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRM 347 (490)
Q Consensus 273 l~---~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l 347 (490)
+. ......+.+++++....... ..+...|+||||+|.|....++.|...++.+ ...+++|.+++ -..++
T Consensus 80 ~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP---p~~~~~Il~t~---~~~~l 153 (329)
T PRK08058 80 VHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP---SGGTTAILLTE---NKHQI 153 (329)
T ss_pred EEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC---CCCceEEEEeC---ChHhC
Confidence 00 01111345566655544321 1245669999999999988888898888743 34555555554 25678
Q ss_pred hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy200 348 LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITN 416 (490)
Q Consensus 348 ~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~ 416 (490)
.+.+++||. .+.|.+++.+++..++... + ++++....++. ..|++..++.++.
T Consensus 154 l~TIrSRc~----~i~~~~~~~~~~~~~L~~~----g----i~~~~~~~l~~----~~g~~~~A~~l~~ 206 (329)
T PRK08058 154 LPTILSRCQ----VVEFRPLPPESLIQRLQEE----G----ISESLATLLAG----LTNSVEEALALSE 206 (329)
T ss_pred cHHHHhhce----eeeCCCCCHHHHHHHHHHc----C----CChHHHHHHHH----HcCCHHHHHHHhc
Confidence 899999996 8999999999998887642 1 45555545543 4688887776543
No 187
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.34 E-value=9.9e-11 Score=125.01 Aligned_cols=241 Identities=15% Similarity=0.158 Sum_probs=154.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
++++|+++.++.+...+.. ..+++|+|+||||||++++++++.+....-+.++++..+.. +..+++..++..+
T Consensus 18 ~~viG~~~a~~~l~~a~~~------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~-~~~~~~~~v~~~~ 90 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQ------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPED-PNMPRIVEVPAGE 90 (608)
T ss_pred hhccCHHHHHHHHHHHHHc------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCC-CchHHHHHHHHhh
Confidence 7899999999888777753 35888999999999999999999886332145566655544 3444444444433
Q ss_pred cCC-----------------------------------------------------------------------------
Q psy200 274 KLK----------------------------------------------------------------------------- 276 (490)
Q Consensus 274 ~~~----------------------------------------------------------------------------- 276 (490)
+..
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~lv~~s~~~ 170 (608)
T TIGR00764 91 GREIVEDYKKKAFKQPSSRNLLLFMIGFIVLSEYFLKNLPPNYLLAAVIAAALILLIFGFFIPRTSIMVPKLLVDNSGKK 170 (608)
T ss_pred chHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcccchhceeeeeecCCCCC
Confidence 210
Q ss_pred ------CCCCcHHHHHHHHHHH-Hh--------------c----CCCeEEEEEecCccccccCHHHHHHhHhCCC-----
Q psy200 277 ------PGGKSERHQLGAILKY-FD--------------T----KHKSILLILDEIDALESRKQTILYTIFEWPS----- 326 (490)
Q Consensus 277 ------~~~~s~~~~~~~l~~~-l~--------------~----~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~----- 326 (490)
..+.+...+...++.. +. . ....-+|||||++.|....|..|.+.++...
T Consensus 171 ~~P~v~~~~~~~~~L~G~i~~~~~~g~~g~~~~~~~~i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g 250 (608)
T TIGR00764 171 KAPFVDATGAHAGALLGDVRHDPFQGSGGLGTPAHERVEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITG 250 (608)
T ss_pred CCCEEEeCCCChHHCccceeeccccCccccccCccccCCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecC
Confidence 0000111111111100 00 0 0112499999999999878888888764321
Q ss_pred -------------CCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCC---CCHHHH---HHHHHHHHhccCCCC
Q psy200 327 -------------IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAP---YSREQI---LEIISQKLKQTDKFN 387 (490)
Q Consensus 327 -------------~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~p---ls~~e~---~~il~~~l~~~~~~~ 387 (490)
.....+.+|+++|.. ....+.+.+++||..-...+.|+. .+.+.. ..++.+.+...+...
T Consensus 251 ~~e~~~~~~~~~~~ip~dvrvIa~~~~~-~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~ 329 (608)
T TIGR00764 251 QSENSSGAMVRTEPVPCDFILVASGNLD-DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIP 329 (608)
T ss_pred ccccccccccCCCCCccceEEEEECCHH-HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 113467888888853 344578889899861001345543 344443 455555555554445
Q ss_pred CCCHHHHHHHHHHHHHhhC-------CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHh
Q psy200 388 MFNASALQLLAGKVAAVSG-------DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 388 ~~~~~~i~~i~~~i~~~~G-------d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
.+++++++.+.+......| ..|.+-++|+.|...|..++ ...|+.+||.+|+...
T Consensus 330 ~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~-----~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 330 HFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG-----KVYVTAEHVLKAKKLA 391 (608)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC-----CceecHHHHHHHHHHH
Confidence 7899999999875544333 47888899999988888777 6789999999987754
No 188
>KOG0741|consensus
Probab=99.33 E-value=5.1e-12 Score=126.11 Aligned_cols=229 Identities=17% Similarity=0.239 Sum_probs=139.7
Q ss_pred CCCChHHHHHHHHHHHH-hhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 195 ELPGREVQLEGIRQFLL-GHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~-~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
.+-|.++++..+....- ..+. -..-++++||||||||||.+||.+...+..+. ---+|++++
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre---PKIVNGPeI----- 293 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE---PKIVNGPEI----- 293 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC---CcccCcHHH-----
Confidence 57788888888765221 1111 11346899999999999999999998875221 122444433
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc------CCCeEEEEEecCccccccC----------HHHHHHhHhCC-C-
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDT------KHKSILLILDEIDALESRK----------QTILYTIFEWP-S- 326 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~------~~~~~vI~IDEid~l~~~~----------~~~L~~l~~~~-~- 326 (490)
+. ++.|++++.+++.|.++-+. ...-.|||+||||.++..+ .....+|+... .
T Consensus 294 -L~--------KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV 364 (744)
T KOG0741|consen 294 -LN--------KYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV 364 (744)
T ss_pred -HH--------HhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH
Confidence 22 56778899999888876532 2457799999999998652 23344443221 1
Q ss_pred CCCCcEEEEEecCCCChhHhhhHHhh--hccCCCCeeEEeCCCCHHHHHHHH---HHHHhccCCCCCCCHHHHHHHHHHH
Q psy200 327 IPGSKLVLVGVANALDLTDRMLPRLQ--ANVTLQPTLMNFAPYSREQILEII---SQKLKQTDKFNMFNASALQLLAGKV 401 (490)
Q Consensus 327 ~~~~~vilI~~tn~~~~~~~l~~~l~--~R~~~~~~~i~~~pls~~e~~~il---~~~l~~~~~~~~~~~~~i~~i~~~i 401 (490)
..--+++|||.||+.|+.+. +|. .|+. -.+.+.-+++.-..+|+ .++++.. ...-++-.++.|+...
T Consensus 365 eqLNNILVIGMTNR~DlIDE---ALLRPGRlE---VqmEIsLPDE~gRlQIl~IHT~rMre~--~~l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 365 EQLNNILVIGMTNRKDLIDE---ALLRPGRLE---VQMEISLPDEKGRLQILKIHTKRMREN--NKLSADVDLKELAALT 436 (744)
T ss_pred HhhhcEEEEeccCchhhHHH---HhcCCCceE---EEEEEeCCCccCceEEEEhhhhhhhhc--CCCCCCcCHHHHHHHh
Confidence 12247999999998877554 222 2333 25666666666555444 4445444 1222334477777655
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhccc-----cC-----CcccccCHHHHHHHHHHhccC
Q psy200 402 AAVSGDIRKAIDITNHLIDLTYDNVK-----EN-----GEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 402 ~~~~Gd~r~ai~ll~~a~~~a~~~~~-----~~-----~~~~~It~~~v~~a~~~~~~~ 450 (490)
-..+|- .+-.+++.|...|..+.- .. .+..+|+++||..|+.++.+.
T Consensus 437 KNfSGA--EleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 437 KNFSGA--ELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred cCCchh--HHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 455552 222355556555544321 11 235689999999999988654
No 189
>KOG2543|consensus
Probab=99.33 E-value=1.4e-10 Score=112.30 Aligned_cols=215 Identities=20% Similarity=0.287 Sum_probs=143.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..+.+|+.++..|...+.+.-. .-+.+++|+|..|||||.+++.+.+.+ +.+.+|++|-++.+...++..|+.++
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~-~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSC-TIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCc-ccceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHh
Confidence 6799999999999998865211 234567999999999999999999986 47889999999999999999999998
Q ss_pred c-CCCCCCcHH----HH---HHHHHH--HHhcCCCeEEEEEecCccccccCHHHHHHhHhCC---CCCCCcEEEEEecCC
Q psy200 274 K-LKPGGKSER----HQ---LGAILK--YFDTKHKSILLILDEIDALESRKQTILYTIFEWP---SIPGSKLVLVGVANA 340 (490)
Q Consensus 274 ~-~~~~~~s~~----~~---~~~l~~--~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~---~~~~~~vilI~~tn~ 340 (490)
. .+..|...+ .+ ...+.+ .....++.++||+|.+|.+.......|..++++. ......++++....
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~- 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC- 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc-
Confidence 5 333333222 22 222332 1122346899999999999877766555555443 33333333333221
Q ss_pred CChhHhhhHHhhhccC-CCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 341 LDLTDRMLPRLQANVT-LQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 341 ~~~~~~l~~~l~~R~~-~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
.. ....+.+ ...-.++|+.|+.+++..|+.+--... ....+-...+..+..-.+..|+|++.+..++..++
T Consensus 160 ----e~---~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~-r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~w 231 (438)
T KOG2543|consen 160 ----EK---QYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGK-RKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAW 231 (438)
T ss_pred ----HH---HhhcccCCCCceEEecCCCCHHHHHHHHhcCCccc-cchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 11 1111222 223479999999999999987632211 01111245566777777889999998888887777
Q ss_pred HHH
Q psy200 420 DLT 422 (490)
Q Consensus 420 ~~a 422 (490)
-.-
T Consensus 232 pky 234 (438)
T KOG2543|consen 232 PKY 234 (438)
T ss_pred Hhh
Confidence 543
No 190
>KOG1942|consensus
Probab=99.32 E-value=1e-10 Score=109.08 Aligned_cols=133 Identities=23% Similarity=0.268 Sum_probs=97.9
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCC--------CCh--hHhhhHHhhhccCCCCeeEEeCCCC
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANA--------LDL--TDRMLPRLQANVTLQPTLMNFAPYS 368 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~--------~~~--~~~l~~~l~~R~~~~~~~i~~~pls 368 (490)
|-||||||+|.|.-.....|...++.. - .-++|.++|+ .++ +.-+-+.+..|+- +|...+|+
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~---i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~----Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESP---I-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLL----IIRTLPYD 368 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCC---C-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhhee----EEeeccCC
Confidence 669999999999765555566655532 1 2344455552 111 1122345666664 79999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 369 REQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 369 ~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
++++.+|+..+...+ ...++++++..+++ .+..-.+|++++++.-|-.+|.-.+ ...|..+++.++-.-+.
T Consensus 369 ~~e~r~Ii~~Ra~~E--~l~~~e~a~~~l~~--~gt~tsLRy~vqLl~p~~~~ak~~g-----~~~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQVE--GLQVEEEALDLLAE--IGTSTSLRYAVQLLTPASILAKTNG-----RKEISVEDVEEVTELFL 439 (456)
T ss_pred HHHHHHHHHHHHhhh--cceecHHHHHHHHh--hccchhHHHHHHhcCHHHHHHHHcC-----CceeecccHHHHHHHHH
Confidence 999999999999887 46789999999987 4556689999999999988999888 66888888888765444
No 191
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.32 E-value=5.3e-11 Score=132.17 Aligned_cols=214 Identities=14% Similarity=0.142 Sum_probs=140.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhc----cC-CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN----NE-TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~----~~-~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
+.++|++..++.|...+..... .. +...++++||+|+|||++|+++++.+.. ....++.++.+.+.....+ ..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~-~~~~~~~~d~s~~~~~~~~-~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG-SEDAMIRLDMSEYMEKHTV-SK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-CccceEEEEchhccccccH-HH
Confidence 8899999999999998875422 11 2346889999999999999999998742 2235677777665432222 11
Q ss_pred HHHHhcCC--CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEec
Q psy200 269 IVNELKLK--PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVA 338 (490)
Q Consensus 269 i~~~l~~~--~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~t 338 (490)
+ ++.+ +.|... ...+.+.+.. ....||+|||++.+....++.|+++++.... .-.+.++|+++
T Consensus 587 l---~g~~~gyvg~~~---~~~l~~~~~~-~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 587 L---IGSPPGYVGYNE---GGQLTEAVRK-KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred h---cCCCCcccCcCc---cchHHHHHHh-CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 1 1211 111111 1123344433 3357999999999988888999998875421 23567888888
Q ss_pred CCC-C----------h-----------------------hHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-
Q psy200 339 NAL-D----------L-----------------------TDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT- 383 (490)
Q Consensus 339 n~~-~----------~-----------------------~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~- 383 (490)
|.- + + ...+.|.|.+|++ .++.|.|++.+++.+|+...+...
T Consensus 660 n~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid---~ii~F~pL~~~~l~~Iv~~~l~~l~ 736 (821)
T CHL00095 660 NLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLD---EIIVFRQLTKNDVWEIAEIMLKNLF 736 (821)
T ss_pred CcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCC---eEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 721 0 0 0012345667775 589999999999999987766542
Q ss_pred ------CCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 384 ------DKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 384 ------~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
+....+++++++.|++..+....+.|.+-.++++.+
T Consensus 737 ~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i 778 (821)
T CHL00095 737 KRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLL 778 (821)
T ss_pred HHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Confidence 345678999999999854444445665555554444
No 192
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=106.17 Aligned_cols=175 Identities=15% Similarity=0.226 Sum_probs=125.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|-+.+.+.|.+.-...+.+.+.+++||+|..||||++|++++.+++. ......++|+-..+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~-~~glrLVEV~k~dl-------------- 124 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA-DEGLRLVEVDKEDL-------------- 124 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH-hcCCeEEEEcHHHH--------------
Confidence 689999999999999999888888999999999999999999999999986 22346777742222
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc-CHHHHHHhHhCC-CCCCCcEEEEEecCCCChhHh-----
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR-KQTILYTIFEWP-SIPGSKLVLVGVANALDLTDR----- 346 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~-~~~~L~~l~~~~-~~~~~~vilI~~tn~~~~~~~----- 346 (490)
..+- .+.+.++....++|||.||+-.=.+. .-..|...++-. .....+|+|.+++|+-.+..+
T Consensus 125 ---------~~Lp-~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn 194 (287)
T COG2607 125 ---------ATLP-DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDN 194 (287)
T ss_pred ---------hhHH-HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhC
Confidence 1111 22333555577899999998654332 234555555433 334678888888885433221
Q ss_pred ------------hhH--HhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHH
Q psy200 347 ------------MLP--RLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLA 398 (490)
Q Consensus 347 ------------l~~--~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~ 398 (490)
+.+ .+..|||+ .+.|.|.+.++..+++.+.+.+. .+.++++.++.=+
T Consensus 195 ~~~~~eih~~eaveEKlSlSDRFGL---wL~F~~~~Q~~YL~~V~~~a~~~--~l~~~~e~l~~eA 255 (287)
T COG2607 195 EGSTGEIHPSEAVEEKLSLSDRFGL---WLSFYPCDQDEYLKIVDHYAKHF--GLDISDEELHAEA 255 (287)
T ss_pred CCcccccChhHHHHHhhchhhhcce---eecccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 111 46779996 89999999999999999999887 4556665555544
No 193
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.29 E-value=6.7e-11 Score=115.12 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=118.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++-..+....+..++. ..++++|.|+||||||++++.++..++ ++++.++|....+..+++....-.+
T Consensus 45 ~~y~f~~~~~~~vl~~l~------~~~~ilL~G~pGtGKTtla~~lA~~l~----~~~~rV~~~~~l~~~DliG~~~~~l 114 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFA------YDRRVMVQGYHGTGKSTHIEQIAARLN----WPCVRVNLDSHVSRIDLVGKDAIVL 114 (327)
T ss_pred CCccCCHHHHHHHHHHHh------cCCcEEEEeCCCChHHHHHHHHHHHHC----CCeEEEEecCCCChhhcCCCceeec
Confidence 345555555555555553 256899999999999999999999986 7788999988877665543311101
Q ss_pred cCCCCCCcHHHHH-HHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCC------C-----CCCCcEEEEEecCCC
Q psy200 274 KLKPGGKSERHQL-GAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWP------S-----IPGSKLVLVGVANAL 341 (490)
Q Consensus 274 ~~~~~~~s~~~~~-~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~------~-----~~~~~vilI~~tn~~ 341 (490)
. .+.....+. ..|..+.. .+.+|++||++......+..|..+++.. . ..+..+.+|++.|..
T Consensus 115 ~---~g~~~~~f~~GpL~~A~~---~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 115 K---DGKQITEFRDGILPWALQ---HNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred c---CCcceeEEecCcchhHHh---CCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 0 011001111 11222222 3568999999999888888888777631 1 134578899999975
Q ss_pred C---------hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q psy200 342 D---------LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAG 399 (490)
Q Consensus 342 ~---------~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~ 399 (490)
+ -...+...+.+||.+ .+.++.++.++-.+|+....... .....+..++.+.+
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i---~~~~~Yp~~e~E~~Il~~~~~~~--~~~~~~~i~~~mV~ 250 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSI---VTTLNYLEHDNEAAIVLAKAKGF--DDTEGKDIINAMVR 250 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheee---EeeCCCCCHHHHHHHHHhhccCC--CccchHHHHHHHHH
Confidence 4 134456788889963 56899999999999988765332 11123455555554
No 194
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=2.3e-10 Score=113.25 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=113.2
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh---cCC--CCCCcHHHHHHHHH
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL---KLK--PGGKSERHQLGAIL 290 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l---~~~--~~~~s~~~~~~~l~ 290 (490)
+.-++.++|+||+|+|||++|+.+++.+...... -.-.|..+.+...+...-.-++ ... ....+.+++++...
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~--~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~ 96 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQ--GGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVS 96 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHH
Confidence 3456779999999999999999999998642211 0012333322222211000000 000 11245667776554
Q ss_pred HHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCC
Q psy200 291 KYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYS 368 (490)
Q Consensus 291 ~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls 368 (490)
..... .++..|+|||++|.|....++.|...++.+ ...+++|.+|+ -.+.+++.+++||. .+.|.+++
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP---p~~~~fiL~t~---~~~~ll~TI~SRc~----~~~~~~~~ 166 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP---SGDTVLLLISH---QPSRLLPTIKSRCQ----QQACPLPS 166 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC---CCCeEEEEEEC---ChhhCcHHHHhhce----eeeCCCcC
Confidence 44322 244567889999999999899998888754 34566666665 25678899999996 89999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 369 REQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 369 ~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
.+++.+.|...+.. ..++....++. ...|.+..++.++
T Consensus 167 ~~~~~~~L~~~~~~------~~~~~~~~~l~---la~Gsp~~A~~l~ 204 (328)
T PRK05707 167 NEESLQWLQQALPE------SDERERIELLT---LAGGSPLRALQLH 204 (328)
T ss_pred HHHHHHHHHHhccc------CChHHHHHHHH---HcCCCHHHHHHHH
Confidence 99999999875421 24444444443 4667777776554
No 195
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.28 E-value=3.7e-11 Score=126.15 Aligned_cols=228 Identities=16% Similarity=0.225 Sum_probs=149.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|....+.++...+... ......++|+|++||||+++|+++++... ..+.+++.++|..+ ....+-..++..-
T Consensus 138 ~~lig~s~~~~~l~~~~~~~--~~~~~~vli~Ge~GtGK~~lA~~ih~~s~-~~~~~~i~i~c~~~-~~~~~~~~lfg~~ 213 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRL--SRSSISVLINGESGTGKELVAHALHRHSP-RAKAPFIALNMAAI-PKDLIESELFGHE 213 (469)
T ss_pred ccceecCHHHHHHHHHHHHH--hccCCeEEEEeCCCCcHHHHHHHHHhcCC-CCCCCeEeeeCCCC-CHHHHHHHhcCCC
Confidence 56889888888888877653 34567899999999999999999977542 34458899999887 3232333332222
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
.+.+.+.... .... +... ..-.|||||++.|....|..|..+++.... ....+.+|++++.. +.+
T Consensus 214 ~g~~~~~~~~-~~g~----~~~a-~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~-l~~ 286 (469)
T PRK10923 214 KGAFTGANTI-RQGR----FEQA-DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN-LEQ 286 (469)
T ss_pred CCCCCCCCcC-CCCC----eeEC-CCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCC-HHH
Confidence 1111111100 0001 1111 122789999999999989888888764321 12345777777532 222
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CC-CCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DK-FNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~-~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+.+.+..|+.. ..|.++|+. .+++..++.+++... +. ...+++++++.+.. +.|.||+|++-+
T Consensus 287 ~~~~~~~~~~L~~~l~~--~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~ 362 (469)
T PRK10923 287 RVQEGKFREDLFHRLNV--IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR--LAWPGNVRQLEN 362 (469)
T ss_pred HHHcCCchHHHHHHhcc--eeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh--CCCCChHHHHHH
Confidence 234566677643 378889987 467777777766543 22 23589999999998 899999999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++++++..+.. ..|+.+++...+
T Consensus 363 ~i~~~~~~~~~--------~~i~~~~l~~~~ 385 (469)
T PRK10923 363 TCRWLTVMAAG--------QEVLIQDLPGEL 385 (469)
T ss_pred HHHHHHHhCCC--------CcccHHHCcHhh
Confidence 99999876642 247777765433
No 196
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.26 E-value=2.3e-11 Score=110.92 Aligned_cols=129 Identities=19% Similarity=0.380 Sum_probs=72.0
Q ss_pred CCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-----HHHHHHHH
Q psy200 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-----AASVYETI 269 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-----~~~l~~~i 269 (490)
.|+||++++++|..+|. ....+.++.++|+|++|+|||++++.++..+.....+ ++.++|..... ...++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY-VISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEEEeccccchhhHHHHHHHHH
Confidence 48999999999999997 5566778999999999999999999999998766445 77787777631 13334444
Q ss_pred HHHhcCCCC------------------------------------CCcHHHHH----HHHHHHHhc---CCCeEEEEEec
Q psy200 270 VNELKLKPG------------------------------------GKSERHQL----GAILKYFDT---KHKSILLILDE 306 (490)
Q Consensus 270 ~~~l~~~~~------------------------------------~~s~~~~~----~~l~~~l~~---~~~~~vI~IDE 306 (490)
+.++..... ........ ..+...+.. ..++++|+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~vlviDd 158 (185)
T PF13191_consen 79 IDQLLDQSQATTRSPLREKLAASLDDDAADLLVLLPDLDRLEAASALDPDSLEDRLEELLREILRELAARRKPLVLVIDD 158 (185)
T ss_dssp S------------------------------------------SS---HHHHH----HHHHHHHTTS-SE---EEEEEET
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccccCCCHHHHHhHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 333221100 00111112 334444322 13469999999
Q ss_pred CccccccCHHHHHHhHhCC
Q psy200 307 IDALESRKQTILYTIFEWP 325 (490)
Q Consensus 307 id~l~~~~~~~L~~l~~~~ 325 (490)
+|++....++.|..+++..
T Consensus 159 ~d~~~~~~~~~l~~l~~~~ 177 (185)
T PF13191_consen 159 LDWADPASLDLLRALARRL 177 (185)
T ss_dssp TTHHHTTHHHHHHH-----
T ss_pred CCCCCcHHHHHHHhccccc
Confidence 9999888888887776644
No 197
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.26 E-value=3.9e-11 Score=125.09 Aligned_cols=224 Identities=17% Similarity=0.189 Sum_probs=144.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|....+..+...+... ......++|+|++|+||+++|+.+..... ....+++.++|..+.. ..+-..++..-
T Consensus 139 ~~lig~s~~~~~l~~~i~~~--a~~~~~vli~Ge~GtGK~~lA~~ih~~s~-~~~~~~v~v~c~~~~~-~~~~~~lfg~~ 214 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI--APSDITVLLLGESGTGKEVLARALHQLSD-RKDKRFVAINCAAIPE-NLLESELFGYE 214 (445)
T ss_pred cceeecCHHHHHHHHHHHHH--hCCCCCEEEECCCCcCHHHHHHHHHHhCC-cCCCCeEEEECCCCCh-HHHHHHhcCCC
Confidence 45788888888888877653 34567899999999999999999976543 3345789999998732 22222222211
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
...+.+.. ......+. . ...-+||||||+.|....|..|..+++.... ....+.+|++++.. +..
T Consensus 215 ~~~~~~~~-~~~~g~~~----~-a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~-l~~ 287 (445)
T TIGR02915 215 KGAFTGAV-KQTLGKIE----Y-AHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD-LKR 287 (445)
T ss_pred CCCcCCCc-cCCCCcee----E-CCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC-HHH
Confidence 11111110 00001111 1 1123899999999999989888888764321 12356777777632 211
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CC-CCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DK-FNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~-~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+.+.+..|+.. ..|.++|+. .+++..++.+++... +. ...+++++++.+.. +.|.||+|++-+
T Consensus 288 ~~~~~~~~~~L~~~l~~--~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~--~~wpgNvreL~~ 363 (445)
T TIGR02915 288 MIAEGTFREDLFYRIAE--ISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA--HAWPGNVRELEN 363 (445)
T ss_pred HHHcCCccHHHHHHhcc--ceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh--CCCCChHHHHHH
Confidence 233456566543 378888887 456766666665543 22 24689999999987 789999999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEV 440 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v 440 (490)
++++|+..+.. ..|+.+++
T Consensus 364 ~i~~a~~~~~~--------~~i~~~~l 382 (445)
T TIGR02915 364 KVKRAVIMAEG--------NQITAEDL 382 (445)
T ss_pred HHHHHHHhCCC--------CcccHHHc
Confidence 99999865542 24666665
No 198
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.24 E-value=1e-10 Score=122.58 Aligned_cols=228 Identities=17% Similarity=0.223 Sum_probs=148.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|......++...+... ......++|.|++||||+++++++..... .....++.++|... ....+-..++...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~--a~~~~~vli~Ge~GtGK~~~A~~ih~~~~-~~~~~~~~~~c~~~-~~~~~~~~lfg~~ 209 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL--SRSDITVLINGESGTGKELVARALHRHSP-RANGPFIALNMAAI-PKDLIESELFGHE 209 (463)
T ss_pred cceeecCHHHHHHHHHHHHH--hCcCCeEEEECCCCCCHHHHHHHHHHhCC-CCCCCeEEEeCCCC-CHHHHHHHhcCCC
Confidence 35777777777777777652 34566899999999999999999976543 33458899999987 2222222222211
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
...+.+... ..... +.. ....+||||||+.|....|..|..+++.... ....+.+|++++.. +.+
T Consensus 210 ~~~~~~~~~-~~~g~----~~~-a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~-l~~ 282 (463)
T TIGR01818 210 KGAFTGANT-RRQGR----FEQ-ADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN-LEA 282 (463)
T ss_pred CCCCCCccc-CCCCc----EEE-CCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC-HHH
Confidence 111111110 00001 111 1123799999999999888888888764321 12355677777532 211
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CC-CCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DK-FNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~-~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+.+.+..|+.. ..|.++|+. .+++..++.+++... +. ...+++++++.+.. +.|.||+|++-+
T Consensus 283 ~~~~~~f~~~L~~rl~~--~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~--~~wpgNvreL~~ 358 (463)
T TIGR01818 283 LVRQGKFREDLFHRLNV--IRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQ--LRWPGNVRQLEN 358 (463)
T ss_pred HHHcCCcHHHHHHHhCc--ceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh--CCCCChHHHHHH
Confidence 233466666653 379999998 788888887776554 11 24689999999998 789999999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++++++..+.. ..|+.+++...+
T Consensus 359 ~~~~~~~~~~~--------~~i~~~~l~~~~ 381 (463)
T TIGR01818 359 LCRWLTVMASG--------DEVLVSDLPAEL 381 (463)
T ss_pred HHHHHHHhCCC--------CcccHHhchHHH
Confidence 99999876643 247777775444
No 199
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.22 E-value=4.9e-10 Score=113.16 Aligned_cols=170 Identities=16% Similarity=0.180 Sum_probs=106.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc-eEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF-KTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~-~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
+++++.++.++.+...|.. .++++|+|+||||||++|+.+++.+.....+ .+.++......+..+++. .
T Consensus 175 ~d~~i~e~~le~l~~~L~~------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~----G 244 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ----G 244 (459)
T ss_pred hcccCCHHHHHHHHHHHhc------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc----c
Confidence 6688889999888887753 6799999999999999999999988533222 333444443334333332 1
Q ss_pred hcCCCCCCc--HHHHHHHHHHHHhcCCCeEEEEEecCccccccC-HHHHHHhHhCC-------------------CCCCC
Q psy200 273 LKLKPGGKS--ERHQLGAILKYFDTKHKSILLILDEIDALESRK-QTILYTIFEWP-------------------SIPGS 330 (490)
Q Consensus 273 l~~~~~~~s--~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-~~~L~~l~~~~-------------------~~~~~ 330 (490)
+.....+.. ..-+.+++..+.....++++|||||+++..-.. ...++.+++.. .....
T Consensus 245 ~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~ 324 (459)
T PRK11331 245 YRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPE 324 (459)
T ss_pred cCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCC
Confidence 111111111 123455555555544578999999999976432 33344444321 12346
Q ss_pred cEEEEEecCCCCh-hHhhhHHhhhccCCCCeeEEeCC-CCHHHHHHHHH
Q psy200 331 KLVLVGVANALDL-TDRMLPRLQANVTLQPTLMNFAP-YSREQILEIIS 377 (490)
Q Consensus 331 ~vilI~~tn~~~~-~~~l~~~l~~R~~~~~~~i~~~p-ls~~e~~~il~ 377 (490)
++.+||++|..|- ...++.++++||. .+.+.| ++.....+++.
T Consensus 325 Nl~IIgTMNt~Drs~~~lD~AlrRRF~----fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 325 NVYIIGLMNTADRSLAVVDYALRRRFS----FIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred CeEEEEecCccccchhhccHHHHhhhh----eEEecCCCChHHHHHHHH
Confidence 7899999996652 2346789999997 677777 55555555543
No 200
>PRK15115 response regulator GlrR; Provisional
Probab=99.21 E-value=1.3e-10 Score=121.20 Aligned_cols=228 Identities=18% Similarity=0.245 Sum_probs=142.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|....+..+.+.+... ......++|+|++|+||+++|+.+.+... ..+..++.++|.... ...+-..++...
T Consensus 134 ~~lig~s~~~~~~~~~~~~~--a~~~~~vli~Ge~GtGk~~lA~~ih~~s~-r~~~~f~~i~c~~~~-~~~~~~~lfg~~ 209 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMV--AQSDVSVLINGQSGTGKEILAQAIHNASP-RASKPFIAINCGALP-EQLLESELFGHA 209 (444)
T ss_pred hcccccCHHHHHHHHHHHhh--ccCCCeEEEEcCCcchHHHHHHHHHHhcC-CCCCCeEEEeCCCCC-HHHHHHHhcCCC
Confidence 34677766666666555442 23456899999999999999999977543 334589999999873 222222222221
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
...+.+... ..... +.. ...-+||||||+.|....|..|..+++.... ....+.+|++++. ++..
T Consensus 210 ~~~~~~~~~-~~~g~----~~~-a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~-~l~~ 282 (444)
T PRK15115 210 RGAFTGAVS-NREGL----FQA-AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR-DLPK 282 (444)
T ss_pred cCCCCCCcc-CCCCc----EEE-CCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC-CHHH
Confidence 111111100 00001 111 1123899999999999999988888764321 1235678877763 2322
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCCH--HHHHHHHHHHHhcc----CCC-CCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYSR--EQILEIISQKLKQT----DKF-NMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls~--~e~~~il~~~l~~~----~~~-~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+.+.+..|+.. ..|.++|+.. +++..++.+.+... +.. ..+++++++.+.. +.|.||+|++.+
T Consensus 283 ~~~~~~f~~~l~~~l~~--~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~--~~WpgNvreL~~ 358 (444)
T PRK15115 283 AMARGEFREDLYYRLNV--VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT--ASWPGNVRQLVN 358 (444)
T ss_pred HHHcCCccHHHHHhhce--eeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh--CCCCChHHHHHH
Confidence 223445555542 3688888873 56776666665543 212 3489999999997 889999999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++++++..+. + ..|+.+++...+
T Consensus 359 ~i~~~~~~~~--~------~~i~~~~l~~~~ 381 (444)
T PRK15115 359 VIEQCVALTS--S------PVISDALVEQAL 381 (444)
T ss_pred HHHHHHHhCC--C------CccChhhhhhhh
Confidence 9999986543 2 357777765443
No 201
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.21 E-value=5.3e-10 Score=119.24 Aligned_cols=215 Identities=13% Similarity=0.081 Sum_probs=139.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH--HHHhcCCCCCCcHHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI--VNELKLKPGGKSERHQLGAILKYFD 294 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i--~~~l~~~~~~~s~~~~~~~l~~~l~ 294 (490)
...++|+|.|++|||||++++++++.+.. ...|+.+.+.. +...++..+ ...+.. |. ..+-.-.+.
T Consensus 14 p~~g~vLl~G~~GtgKs~lar~l~~~~~~--~~pfv~i~~~~--t~d~L~G~idl~~~~~~---g~-----~~~~~G~L~ 81 (589)
T TIGR02031 14 PSLGGVAIRARAGTGKTALARALAEILPP--IMPFVELPLGV--TEDRLIGGIDVEESLAG---GQ-----RVTQPGLLD 81 (589)
T ss_pred CCcceEEEEcCCCcHHHHHHHHHHHhCCc--CCCeEecCccc--chhhcccchhhhhhhhc---Cc-----ccCCCCCee
Confidence 34789999999999999999999887642 22456565321 222222211 000000 00 000000011
Q ss_pred cCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------CCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEe
Q psy200 295 TKHKSILLILDEIDALESRKQTILYTIFEWPSI----------PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNF 364 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~----------~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~ 364 (490)
. ...-+||||||+.+....|..|...++...+ ....+.||+++|..+....+.+.+..||.+ .+.+
T Consensus 82 ~-A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l---~v~~ 157 (589)
T TIGR02031 82 E-APRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLAL---HVSL 157 (589)
T ss_pred e-CCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccC---eeec
Confidence 1 1123999999999999999999998864421 135688999888654334667788899986 3444
Q ss_pred CCC-CHHHHHHHHHHHHhc---------------------cCCCCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHH
Q psy200 365 APY-SREQILEIISQKLKQ---------------------TDKFNMFNASALQLLAGKVAAVSG-DIRKAIDITNHLIDL 421 (490)
Q Consensus 365 ~pl-s~~e~~~il~~~l~~---------------------~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ll~~a~~~ 421 (490)
..+ +.++..+|+...+.. ......++++.++.|++....... +.|..+.+++-|...
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 433 455556666554311 123467889999998886655443 488889999999999
Q ss_pred HHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 422 TYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 422 a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
|..++ ...|+.+||..|+.-++.++.
T Consensus 238 Aal~g-----r~~V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 238 AALHG-----RTEVTEEDLKLAVELVLLPRA 263 (589)
T ss_pred HHHhC-----CCCCCHHHHHHHHHHHhhhhc
Confidence 99999 789999999999998876554
No 202
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=5.2e-10 Score=111.70 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=108.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|+++.+..+...+.. +++++|.|+||||||++++.++..++ ..++.++|.....+.+++....-..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~------~~~vll~G~PG~gKT~la~~lA~~l~----~~~~~i~~t~~l~p~d~~G~~~~~~ 93 (329)
T COG0714 24 KVVVGDEEVIELALLALLA------GGHVLLEGPPGVGKTLLARALARALG----LPFVRIQCTPDLLPSDLLGTYAYAA 93 (329)
T ss_pred CeeeccHHHHHHHHHHHHc------CCCEEEECCCCccHHHHHHHHHHHhC----CCeEEEecCCCCCHHHhcCchhHhh
Confidence 4588888888777666643 77999999999999999999999986 7889999998888777654322211
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCC---------CCCCCcEEEEEecCCCCh-
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWP---------SIPGSKLVLVGVANALDL- 343 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~---------~~~~~~vilI~~tn~~~~- 343 (490)
..... ..+.+...-+-..-+ .++++|||+......+..|+..++.. ......+++|++.|..+.
T Consensus 94 ~~~~~-----~~~~~~~gpl~~~~~-~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~ 167 (329)
T COG0714 94 LLLEP-----GEFRFVPGPLFAAVR-VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYE 167 (329)
T ss_pred hhccC-----CeEEEecCCcccccc-eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccC
Confidence 10000 000000000000011 49999999999999999999887642 112356788888885432
Q ss_pred -hHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHH
Q psy200 344 -TDRMLPRLQANVTLQPTLMNFAPYSREQILEIIS 377 (490)
Q Consensus 344 -~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~ 377 (490)
...+.+.+.+||.+ .+.++.+..++...++.
T Consensus 168 g~~~l~eA~ldRf~~---~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 168 GTYPLPEALLDRFLL---RIYVDYPDSEEEERIIL 199 (329)
T ss_pred CCcCCCHHHHhhEEE---EEecCCCCchHHHHHHH
Confidence 34456788889863 68888884444343333
No 203
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.21 E-value=6.6e-10 Score=115.60 Aligned_cols=231 Identities=16% Similarity=0.164 Sum_probs=139.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH---HH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET---IV 270 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~---i~ 270 (490)
.++.|++..++.+.-.+ ..+.+++|+|++|+|||++++.+...+.....- ..+.+....+....+.. +.
T Consensus 192 ~dv~Gq~~~~~al~~aa------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~--~~le~~~i~s~~g~~~~~~~~~ 263 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAA------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNE--EAIETARIWSLVGKLIDRKQIK 263 (499)
T ss_pred HHhcCcHHHHhhhhhhc------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCc--EEEeccccccchhhhccccccc
Confidence 67889888766555443 346789999999999999999998765422111 22333222221111000 00
Q ss_pred -HHhcCCCCCCcHHHHH--------HHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------CCCc
Q psy200 271 -NELKLKPGGKSERHQL--------GAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI----------PGSK 331 (490)
Q Consensus 271 -~~l~~~~~~~s~~~~~--------~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~----------~~~~ 331 (490)
.-+.......+...+. ..+. +.. .-+|||||++.+....++.|++.++.... ...+
T Consensus 264 ~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~--lA~---~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~ 338 (499)
T TIGR00368 264 QRPFRSPHHSASKPALVGGGPIPLPGEIS--LAH---NGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPAR 338 (499)
T ss_pred cCCccccccccchhhhhCCccccchhhhh--ccC---CCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCC
Confidence 0000000001111110 0111 111 23999999999998889999988764421 2357
Q ss_pred EEEEEecCCC-----C---------------hhHhhhHHhhhccCCCCeeEEeCCCCHHHHH------------H-----
Q psy200 332 LVLVGVANAL-----D---------------LTDRMLPRLQANVTLQPTLMNFAPYSREQIL------------E----- 374 (490)
Q Consensus 332 vilI~~tn~~-----~---------------~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~------------~----- 374 (490)
+.+|+++|.. + +..++...+.+||++ .+.+.+++.+++. +
T Consensus 339 frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl---~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~A 415 (499)
T TIGR00368 339 FQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDL---SVEVPLLPPEKLLSTGSGESSAEVKQRVIKA 415 (499)
T ss_pred eEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCE---EEEEcCCCHHHHhccCCCCCHHHHHHHHHHH
Confidence 8899988842 1 233567789999996 7888887655432 1
Q ss_pred --HHHHHHhcc---C-----------CCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHH
Q psy200 375 --IISQKLKQT---D-----------KFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLK 438 (490)
Q Consensus 375 --il~~~l~~~---~-----------~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~ 438 (490)
+...++... . ..+.+++++.+.+.+.+....=..|....+++-|..+|..++ ...|+.+
T Consensus 416 r~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g-----~~~i~~~ 490 (499)
T TIGR00368 416 REIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKE-----EKNISRE 490 (499)
T ss_pred HHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcC-----CCCCCHH
Confidence 111222110 0 013456666666655444444578888899999999999999 7899999
Q ss_pred HHHHHHH
Q psy200 439 EVLGVIS 445 (490)
Q Consensus 439 ~v~~a~~ 445 (490)
||.+|+.
T Consensus 491 hv~eA~~ 497 (499)
T TIGR00368 491 HLAEAIE 497 (499)
T ss_pred HHHHHHh
Confidence 9999984
No 204
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.20 E-value=8.8e-10 Score=117.37 Aligned_cols=239 Identities=17% Similarity=0.187 Sum_probs=154.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
++++|+++.++.|...+.. .++++|+|+||+|||++++++++.+....-..++|+..+.. +...++..+...+
T Consensus 31 ~~vigq~~a~~~L~~~~~~------~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~~-~~~~~~~~v~~~~ 103 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQ------RRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPED-PNNPKIRTVPAGK 103 (637)
T ss_pred HHcCChHHHHHHHHHHHHh------CCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCCc-chHHHHHHHHHhc
Confidence 7899999999988877753 35899999999999999999999875332234556555443 5555555554433
Q ss_pred cCC-----------------------------------------------------------------------------
Q psy200 274 KLK----------------------------------------------------------------------------- 276 (490)
Q Consensus 274 ~~~----------------------------------------------------------------------------- 276 (490)
+..
T Consensus 104 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nllv~ns~~~~aP 183 (637)
T PRK13765 104 GKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKLLVNNADKKTAP 183 (637)
T ss_pred CHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEEEEeCCCCCCCC
Confidence 210
Q ss_pred ---CCCCcHHHHHHHHHHH------H-----h--c-----CCCeEEEEEecCccccccCHHHHHHhHhCCCC--------
Q psy200 277 ---PGGKSERHQLGAILKY------F-----D--T-----KHKSILLILDEIDALESRKQTILYTIFEWPSI-------- 327 (490)
Q Consensus 277 ---~~~~s~~~~~~~l~~~------l-----~--~-----~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~-------- 327 (490)
....+..+++..++.. + . + ....-+|||||++.|....|..|.++++....
T Consensus 184 vi~~~~p~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~ 263 (637)
T PRK13765 184 FVDATGAHAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSER 263 (637)
T ss_pred EEEeCCCCHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccc
Confidence 0001122222222100 0 0 0 01124899999999987778888877643221
Q ss_pred ----------CCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCC---CHHHHHHHHHHHHh---ccCCCCCCCH
Q psy200 328 ----------PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPY---SREQILEIISQKLK---QTDKFNMFNA 391 (490)
Q Consensus 328 ----------~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pl---s~~e~~~il~~~l~---~~~~~~~~~~ 391 (490)
-...+.+|++++. ++...+++.|..||..-...+.|..- +.+....++..... ..+....++.
T Consensus 264 ~~~~~~~~~~ip~dvrvI~a~~~-~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~ 342 (637)
T PRK13765 264 SSGAMVRTEPVPCDFIMVAAGNL-DALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDR 342 (637)
T ss_pred cccccCCCcceeeeeEEEEecCc-CHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCH
Confidence 1246688888886 45566678888887511024556543 35555555543332 2223457999
Q ss_pred HHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 392 SALQLLAGKVAAVSGD-------IRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 392 ~~i~~i~~~i~~~~Gd-------~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+++..|.+......|+ .+.+.++++.|..+|..++ ...|+.+|+.+|+.
T Consensus 343 eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~-----~~~i~~~~v~~a~~ 398 (637)
T PRK13765 343 DAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG-----AELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhc-----cceecHHHHHHHHH
Confidence 9999999988777776 6778889999999999888 67899999988874
No 205
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.19 E-value=1.5e-09 Score=107.23 Aligned_cols=239 Identities=17% Similarity=0.194 Sum_probs=144.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEE---EeccCCCCHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIY---INCNSVRNAASVYETIV 270 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~---v~~~~~~~~~~l~~~i~ 270 (490)
.-++|.+.....|.-.. -...-+++||.|+.|+||||++++|+.-|. ...++. ++|... .+..+.....
T Consensus 17 ~aivGqd~lk~aL~l~a----v~P~iggvLI~G~kGtaKSt~~Rala~LLp---~~~~V~gc~f~cdP~-~P~~~c~~c~ 88 (423)
T COG1239 17 TAIVGQDPLKLALGLNA----VDPQIGGALIAGEKGTAKSTLARALADLLP---EIEVVIGCPFNCDPD-DPEEMCDECR 88 (423)
T ss_pred hhhcCchHHHHHHhhhh----cccccceeEEecCCCccHHHHHHHHHHhCC---ccceecCCCCCCCCC-ChhhhhHHHH
Confidence 45788877665443321 235678999999999999999999998874 333332 233332 2222222222
Q ss_pred HH---hc------------CCCCCCcHHHHHHH--HHHHHhc-----------CCCeEEEEEecCccccccCHHHHHHhH
Q psy200 271 NE---LK------------LKPGGKSERHQLGA--ILKYFDT-----------KHKSILLILDEIDALESRKQTILYTIF 322 (490)
Q Consensus 271 ~~---l~------------~~~~~~s~~~~~~~--l~~~l~~-----------~~~~~vI~IDEid~l~~~~~~~L~~l~ 322 (490)
.. .. ....+.+.+.+... +.++++. ..++-||+|||+..|...-++.|+..+
T Consensus 89 ~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~a 168 (423)
T COG1239 89 AKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVA 168 (423)
T ss_pred hhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHH
Confidence 22 10 01112223322110 1111111 123449999999999999899998887
Q ss_pred hCC----------CCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCC-CHHHHHHHHHHHHhcc--------
Q psy200 323 EWP----------SIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPY-SREQILEIISQKLKQT-------- 383 (490)
Q Consensus 323 ~~~----------~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pl-s~~e~~~il~~~l~~~-------- 383 (490)
... .....++++|+++|.. ...|.++|..||++ .+...++ +.++..+|+.+.+.-.
T Consensus 169 aeG~n~vereGisi~hpa~fvligTmNPE--eGeLrpqLlDRfg~---~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~ 243 (423)
T COG1239 169 AEGVNDVEREGISIRHPARFLLIGTMNPE--EGELRPQLLDRFGL---EVDTHYPLDLEERVEIIRRRLAFEAVPEAFLE 243 (423)
T ss_pred HhCCceeeeCceeeccCccEEEEeecCcc--ccccchhhHhhhcc---eeeccCCCCHHHHHHHHHHHHHhhcCcHHHHH
Confidence 653 1246789999999976 35677899999996 4555544 4666667666655422
Q ss_pred -------------------CCCCCCCHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHH
Q psy200 384 -------------------DKFNMFNASALQLLAGKVAAVS-GDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGV 443 (490)
Q Consensus 384 -------------------~~~~~~~~~~i~~i~~~i~~~~-Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a 443 (490)
.....+++++...|+....... .+.|..+-+.+.+..+|...| ...|+.+++..+
T Consensus 244 ~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~G-----r~~v~~~Di~~a 318 (423)
T COG1239 244 KYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRG-----RTEVEEEDIREA 318 (423)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcC-----ceeeehhhHHHH
Confidence 1334556666666665333322 235666667777777777777 667888888888
Q ss_pred HHHhccC
Q psy200 444 ISSVYCT 450 (490)
Q Consensus 444 ~~~~~~~ 450 (490)
+.-....
T Consensus 319 ~~l~l~h 325 (423)
T COG1239 319 AELALLH 325 (423)
T ss_pred Hhhhhhh
Confidence 7765443
No 206
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=2.5e-09 Score=105.12 Aligned_cols=189 Identities=11% Similarity=0.088 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh---cC-CC
Q psy200 202 QLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL---KL-KP 277 (490)
Q Consensus 202 ~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l---~~-~~ 277 (490)
..+.|...+.. +.-++.++|+||.|+||+++|+.+++.+....... .-.|..+.+...+...-.-++ .. ..
T Consensus 10 ~~~~l~~~~~~---~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~--~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (325)
T PRK06871 10 TYQQITQAFQQ---GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG--DQPCGQCHSCHLFQAGNHPDFHILEPIDN 84 (325)
T ss_pred HHHHHHHHHHc---CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHhcCCCCCEEEEccccC
Confidence 33445555542 34567888999999999999999999986432110 012333322222211000000 00 01
Q ss_pred CCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhcc
Q psy200 278 GGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANV 355 (490)
Q Consensus 278 ~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~ 355 (490)
...+.+++++........ .++..|+|||++|.|....++.|...++. +...+++|.+++ -.+++++.++|||
T Consensus 85 ~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE---Pp~~~~fiL~t~---~~~~llpTI~SRC 158 (325)
T PRK06871 85 KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE---PRPNTYFLLQAD---LSAALLPTIYSRC 158 (325)
T ss_pred CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC---CCCCeEEEEEEC---ChHhCchHHHhhc
Confidence 123566666654443322 35667999999999999889999888875 344556665564 3678899999999
Q ss_pred CCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 356 TLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 356 ~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
. .+.|.+++.+++.+.|...... ++..+..++. ...|.+-.++.++
T Consensus 159 ~----~~~~~~~~~~~~~~~L~~~~~~-------~~~~~~~~~~---l~~g~p~~A~~~~ 204 (325)
T PRK06871 159 Q----TWLIHPPEEQQALDWLQAQSSA-------EISEILTALR---INYGRPLLALTFL 204 (325)
T ss_pred e----EEeCCCCCHHHHHHHHHHHhcc-------ChHHHHHHHH---HcCCCHHHHHHHh
Confidence 6 8999999999999998875321 2223333333 3445565555543
No 207
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=5.1e-10 Score=111.06 Aligned_cols=188 Identities=14% Similarity=0.144 Sum_probs=119.7
Q ss_pred HHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC--CC---
Q psy200 203 LEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL--KP--- 277 (490)
Q Consensus 203 ~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~--~~--- 277 (490)
.+.+...+. .+.-++.++|+||.|+||+++|.++++.+-....-. .-.|..+.+...+...-.-++.. +.
T Consensus 11 ~~~l~~~~~---~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~--~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (334)
T PRK07993 11 YEQLVGSYQ---AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQG--HKSCGHCRGCQLMQAGTHPDYYTLTPEKGK 85 (334)
T ss_pred HHHHHHHHH---cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 344444444 245677888999999999999999999985321100 01233332222221100000000 11
Q ss_pred CCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhcc
Q psy200 278 GGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANV 355 (490)
Q Consensus 278 ~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~ 355 (490)
...+.+++++........ .++..|+|||++|.|.....+.|..+++.+ ..+.+||.+++ -.+++++.++|||
T Consensus 86 ~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~---~~~~lLpTIrSRC 159 (334)
T PRK07993 86 SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP---PENTWFFLACR---EPARLLATLRSRC 159 (334)
T ss_pred ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC---CCCeEEEEEEC---ChhhChHHHHhcc
Confidence 124566776655544322 256779999999999998899999888754 44566665564 3688899999999
Q ss_pred CCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 356 TLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 356 ~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
. .+.|.+++.+++...|.... .++++....+++ ...|++..|++++
T Consensus 160 q----~~~~~~~~~~~~~~~L~~~~-------~~~~~~a~~~~~---la~G~~~~Al~l~ 205 (334)
T PRK07993 160 R----LHYLAPPPEQYALTWLSREV-------TMSQDALLAALR---LSAGAPGAALALL 205 (334)
T ss_pred c----cccCCCCCHHHHHHHHHHcc-------CCCHHHHHHHHH---HcCCCHHHHHHHh
Confidence 6 79999999999998887531 245555555544 5667788777664
No 208
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.18 E-value=9.8e-11 Score=104.33 Aligned_cols=155 Identities=19% Similarity=0.289 Sum_probs=89.8
Q ss_pred ChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh---c
Q psy200 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL---K 274 (490)
Q Consensus 198 gre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l---~ 274 (490)
|+++.++.|...+.. +.-++.++|+||.|+||+++|..+++.+-....... .|....+...+...-..++ .
T Consensus 1 gq~~~~~~L~~~~~~---~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~---~c~~c~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS---GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED---PCGECRSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHC---TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-----SSSHHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHc---CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---CCCCCHHHHHHHhccCcceEEEe
Confidence 677788887777763 345667899999999999999999998853221100 2222211111110000000 0
Q ss_pred CCCC--CCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHH
Q psy200 275 LKPG--GKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPR 350 (490)
Q Consensus 275 ~~~~--~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~ 350 (490)
.... ....+++++........ .+..-|+||||+|.|....+++|+..++.+ ...+++|.+++ ..+++++.
T Consensus 75 ~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep---p~~~~fiL~t~---~~~~il~T 148 (162)
T PF13177_consen 75 PDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP---PENTYFILITN---NPSKILPT 148 (162)
T ss_dssp TTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST---TTTEEEEEEES----GGGS-HH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC---CCCEEEEEEEC---ChHHChHH
Confidence 0111 23456666444332221 245779999999999999999999999854 34555555565 36788999
Q ss_pred hhhccCCCCeeEEeCCCC
Q psy200 351 LQANVTLQPTLMNFAPYS 368 (490)
Q Consensus 351 l~~R~~~~~~~i~~~pls 368 (490)
+++||. .+.|.+++
T Consensus 149 I~SRc~----~i~~~~ls 162 (162)
T PF13177_consen 149 IRSRCQ----VIRFRPLS 162 (162)
T ss_dssp HHTTSE----EEEE----
T ss_pred HHhhce----EEecCCCC
Confidence 999995 89998875
No 209
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.8e-09 Score=101.54 Aligned_cols=151 Identities=16% Similarity=0.266 Sum_probs=101.3
Q ss_pred eEEEEEecCccccccC------------HHHHHHhHhCC-------CCCCCcEEEEEecC-CCChhHhhhHHhhhccCCC
Q psy200 299 SILLILDEIDALESRK------------QTILYTIFEWP-------SIPGSKLVLVGVAN-ALDLTDRMLPRLQANVTLQ 358 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~------------~~~L~~l~~~~-------~~~~~~vilI~~tn-~~~~~~~l~~~l~~R~~~~ 358 (490)
.-+|||||||.+.... |.-|+-+++-. ......++||++.. +..-+..+.|.|+.||.+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI- 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI- 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce-
Confidence 4499999999997542 22222222211 12345677887664 334467788999999985
Q ss_pred CeeEEeCCCCHHHHHHHHHH-----------HHhccCCCCCCCHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHH
Q psy200 359 PTLMNFAPYSREQILEIISQ-----------KLKQTDKFNMFNASALQLLAGKVAAVSG-----DIRKAIDITNHLIDLT 422 (490)
Q Consensus 359 ~~~i~~~pls~~e~~~il~~-----------~l~~~~~~~~~~~~~i~~i~~~i~~~~G-----d~r~ai~ll~~a~~~a 422 (490)
++.+.+++.+++..||.. .+..++....|++++|+.|++..+.... +.|++..++++.++-.
T Consensus 330 --RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLedi 407 (444)
T COG1220 330 --RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDI 407 (444)
T ss_pred --EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHh
Confidence 899999999999988642 2233356778999999999996655443 4788877888776543
Q ss_pred H-hccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 423 Y-DNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 423 ~-~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
. .-.....+.-.|+.+.|..-+.++..+..
T Consensus 408 SFeA~d~~g~~v~Id~~yV~~~l~~l~~n~D 438 (444)
T COG1220 408 SFEAPDMSGQKVTIDAEYVEEKLGDLVANED 438 (444)
T ss_pred CccCCcCCCCeEEEcHHHHHHHHHHHhcccc
Confidence 2 21111123567999999999988876543
No 210
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.15 E-value=1.3e-10 Score=103.84 Aligned_cols=135 Identities=18% Similarity=0.206 Sum_probs=86.7
Q ss_pred CCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC
Q psy200 196 LPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL 275 (490)
Q Consensus 196 lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~ 275 (490)
++|....+.++.+.+.... ....+|+|+|++||||+.+|+++++.. ...+-+|+.+||..+ +...+-.+++..-..
T Consensus 1 liG~s~~m~~~~~~~~~~a--~~~~pVlI~GE~GtGK~~lA~~IH~~s-~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA--SSDLPVLITGETGTGKELLARAIHNNS-PRKNGPFISVNCAAL-PEELLESELFGHEKG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT--TSTS-EEEECSTTSSHHHHHHHHHHCS-TTTTS-EEEEETTTS--HHHHHHHHHEBCSS
T ss_pred CEeCCHHHHHHHHHHHHHh--CCCCCEEEEcCCCCcHHHHHHHHHHhh-hcccCCeEEEehhhh-hcchhhhhhhccccc
Confidence 5788888888888888743 456899999999999999999997743 234568999999987 444444445443322
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC--------CCCCcEEEEEecCC
Q psy200 276 KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS--------IPGSKLVLVGVANA 340 (490)
Q Consensus 276 ~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~--------~~~~~vilI~~tn~ 340 (490)
.+.+..... ...|..+-. | +||||||+.|....|..|.++++... ....++.+|++|+.
T Consensus 77 ~~~~~~~~~-~G~l~~A~~--G---tL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 77 AFTGARSDK-KGLLEQANG--G---TLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp SSTTTSSEB-EHHHHHTTT--S---EEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccc-CCceeeccc--e---EEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 222221111 133333221 2 99999999999999999999886431 11347888888873
No 211
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.15 E-value=1.5e-09 Score=114.45 Aligned_cols=232 Identities=15% Similarity=0.184 Sum_probs=141.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc--------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN--------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~--------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
..++|++.....+.-.|-..... ...-++||+|+||+|||++++.+++... ...|+..... +...+
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~-----r~~~~~~~~~-~~~~l 276 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAP-----RAVYTTGKGS-SAVGL 276 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcC-----cceEcCCCCC-CcCCc
Confidence 78999998876665555321100 0113899999999999999999988653 1123321100 10000
Q ss_pred HHHHHHHhcCCCCCCcHHHHH-HHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------CCCcEEE
Q psy200 266 YETIVNELKLKPGGKSERHQL-GAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI----------PGSKLVL 334 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~-~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~----------~~~~vil 334 (490)
.... +.....|.- .+. ..+. +.. .-+++|||++.+....|..|...++.... ...++.+
T Consensus 277 ~~~~---~~~~~~g~~--~~~~G~l~--~A~---~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 277 TAAV---TRDPETREF--TLEGGALV--LAD---NGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred cccc---eEccCcceE--EecCccEE--ecC---CCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 0000 000000000 000 0000 111 22999999999999889999888764321 2367889
Q ss_pred EEecCCCChh--------H--hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc---------------------
Q psy200 335 VGVANALDLT--------D--RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--------------------- 383 (490)
Q Consensus 335 I~~tn~~~~~--------~--~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--------------------- 383 (490)
|+++|..+-. + .+.+.+.+||++ ..+.+++++.+.-.+++.+.+..+
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdL--i~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 424 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILSRFDL--LFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLR 424 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhCceee--EEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHH
Confidence 9999965321 1 356788899986 345556777776666666543211
Q ss_pred -------C-CCCCCCHHHHHHHHHHHHHhhC-------------CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHH
Q psy200 384 -------D-KFNMFNASALQLLAGKVAAVSG-------------DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLG 442 (490)
Q Consensus 384 -------~-~~~~~~~~~i~~i~~~i~~~~G-------------d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~ 442 (490)
. ....+++++.+.|.+.+..... .+|.++.+++.|-..|..+. ...|+.+|+..
T Consensus 425 ~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~-----r~~V~~~Dv~~ 499 (509)
T smart00350 425 KYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRL-----SDVVEEADVEE 499 (509)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcC-----CCccCHHHHHH
Confidence 0 1245788888888775533221 47778889998988999998 78999999999
Q ss_pred HHHHhc
Q psy200 443 VISSVY 448 (490)
Q Consensus 443 a~~~~~ 448 (490)
|+.-+.
T Consensus 500 ai~l~~ 505 (509)
T smart00350 500 AIRLLR 505 (509)
T ss_pred HHHHHH
Confidence 987654
No 212
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.14 E-value=2e-09 Score=124.41 Aligned_cols=200 Identities=19% Similarity=0.305 Sum_probs=120.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc-eEEEEeccCCC---------C--
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF-KTIYINCNSVR---------N-- 261 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~-~~~~v~~~~~~---------~-- 261 (490)
++++|++..+++|..+|.- .....+.+.|+|++|+||||+|+++++.+. ..| ..++++..... +
T Consensus 184 ~~~vG~~~~l~~l~~lL~l--~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHL--ESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccchHHHHHHHHHHHcc--ccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 6899999999999988853 345677899999999999999999999875 233 22333221000 0
Q ss_pred ----HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEe
Q psy200 262 ----AASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGV 337 (490)
Q Consensus 262 ----~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~ 337 (490)
...+...++.++-.... ...... ..+.+.+. +++++|||||+|... ..+.+....+|. ..+++||+ +
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~-~~~~~~-~~~~~~L~--~krvLLVLDdv~~~~--~l~~L~~~~~~~-~~GsrIIi--T 330 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKD-IKIYHL-GAMEERLK--HRKVLIFIDDLDDQD--VLDALAGQTQWF-GSGSRIIV--I 330 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCC-cccCCH-HHHHHHHh--CCeEEEEEeCCCCHH--HHHHHHhhCccC-CCCcEEEE--E
Confidence 01122233333211110 101011 23333344 578999999998642 123333333332 23455544 3
Q ss_pred cCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy200 338 ANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNH 417 (490)
Q Consensus 338 tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~ 417 (490)
|....+ . ...+.. ..+.+..++.++.++++..++... ...++.+..+++.++..+|+++.|+.++..
T Consensus 331 Trd~~v----l----~~~~~~-~~~~v~~l~~~ea~~LF~~~Af~~----~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs 397 (1153)
T PLN03210 331 TKDKHF----L----RAHGID-HIYEVCLPSNELALEMFCRSAFKK----NSPPDGFMELASEVALRAGNLPLGLNVLGS 397 (1153)
T ss_pred eCcHHH----H----HhcCCC-eEEEecCCCHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 432111 1 111111 378999999999999999877543 123455777888888999999999988765
Q ss_pred HH
Q psy200 418 LI 419 (490)
Q Consensus 418 a~ 419 (490)
.+
T Consensus 398 ~L 399 (1153)
T PLN03210 398 YL 399 (1153)
T ss_pred HH
Confidence 54
No 213
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.14 E-value=5.1e-10 Score=117.17 Aligned_cols=228 Identities=18% Similarity=0.186 Sum_probs=143.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|.......+.+.+... ......++|+|++|+||+++++.+..... .....++.++|..+. ...+-..++..-
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~--a~~~~~vli~Ge~GtGK~~lA~~ih~~s~-~~~~~~~~i~c~~~~-~~~~~~~lfg~~ 218 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKI--ALSQASVLISGESGTGKELIARAIHYNSR-RAKGPFIKVNCAALP-ESLLESELFGHE 218 (457)
T ss_pred cceecccHHHhHHHHHHHHH--cCCCcEEEEEcCCCccHHHHHHHHHHhCC-CCCCCeEEEECCCCC-HHHHHHHhcCCC
Confidence 34777777777777666553 24567899999999999999999977543 234578999999874 222222222211
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
...+.+..... ... +... ..-+||||||+.|....|..|..+++.... ....+.+|++++.. +..
T Consensus 219 ~~~~~~~~~~~-~g~----~~~a-~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~-l~~ 291 (457)
T PRK11361 219 KGAFTGAQTLR-QGL----FERA-NEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD-LQA 291 (457)
T ss_pred CCCCCCCCCCC-CCc----eEEC-CCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC-HHH
Confidence 11111111000 001 1111 123899999999999989888888764321 12346788877632 211
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CC-CCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DK-FNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~-~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+.+.+..|+.. ..|.++|+. .+++..++.+++... +. ...+++++++.+.. +.|.||++++-+
T Consensus 292 ~~~~g~~~~~l~~~l~~--~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~--~~wpgNv~eL~~ 367 (457)
T PRK11361 292 MVKEGTFREDLFYRLNV--IHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTA--WSWPGNIRELSN 367 (457)
T ss_pred HHHcCCchHHHHHHhcc--ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHc--CCCCCcHHHHHH
Confidence 233455555543 368888887 466666665555443 22 24689999999987 889999999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++++++..+. + ..|+.+++...+
T Consensus 368 ~~~~~~~~~~--~------~~i~~~~l~~~~ 390 (457)
T PRK11361 368 VIERAVVMNS--G------PIIFSEDLPPQI 390 (457)
T ss_pred HHHHHHHhCC--C------CcccHHHChHhh
Confidence 9999886543 2 357777775433
No 214
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=4.5e-09 Score=103.20 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH-HHHH---hc-C
Q psy200 201 VQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET-IVNE---LK-L 275 (490)
Q Consensus 201 ~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~-i~~~---l~-~ 275 (490)
...+.+...+.. +.-++.++|+||.|+||+++|.++++.+-..... .|..... ..++.. -.-+ +. .
T Consensus 11 ~~~~~l~~~~~~---~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~-----~~~~c~~-c~~~~~g~HPD~~~i~~~ 81 (319)
T PRK08769 11 RAYDQTVAALDA---GRLGHGLLICGPEGLGKRAVALALAEHVLASGPD-----PAAAQRT-RQLIAAGTHPDLQLVSFI 81 (319)
T ss_pred HHHHHHHHHHHc---CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCC-----CCCcchH-HHHHhcCCCCCEEEEecC
Confidence 444455555542 3455679999999999999999999988532210 0000000 000000 0000 00 0
Q ss_pred CC-------CCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHh
Q psy200 276 KP-------GGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDR 346 (490)
Q Consensus 276 ~~-------~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~ 346 (490)
+. .....+.+++........ .++..|+|||++|.|.....+.|.++++.+ ...++||.+++ -.++
T Consensus 82 p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~~~fiL~~~---~~~~ 155 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP---SPGRYLWLISA---QPAR 155 (319)
T ss_pred CCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC---CCCCeEEEEEC---Chhh
Confidence 00 012344555444333221 245679999999999998899999888754 33444444454 2677
Q ss_pred hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 347 MLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 347 l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
+++.++|||. .+.|.+++.+++...|... .+++.....++. ...|.+..++.++
T Consensus 156 lLpTIrSRCq----~i~~~~~~~~~~~~~L~~~--------~~~~~~a~~~~~---l~~G~p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRSRCQ----RLEFKLPPAHEALAWLLAQ--------GVSERAAQEALD---AARGHPGLAAQWL 209 (319)
T ss_pred CchHHHhhhe----EeeCCCcCHHHHHHHHHHc--------CCChHHHHHHHH---HcCCCHHHHHHHh
Confidence 8999999996 8999999999999888752 134443444443 4566666666544
No 215
>KOG1968|consensus
Probab=99.13 E-value=1.2e-10 Score=126.83 Aligned_cols=216 Identities=18% Similarity=0.187 Sum_probs=152.2
Q ss_pred cCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhcc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 178 LFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNN-----------ETSG-SMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~-----------~~~~-~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
..|.+.|++... .++.|.......+..||..+-.. .... .++++|+||+|||+.+..++..++
T Consensus 308 ~~~~~k~~p~~~----k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g- 382 (871)
T KOG1968|consen 308 AGWTEKYQPTSS----KALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELG- 382 (871)
T ss_pred cccccccccccH----HhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcc-
Confidence 478888888876 78888888888899999876110 0112 478999999999999999999976
Q ss_pred cCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCC
Q psy200 246 KDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWP 325 (490)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~ 325 (490)
+.++..|....++...+...+....+.... ..............+..+||++||+|-++..+...+..+..+.
T Consensus 383 ---~~v~E~Nas~~RSk~~l~~~~~~~~~s~si----~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~ 455 (871)
T KOG1968|consen 383 ---FKVVEKNASDVRSKKELLNKLGNATSSHSI----KGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLC 455 (871)
T ss_pred ---cceeecCccccccccHHHhhhhccccccch----hhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHH
Confidence 899999999998888877776665443222 1111111111111244669999999999985555555544433
Q ss_pred CCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhh
Q psy200 326 SIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVS 405 (490)
Q Consensus 326 ~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~ 405 (490)
. ....-+|+++|..+++. ...+.+.| ..++|..++.+.+...+...+..+ ...++++.++.+.. ...
T Consensus 456 ~--ks~~Piv~~cndr~~p~--sr~~~~~~----~~l~f~kP~~~~i~~ri~si~~se--~~ki~~~~l~~~s~---~~~ 522 (871)
T KOG1968|consen 456 K--KSSRPLVCTCNDRNLPK--SRALSRAC----SDLRFSKPSSELIRSRIMSICKSE--GIKISDDVLEEISK---LSG 522 (871)
T ss_pred H--hccCCeEEEecCCCCcc--ccchhhhc----ceeeecCCcHHHHHhhhhhhhccc--ceecCcHHHHHHHH---hcc
Confidence 2 34455666677544333 12222222 269999999999999999999887 56689999999987 778
Q ss_pred CCHHHHHHHHHHH
Q psy200 406 GDIRKAIDITNHL 418 (490)
Q Consensus 406 Gd~r~ai~ll~~a 418 (490)
||+|+.|+.++.-
T Consensus 523 ~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 523 GDIRQIIMQLQFW 535 (871)
T ss_pred cCHHHHHHHHhhh
Confidence 9999999877665
No 216
>KOG0743|consensus
Probab=99.10 E-value=4e-09 Score=104.86 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=103.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC---------CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE---------TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~---------~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+.++--.+..+.|.+-|...+++. =.++-|||||||||||+++.++|+.+. |.+.-++.....+
T Consensus 201 ~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 201 ETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKL--- 273 (457)
T ss_pred cccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccC---
Confidence 556665555555555555444332 126899999999999999999999987 6665565544322
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC------------------HHHHHHhHhCC-
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK------------------QTILYTIFEWP- 325 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~------------------~~~L~~l~~~~- 325 (490)
-.++ .+.+..-....||+|+|||.-.... ...|+++++..
T Consensus 274 -----------------n~dL----r~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw 332 (457)
T KOG0743|consen 274 -----------------DSDL----RHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW 332 (457)
T ss_pred -----------------cHHH----HHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccc
Confidence 1123 3333333456799999999874321 12455555532
Q ss_pred CCCCCcEEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhcc
Q psy200 326 SIPGSKLVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQT 383 (490)
Q Consensus 326 ~~~~~~vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~ 383 (490)
...+.-=|+|.+|| ..++++|+|.+ |+. .+|++.-=+.+..+.++.+++...
T Consensus 333 Sscg~ERIivFTTN---h~EkLDPALlRpGRmD---mhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 333 SSCGDERIIVFTTN---HKEKLDPALLRPGRMD---MHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred ccCCCceEEEEecC---ChhhcCHhhcCCCcce---eEEEcCCCCHHHHHHHHHHhcCCC
Confidence 22223345667787 46788888887 555 479999999999999999998764
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.09 E-value=4.1e-11 Score=104.12 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=76.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeE
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSI 300 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~ 300 (490)
+|+|+||||+|||++++.+++.+. ..++.++|....+..+++..+.-. ... ...... .+..++ .+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~----~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~~~----~l~~a~---~~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG----RPVIRINCSSDTTEEDLIGSYDPS-NGQ-FEFKDG----PLVRAM---RKGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT----CEEEEEE-TTTSTHHHHHCEEET--TTT-TCEEE-----CCCTTH---HEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh----cceEEEEeccccccccceeeeeec-ccc-cccccc----cccccc---ccee
Confidence 589999999999999999999984 678889999888877775432111 000 000000 001111 1477
Q ss_pred EEEEecCccccccCHHHHHHhHhCCCC----------CCC------cEEEEEecCCCC-hhHhhhHHhhhcc
Q psy200 301 LLILDEIDALESRKQTILYTIFEWPSI----------PGS------KLVLVGVANALD-LTDRMLPRLQANV 355 (490)
Q Consensus 301 vI~IDEid~l~~~~~~~L~~l~~~~~~----------~~~------~vilI~~tn~~~-~~~~l~~~l~~R~ 355 (490)
++||||++......+..|..+++.... ... .+.+|+++|..+ ....+.+++++||
T Consensus 68 il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred EEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999999886666667666543211 011 389999999766 4456778888886
No 218
>PF05729 NACHT: NACHT domain
Probab=99.08 E-value=3.8e-09 Score=94.22 Aligned_cols=149 Identities=23% Similarity=0.426 Sum_probs=88.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhhhcCC-----ceEEEEeccCCCCHH---HHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAEIKDA-----FKTIYINCNSVRNAA---SVYETIVNELKLKPGGKSERHQLGAILK 291 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~~~~~-----~~~~~v~~~~~~~~~---~l~~~i~~~l~~~~~~~s~~~~~~~l~~ 291 (490)
+.++|+|++|+|||++++.++..+..... ..++++++....... .+...|...+... .......+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHHHHHH
Confidence 46899999999999999999998864331 234455555553322 2333333333221 1111222333
Q ss_pred HHhcCCCeEEEEEecCccccccCHH--------HHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEE
Q psy200 292 YFDTKHKSILLILDEIDALESRKQT--------ILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMN 363 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~~~~~--------~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~ 363 (490)
... ...+++||||.+|.+...... .+..++......+.++++.+.+.. ...+...+.. . ..+.
T Consensus 76 ~~~-~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~---~~~~~~~~~~-~----~~~~ 146 (166)
T PF05729_consen 76 LLE-KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRA---FPDLRRRLKQ-A----QILE 146 (166)
T ss_pred HHH-cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCCh---HHHHHHhcCC-C----cEEE
Confidence 333 356889999999999875332 344444432234566666554431 1122222221 1 3799
Q ss_pred eCCCCHHHHHHHHHHHHhc
Q psy200 364 FAPYSREQILEIISQKLKQ 382 (490)
Q Consensus 364 ~~pls~~e~~~il~~~l~~ 382 (490)
+.+++.+++..++++.+..
T Consensus 147 l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 147 LEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred ECCCCHHHHHHHHHHHhhc
Confidence 9999999999999988753
No 219
>PRK08116 hypothetical protein; Validated
Probab=99.06 E-value=2e-09 Score=103.79 Aligned_cols=150 Identities=18% Similarity=0.190 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhhcc-CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCC
Q psy200 202 QLEGIRQFLLGHVNN-ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGK 280 (490)
Q Consensus 202 ~~~~l~~~L~~~~~~-~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~ 280 (490)
.+..+..++..+... ..+.+++|+|++|+|||+|+.++++++... +..+++++ ..+++..+...+..... .
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~~~-~ 167 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN------FPQLLNRIKSTYKSSGK-E 167 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE------HHHHHHHHHHHHhcccc-c
Confidence 344555555544322 234579999999999999999999998643 56777775 34455555444332111 1
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEEecCcc--ccccCHHHHHHhHhCCCCCCCcEEEEEecCC--CChhHhhhHHhhhccC
Q psy200 281 SERHQLGAILKYFDTKHKSILLILDEIDA--LESRKQTILYTIFEWPSIPGSKLVLVGVANA--LDLTDRMLPRLQANVT 356 (490)
Q Consensus 281 s~~~~~~~l~~~l~~~~~~~vI~IDEid~--l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~--~~~~~~l~~~l~~R~~ 356 (490)
...++ + +.+.. .-+|||||++. .....++.|+.+++.....+.+ +|.+||. .++...+..++.+|+.
T Consensus 168 ~~~~~---~-~~l~~---~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~--~IiTsN~~~~eL~~~~~~ri~sRl~ 238 (268)
T PRK08116 168 DENEI---I-RSLVN---ADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLP--TIVTTNLSLEELKNQYGKRIYDRIL 238 (268)
T ss_pred cHHHH---H-HHhcC---CCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHH
Confidence 12222 2 22322 23999999954 3444567788887754333334 4444653 2444445567777742
Q ss_pred CCCeeEEeCCCC
Q psy200 357 LQPTLMNFAPYS 368 (490)
Q Consensus 357 ~~~~~i~~~pls 368 (490)
-....+.|...+
T Consensus 239 e~~~~v~~~g~d 250 (268)
T PRK08116 239 EMCTPVENEGKS 250 (268)
T ss_pred HcCEEEEeeCcC
Confidence 111357776655
No 220
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.2e-08 Score=96.72 Aligned_cols=213 Identities=16% Similarity=0.249 Sum_probs=131.2
Q ss_pred HhhcCCCCCCChHHHHHHHHHHHHhhhc----c-C------CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 188 EKAKDSCELPGREVQLEGIRQFLLGHVN----N-E------TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 188 ~~~l~~~~lvgre~~~~~l~~~L~~~~~----~-~------~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
+..|. +.++|++...+-|.-.+.+..+ . . ...++++.||.|+|||.||+.+++.+. ++|.-.++
T Consensus 56 k~~Ld-~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln----VPFaiADA 130 (408)
T COG1219 56 KAHLD-EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN----VPFAIADA 130 (408)
T ss_pred HHHhh-hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC----CCeeeccc
Confidence 33344 7788888877665443333211 0 1 235899999999999999999999986 67777776
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc---CCCeEEEEEecCccccccC--------------HHHHH
Q psy200 257 NSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT---KHKSILLILDEIDALESRK--------------QTILY 319 (490)
Q Consensus 257 ~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~---~~~~~vI~IDEid~l~~~~--------------~~~L~ 319 (490)
..+... .+.|...+++...|.++... ...+-+|+|||||.+.... |.+|+
T Consensus 131 TtLTEA-------------GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALL 197 (408)
T COG1219 131 TTLTEA-------------GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALL 197 (408)
T ss_pred cchhhc-------------cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHH
Confidence 655321 34555566655444433211 0123399999999997653 56777
Q ss_pred HhHhCC------------------CCCCCcEEEEEecCCCCh-------------------------------hHh----
Q psy200 320 TIFEWP------------------SIPGSKLVLVGVANALDL-------------------------------TDR---- 346 (490)
Q Consensus 320 ~l~~~~------------------~~~~~~vilI~~tn~~~~-------------------------------~~~---- 346 (490)
.+++-. .....+++|||......+ ...
T Consensus 198 KiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepe 277 (408)
T COG1219 198 KIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPE 277 (408)
T ss_pred HHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChH
Confidence 776421 113456666654321111 000
Q ss_pred ------hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHH-----------HHhccCCCCCCCHHHHHHHHHHHHHhhCCHH
Q psy200 347 ------MLPRLQANVTLQPTLMNFAPYSREQILEIISQ-----------KLKQTDKFNMFNASALQLLAGKVAAVSGDIR 409 (490)
Q Consensus 347 ------l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~-----------~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r 409 (490)
+.|.+-.|+. ..-.+.+++.+++..||.. .+...+....|+++++..|+++.....-+.|
T Consensus 278 DLvkFGLIPEfIGRlP---via~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGAR 354 (408)
T COG1219 278 DLVKFGLIPEFIGRLP---VIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGAR 354 (408)
T ss_pred HHHHcCCcHHHhcccc---eeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchh
Confidence 1244444554 3678899999998887642 2223355677999999999988766666666
Q ss_pred HHHHHHHHHHHH
Q psy200 410 KAIDITNHLIDL 421 (490)
Q Consensus 410 ~ai~ll~~a~~~ 421 (490)
.+-.+++..+.-
T Consensus 355 GLRsI~E~~lld 366 (408)
T COG1219 355 GLRSIIEELLLD 366 (408)
T ss_pred HHHHHHHHHHHH
Confidence 665566655543
No 221
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.04 E-value=1.8e-09 Score=112.52 Aligned_cols=227 Identities=18% Similarity=0.229 Sum_probs=141.1
Q ss_pred CCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc
Q psy200 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK 274 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~ 274 (490)
.++|.......+...+.. .......++|+|.+|+||+++++++..... ....+++.++|.... ...+-..++..-.
T Consensus 140 ~lig~s~~~~~~~~~i~~--~~~~~~~vli~ge~g~gk~~~a~~ih~~s~-~~~~~~i~~~c~~~~-~~~~~~~lfg~~~ 215 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL--VAPSEATVLIHGDSGTGKELVARAIHASSA-RSEKPLVTLNCAALN-ESLLESELFGHEK 215 (441)
T ss_pred ceEecCHHHHHHHHHHhh--ccCCCCeEEEEecCCCCHHHHHHHHHHcCC-CCCCCeeeeeCCCCC-HHHHHHHhcCCCC
Confidence 356666666666555543 234567899999999999999999976542 344588999999763 2222222222111
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH-
Q psy200 275 LKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD- 345 (490)
Q Consensus 275 ~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~- 345 (490)
+.+.+.... ....+. .. ..-+||||||+.|....|..|..+++.... ....+.+|++++.. +..
T Consensus 216 ~~~~~~~~~-~~g~~~---~a--~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~-~~~~ 288 (441)
T PRK10365 216 GAFTGADKR-REGRFV---EA--DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD-LAAE 288 (441)
T ss_pred CCcCCCCcC-CCCcee---EC--CCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC-HHHH
Confidence 111111000 000111 11 133899999999999889888887764321 12346677777632 222
Q ss_pred ----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CC-CCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 346 ----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DK-FNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 346 ----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~-~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
.+.+.+..|+.. ..+.++|+. .+++..++.+.+... +. ...+++++++.+.. +.|.||+|++.++
T Consensus 289 ~~~~~~~~~l~~~l~~--~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~--~~wpgN~reL~~~ 364 (441)
T PRK10365 289 VNAGRFRQDLYYRLNV--VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH--YDWPGNIRELENA 364 (441)
T ss_pred HHcCCchHHHHHHhcc--ceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh--CCCCCHHHHHHHH
Confidence 233455555543 367888887 346777766666543 21 23489999999987 7899999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
+++++..+. + ..|+.+++...+
T Consensus 365 ~~~~~~~~~--~------~~i~~~~l~~~~ 386 (441)
T PRK10365 365 VERAVVLLT--G------EYISERELPLAI 386 (441)
T ss_pred HHHHHHhCC--C------CccchHhCchhh
Confidence 999886543 2 357777775443
No 222
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.03 E-value=4.7e-09 Score=108.81 Aligned_cols=232 Identities=15% Similarity=0.162 Sum_probs=134.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHH---HH-
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYE---TI- 269 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~---~i- 269 (490)
.++.|+...++.+.- ....+.+++|+|++|+|||++++.+...+.....-.. +.+..+.+...... .+
T Consensus 191 ~~v~Gq~~~~~al~l------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~--le~~~i~s~~g~~~~~~~~~ 262 (506)
T PRK09862 191 SDVIGQEQGKRGLEI------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEA--LESAAILSLVNAESVQKQWR 262 (506)
T ss_pred EEEECcHHHHhhhhe------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEE--EecchhhhhhccccccCCcC
Confidence 456677665554322 2245789999999999999999999876642211112 22222111100000 00
Q ss_pred HHHhcCCCCCCcHHHHHH--------HHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------CCCc
Q psy200 270 VNELKLKPGGKSERHQLG--------AILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI----------PGSK 331 (490)
Q Consensus 270 ~~~l~~~~~~~s~~~~~~--------~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~----------~~~~ 331 (490)
..-+..+.+..+...+.. .+. +.. .-+|||||++.+....++.|.+.++.... ...+
T Consensus 263 ~rPfr~ph~~~s~~~l~GGg~~~~pG~l~--~A~---gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~ 337 (506)
T PRK09862 263 QRPFRSPHHSASLTAMVGGGAIPGPGEIS--LAH---NGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPAR 337 (506)
T ss_pred CCCccCCCccchHHHHhCCCceehhhHhh--hcc---CCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCC
Confidence 000111111122222111 111 111 22999999999998888888888754432 2467
Q ss_pred EEEEEecCCCC------------------hhHhhhHHhhhccCCCCeeEEeCCCCHHH-------------HH-HHH---
Q psy200 332 LVLVGVANALD------------------LTDRMLPRLQANVTLQPTLMNFAPYSREQ-------------IL-EII--- 376 (490)
Q Consensus 332 vilI~~tn~~~------------------~~~~l~~~l~~R~~~~~~~i~~~pls~~e-------------~~-~il--- 376 (490)
+.+|+++|... +..++...+.+||++ .+.+++++.++ +. .++
T Consensus 338 f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL---~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar 414 (506)
T PRK09862 338 FQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDL---SLEIPLPPPGILSKTVVPGESSATVKQRVMAAR 414 (506)
T ss_pred EEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccE---EEEeCCCCHHHHhcccCCCCChHHHHHHHhhHH
Confidence 89999998542 113456788899986 67788774332 22 111
Q ss_pred ---HHH---Hhcc------CCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 377 ---SQK---LKQT------DKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 377 ---~~~---l~~~------~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
..+ +... ...+.+++++.+.+........-..|....+++-|..+|..++ ...|+.+||.+|+
T Consensus 415 ~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g-----~~~V~~~hv~eAl 489 (506)
T PRK09862 415 ERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQ-----SDIITRQHLQEAV 489 (506)
T ss_pred HHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 111 0000 0123455566555554333444468888899999999999999 7899999999999
Q ss_pred HH
Q psy200 445 SS 446 (490)
Q Consensus 445 ~~ 446 (490)
.=
T Consensus 490 ~y 491 (506)
T PRK09862 490 SY 491 (506)
T ss_pred Hh
Confidence 63
No 223
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.02 E-value=2.6e-09 Score=102.41 Aligned_cols=213 Identities=15% Similarity=0.183 Sum_probs=136.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+.+++.....+.+....... .--...++|.|+.||||-.+|++... .....+.+|+.+||..++... .-.+++
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~--AmlDAPLLI~GeTGTGKdLlAkaCH~-~S~R~~~pFlalNCA~lPe~~-aEsElF--- 276 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKL--AMLDAPLLITGETGTGKDLLAKACHL-ASPRHSKPFLALNCASLPEDA-AESELF--- 276 (511)
T ss_pred HHHhhccHHHHHHHHHHHHh--hccCCCeEEecCCCchHHHHHHHHhh-cCcccCCCeeEeecCCCchhH-hHHHHh---
Confidence 56777777777776655542 23456899999999999999998744 333455689999999985421 111111
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC--------CCCCcEEEEEecCCC--Ch
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS--------IPGSKLVLVGVANAL--DL 343 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~--------~~~~~vilI~~tn~~--~~ 343 (490)
+...| .+....+|+.+-. | .+|+|||..|...-|..|..+++-.. .-...|.|||+|... ++
T Consensus 277 -G~apg--~~gk~GffE~Ang--G---TVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~l 348 (511)
T COG3283 277 -GHAPG--DEGKKGFFEQANG--G---TVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVEL 348 (511)
T ss_pred -cCCCC--CCCccchhhhccC--C---eEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHH
Confidence 11111 1122233333221 2 89999999999988888888765331 234678899988521 11
Q ss_pred hH--hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc-----CCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 344 TD--RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT-----DKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 344 ~~--~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~-----~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
.+ .+.+.+..|+.. ..+.++|+- .+++..+.+.++.+. -..+.++++.+..+.+ +.|.||+|++-|.
T Consensus 349 v~~g~fReDLfyRLNV--Ltl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~--y~WpGNVRqL~N~ 424 (511)
T COG3283 349 VQKGKFREDLFYRLNV--LTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTR--YAWPGNVRQLKNA 424 (511)
T ss_pred HhcCchHHHHHHHhhe--eeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH--cCCCccHHHHHHH
Confidence 11 123455556652 256666665 234444433333322 2456789999999988 8999999999999
Q ss_pred HHHHHHHHHhc
Q psy200 415 TNHLIDLTYDN 425 (490)
Q Consensus 415 l~~a~~~a~~~ 425 (490)
+.+|+...+..
T Consensus 425 iyRA~s~~Eg~ 435 (511)
T COG3283 425 IYRALTLLEGY 435 (511)
T ss_pred HHHHHHHhccC
Confidence 99999887643
No 224
>PHA02244 ATPase-like protein
Probab=99.00 E-value=2.3e-08 Score=98.66 Aligned_cols=152 Identities=13% Similarity=0.169 Sum_probs=93.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..+++....+..+...+..++. ...+++|+||+|||||++|+++++.++ .+++.+++.. +...+. ...
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~lg----~pfv~In~l~--d~~~L~----G~i 163 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEALD----LDFYFMNAIM--DEFELK----GFI 163 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhC----CCEEEEecCh--HHHhhc----ccc
Confidence 4566666666555555554443 356899999999999999999999865 5667776321 111110 000
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCC--------CCCCCcEEEEEecCCCC--h
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWP--------SIPGSKLVLVGVANALD--L 343 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~--------~~~~~~vilI~~tn~~~--~ 343 (490)
...+ .. . ...|..++..+ .+|||||++.+....+..|..+++.. ...+.++.+|+++|... +
T Consensus 164 --~~~g-~~-~-dgpLl~A~~~G---gvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~ 235 (383)
T PHA02244 164 --DANG-KF-H-ETPFYEAFKKG---GLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGA 235 (383)
T ss_pred --cccc-cc-c-chHHHHHhhcC---CEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCc
Confidence 0011 00 0 01233334332 39999999999877777777766421 11346788999998531 1
Q ss_pred ------hHhhhHHhhhccCCCCeeEEeCCCCH
Q psy200 344 ------TDRMLPRLQANVTLQPTLMNFAPYSR 369 (490)
Q Consensus 344 ------~~~l~~~l~~R~~~~~~~i~~~pls~ 369 (490)
...+.+.+.+||. .+.|..+..
T Consensus 236 ~~~y~G~k~L~~AllDRFv----~I~~dyp~~ 263 (383)
T PHA02244 236 DHIYVARNKIDGATLDRFA----PIEFDYDEK 263 (383)
T ss_pred ccccCCCcccCHHHHhhcE----EeeCCCCcH
Confidence 2455788999996 788888764
No 225
>KOG0745|consensus
Probab=99.00 E-value=1.3e-08 Score=99.93 Aligned_cols=187 Identities=17% Similarity=0.279 Sum_probs=121.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc---
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT--- 295 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~--- 295 (490)
..+|||.||.|+|||.|++.+++-+. ++|+-.+|..+... .+.|+..+.+...|......
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld----VPfaIcDcTtLTQA-------------GYVGeDVEsvi~KLl~~A~~nVe 288 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD----VPFAICDCTTLTQA-------------GYVGEDVESVIQKLLQEAEYNVE 288 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC----CCeEEecccchhhc-------------ccccccHHHHHHHHHHHccCCHH
Confidence 35799999999999999999999875 88888999887321 23445555544433322110
Q ss_pred CCCeEEEEEecCccccccC--------------HHHHHHhHhCC-----C-------------CCCCcEEEEEecCCCCh
Q psy200 296 KHKSILLILDEIDALESRK--------------QTILYTIFEWP-----S-------------IPGSKLVLVGVANALDL 343 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~~--------------~~~L~~l~~~~-----~-------------~~~~~vilI~~tn~~~~ 343 (490)
..+.-|+||||+|.+.... |..|+.+++-. . +...+|+||+..-..++
T Consensus 289 kAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~L 368 (564)
T KOG0745|consen 289 KAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGL 368 (564)
T ss_pred HHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccch
Confidence 1123399999999997331 55666665411 0 12345666643321111
Q ss_pred hHh-----------------------------------------------------hhHHhhhccCCCCeeEEeCCCCHH
Q psy200 344 TDR-----------------------------------------------------MLPRLQANVTLQPTLMNFAPYSRE 370 (490)
Q Consensus 344 ~~~-----------------------------------------------------l~~~l~~R~~~~~~~i~~~pls~~ 370 (490)
... |.|.|..||- -.+.|.+++.+
T Consensus 369 dk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfP---VlVplh~L~~~ 445 (564)
T KOG0745|consen 369 DKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFP---VLVPLHSLDED 445 (564)
T ss_pred HHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccc---eEeeccccCHH
Confidence 000 2355566665 47899999999
Q ss_pred HHHHHHHH-----------HHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhc
Q psy200 371 QILEIISQ-----------KLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDN 425 (490)
Q Consensus 371 e~~~il~~-----------~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~ 425 (490)
++..+|.. .+...+.+..|++++++.|+++.....-+.|.+-.+|+.++..++-+
T Consensus 446 ~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 446 QLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 98887642 22222455679999999999977777777888778888888777654
No 226
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.1e-08 Score=100.28 Aligned_cols=161 Identities=13% Similarity=0.151 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh---cCC--
Q psy200 202 QLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL---KLK-- 276 (490)
Q Consensus 202 ~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l---~~~-- 276 (490)
..+.+...+. .+.-++.++|+||.|+||+++|+.+++.+-....- ...|..+.+...+...-.-++ ...
T Consensus 11 ~~~~l~~~~~---~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~---~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (319)
T PRK06090 11 VWQNWKAGLD---AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ---SEACGFCHSCELMQSGNHPDLHVIKPEKE 84 (319)
T ss_pred HHHHHHHHHH---cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC---CCCCCCCHHHHHHHcCCCCCEEEEecCcC
Confidence 3344455443 24456789999999999999999999988533210 012333322222111100011 000
Q ss_pred CCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhc
Q psy200 277 PGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQAN 354 (490)
Q Consensus 277 ~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R 354 (490)
....+.+++++....... ..++..|+|||++|.|.....+.|...++.+ ..+.++|.+++ -.+++++.++||
T Consensus 85 ~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~---~~~~lLpTI~SR 158 (319)
T PRK06090 85 GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP---APNCLFLLVTH---NQKRLLPTIVSR 158 (319)
T ss_pred CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC---CCCeEEEEEEC---ChhhChHHHHhc
Confidence 112345666554332221 1245679999999999998889998888754 44566666665 367889999999
Q ss_pred cCCCCeeEEeCCCCHHHHHHHHHH
Q psy200 355 VTLQPTLMNFAPYSREQILEIISQ 378 (490)
Q Consensus 355 ~~~~~~~i~~~pls~~e~~~il~~ 378 (490)
|. .+.|.+++.+++.+.+..
T Consensus 159 Cq----~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 159 CQ----QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred ce----eEeCCCCCHHHHHHHHHH
Confidence 96 899999999999988865
No 227
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=6.6e-09 Score=102.93 Aligned_cols=153 Identities=13% Similarity=0.079 Sum_probs=98.0
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHH-------------------------
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIV------------------------- 270 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~------------------------- 270 (490)
+.-++.++|+||.|+||+++|+.+++.+....... ..-.|..+.+...+...-.
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~-~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQP-DGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 45678899999999999999999999886422100 0012222211111100000
Q ss_pred --HHhcC----CCCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 271 --NELKL----KPGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 271 --~~l~~----~~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
.+-+. .......+++++........ .++..|+|||++|.|.....+.|+..++. +...++||.+|+
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE---Pp~~t~fiL~t~--- 170 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE---PPPGTVFLLVSA--- 170 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC---CCcCcEEEEEEC---
Confidence 00000 00123456666554432211 25567999999999999888999888874 445566666665
Q ss_pred hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHH
Q psy200 343 LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQK 379 (490)
Q Consensus 343 ~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~ 379 (490)
-.+.+++.+++||. .+.|.+++.+++.+.|...
T Consensus 171 ~~~~LLpTI~SRcq----~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 171 RIDRLLPTILSRCR----QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred ChhhCcHHHHhcCE----EEEecCCCHHHHHHHHHHc
Confidence 36888999999995 8999999999999998764
No 228
>KOG0736|consensus
Probab=98.97 E-value=2.4e-08 Score=104.48 Aligned_cols=253 Identities=15% Similarity=0.193 Sum_probs=148.5
Q ss_pred CCCChHHHHHHHHHHHHhhhccC-----CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 195 ELPGREVQLEGIRQFLLGHVNNE-----TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~~~~~~~-----~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
...+++..+..+..++......+ ....+||+|+||+|||+++++++.+++ ..++.++|.++..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg----~h~~evdc~el~~-------- 469 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELG----LHLLEVDCYELVA-------- 469 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhC----CceEeccHHHHhh--------
Confidence 34556666666677665432222 345789999999999999999999987 7889998887632
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------HHHHHHhHh--CCCCCCCcEEEEEecC
Q psy200 270 VNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------QTILYTIFE--WPSIPGSKLVLVGVAN 339 (490)
Q Consensus 270 ~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------~~~L~~l~~--~~~~~~~~vilI~~tn 339 (490)
...+.....+...+.++.. ..+.||||-.+|-+.... +..+..++. .......+++|||+++
T Consensus 470 ------~s~~~~etkl~~~f~~a~~--~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~ 541 (953)
T KOG0736|consen 470 ------ESASHTETKLQAIFSRARR--CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTS 541 (953)
T ss_pred ------cccchhHHHHHHHHHHHhh--cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecc
Confidence 2222344455555555544 468999999999886331 122223332 2333567899999987
Q ss_pred CCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhh-CCHHHHHHHHHH-
Q psy200 340 ALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVS-GDIRKAIDITNH- 417 (490)
Q Consensus 340 ~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~-Gd~r~ai~ll~~- 417 (490)
..+ .+-+.+++-|- ..|.++-++++|..++|+.++.... .=.+..++.+++++.... |++..+..-+-+
T Consensus 542 s~~---~lp~~i~~~f~---~ei~~~~lse~qRl~iLq~y~~~~~---~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 542 SIE---DLPADIQSLFL---HEIEVPALSEEQRLEILQWYLNHLP---LNQDVNLKQLARKTSGFSFGDLEALVAHSSLA 612 (953)
T ss_pred ccc---cCCHHHHHhhh---hhccCCCCCHHHHHHHHHHHHhccc---cchHHHHHHHHHhcCCCCHHHHHHHhcCchHH
Confidence 542 33334444333 3799999999999999999887651 112344555555332211 232222211101
Q ss_pred HHHHHHhcc-----------ccCCcccccCHHHHHHHHHHhccCc--------cccccccccCCCChHhHHHHHHHHH
Q psy200 418 LIDLTYDNV-----------KENGEVTGIGLKEVLGVISSVYCTS--------QSLHCSKDEDSFPLQQKLALASLLL 476 (490)
Q Consensus 418 a~~~a~~~~-----------~~~~~~~~It~~~v~~a~~~~~~~~--------~~~~~~~~l~~L~~~qk~vL~al~~ 476 (490)
+....+..+ .+......|+.+||.++++++.... +..+.-+.+.+|..-...+|-.|-+
T Consensus 613 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIql 690 (953)
T KOG0736|consen 613 AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQL 690 (953)
T ss_pred HHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcC
Confidence 111111111 0002246799999999999653211 1112235666776666666665544
No 229
>PF14516 AAA_35: AAA-like domain
Probab=98.97 E-value=5.9e-08 Score=96.75 Aligned_cols=204 Identities=18% Similarity=0.224 Sum_probs=124.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-----CHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-----NAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-----~~~~l~~~ 268 (490)
...+.|...-+++.+.|. .++..+.|.||..+|||+++..+.+.+.. .++.++++++.... +...++..
T Consensus 11 ~~Yi~R~~~e~~~~~~i~-----~~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIV-----QPGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CcccCchHHHHHHHHHHh-----cCCCEEEEECcccCCHHHHHHHHHHHHHH-CCCEEEEEEeecCCCcccCCHHHHHHH
Confidence 345667655566666664 34778999999999999999999988863 47888999987753 34556655
Q ss_pred HHHHh----cCCC--------CCCcHHHHHHHHHHH-HhcCCCeEEEEEecCccccccC---HHHHHHhHhCCCC-----
Q psy200 269 IVNEL----KLKP--------GGKSERHQLGAILKY-FDTKHKSILLILDEIDALESRK---QTILYTIFEWPSI----- 327 (490)
Q Consensus 269 i~~~l----~~~~--------~~~s~~~~~~~l~~~-l~~~~~~~vI~IDEid~l~~~~---~~~L~~l~~~~~~----- 327 (490)
++..+ +... ...+...+..+|.+. +....+++||+|||||.+.... .+.+..+-.|...
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 55544 3321 011334455566654 3445789999999999998743 2222222222211
Q ss_pred CCCcE--EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhh
Q psy200 328 PGSKL--VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVS 405 (490)
Q Consensus 328 ~~~~v--ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~ 405 (490)
.-.++ ++++.+.. ...... -.+-|.++ ..+.+++++.+|+..++..+ ...+++..++.|.. +.
T Consensus 165 ~~~~L~li~~~~t~~-~~~~~~---~~SPFNIg-~~i~L~~Ft~~ev~~L~~~~------~~~~~~~~~~~l~~----~t 229 (331)
T PF14516_consen 165 IWQKLRLILAGSTED-YIILDI---NQSPFNIG-QPIELPDFTPEEVQELAQRY------GLEFSQEQLEQLMD----WT 229 (331)
T ss_pred ccceEEEEEecCccc-ccccCC---CCCCcccc-cceeCCCCCHHHHHHHHHhh------hccCCHHHHHHHHH----HH
Confidence 11234 44443321 111111 12334443 36999999999999988764 23367777777765 77
Q ss_pred CCHHHHHH-HHHHH
Q psy200 406 GDIRKAID-ITNHL 418 (490)
Q Consensus 406 Gd~r~ai~-ll~~a 418 (490)
|+-+.+++ +|...
T Consensus 230 gGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 230 GGHPYLVQKACYLL 243 (331)
T ss_pred CCCHHHHHHHHHHH
Confidence 77777665 44433
No 230
>PRK12377 putative replication protein; Provisional
Probab=98.96 E-value=9.6e-09 Score=97.43 Aligned_cols=150 Identities=20% Similarity=0.246 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC
Q psy200 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP 277 (490)
Q Consensus 198 gre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~ 277 (490)
|....+..+..++..+.. ...+++|+|++|||||+|+.++++.+.. .+..+++++. .+++..+-.....
T Consensus 82 ~~~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~------~~l~~~l~~~~~~-- 150 (248)
T PRK12377 82 GQRYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTV------PDVMSRLHESYDN-- 150 (248)
T ss_pred hHHHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEH------HHHHHHHHHHHhc--
Confidence 334455556666655432 3478999999999999999999999863 3456666643 3455544433321
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccc--cccCHHHHHHhHhCCCCCCCcEEEEEecCC--CChhHhhhHHhhh
Q psy200 278 GGKSERHQLGAILKYFDTKHKSILLILDEIDAL--ESRKQTILYTIFEWPSIPGSKLVLVGVANA--LDLTDRMLPRLQA 353 (490)
Q Consensus 278 ~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l--~~~~~~~L~~l~~~~~~~~~~vilI~~tn~--~~~~~~l~~~l~~ 353 (490)
+..... .+. .+ .+.-||||||+... ....++.|+.+++.-+.....+++ +||. .++...+..++.+
T Consensus 151 -~~~~~~---~l~-~l---~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptii--tSNl~~~~l~~~~~~ri~d 220 (248)
T PRK12377 151 -GQSGEK---FLQ-EL---CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGM--LTNLNHEAMSTLLGERVMD 220 (248)
T ss_pred -cchHHH---HHH-Hh---cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE--EcCCCHHHHHHHhhHHHHH
Confidence 111222 222 22 33559999999554 344577888888754433344444 4662 2344444556667
Q ss_pred ccCCC-CeeEEeCCCC
Q psy200 354 NVTLQ-PTLMNFAPYS 368 (490)
Q Consensus 354 R~~~~-~~~i~~~pls 368 (490)
|+... ...+.|..-+
T Consensus 221 Rl~~~~~~~v~~~g~s 236 (248)
T PRK12377 221 RMTMNGGRWVNFNWES 236 (248)
T ss_pred HHhhCCCeEEEeCCcC
Confidence 76432 2457776544
No 231
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.95 E-value=2.1e-09 Score=110.98 Aligned_cols=213 Identities=16% Similarity=0.186 Sum_probs=144.7
Q ss_pred ChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC
Q psy200 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP 277 (490)
Q Consensus 198 gre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~ 277 (490)
+.+..++.+...+.... ...-.++|.|++|+||-.+++++.+.-. ..-+++.+||..+.. .-+-++++..+.+.+
T Consensus 317 ~~d~s~a~l~rk~~rv~--~~~~pvll~GEtGtGKe~laraiH~~s~--~~gpfvAvNCaAip~-~liesELFGy~~Gaf 391 (606)
T COG3284 317 LLDPSRATLLRKAERVA--ATDLPVLLQGETGTGKEVLARAIHQNSE--AAGPFVAVNCAAIPE-ALIESELFGYVAGAF 391 (606)
T ss_pred ccCHHHHHHHHHHHHHh--hcCCCeEecCCcchhHHHHHHHHHhccc--ccCCeEEEEeccchH-HhhhHHHhccCcccc
Confidence 45556666666665532 3456899999999999999999988765 334889999998742 222344444555555
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC-------CCCcEEEEEecCCCChhH-----
Q psy200 278 GGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI-------PGSKLVLVGVANALDLTD----- 345 (490)
Q Consensus 278 ~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~-------~~~~vilI~~tn~~~~~~----- 345 (490)
.|...+.....+..+-. + .+|+|||..|.-.-|..|++.++...+ ....|-||++|+.. +..
T Consensus 392 Tga~~kG~~g~~~~A~g--G---tlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d-l~~lv~~g 465 (606)
T COG3284 392 TGARRKGYKGKLEQADG--G---TLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD-LAQLVEQG 465 (606)
T ss_pred ccchhccccccceecCC--C---ccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC-HHHHHHcC
Confidence 55444444444443322 2 899999999999889988888764321 34567888888732 222
Q ss_pred hhhHHhhhccCCCCeeEEeCCCCH-HHHHHHHHHHHhcc-CCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy200 346 RMLPRLQANVTLQPTLMNFAPYSR-EQILEIISQKLKQT-DKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTY 423 (490)
Q Consensus 346 ~l~~~l~~R~~~~~~~i~~~pls~-~e~~~il~~~l~~~-~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~ 423 (490)
++-+.++.|++. ..|.++|+.. .+...+|.+.+.++ .....++++++..+.. +.|.||+|++.++++.+..++.
T Consensus 466 ~fredLyyrL~~--~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~--~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 466 RFREDLYYRLNA--FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLA--YRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred CchHHHHHHhcC--eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHh--CCCCCcHHHHHHHHHHHHHcCC
Confidence 234667777653 4788888863 34444444444444 3346789999998876 8899999999999999987776
Q ss_pred hc
Q psy200 424 DN 425 (490)
Q Consensus 424 ~~ 425 (490)
..
T Consensus 542 ~g 543 (606)
T COG3284 542 GG 543 (606)
T ss_pred CC
Confidence 44
No 232
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.95 E-value=2.9e-09 Score=92.38 Aligned_cols=136 Identities=23% Similarity=0.323 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC
Q psy200 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK 276 (490)
Q Consensus 197 vgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~ 276 (490)
+|....++++.+.+... ......|+|+|++||||+++|++++.... ...-.++.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~--a~~~~pvli~GE~GtGK~~~A~~lh~~~~-~~~~~~~~~~~~~~~---------------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL--AKSSSPVLITGEPGTGKSLLARALHRYSG-RANGPFIVIDCASLP---------------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH--HCSSS-EEEECCTTSSHHHHHHCCHHTTT-TCCS-CCCCCHHCTC----------------
T ss_pred CCCCHHHHHHHHHHHHH--hCCCCcEEEEcCCCCCHHHHHHHHHhhcC-ccCCCeEEechhhCc----------------
Confidence 46667777888888764 35678999999999999999999977643 122244445555431
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhH--hhhHHhhhc
Q psy200 277 PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTD--RMLPRLQAN 354 (490)
Q Consensus 277 ~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~--~l~~~l~~R 354 (490)
.+.+..+ +.-.|+|+|++.|....|..|..++......+.++|+.+..+..++.+ .+.+.+..+
T Consensus 62 ---------~~~l~~a-----~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~ 127 (138)
T PF14532_consen 62 ---------AELLEQA-----KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYR 127 (138)
T ss_dssp ---------HHHHHHC-----TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHH
T ss_pred ---------HHHHHHc-----CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHH
Confidence 1222221 223899999999999999999888865434455666655555444332 356778877
Q ss_pred cCCCCeeEEeCCC
Q psy200 355 VTLQPTLMNFAPY 367 (490)
Q Consensus 355 ~~~~~~~i~~~pl 367 (490)
+.. ..|.++|+
T Consensus 128 l~~--~~i~lPpL 138 (138)
T PF14532_consen 128 LSQ--LEIHLPPL 138 (138)
T ss_dssp CST--CEEEE---
T ss_pred hCC--CEEeCCCC
Confidence 764 36777764
No 233
>PF13173 AAA_14: AAA domain
Probab=98.92 E-value=3.7e-09 Score=90.43 Aligned_cols=126 Identities=21% Similarity=0.319 Sum_probs=76.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
.+.++|+||+|+||||+++.+++.+. ..-.++++++......... ..+ +.+.+.+... .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~---------------~~~-~~~~~~~~~~--~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLA---------------DPD-LLEYFLELIK--PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHh---------------hhh-hHHHHHHhhc--cC
Confidence 46889999999999999999998874 3346788876654211000 000 2223333221 24
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHH
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQI 372 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~ 372 (490)
..+|||||||.+.. ....+..+.+.. .+.++++.|... ..+.......+..|.. .+.+.|++-.|.
T Consensus 62 ~~~i~iDEiq~~~~-~~~~lk~l~d~~--~~~~ii~tgS~~-~~l~~~~~~~l~gr~~----~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPD-WEDALKFLVDNG--PNIKIILTGSSS-SLLSKDIAESLAGRVI----EIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhcc-HHHHHHHHHHhc--cCceEEEEccch-HHHhhcccccCCCeEE----EEEECCCCHHHh
Confidence 67999999999863 445555555522 334555544432 1122233455666664 799999998774
No 234
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.9e-09 Score=107.93 Aligned_cols=229 Identities=15% Similarity=0.135 Sum_probs=120.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
.+++|++..+..+.-.. -.+++++++||||||||++++.+..-+..-..-..++++ .+..+..++
T Consensus 179 ~DV~GQ~~AKrAleiAA------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s---------~I~s~~g~~ 243 (490)
T COG0606 179 KDVKGQEQAKRALEIAA------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVS---------AIHSLAGDL 243 (490)
T ss_pred hhhcCcHHHHHHHHHHH------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHH---------HHhhhcccc
Confidence 78999999988776655 347899999999999999999886655210000111110 000111111
Q ss_pred ------------cCCCCCCcHHHHHHHHHHHHh---cCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------C
Q psy200 274 ------------KLKPGGKSERHQLGAILKYFD---TKHKSILLILDEIDALESRKQTILYTIFEWPSI----------P 328 (490)
Q Consensus 274 ------------~~~~~~~s~~~~~~~l~~~l~---~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~----------~ 328 (490)
..+.+..+...+..--....- ..-..-||||||+..+.....+.|..-++-... .
T Consensus 244 ~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~y 323 (490)
T COG0606 244 HEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTY 323 (490)
T ss_pred cccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEE
Confidence 011111121111110000000 001133999999999877555555544432211 2
Q ss_pred CCcEEEEEecC--------------------CCChhHhhhHHhhhccCCCCeeEEeCCCCHHHH-------------HH-
Q psy200 329 GSKLVLVGVAN--------------------ALDLTDRMLPRLQANVTLQPTLMNFAPYSREQI-------------LE- 374 (490)
Q Consensus 329 ~~~vilI~~tn--------------------~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~-------------~~- 374 (490)
..+|.+|+++| ...+..++...+.+|+++ .+.++.++..+. .+
T Consensus 324 pa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl---~vev~~~~~~e~~~~~~~~ess~~v~~r 400 (490)
T COG0606 324 PARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDL---MVEVPRLSAGELIRQVPTGESSAGVRER 400 (490)
T ss_pred eeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhh---eecccCCCHHHhhcCCCCCCCcHHHHHH
Confidence 45677887777 112445566788889886 566666653322 11
Q ss_pred HH------HHHHhccCCCCCCCHHHHHH-----------HHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCH
Q psy200 375 II------SQKLKQTDKFNMFNASALQL-----------LAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGL 437 (490)
Q Consensus 375 il------~~~l~~~~~~~~~~~~~i~~-----------i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~ 437 (490)
++ ..+..+.+....+....++. +-..+....=..|..-.+++-|..+|..++ ...|..
T Consensus 401 Va~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g-----~~~i~~ 475 (490)
T COG0606 401 VAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEG-----SEQIER 475 (490)
T ss_pred HHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccC-----cchhhH
Confidence 11 11111100122233333333 332222233345555567777778888888 678888
Q ss_pred HHHHHHHH
Q psy200 438 KEVLGVIS 445 (490)
Q Consensus 438 ~~v~~a~~ 445 (490)
.|+.+|++
T Consensus 476 ~hl~eAi~ 483 (490)
T COG0606 476 SHLAEAIS 483 (490)
T ss_pred HHHHHHHh
Confidence 88888885
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.90 E-value=2.2e-08 Score=99.07 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCc
Q psy200 202 QLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKS 281 (490)
Q Consensus 202 ~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s 281 (490)
.++....|+.... ....+++|+|++|+|||+|+.++++++.. .++.++|++. .+++..+...-. ..
T Consensus 168 ~~~~~~~f~~~f~--~~~~~Lll~G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~------~~l~~~l~~~~~-~~---- 233 (329)
T PRK06835 168 ILEKCKNFIENFD--KNNENLLFYGNTGTGKTFLSNCIAKELLD-RGKSVIYRTA------DELIEILREIRF-NN---- 233 (329)
T ss_pred HHHHHHHHHHHHh--ccCCcEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEEH------HHHHHHHHHHHh-cc----
Confidence 3344445665532 23488999999999999999999999853 3567888853 344444432110 10
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecC--CCChhHhhhHHhhhccCC
Q psy200 282 ERHQLGAILKYFDTKHKSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVAN--ALDLTDRMLPRLQANVTL 357 (490)
Q Consensus 282 ~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn--~~~~~~~l~~~l~~R~~~ 357 (490)
..+....+.. +.. .-+|||||++..... .++.|+.+++.....+..+|+ +|| ..++...+.+++.+|+..
T Consensus 234 ~~~~~~~~~~-l~~---~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIi--TSNl~~~el~~~~~eri~SRL~~ 307 (329)
T PRK06835 234 DKELEEVYDL-LIN---CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMII--STNLSLEELLKTYSERISSRLLG 307 (329)
T ss_pred chhHHHHHHH-hcc---CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEE--ECCCCHHHHHHHHhHHHHHHHHc
Confidence 0111111222 222 339999999776433 456788887654333444433 455 234445556777888765
Q ss_pred CCeeEEeCCCC
Q psy200 358 QPTLMNFAPYS 368 (490)
Q Consensus 358 ~~~~i~~~pls 368 (490)
....+.|..-+
T Consensus 308 ~~~~i~~~G~d 318 (329)
T PRK06835 308 NFTLLKFYGED 318 (329)
T ss_pred CCEEEEecCcC
Confidence 44567775433
No 236
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.90 E-value=2e-07 Score=93.07 Aligned_cols=178 Identities=15% Similarity=0.211 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc--CCceEEEEeccCCCCHHHH----HHHHHHHhc
Q psy200 201 VQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK--DAFKTIYINCNSVRNAASV----YETIVNELK 274 (490)
Q Consensus 201 ~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~--~~~~~~~v~~~~~~~~~~l----~~~i~~~l~ 274 (490)
.-.+.|.+.|... ....+..+.|+|+=|+|||++++.+.+++... ..+.+++++++......++ +..|...+.
T Consensus 3 ~~a~~la~~I~~~-~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 3 PYAKALAEIIKNP-DSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred HHHHHHHHHHhcc-CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 4455666666541 11467788899999999999999999999744 4578899999988764444 444444332
Q ss_pred CCC----------------------C-----CC----------------------------------------cHHHHHH
Q psy200 275 LKP----------------------G-----GK----------------------------------------SERHQLG 287 (490)
Q Consensus 275 ~~~----------------------~-----~~----------------------------------------s~~~~~~ 287 (490)
... . .. ...++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (325)
T PF07693_consen 82 KHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEELIS 161 (325)
T ss_pred HhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHHHHH
Confidence 100 0 00 0001222
Q ss_pred HHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhh-------------HHhhhc
Q psy200 288 AILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRML-------------PRLQAN 354 (490)
Q Consensus 288 ~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~-------------~~l~~R 354 (490)
.+.+.+...++++||||||+|++.......++..+.... ...++++|.+.+..-+...+. .-+..-
T Consensus 162 ~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~-~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKi 240 (325)
T PF07693_consen 162 KIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLL-DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKI 240 (325)
T ss_pred HHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhc-CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhh
Confidence 233333345779999999999997765444444443322 224566665555221111110 111112
Q ss_pred cCCCCeeEEeCCCCHHHHHHHHHHHHhcc
Q psy200 355 VTLQPTLMNFAPYSREQILEIISQKLKQT 383 (490)
Q Consensus 355 ~~~~~~~i~~~pls~~e~~~il~~~l~~~ 383 (490)
+. ..+.+++++..++..++...+...
T Consensus 241 iq---~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 241 IQ---VPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred cC---eEEEeCCCCHHHHHHHHHHHHHHh
Confidence 22 368999999999998888775544
No 237
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.89 E-value=7e-08 Score=102.29 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=138.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHH----HH-HH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGA----IL-KY 292 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~----l~-~~ 292 (490)
..++++|.|+.|+||+++++.+..-+.. ..+|+.+.. ..+...++.. ...+..... +. -.
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~--~~p~r~~p~--~~t~~~L~Gg-----------~Dl~~~l~~g~~~~~pGl 88 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA--GTPLRRLPP--GIADDRLLGG-----------LDLAATLRAGRPVAQRGL 88 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC--CCCcccCCC--CCcHHHccCC-----------chHHhHhhcCCcCCCCCc
Confidence 5689999999999999999999887642 223332221 1122222111 000000000 00 00
Q ss_pred HhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------CCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeE
Q psy200 293 FDTKHKSILLILDEIDALESRKQTILYTIFEWPSI----------PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLM 362 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~----------~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i 362 (490)
+.. -..-||||||+..+....++.|.+.++...+ ...+|++|++.|..++..++-+.+..||++ .+
T Consensus 89 la~-Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l---~v 164 (584)
T PRK13406 89 LAE-ADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAF---HL 164 (584)
T ss_pred eee-ccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEE---EE
Confidence 111 1123999999999999999999988775422 346889998755444556677889999996 78
Q ss_pred EeCCCCHHHHH-------HHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhccccCCcccc
Q psy200 363 NFAPYSREQIL-------EIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRKAIDITNHLIDLTYDNVKENGEVTG 434 (490)
Q Consensus 363 ~~~pls~~e~~-------~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ll~~a~~~a~~~~~~~~~~~~ 434 (490)
.+..++..+.. .++..+- .. ....++++.++.+++.+....- +.|..+.+++-|..+|..++ ...
T Consensus 165 ~v~~~~~~~~~~~~~~~~~I~~AR~-rl-~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~G-----r~~ 237 (584)
T PRK13406 165 DLDGLALRDAREIPIDADDIAAARA-RL-PAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAG-----RTA 237 (584)
T ss_pred EcCCCChHHhcccCCCHHHHHHHHH-HH-ccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcC-----CCC
Confidence 88887765432 2222221 11 2467899999998875554432 78999999999999999999 789
Q ss_pred cCHHHHHHHHHHhccCcc
Q psy200 435 IGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 435 It~~~v~~a~~~~~~~~~ 452 (490)
|+.+||..|+.-++..+.
T Consensus 238 V~~~dv~~Aa~lvL~hR~ 255 (584)
T PRK13406 238 VEEEDLALAARLVLAPRA 255 (584)
T ss_pred CCHHHHHHHHHHHHHhhc
Confidence 999999999998875544
No 238
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.87 E-value=2.4e-08 Score=94.50 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCC
Q psy200 201 VQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGK 280 (490)
Q Consensus 201 ~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~ 280 (490)
..+..+..++... .....+++|+|++|||||+|+.++++++.. .+..++++ +..+++..+-..+.. ...
T Consensus 83 ~al~~a~~~~~~~--~~~~~~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~i------t~~~l~~~l~~~~~~--~~~ 151 (244)
T PRK07952 83 NALSKARQYVEEF--DGNIASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLII------TVADIMSAMKDTFSN--SET 151 (244)
T ss_pred HHHHHHHHHHHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEE------EHHHHHHHHHHHHhh--ccc
Confidence 3555556666542 122458999999999999999999999863 24566666 345555555444321 112
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecCC--CChhHhhhHHhhhccC
Q psy200 281 SERHQLGAILKYFDTKHKSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVANA--LDLTDRMLPRLQANVT 356 (490)
Q Consensus 281 s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn~--~~~~~~l~~~l~~R~~ 356 (490)
+...+.+. +. +.-+|||||++..... ..+.|+.+++.-+.....+++ +||. .++...+..++.+|+.
T Consensus 152 ~~~~~l~~----l~---~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tii--tSNl~~~~l~~~~g~ri~sRl~ 222 (244)
T PRK07952 152 SEEQLLND----LS---NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM--LTNSNMEEMTKLLGERVMDRMR 222 (244)
T ss_pred cHHHHHHH----hc---cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE--eCCCCHHHHHHHhChHHHHHHH
Confidence 22222222 32 2449999999987644 245677787644333334444 4662 2444445566667763
Q ss_pred -CCCeeEEeCCCC
Q psy200 357 -LQPTLMNFAPYS 368 (490)
Q Consensus 357 -~~~~~i~~~pls 368 (490)
-+...+.|+--+
T Consensus 223 ~~~~~~i~f~~~s 235 (244)
T PRK07952 223 LGNSLWVIFNWDS 235 (244)
T ss_pred HCCceEEEeeCCc
Confidence 223466776433
No 239
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.86 E-value=1e-09 Score=99.76 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=67.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH-
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE- 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~- 272 (490)
.+++|++..+..|.-... .+++++|+||||+|||++|+.+..-+..-..-. .+....+.+..... ....
T Consensus 3 ~dI~GQe~aKrAL~iAAa------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e--~le~~~i~s~~~~~--~~~~~ 72 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEE--ALEVSKIYSVAGLG--PDEGL 72 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH------CC--EEEES-CCCTHHHHHHHHHHCS--CCEEC--CESS--S-TT---S-----EE
T ss_pred hhhcCcHHHHHHHHHHHc------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHH--HhhhccccccccCC--CCCce
Confidence 578999998877766653 257999999999999999999987663111000 01111111111100 0000
Q ss_pred -----hcCCCCCCcHHHHHHHHHH------HHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------CCCc
Q psy200 273 -----LKLKPGGKSERHQLGAILK------YFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI----------PGSK 331 (490)
Q Consensus 273 -----l~~~~~~~s~~~~~~~l~~------~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~----------~~~~ 331 (490)
+..+....+...+..--.. .+.. .-||||||+..+.....+.|++.++...+ ...+
T Consensus 73 ~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~ 149 (206)
T PF01078_consen 73 IRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPAR 149 (206)
T ss_dssp EE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--
T ss_pred ecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecc
Confidence 0001111222222111000 0111 23999999999988888888887754321 3567
Q ss_pred EEEEEecC
Q psy200 332 LVLVGVAN 339 (490)
Q Consensus 332 vilI~~tn 339 (490)
+++|+++|
T Consensus 150 f~lv~a~N 157 (206)
T PF01078_consen 150 FLLVAAMN 157 (206)
T ss_dssp EEEEEEE-
T ss_pred cEEEEEec
Confidence 89999988
No 240
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.86 E-value=1.7e-08 Score=86.70 Aligned_cols=118 Identities=23% Similarity=0.216 Sum_probs=65.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHhcCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL-KPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~-~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
...++|+||+|+|||++++.++..+.... ..++++++............ ...... .........+...+.. ... .
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALAL-ARK-L 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHH-HHh-c
Confidence 46899999999999999999999886222 25677776655322211110 000111 1111223333333332 222 2
Q ss_pred CeEEEEEecCccccccCHHHHHHh-----HhCCCCCCCcEEEEEecCC
Q psy200 298 KSILLILDEIDALESRKQTILYTI-----FEWPSIPGSKLVLVGVANA 340 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~~~~L~~l-----~~~~~~~~~~vilI~~tn~ 340 (490)
.+.+|||||++.+........... ..........+.+|+++|.
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 257999999999987754433221 0011123445677777773
No 241
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.3e-07 Score=90.46 Aligned_cols=168 Identities=14% Similarity=0.160 Sum_probs=109.0
Q ss_pred HHHHHhhhccC-CCCeEEEECCCCCcHHHHHHHHHHHhhhcC---------CceEEEEeccCCCCHHHHHHHHHHHhcCC
Q psy200 207 RQFLLGHVNNE-TSGSMYISGPPGTGKSASLNLLVSRAEIKD---------AFKTIYINCNSVRNAASVYETIVNELKLK 276 (490)
Q Consensus 207 ~~~L~~~~~~~-~~~~ill~GppGtGKTtla~~l~~~l~~~~---------~~~~~~v~~~~~~~~~~l~~~i~~~l~~~ 276 (490)
.+.|...+..+ -.+..+++|+.|.||+.++..+++.+-+.. ...+.+++..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~------------------- 65 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF------------------- 65 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC-------------------
Confidence 34444444444 445566999999999999999999873210 1112222200
Q ss_pred CCCCcHHHHHHHHHHHHhcC---CCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhh
Q psy200 277 PGGKSERHQLGAILKYFDTK---HKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQA 353 (490)
Q Consensus 277 ~~~~s~~~~~~~l~~~l~~~---~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~ 353 (490)
....+.+++++.....-... +...|+|||+++.+....++.|..+++. ++...++|.+++. ...+.+.+++
T Consensus 66 g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE---Pp~~t~~il~~~~---~~kll~TI~S 139 (299)
T PRK07132 66 DKDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE---PPKDTYFLLTTKN---INKVLPTIVS 139 (299)
T ss_pred CCcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC---CCCCeEEEEEeCC---hHhChHHHHh
Confidence 11134556665555442222 4677999999999988888888888774 3445555555542 4788899999
Q ss_pred ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 354 NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 354 R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
||. .+.|.+++.+++...|... .++++....++. ..|++..|+.++
T Consensus 140 Rc~----~~~f~~l~~~~l~~~l~~~--------~~~~~~a~~~a~----~~~~~~~a~~~~ 185 (299)
T PRK07132 140 RCQ----VFNVKEPDQQKILAKLLSK--------NKEKEYNWFYAY----IFSNFEQAEKYI 185 (299)
T ss_pred CeE----EEECCCCCHHHHHHHHHHc--------CCChhHHHHHHH----HcCCHHHHHHHH
Confidence 995 8999999999999888753 135555555543 566677776654
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.83 E-value=5.6e-08 Score=93.63 Aligned_cols=101 Identities=13% Similarity=0.285 Sum_probs=60.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
....++|+|++|+|||+|+.++++++....++.++|+.. .+++..+...+ ..+.+.+.. + .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~------~~l~~~l~~~~---------~~~~~~~~~-~---~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF------VEGFGDLKDDF---------DLLEAKLNR-M---K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH------HHHHHHHHHHH---------HHHHHHHHH-h---c
Confidence 467899999999999999999999986433577788853 33333332221 111122222 2 2
Q ss_pred CeEEEEEecCcc-c------cccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 298 KSILLILDEIDA-L------ESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 298 ~~~vI~IDEid~-l------~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
..-||||||++. + ....++.|+.+++.....+..+ |.++|
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~t--Iitsn 223 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPI--LISSE 223 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCE--EEECC
Confidence 345999999954 1 1223456777776543333444 33455
No 243
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=3.1e-07 Score=104.40 Aligned_cols=194 Identities=12% Similarity=0.205 Sum_probs=117.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC-CCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV-RNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~-~~~~~l~~~i~~~ 272 (490)
..++-|...++.|.. ....+.++|+||+|.||||++..+++.. + .++|+++... .++..|+..++..
T Consensus 14 ~~~~~R~rl~~~l~~-------~~~~~~~~v~apaG~GKTtl~~~~~~~~----~-~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 14 HNTVVRERLLAKLSG-------ANNYRLVLVTSPAGYGKTTLISQWAAGK----N-NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred cccCcchHHHHHHhc-------ccCCCeEEEECCCCCCHHHHHHHHHHhC----C-CeEEEecCcccCCHHHHHHHHHHH
Confidence 567777766655432 2356789999999999999999988653 2 5778877544 4667788888888
Q ss_pred hcCCCCC--------------CcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEe
Q psy200 273 LKLKPGG--------------KSERHQLGAILKYFDTKHKSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGV 337 (490)
Q Consensus 273 l~~~~~~--------------~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~ 337 (490)
|.....+ .....+...+...+...+.+++|||||+|.+.... .+.+..++... ...+.+|.+
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~lv~~ 158 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTLVVL 158 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEEEEE
Confidence 7421110 11222333333344444679999999999997554 33555555432 223333333
Q ss_pred cCC-CChhHhhhHHhhhccCCCCeeEEeC----CCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 338 ANA-LDLTDRMLPRLQANVTLQPTLMNFA----PYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 338 tn~-~~~~~~l~~~l~~R~~~~~~~i~~~----pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
+.. ..+ . ...++-+- ..+.+. +++.+|+..++...+.. .++++.++.|.+ .+++-+.++
T Consensus 159 sR~~~~~--~-~~~l~~~~----~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~----~t~Gwp~~l 222 (903)
T PRK04841 159 SRNLPPL--G-IANLRVRD----QLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCD----DVEGWATAL 222 (903)
T ss_pred eCCCCCC--c-hHhHHhcC----cceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHH----HhCChHHHH
Confidence 432 111 1 11222111 134444 99999999999876543 368888888886 666666666
Q ss_pred HHHHHH
Q psy200 413 DITNHL 418 (490)
Q Consensus 413 ~ll~~a 418 (490)
.++..+
T Consensus 223 ~l~~~~ 228 (903)
T PRK04841 223 QLIALS 228 (903)
T ss_pred HHHHHH
Confidence 654433
No 244
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.77 E-value=2.1e-07 Score=101.31 Aligned_cols=231 Identities=15% Similarity=0.154 Sum_probs=132.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc-----------------CCCCeEEEECCCCCcHHHHHHHHHHHhhhc---CCceEEE
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN-----------------ETSGSMYISGPPGTGKSASLNLLVSRAEIK---DAFKTIY 253 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~-----------------~~~~~ill~GppGtGKTtla~~l~~~l~~~---~~~~~~~ 253 (490)
..++|++..+..|.-.|-..... ....+|||+|+||||||.+|+++++..... .+-.+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 78999999888776655432210 112389999999999999999997743210 0012222
Q ss_pred EeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC------
Q psy200 254 INCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI------ 327 (490)
Q Consensus 254 v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~------ 327 (490)
++|... . .. .....|.- ..+ .-++.. ...-+++|||++.|....|..|..+|+-...
T Consensus 530 vgLTa~---------~-~~-~d~~tG~~---~le--~GaLvl-AdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 530 VGLTAS---------I-KF-NESDNGRA---MIQ--PGAVVL-ANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred ccccch---------h-hh-cccccCcc---ccc--CCcEEE-cCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCC
Confidence 222211 0 00 00000000 000 000110 0112999999999999889989888864321
Q ss_pred ----CCCcEEEEEecCCCCh----------hHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHh------------
Q psy200 328 ----PGSKLVLVGVANALDL----------TDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLK------------ 381 (490)
Q Consensus 328 ----~~~~vilI~~tn~~~~----------~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~------------ 381 (490)
.+.++.||+++|...- .-.+.+.+.+||.+ ..+.++.++.+.=..|-.+.+.
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL--If~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~ 670 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL--IYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGN 670 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE--EEEecCCCChHHHHHHHHHHHHhhcccccccccc
Confidence 2468899999995421 11234678889875 2445555554432222222111
Q ss_pred -------------------------------------cc--CCCCCCCHHHHHHHHHHHHHhh-----------------
Q psy200 382 -------------------------------------QT--DKFNMFNASALQLLAGKVAAVS----------------- 405 (490)
Q Consensus 382 -------------------------------------~~--~~~~~~~~~~i~~i~~~i~~~~----------------- 405 (490)
-. .....+++++.+.|.+.+....
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~ 750 (915)
T PTZ00111 671 DEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQE 750 (915)
T ss_pred cccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccc
Confidence 00 1235578888888766443221
Q ss_pred -----------C------CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 406 -----------G------DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 406 -----------G------d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
| .+|++-.+++.+-..|..+- ...|+.+|+..|+.-+.
T Consensus 751 ~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rL-----s~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 751 DDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRL-----STVVTPADALQAVQIVK 805 (915)
T ss_pred ccccccccccccCCcccccHHHHHHHHHHHHHHhhhcC-----cCcccHHHHHHHHHHHH
Confidence 1 26677677777777787777 67899999999887643
No 245
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=2e-07 Score=92.28 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=93.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh---cCC----C-----CCCcHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL---KLK----P-----GGKSERH 284 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l---~~~----~-----~~~s~~~ 284 (490)
.-++.++|+||+|+|||++|+.+++.+.....-. -...|..+.+...+...-.-++ ... . ...+.++
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~-~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAP-GHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 5567899999999999999999999875321100 0012222211111110000000 000 0 1134666
Q ss_pred HHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeE
Q psy200 285 QLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLM 362 (490)
Q Consensus 285 ~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i 362 (490)
+++........ .++..|+|||+++.|....++.|..+++... . ...+|.+++. ...+.+.+.+||. .+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-~--~~~~Ilvth~---~~~ll~ti~SRc~----~~ 167 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-P--QVVFLLVSHA---ADKVLPTIKSRCR----KM 167 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-C--CCEEEEEeCC---hHhChHHHHHHhh----hh
Confidence 66655443322 2456688899999999998898988887553 2 2434445542 4567788999996 79
Q ss_pred EeCCCCHHHHHHHHHH
Q psy200 363 NFAPYSREQILEIISQ 378 (490)
Q Consensus 363 ~~~pls~~e~~~il~~ 378 (490)
.|.+++.+++...|..
T Consensus 168 ~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 168 VLPAPSHEEALAYLRE 183 (325)
T ss_pred cCCCCCHHHHHHHHHh
Confidence 9999999999988865
No 246
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=3e-07 Score=88.97 Aligned_cols=185 Identities=12% Similarity=0.218 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh---cCCC
Q psy200 201 VQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL---KLKP 277 (490)
Q Consensus 201 ~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l---~~~~ 277 (490)
..++.+...+.. +.-++..+++|+ +||+++|..++..+-...... .-.|..+.+...+...-.-++ ....
T Consensus 9 ~~~~~L~~~~~~---~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~--~~~Cg~C~~C~~i~~~~HPD~~~i~p~~ 81 (290)
T PRK07276 9 KVFQRFQTILEQ---DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEG--VLPCGHCRSCRLIEQGEFSDVTVIEPQG 81 (290)
T ss_pred HHHHHHHHHHHc---CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHhcCCCCCeeeecCCC
Confidence 444445555442 345677889995 789999999999875332110 012333322222111000000 0011
Q ss_pred CCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhcc
Q psy200 278 GGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANV 355 (490)
Q Consensus 278 ~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~ 355 (490)
...+.+++++........ .++..|+|||++|.|.....+.|...++.+ ..+.++|.+++ -.+.+++.++|||
T Consensus 82 ~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP---p~~t~~iL~t~---~~~~lLpTI~SRc 155 (290)
T PRK07276 82 QVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEP---QSEIYIFLLTN---DENKVLPTIKSRT 155 (290)
T ss_pred CcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCC---CCCeEEEEEEC---ChhhCchHHHHcc
Confidence 123566676655544322 245679999999999998889898888744 34455555554 2677899999999
Q ss_pred CCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 356 TLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 356 ~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
. .+.|.+ +.+++.+++.. .+ ++.+..+.++ ...|++..|+.++
T Consensus 156 q----~i~f~~-~~~~~~~~L~~----~g----~~~~~a~~la----~~~~s~~~A~~l~ 198 (290)
T PRK07276 156 Q----IFHFPK-NEAYLIQLLEQ----KG----LLKTQAELLA----KLAQSTSEAEKLA 198 (290)
T ss_pred e----eeeCCC-cHHHHHHHHHH----cC----CChHHHHHHH----HHCCCHHHHHHHh
Confidence 6 899977 77777776653 21 3444344444 3567888887765
No 247
>KOG1051|consensus
Probab=98.76 E-value=1.3e-07 Score=102.72 Aligned_cols=136 Identities=14% Similarity=0.206 Sum_probs=98.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC----CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE----TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~----~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
+.++|+++.+..|.+.+..+-.+. +...+++.||.|+|||-||++++..+- ...-.++.++.+.+..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F-gse~~~IriDmse~~e-------- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF-GSEENFIRLDMSEFQE-------- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc-CCccceEEechhhhhh--------
Confidence 899999999999999998764322 355788999999999999999999883 3444678887665422
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecC
Q psy200 270 VNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVAN 339 (490)
Q Consensus 270 ~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn 339 (490)
...+.+...|.-..+....|.++++. ...+||+||||+.-...-+..|.++++.... .-.++|||+++|
T Consensus 633 vskligsp~gyvG~e~gg~Lteavrr-rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn 709 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGGQLTEAVKR-RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSN 709 (898)
T ss_pred hhhccCCCcccccchhHHHHHHHHhc-CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecc
Confidence 22333333333344455566777765 4578999999999888778888888875532 245778888877
No 248
>PTZ00202 tuzin; Provisional
Probab=98.75 E-value=4.1e-07 Score=90.88 Aligned_cols=169 Identities=16% Similarity=0.228 Sum_probs=103.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..|+||+.++..|...|... ....+..+.|+|++|+|||++++.+...+. +..+++|.. +..+++..|+.+|
T Consensus 262 ~~FVGReaEla~Lr~VL~~~-d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr---g~eElLr~LL~AL 333 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRL-DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR---GTEDTLRSVVKAL 333 (550)
T ss_pred cCCCCcHHHHHHHHHHHhcc-CCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC---CHHHHHHHHHHHc
Confidence 68999999999999999742 223456888999999999999999998764 444555544 6799999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHH----hcCCCeEEEEE--ecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhh
Q psy200 274 KLKPGGKSERHQLGAILKYF----DTKHKSILLIL--DEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRM 347 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l----~~~~~~~vI~I--DEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l 347 (490)
+.... ....++.++|.+++ ...++..|||| -|-..|..--.+.+. + -....-+.+++=..-....+..-.
T Consensus 334 GV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-l--a~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 334 GVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-L--ACDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred CCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-H--HccchhheeeeeehHhhcchhccc
Confidence 97433 33345555555544 33244444444 455554322112111 1 111222333332211111122222
Q ss_pred hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhc
Q psy200 348 LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQ 382 (490)
Q Consensus 348 ~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~ 382 (490)
+| |++ .+.+++++.++...+.++.+.-
T Consensus 410 lp----rld----f~~vp~fsr~qaf~y~~h~~da 436 (550)
T PTZ00202 410 LP----RLD----FYLVPNFSRSQAFAYTQHAIDA 436 (550)
T ss_pred Cc----cce----eEecCCCCHHHHHHHHhhccch
Confidence 33 343 6888999999999988876543
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.74 E-value=5.7e-08 Score=93.82 Aligned_cols=166 Identities=20% Similarity=0.321 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCC
Q psy200 200 EVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGG 279 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~ 279 (490)
-.+..+...++..++. ...+++|+||+|||||++++.+.+.+. ...+.+..++++...+...+...+-..+. ...+
T Consensus 16 T~dt~r~~~ll~~l~~--~~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~~~~~~~~s~~Tts~~~q~~ie~~l~-k~~~ 91 (272)
T PF12775_consen 16 TVDTVRYSYLLDLLLS--NGRPVLLVGPSGTGKTSLIQNFLSSLD-SDKYLVITINFSAQTTSNQLQKIIESKLE-KRRG 91 (272)
T ss_dssp -HHHHHHHHHHHHHHH--CTEEEEEESSTTSSHHHHHHHHHHCST-TCCEEEEEEES-TTHHHHHHHHCCCTTEC-ECTT
T ss_pred cHHHHHHHHHHHHHHH--cCCcEEEECCCCCchhHHHHhhhccCC-ccccceeEeeccCCCCHHHHHHHHhhcEE-cCCC
Confidence 3444455556655554 367999999999999999999887764 22344566777665433332211100000 0000
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC------HHHHHHhHhCC---CCCC------CcEEEEEecCCCChh
Q psy200 280 KSERHQLGAILKYFDTKHKSILLILDEIDALESRK------QTILYTIFEWP---SIPG------SKLVLVGVANALDLT 344 (490)
Q Consensus 280 ~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~------~~~L~~l~~~~---~~~~------~~vilI~~tn~~~~~ 344 (490)
.. +--..++.+|+||||+..-.... .+.|+++++.. .... ..+.+||+++...-.
T Consensus 92 ~~----------~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr 161 (272)
T PF12775_consen 92 RV----------YGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR 161 (272)
T ss_dssp EE----------EEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-
T ss_pred CC----------CCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC
Confidence 00 00013678999999998765331 36777777543 1111 245677777643222
Q ss_pred HhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc
Q psy200 345 DRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT 383 (490)
Q Consensus 345 ~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~ 383 (490)
..+.+++.+.|. .+.+..++.+.+..|+...+...
T Consensus 162 ~~is~R~~r~f~----i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 162 NPISPRFLRHFN----ILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp -SHHHHHHTTEE----EEE----TCCHHHHHHHHHHHHH
T ss_pred CCCChHHhhheE----EEEecCCChHHHHHHHHHHHhhh
Confidence 346678888775 89999999999999988887654
No 250
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=7.7e-07 Score=85.83 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=86.8
Q ss_pred HHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH----h---cCC
Q psy200 204 EGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE----L---KLK 276 (490)
Q Consensus 204 ~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~----l---~~~ 276 (490)
+.|...+. .+.-++..+++||.|+||+++|..+++.+-+...- -.| ..+... + ...
T Consensus 7 ~~L~~~i~---~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~----~~c----------~~~~~~~HPD~~~i~p~ 69 (290)
T PRK05917 7 EALIQRVR---DQKVPSAIILHGQDLSNLSARAYELASLILKETSP----EAA----------YKISQKIHPDIHEFSPQ 69 (290)
T ss_pred HHHHHHHH---cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc----cHH----------HHHhcCCCCCEEEEecC
Confidence 34444444 23456778899999999999999999987532100 000 000000 0 000
Q ss_pred CC--CCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhh
Q psy200 277 PG--GKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQ 352 (490)
Q Consensus 277 ~~--~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~ 352 (490)
.. ..+.+++++...+.... .+...|+|||++|.|....++.|..+++.+ ...+++|.+++ -.+.+++.++
T Consensus 70 ~~~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEP---p~~~~fiL~~~---~~~~ll~TI~ 143 (290)
T PRK05917 70 GKGRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDP---PQHGVIILTSA---KPQRLPPTIR 143 (290)
T ss_pred CCCCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcC---CCCeEEEEEeC---ChhhCcHHHH
Confidence 01 12455665544443322 255679999999999999999999988754 34555555554 2577889999
Q ss_pred hccCCCCeeEEeCCCC
Q psy200 353 ANVTLQPTLMNFAPYS 368 (490)
Q Consensus 353 ~R~~~~~~~i~~~pls 368 (490)
|||. .+.|.++.
T Consensus 144 SRcq----~~~~~~~~ 155 (290)
T PRK05917 144 SRSL----SIHIPMEE 155 (290)
T ss_pred hcce----EEEccchh
Confidence 9996 78998763
No 251
>PRK08181 transposase; Validated
Probab=98.73 E-value=9.5e-08 Score=91.79 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=58.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
...+++|+||+|+|||+|+.++++++.. .++.++|++ ..+++..+..... ...... .+.. + .
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~------~~~L~~~l~~a~~----~~~~~~---~l~~-l---~ 166 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIE-NGWRVLFTR------TTDLVQKLQVARR----ELQLES---AIAK-L---D 166 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH-cCCceeeee------HHHHHHHHHHHHh----CCcHHH---HHHH-H---h
Confidence 3567999999999999999999988742 356677774 3445554433211 112222 2222 2 2
Q ss_pred CeEEEEEecCccccccC--HHHHHHhHhCCC
Q psy200 298 KSILLILDEIDALESRK--QTILYTIFEWPS 326 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~--~~~L~~l~~~~~ 326 (490)
+.-+|||||++.+.... +..|+++++..+
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~ 197 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARY 197 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 34599999999886543 457888887443
No 252
>KOG0741|consensus
Probab=98.73 E-value=3e-07 Score=92.58 Aligned_cols=165 Identities=19% Similarity=0.300 Sum_probs=102.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHH----HHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERH----QLGAILKYF 293 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~----~~~~l~~~l 293 (490)
+-..++|.||||+|||+||-.++.. ++|+|+.+..+.. -.|.++.. +...|.++.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~-----------------miG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPED-----------------MIGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHH-----------------ccCccHHHHHHHHHHHHHHhh
Confidence 4457999999999999999888876 6799998854432 12233333 444555554
Q ss_pred hcCCCeEEEEEecCccccccC-------H---HHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEE
Q psy200 294 DTKHKSILLILDEIDALESRK-------Q---TILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMN 363 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l~~~~-------~---~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~ 363 (490)
+ ..-.+|+||+++.|.... . .+|.-++....-.+.+++++|+|.+.++...+. +..-|+ ..|.
T Consensus 596 k--S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~--i~~~F~---~~i~ 668 (744)
T KOG0741|consen 596 K--SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMG--ILDCFS---STIH 668 (744)
T ss_pred c--CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcC--HHHhhh---heee
Confidence 4 346799999999986542 1 223333333333456888888887555544432 223344 3788
Q ss_pred eCCCCH-HHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC--CHHHHHHHHHH
Q psy200 364 FAPYSR-EQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG--DIRKAIDITNH 417 (490)
Q Consensus 364 ~~pls~-~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G--d~r~ai~ll~~ 417 (490)
++.++. +++.+++... ..|.++.++.+++.....+- ++.+++.+++.
T Consensus 669 Vpnl~~~~~~~~vl~~~-------n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~ 718 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEEL-------NIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEM 718 (744)
T ss_pred cCccCchHHHHHHHHHc-------cCCCcchhHHHHHHHhccccchhHHHHHHHHHH
Confidence 888886 7777777652 34677777777774444332 24444444433
No 253
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.73 E-value=5.3e-07 Score=100.21 Aligned_cols=263 Identities=14% Similarity=0.197 Sum_probs=144.6
Q ss_pred CCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC---CHHH---HHHH
Q psy200 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR---NAAS---VYET 268 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~---~~~~---l~~~ 268 (490)
.++||+.+++.|...+.... .+....+++.|.+|+|||.+++.|.+.+.... -.++.-.|..+. .... .+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~-~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~-~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS-KGRGEVVLVAGESGIGKSALVNEVHKPITQQR-GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh-CCCeEEEEEeecCCCcHHHHHHHHHHHHhccc-eeeeHhhcccccCCCchHHHHHHHHH
Confidence 47999999999999998753 45667999999999999999999999886331 123333333221 1122 2333
Q ss_pred HHHHh-------------------cCC-------------CCC----------CcHHHHH----HHHHHHHhcCCCeEEE
Q psy200 269 IVNEL-------------------KLK-------------PGG----------KSERHQL----GAILKYFDTKHKSILL 302 (490)
Q Consensus 269 i~~~l-------------------~~~-------------~~~----------~s~~~~~----~~l~~~l~~~~~~~vI 302 (490)
+..++ +.. -.| ....... ..+...+....+|.||
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33332 100 000 0011111 1111223334679999
Q ss_pred EEecCccccccCHHHHHHhHhCCC--CCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHH
Q psy200 303 ILDEIDALESRKQTILYTIFEWPS--IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKL 380 (490)
Q Consensus 303 ~IDEid~l~~~~~~~L~~l~~~~~--~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l 380 (490)
|+||+|+.+....+.|..+++... ...-+-+++..+.. ..+..-.++. ...+.|.+.|++..+...++...+
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~----~~~~~~~~~~--~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLR----PTLGEILKSA--TNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCcc----chhhHHhhcC--CceeEEecCcCchhhHHHHHHHHh
Confidence 999999999888888877776432 00001111111111 1111112221 122589999999999999999998
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH-----HHhccccCCcccccCHHHHHHHHHHhccCccccc
Q psy200 381 KQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDL-----TYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLH 455 (490)
Q Consensus 381 ~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~-----a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~ 455 (490)
... .....+.++.+.+ .+.|++=.+.++++..... ....+.|+.....|..-....++-+..
T Consensus 233 ~~~---~~~~~p~~~~i~~---kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l------- 299 (849)
T COG3899 233 GCT---KLLPAPLLELIFE---KTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFL------- 299 (849)
T ss_pred CCc---ccccchHHHHHHH---HhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHH-------
Confidence 874 3345666777776 4556433333344333321 111222211111222222222222222
Q ss_pred cccccCCCChHhHHHHHHHHHHhc
Q psy200 456 CSKDEDSFPLQQKLALASLLLLKS 479 (490)
Q Consensus 456 ~~~~l~~L~~~qk~vL~al~~~~~ 479 (490)
..+++.||-..+.||.+.+....
T Consensus 300 -~~rl~kL~~~t~~Vl~~AA~iG~ 322 (849)
T COG3899 300 -AARLQKLPGTTREVLKAAACIGN 322 (849)
T ss_pred -HHHHhcCCHHHHHHHHHHHHhCc
Confidence 35678898888889887776653
No 254
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=2.7e-07 Score=87.07 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=108.9
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC---CCCCCcHHHHHHHHHHH
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL---KPGGKSERHQLGAILKY 292 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~---~~~~~s~~~~~~~l~~~ 292 (490)
...++.++++|+.|+||..+|.+++..+-..... -.|..+.+...+...-.-++.. .......+++++.....
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~----~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l 79 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKAN----GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKL 79 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCC----CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 3567889999999999999999999987533211 1244443332222111111110 11123456666555443
Q ss_pred Hhc---CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCC--
Q psy200 293 FDT---KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPY-- 367 (490)
Q Consensus 293 l~~---~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pl-- 367 (490)
... .++..|+|||++|.|.....+.|..+++. +..+.++|.+++ -.+++++.++|||. .+.|.++
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEE---Pp~~t~fiLit~---~~~~lLpTI~SRCq----~~~~~~~~~ 149 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEE---PPKNTYGIFTTR---NENNILNTILSRCV----QYVVLSKEK 149 (261)
T ss_pred ccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcC---CCCCeEEEEEEC---ChHhCchHhhhhee----eeecCChhh
Confidence 221 23467999999999998888888888774 445566666665 26788999999995 7888887
Q ss_pred --------CHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy200 368 --------SREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITN 416 (490)
Q Consensus 368 --------s~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~ 416 (490)
+..++.+.+..+.. +++ .+.. ...|+...++.++.
T Consensus 150 ~~~~~~~~~~~~i~~~L~~~~~-------~d~-~i~~------~a~g~~~~a~~l~~ 192 (261)
T PRK05818 150 KVPFKVESNDRYFQYILLSFYS-------VDE-QLQA------YNNGSFSKLKNIIE 192 (261)
T ss_pred hcccccccChHHHHHHHHHccC-------ccH-HHHH------HcCCCHHHHHHHHH
Confidence 55555555544321 233 2333 45799999988877
No 255
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.71 E-value=1.3e-08 Score=91.37 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=70.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
...+++.||+|+|||.+++++++.+.......++.+++..+....+....+...++.... . ..+-.. +
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~---------~-v~~~~~-g- 70 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPG---------Y-VGAEEG-G- 70 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTC---------H-HHHHHH-T-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccc---------e-eeccch-h-
Confidence 457899999999999999999999852233488999999886522211111000000000 0 111111 2
Q ss_pred eEEEEEecCccccc-----------cCHHHHHHhHhCCC--------CCCCcEEEEEecCCC
Q psy200 299 SILLILDEIDALES-----------RKQTILYTIFEWPS--------IPGSKLVLVGVANAL 341 (490)
Q Consensus 299 ~~vI~IDEid~l~~-----------~~~~~L~~l~~~~~--------~~~~~vilI~~tn~~ 341 (490)
||+|||||.... .-|+.|+.+++-.. ..-.+++||+++|..
T Consensus 71 --VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 71 --VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp --EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred --hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 999999999998 66888888875431 123578999999844
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.71 E-value=1e-07 Score=91.21 Aligned_cols=106 Identities=21% Similarity=0.359 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG 278 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~ 278 (490)
+.+.+..+..+.... ....+++|+|++|+|||+|+.++++++. ..++.+.++ +..+++.+|......
T Consensus 88 ~~~~l~~~~~~~~~~---~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~------~~~el~~~Lk~~~~~--- 154 (254)
T COG1484 88 DKKALEDLASLVEFF---ERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI------TAPDLLSKLKAAFDE--- 154 (254)
T ss_pred hHHHHHHHHHHHHHh---ccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE------EHHHHHHHHHHHHhc---
Confidence 455666666555432 2688999999999999999999999997 667788888 445566666555433
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc--CHHHHHHhHhC
Q psy200 279 GKSERHQLGAILKYFDTKHKSILLILDEIDALESR--KQTILYTIFEW 324 (490)
Q Consensus 279 ~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~--~~~~L~~l~~~ 324 (490)
+.... .|.+.+. +.-||||||+...... ..+.+++++..
T Consensus 155 ~~~~~----~l~~~l~---~~dlLIiDDlG~~~~~~~~~~~~~q~I~~ 195 (254)
T COG1484 155 GRLEE----KLLRELK---KVDLLIIDDIGYEPFSQEEADLLFQLISR 195 (254)
T ss_pred CchHH----HHHHHhh---cCCEEEEecccCccCCHHHHHHHHHHHHH
Confidence 12222 2222222 2349999999997554 35666666543
No 257
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.69 E-value=3.4e-09 Score=88.40 Aligned_cols=118 Identities=15% Similarity=0.185 Sum_probs=61.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-CCe
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK-HKS 299 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~-~~~ 299 (490)
++||.|+||+|||++++++++.++ ..+..|.|.....+.++...- +-....+. +. +..+ --.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~----~~f~RIq~tpdllPsDi~G~~---v~~~~~~~--------f~--~~~GPif~ 63 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG----LSFKRIQFTPDLLPSDILGFP---VYDQETGE--------FE--FRPGPIFT 63 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT------EEEEE--TT--HHHHHEEE---EEETTTTE--------EE--EEE-TT-S
T ss_pred CEeeECCCccHHHHHHHHHHHHcC----CceeEEEecCCCCcccceeee---eeccCCCe--------eE--eecChhhh
Confidence 589999999999999999999976 455667765544444443110 00000000 00 0000 001
Q ss_pred EEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCCh--hHhhhHHhhhcc
Q psy200 300 ILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDL--TDRMLPRLQANV 355 (490)
Q Consensus 300 ~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~--~~~l~~~l~~R~ 355 (490)
-|+++|||.+...+.|.+|++.++..+. -...++||++.|..+. ...+-+.+.+||
T Consensus 64 ~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 64 NILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp SEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 2999999999999999999998764322 2456888999896543 334455666776
No 258
>PRK06526 transposase; Provisional
Probab=98.65 E-value=1.2e-07 Score=90.50 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=55.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
...+++|+||+|+|||+|+.+++.++.. .++.++++ +..+++..+..... . . .....+.. + .
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~-~g~~v~f~------t~~~l~~~l~~~~~---~-~---~~~~~l~~-l---~ 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ-AGHRVLFA------TAAQWVARLAAAHH---A-G---RLQAELVK-L---G 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH-CCCchhhh------hHHHHHHHHHHHHh---c-C---cHHHHHHH-h---c
Confidence 3568999999999999999999988742 34455444 33445544433211 1 1 11122222 2 2
Q ss_pred CeEEEEEecCcccccc--CHHHHHHhHhCC
Q psy200 298 KSILLILDEIDALESR--KQTILYTIFEWP 325 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~--~~~~L~~l~~~~ 325 (490)
+.-+|||||++.+... .++.|+.+++..
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r 188 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSR 188 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHH
Confidence 3459999999987533 356788877643
No 259
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=98.64 E-value=7.1e-06 Score=82.94 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=60.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-------HHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-------AASVY 266 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-------~~~l~ 266 (490)
.--|||+.+++.+...|.. +..+....-+|.|.-|+|||++++.+.+.. ...+|-+.+++++.... ...+|
T Consensus 25 ~~~VGr~~e~~~l~~~l~~-v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A-~~~~fvvs~v~ls~e~~lh~~~g~~~~~Y 102 (416)
T PF10923_consen 25 HIAVGREREIEALDRDLDR-VADGGSSFKFIRGEYGSGKTFFLRLIRERA-LEKGFVVSEVDLSPERPLHGTGGQLEALY 102 (416)
T ss_pred ceeechHHHHHHHHHHHHH-HhCCCCeEEEEEeCCCCcHHHHHHHHHHHH-HHcCCEEEEEecCCCcccccccccHHHHH
Confidence 3469999999999999875 456777788899999999999999886654 45677777877766432 23467
Q ss_pred HHHHHHhc
Q psy200 267 ETIVNELK 274 (490)
Q Consensus 267 ~~i~~~l~ 274 (490)
++|+..|.
T Consensus 103 r~l~~nL~ 110 (416)
T PF10923_consen 103 RELMRNLS 110 (416)
T ss_pred HHHHHhcC
Confidence 77777664
No 260
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.61 E-value=2.7e-06 Score=84.17 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=45.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc--CCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN--ETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~--~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
++++|.++.++++.+++..+..+ ...+.++|+||||+||||+|++|++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999887652 24578899999999999999999999863
No 261
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.61 E-value=3.9e-07 Score=89.49 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC
Q psy200 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP 277 (490)
Q Consensus 198 gre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~ 277 (490)
++...+.....|+.........++++|+|++|+|||+|+.++++++. ..++.+.++.. ..++..+...+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~------~~l~~~lk~~~~~-- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHF------PEFIRELKNSISD-- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEH------HHHHHHHHHHHhc--
Confidence 45555666666776543333567999999999999999999999986 34566677743 3455555444421
Q ss_pred CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--H-HHHHHhHhCCCCCCCcEEEEEecC
Q psy200 278 GGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--Q-TILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 278 ~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--~-~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
.+.. +.+.. + .+.-||||||+..-.... . +.|..+++.-... +..+|.++|
T Consensus 206 --~~~~---~~l~~-l---~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~--~~~ti~TSN 259 (306)
T PRK08939 206 --GSVK---EKIDA-V---KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQE--ELPTFFTSN 259 (306)
T ss_pred --CcHH---HHHHH-h---cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHC--CCeEEEECC
Confidence 1222 22222 2 234599999998764332 2 3444454422112 233444566
No 262
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.57 E-value=1.1e-05 Score=86.27 Aligned_cols=244 Identities=17% Similarity=0.190 Sum_probs=145.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~ 272 (490)
...+-|...++ .|.. +...+.++|.-|.|.||||++-.++.... ++..+.|+++.+.. ++..|++.++..
T Consensus 19 ~~~v~R~rL~~----~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~--~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 19 DNYVVRPRLLD----RLRR---ANDYRLILISAPAGFGKTTLLAQWRELAA--DGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred ccccccHHHHH----HHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcC--cccceeEeecCCccCCHHHHHHHHHHH
Confidence 34455554443 3432 34678999999999999999999987433 55677888887764 678899999888
Q ss_pred hcC--CCCC------------CcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEe
Q psy200 273 LKL--KPGG------------KSERHQLGAILKYFDTKHKSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGV 337 (490)
Q Consensus 273 l~~--~~~~------------~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~ 337 (490)
++. +..+ .+...+++.+..-+....+|+.+||||.|.+.... ...+..+++. ...++.+|.+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~ 166 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVT 166 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEE
Confidence 863 2222 23344455555545556779999999999998765 4555556552 3456766666
Q ss_pred cCC-CCh-hHhhhHHhhhcc-CCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 338 ANA-LDL-TDRMLPRLQANV-TLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 338 tn~-~~~-~~~l~~~l~~R~-~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
|.. ..+ ..+ -+++.-+ .++ -.--.++.+|..++|..... ..++...++.+.+.+.+|.+.++.+.
T Consensus 167 SR~rP~l~la~--lRlr~~llEi~---~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~a-- 234 (894)
T COG2909 167 SRSRPQLGLAR--LRLRDELLEIG---SEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIA-- 234 (894)
T ss_pred eccCCCCcccc--eeehhhHHhcC---hHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHH--
Confidence 641 111 011 0111100 010 11124568899999987653 34788889999986666665555332
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLL 475 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~ 475 (490)
.+ .+++... +...-......+.+.++... +.+..||..-+.+|....
T Consensus 235 --La----~~~~~~~-~q~~~~LsG~~~~l~dYL~e-------eVld~Lp~~l~~FLl~~s 281 (894)
T COG2909 235 --LA----LRNNTSA-EQSLRGLSGAASHLSDYLVE-------EVLDRLPPELRDFLLQTS 281 (894)
T ss_pred --HH----ccCCCcH-HHHhhhccchHHHHHHHHHH-------HHHhcCCHHHHHHHHHHH
Confidence 22 2211000 00011122234556665533 447889888888886544
No 263
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.52 E-value=1.4e-06 Score=92.63 Aligned_cols=239 Identities=15% Similarity=0.165 Sum_probs=141.8
Q ss_pred CCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccC--------CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEE
Q psy200 181 EDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNE--------TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTI 252 (490)
Q Consensus 181 ~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~--------~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~ 252 (490)
.+.|......+. ..+.|++...+.|.-.|-...... ..-++||+|.||+|||.|++.+++-+. ..+
T Consensus 274 ~~i~~~l~~Sia-PsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP-----r~v 347 (682)
T COG1241 274 PDIYDILIKSIA-PSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP-----RGV 347 (682)
T ss_pred CcHHHHHHHHhc-ccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC-----ceE
Confidence 344554443333 789999998877766654433221 124899999999999999999987753 345
Q ss_pred EEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHH-HHH-HhcC----CCeEEEEEecCccccccCHHHHHHhHhCCC
Q psy200 253 YINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAI-LKY-FDTK----HKSILLILDEIDALESRKQTILYTIFEWPS 326 (490)
Q Consensus 253 ~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l-~~~-l~~~----~~~~vI~IDEid~l~~~~~~~L~~l~~~~~ 326 (490)
|.++..... .|.+..-..+.. .++ +..+ ...-|..|||+|.|......++...|+-..
T Consensus 348 ytsgkgss~----------------~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQt 411 (682)
T COG1241 348 YTSGKGSSA----------------AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQT 411 (682)
T ss_pred EEccccccc----------------cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcE
Confidence 554332210 000000000000 000 1110 012288999999999988888888776432
Q ss_pred C----------CCCcEEEEEecCCCC--------hhHh--hhHHhhhccCCCCeeEEeCCCCHHH---H-HHHHHHH---
Q psy200 327 I----------PGSKLVLVGVANALD--------LTDR--MLPRLQANVTLQPTLMNFAPYSREQ---I-LEIISQK--- 379 (490)
Q Consensus 327 ~----------~~~~vilI~~tn~~~--------~~~~--l~~~l~~R~~~~~~~i~~~pls~~e---~-~~il~~~--- 379 (490)
. -+.++-+++++|+.- +.++ +.+.|.+||.+ ..+..+.++.+. + ..++..+
T Consensus 412 IsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDL--ifvl~D~~d~~~D~~ia~hil~~h~~~ 489 (682)
T COG1241 412 ISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDL--IFVLKDDPDEEKDEEIAEHILDKHRGE 489 (682)
T ss_pred eeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCe--eEEecCCCCccchHHHHHHHHHHHhcc
Confidence 1 235566778888331 1222 34678999985 233334444321 1 1222222
Q ss_pred -------------------------Hhcc--CCCCCCCHHHHHHHHHHHHHhhCC-------------HHHHHHHHHHHH
Q psy200 380 -------------------------LKQT--DKFNMFNASALQLLAGKVAAVSGD-------------IRKAIDITNHLI 419 (490)
Q Consensus 380 -------------------------l~~~--~~~~~~~~~~i~~i~~~i~~~~Gd-------------~r~ai~ll~~a~ 419 (490)
+.-. .....+++++.+.|.+.......+ .|++-.+++.+-
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLae 569 (682)
T COG1241 490 EPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAE 569 (682)
T ss_pred ccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHH
Confidence 1111 123578899999888866544432 566777888888
Q ss_pred HHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 420 DLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 420 ~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
..|..+- ...|+.+|+..|+.-+.
T Consensus 570 A~Ak~rL-----S~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 570 AHAKMRL-----SDVVEEEDVDEAIRLVD 593 (682)
T ss_pred HHHhhhc-----cCCCCHHHHHHHHHHHH
Confidence 8888887 67999999999988764
No 264
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.52 E-value=8.2e-07 Score=83.40 Aligned_cols=232 Identities=20% Similarity=0.251 Sum_probs=132.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc--eEEEEeccCCCCHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF--KTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~--~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
..+.-|...++++.+.++... ...-..++|.||.|.||+.|++.|+..-....++ .|+.+||..... ...++.++.
T Consensus 184 sgiatrnp~fnrmieqierva-~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg-d~amsalfg 261 (531)
T COG4650 184 SGIATRNPHFNRMIEQIERVA-IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG-DTAMSALFG 261 (531)
T ss_pred hcccccChHHHHHHHHHHHHH-hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC-chHHHHHHh
Confidence 556666666666666665432 2345678999999999999999998654333333 789999998853 334556666
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCC--------CCCCCcEEEEEecCCCCh
Q psy200 272 ELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWP--------SIPGSKLVLVGVANALDL 343 (490)
Q Consensus 272 ~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~--------~~~~~~vilI~~tn~~~~ 343 (490)
.+.+.+.|.. +-.+-+..... + -++|+|||..|....|..|...++.. ..-.+.+-+|+-|.+ |+
T Consensus 262 hvkgaftga~--~~r~gllrsad--g--gmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvr-dl 334 (531)
T COG4650 262 HVKGAFTGAR--ESREGLLRSAD--G--GMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVR-DL 334 (531)
T ss_pred hhccccccch--hhhhhhhccCC--C--ceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHH-HH
Confidence 6665555432 22222222122 2 29999999999988888888766532 112344545543321 12
Q ss_pred hHh-----hhHHhhhccCCCCeeEEeCCCC----HHHHHHH----HHHHHhccCCCCCCCHHHHHHHHHHH----HHhhC
Q psy200 344 TDR-----MLPRLQANVTLQPTLMNFAPYS----REQILEI----ISQKLKQTDKFNMFNASALQLLAGKV----AAVSG 406 (490)
Q Consensus 344 ~~~-----l~~~l~~R~~~~~~~i~~~pls----~~e~~~i----l~~~l~~~~~~~~~~~~~i~~i~~~i----~~~~G 406 (490)
... +.+.+..|+. ...|.-+. .+++..- +..+....+....|.-++-....... +.|.|
T Consensus 335 rq~vaeg~fredl~arin----lwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~g 410 (531)
T COG4650 335 RQLVAEGKFREDLYARIN----LWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRG 410 (531)
T ss_pred HHHHhccchHHHHHHhhh----eeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcc
Confidence 221 1234445554 23333332 2222211 22233333445556666555443322 56889
Q ss_pred CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 407 DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 407 d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
|.|.+-..+.++..+|.. ..|+.+.|..-+..
T Consensus 411 nfrelsasvtrmatlad~--------grit~~~ve~ei~r 442 (531)
T COG4650 411 NFRELSASVTRMATLADS--------GRITLDVVEDEINR 442 (531)
T ss_pred cHHHHhHHHHHHHHHhcC--------CceeHHHHHHHHHH
Confidence 999988777776666653 34666666654443
No 265
>PHA00729 NTP-binding motif containing protein
Probab=98.49 E-value=2.2e-06 Score=79.48 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
.....++|+|+||+||||+|.++++.+. +.+..+. .....+. . +....-.+..++.+.+..++...
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~----~~l~~l~-----~~~~~~d----~-~~~~~fid~~~Ll~~L~~a~~~~ 80 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF----WKLNNLS-----TKDDAWQ----Y-VQNSYFFELPDALEKIQDAIDND 80 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH----hhccccc-----chhhHHh----c-CCcEEEEEHHHHHHHHHHHHhcC
Confidence 3446899999999999999999999864 0000000 0000000 0 00000123455555555544432
Q ss_pred CCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHH
Q psy200 297 HKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEII 376 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il 376 (490)
.+.-+|||||+.--.... . |... .. . ....+.+.+++|+. .+.|.+++++++.+.|
T Consensus 81 ~~~dlLIIDd~G~~~~~~---~-----wh~~---~~-----~----~yf~L~~aLrSR~~----l~il~~ls~edL~~~L 136 (226)
T PHA00729 81 YRIPLIIFDDAGIWLSKY---V-----WYED---YM-----K----TFYKIYALIRTRVS----AVIFTTPSPEDLAFYL 136 (226)
T ss_pred CCCCEEEEeCCchhhccc---c-----hhhh---cc-----c----hHHHHHHHHHhhCc----EEEEecCCHHHHHHHH
Confidence 233489999975422110 0 1100 00 1 12345566777775 7899999999999888
Q ss_pred HHH
Q psy200 377 SQK 379 (490)
Q Consensus 377 ~~~ 379 (490)
+.+
T Consensus 137 r~R 139 (226)
T PHA00729 137 REK 139 (226)
T ss_pred HhC
Confidence 764
No 266
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.48 E-value=9e-06 Score=81.49 Aligned_cols=170 Identities=13% Similarity=0.317 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHH-HHHHHHhhhcCCceEEEEeccCCC---CHHHHHHHHHHHhc
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASL-NLLVSRAEIKDAFKTIYINCNSVR---NAASVYETIVNELK 274 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla-~~l~~~l~~~~~~~~~~v~~~~~~---~~~~l~~~i~~~l~ 274 (490)
|.+.+++|..||.. .....|+|.||.|+||+.|+ ..+.+.- -.+++++|..+. +...++..+..++|
T Consensus 1 R~e~~~~L~~wL~e----~~~TFIvV~GPrGSGK~elV~d~~L~~r-----~~vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE----NPNTFIVVQGPRGSGKRELVMDHVLKDR-----KNVLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhc----CCCeEEEEECCCCCCccHHHHHHHHhCC-----CCEEEEEChHhhhccChHHHHHHHHHhcC
Confidence 45677888888864 56678999999999999999 6665542 248999998774 45667777777664
Q ss_pred C-----------------------CCCC--C-cHHHHHHHHH---HHHhc------------------------CCCeEE
Q psy200 275 L-----------------------KPGG--K-SERHQLGAIL---KYFDT------------------------KHKSIL 301 (490)
Q Consensus 275 ~-----------------------~~~~--~-s~~~~~~~l~---~~l~~------------------------~~~~~v 301 (490)
- ...| . ...++.+.|. .+++. ....-|
T Consensus 72 Y~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PV 151 (431)
T PF10443_consen 72 YFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPV 151 (431)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCE
Confidence 1 1111 1 1222222222 12211 012459
Q ss_pred EEEecCccccccCHHHHHH-hHhCC----CCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHH
Q psy200 302 LILDEIDALESRKQTILYT-IFEWP----SIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEII 376 (490)
Q Consensus 302 I~IDEid~l~~~~~~~L~~-l~~~~----~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il 376 (490)
||||.|.+-... .+.++. +.+|. ...-.+|||+ |+.......+...+-.|.- ..|.+...+++..+.++
T Consensus 152 VVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFl--T~dv~~~k~LskaLPn~vf---~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 152 VVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFL--TDDVSYSKPLSKALPNRVF---KTISLSDASPESAKQYV 225 (431)
T ss_pred EEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEE--CCCCchhhhHHHhCCCCce---eEEeecCCCHHHHHHHH
Confidence 999999887655 344443 55664 2233445554 5544455555555444321 47999999999999999
Q ss_pred HHHHhcc
Q psy200 377 SQKLKQT 383 (490)
Q Consensus 377 ~~~l~~~ 383 (490)
..+|...
T Consensus 226 ~~~L~~~ 232 (431)
T PF10443_consen 226 LSQLDED 232 (431)
T ss_pred HHHhccc
Confidence 9999764
No 267
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.48 E-value=3e-07 Score=83.18 Aligned_cols=101 Identities=20% Similarity=0.331 Sum_probs=57.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
.+.+++|+|++|+|||+||.++++++-. .++.+.|++ ..+++..+ ........... .+.. +..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~------~~~L~~~l----~~~~~~~~~~~---~~~~-l~~-- 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFIT------ASDLLDEL----KQSRSDGSYEE---LLKR-LKR-- 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEE------HHHHHHHH----HCCHCCTTHCH---HHHH-HHT--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEee------cCceeccc----cccccccchhh---hcCc-ccc--
Confidence 4678999999999999999999998753 566778884 34444444 32222222222 2332 322
Q ss_pred CeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 298 KSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
.-+|||||+...... ..+.|+.+++.-+. +.. .|.+||
T Consensus 109 -~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~-~~~--tIiTSN 148 (178)
T PF01695_consen 109 -VDLLILDDLGYEPLSEWEAELLFEIIDERYE-RKP--TIITSN 148 (178)
T ss_dssp -SSCEEEETCTSS---HHHHHCTHHHHHHHHH-T-E--EEEEES
T ss_pred -ccEecccccceeeecccccccchhhhhHhhc-ccC--eEeeCC
Confidence 339999999876432 34556666654332 223 334677
No 268
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.45 E-value=1.2e-05 Score=82.05 Aligned_cols=123 Identities=21% Similarity=0.322 Sum_probs=74.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeE
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSI 300 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~ 300 (490)
.++|+||.+|||||+++.+...+... +++++-.+..... ....+....+.+.... +..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d~~~~~----------------~~l~d~~~~~~~~~~~--~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDDLRLDR----------------IELLDLLRAYIELKER--EKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc----eEEEEecchhcch----------------hhHHHHHHHHHHhhcc--CCc
Confidence 89999999999999998887766411 5666533331100 1111222222222221 457
Q ss_pred EEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 301 LLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 301 vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
.|||||||.+.. .+..+..+.+.... .+++.|.+. .-+.....+.+..|. ..+.+.|++-.|...
T Consensus 97 yifLDEIq~v~~-W~~~lk~l~d~~~~---~v~itgsss-~ll~~~~~~~L~GR~----~~~~l~PlSF~Efl~ 161 (398)
T COG1373 97 YIFLDEIQNVPD-WERALKYLYDRGNL---DVLITGSSS-SLLSKEISESLAGRG----KDLELYPLSFREFLK 161 (398)
T ss_pred eEEEecccCchh-HHHHHHHHHccccc---eEEEECCch-hhhccchhhhcCCCc----eeEEECCCCHHHHHh
Confidence 999999999854 45566666654332 556655443 223344455666664 489999999988865
No 269
>PRK09183 transposase/IS protein; Provisional
Probab=98.42 E-value=1.9e-06 Score=82.88 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=59.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
.+.+++|+||+|+|||+|+.+++..+. ..++.+.++++. ++...+...... . .+...+...+ .
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~~~------~l~~~l~~a~~~----~---~~~~~~~~~~---~ 163 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTTAA------DLLLQLSTAQRQ----G---RYKTTLQRGV---M 163 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEeHH------HHHHHHHHHHHC----C---cHHHHHHHHh---c
Confidence 466899999999999999999987753 244566666432 333332211110 0 1112222222 3
Q ss_pred CeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 298 KSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
.+.+++|||++.+... ..+.|+.+++..+..+ . +|.++|
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s--~iiTsn 204 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-S--MILTSN 204 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcC-c--EEEecC
Confidence 3569999999986443 3346777776433232 3 344565
No 270
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.41 E-value=2.2e-06 Score=82.04 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc---C-CCCCCCHHHHHHHHHH
Q psy200 325 PSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT---D-KFNMFNASALQLLAGK 400 (490)
Q Consensus 325 ~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~---~-~~~~~~~~~i~~i~~~ 400 (490)
+....+.+++||+|+..- .-.+.+.|.+||. ++.|.+++.+++..++++-+... + ....+++++++.|++
T Consensus 2 p~vE~G~i~LIGATTENP-~f~vn~ALlSR~~----v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~- 75 (300)
T PRK14700 2 PYVESGKIILIGATTENP-TYYLNDALVSRLF----ILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN- 75 (300)
T ss_pred CCccCCcEEEEeecCCCc-cceecHhhhhhhh----eeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH-
Confidence 345678899999997543 2345789999996 89999999999999999988642 1 235799999999998
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHh
Q psy200 401 VAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 401 i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
...||.|.++|+|+.|+..+...+ ...||.+++.+++..-
T Consensus 76 --~a~GDaR~aLN~LE~a~~~~~~~~-----~~~it~~~~~~~~~~~ 115 (300)
T PRK14700 76 --YNEGDCRKILNLLERMFLISTRGD-----EIYLNKELFDQAVGET 115 (300)
T ss_pred --hcCCHHHHHHHHHHHHHhhccccC-----CCccCHHHHHHHHhHH
Confidence 888999999999999875432222 2259999999988653
No 271
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=98.39 E-value=6.4e-05 Score=74.18 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 198 gre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
.|+..+ +|.+.|...........++|+|++|+|||+++..+..... ..++-++++
T Consensus 3 vR~~t~-el~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~-~~~wiVl~v 57 (309)
T PF10236_consen 3 VRKPTL-ELINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHYAR-ENGWIVLYV 57 (309)
T ss_pred cchHHH-HHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHH-hCCEEEEEc
Confidence 344444 4555565555566788999999999999999888877653 234444444
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.39 E-value=3e-05 Score=79.61 Aligned_cols=243 Identities=12% Similarity=0.158 Sum_probs=120.6
Q ss_pred CCChHHHHHHHHHHHHhhhcc--------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-HHHHH
Q psy200 196 LPGREVQLEGIRQFLLGHVNN--------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-AASVY 266 (490)
Q Consensus 196 lvgre~~~~~l~~~L~~~~~~--------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-~~~l~ 266 (490)
+..++..++.|.+.|...+.. ..+..++|+|++|+||||++..++..+.. .++.+..++|...+. ..+.+
T Consensus 64 ~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~aa~eQL 142 (437)
T PRK00771 64 LTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRPAAYDQL 142 (437)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCHHHHHHH
Confidence 334455556666655554332 24678999999999999999999998863 346777777765543 34456
Q ss_pred HHHHHHhcCCCCCC-cHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHH---HHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 267 ETIVNELKLKPGGK-SERHQLGAILKYFDTKHKSILLILDEIDALESRKQTI---LYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 267 ~~i~~~l~~~~~~~-s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~---L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
..+...++.+..+. ...+....+.+++......-+||||....+... .+. |..+.... .....++++-++...+
T Consensus 143 ~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~d-~~lm~El~~l~~~~-~pdevlLVvda~~gq~ 220 (437)
T PRK00771 143 KQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHALE-EDLIEEMKEIKEAV-KPDEVLLVIDATIGQQ 220 (437)
T ss_pred HHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCcccch-HHHHHHHHHHHHHh-cccceeEEEeccccHH
Confidence 66777776543321 112222223333322112359999999876532 222 22222211 1222334443333222
Q ss_pred hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc---------CC----CCCCCHHHHHHHHHHHHHhhCCHH
Q psy200 343 LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT---------DK----FNMFNASALQLLAGKVAAVSGDIR 409 (490)
Q Consensus 343 ~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~---------~~----~~~~~~~~i~~i~~~i~~~~Gd~r 409 (490)
..+. ...+...+++ ..+-|..++.....-.+....... |. -..+++ +.++..+ -.-||+-
T Consensus 221 av~~-a~~F~~~l~i--~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~---~~~~~~i-lgmgd~~ 293 (437)
T PRK00771 221 AKNQ-AKAFHEAVGI--GGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDP---DRFISRL-LGMGDLE 293 (437)
T ss_pred HHHH-HHHHHhcCCC--CEEEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCH---HHHHHHH-hCCCChH
Confidence 2221 2233332322 356677776443222211111111 11 112333 3333322 2358888
Q ss_pred HHHHHHHHHHHHHHhcc-ccCCcccccCHHHHHHHHHHhc
Q psy200 410 KAIDITNHLIDLTYDNV-KENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~-~~~~~~~~It~~~v~~a~~~~~ 448 (490)
.++.-.+.++....... .+.......+++|+..-+..+.
T Consensus 294 ~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 294 SLLEKVEEALDEEEEEKDVEKMMKGKFTLKDMYKQLEAMN 333 (437)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 77765555533211100 0000134788999998877764
No 273
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.37 E-value=1.5e-06 Score=87.05 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=68.2
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC-CCCcHHHHHHHHHHHHhc
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP-GGKSERHQLGAILKYFDT 295 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~-~~~s~~~~~~~l~~~l~~ 295 (490)
..+++++|+|++|+|||+|+..+++.+....+.++ -...|+..+...|.... .......+ .+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~---------HFh~Fm~~vh~~l~~~~~~~~~l~~v----a~~l~- 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV---------HFHEFMLDVHSRLHQLRGQDDPLPQV----ADELA- 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccc---------cccHHHHHHHHHHHHHhCCCccHHHH----HHHHH-
Confidence 46899999999999999999999998753222111 23466666666654322 11222222 22232
Q ss_pred CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCC
Q psy200 296 KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANA 340 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~ 340 (490)
+...||.+||++--.-.+.-.|..+++... ...+++|+++|.
T Consensus 126 -~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~ 167 (362)
T PF03969_consen 126 -KESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNR 167 (362)
T ss_pred -hcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCC
Confidence 223499999999876655555666665432 346889999994
No 274
>KOG1051|consensus
Probab=98.37 E-value=3.6e-06 Score=91.71 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=102.8
Q ss_pred CCCCCh-HHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC------CceEEEEeccCCCCHHHHH
Q psy200 194 CELPGR-EVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD------AFKTIYINCNSVRNAASVY 266 (490)
Q Consensus 194 ~~lvgr-e~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~------~~~~~~v~~~~~~~~~~l~ 266 (490)
+.++|| ++++.++.+.|.. ...++-+|+|.+|+|||.++..+++.+.... ...++.++......
T Consensus 186 dPvigr~deeirRvi~iL~R----rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~a----- 256 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSR----KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVA----- 256 (898)
T ss_pred CCccCCchHHHHHHHHHHhc----cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhccc-----
Confidence 778898 9999999999964 4447788899999999999999999885221 12334443222100
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHH----HHHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 267 ETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQT----ILYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 267 ~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~----~L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
+..+.+.-...+... .+.....+..+||||||++++...... ....++.. ......+.+||+|+...
T Consensus 257 -------Ga~~rge~E~rlk~l-~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp-~L~rg~l~~IGatT~e~ 327 (898)
T KOG1051|consen 257 -------GAKRRGEFEERLKEL-LKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKP-LLARGGLWCIGATTLET 327 (898)
T ss_pred -------CcccchHHHHHHHHH-HHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHH-HHhcCCeEEEecccHHH
Confidence 112222222222222 222333567899999999999876422 11122211 12233499999987443
Q ss_pred hhHhh--hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhc
Q psy200 343 LTDRM--LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQ 382 (490)
Q Consensus 343 ~~~~l--~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~ 382 (490)
+...+ +|.+.+||. .+.+.-++.++...+|...-..
T Consensus 328 Y~k~iekdPalErrw~----l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 328 YRKCIEKDPALERRWQ----LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHhhCcchhhCcc----eeEeccCcccchhhhhhhhhhh
Confidence 43333 578999886 6778888877766665544333
No 275
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.35 E-value=1.6e-06 Score=82.40 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=59.1
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCce-EEEEeccC--CCCHHHHHHHHHHHhcCCCCCCcHH-------HH
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFK-TIYINCNS--VRNAASVYETIVNELKLKPGGKSER-------HQ 285 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~-~~~v~~~~--~~~~~~l~~~i~~~l~~~~~~~s~~-------~~ 285 (490)
-+.+..++|+|++|+||||+++.+++.+... .+. ++|+.... ..+..+++..+...+-....+.... .+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999987633 332 22333222 2477888888733322211111111 11
Q ss_pred HHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 286 LGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 286 ~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
...... +...++.++|||||++++...
T Consensus 92 ~~~a~~-~~~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 92 LEKAKR-LVEHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHHHHH-HHHCCCCEEEEEECHHHhhhh
Confidence 222222 223478999999999998644
No 276
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.33 E-value=1.9e-05 Score=68.12 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=24.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
...++|+|+||+||||++..+++.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 457899999999999999999998863
No 277
>PRK10536 hypothetical protein; Provisional
Probab=98.33 E-value=5e-06 Score=78.39 Aligned_cols=137 Identities=14% Similarity=0.192 Sum_probs=75.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-----------
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA----------- 262 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~----------- 262 (490)
..+.++......+..+|.. ...++++|++|||||+|+.+++.+.-....+..+++.-+.....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhc------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 3456666666666666643 35899999999999999999998643234566666654443211
Q ss_pred ---HHHHHHHHHHhcCCCCCCcHHHHHHHHH-----------HHHhc-CCCeEEEEEecCccccccCHHHHHHhHhCCCC
Q psy200 263 ---ASVYETIVNELKLKPGGKSERHQLGAIL-----------KYFDT-KHKSILLILDEIDALESRKQTILYTIFEWPSI 327 (490)
Q Consensus 263 ---~~l~~~i~~~l~~~~~~~s~~~~~~~l~-----------~~l~~-~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~ 327 (490)
..++.-+.+.|..-.. ...+...+. .++.+ .-...+|||||++++...... .++.- ..
T Consensus 129 eK~~p~~~pi~D~L~~~~~---~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k---~~ltR-~g 201 (262)
T PRK10536 129 EKFAPYFRPVYDVLVRRLG---ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMK---MFLTR-LG 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHhC---hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHH---HHHhh-cC
Confidence 1123333333322111 011111110 01111 012359999999999764322 22221 23
Q ss_pred CCCcEEEEEecCCCCh
Q psy200 328 PGSKLVLVGVANALDL 343 (490)
Q Consensus 328 ~~~~vilI~~tn~~~~ 343 (490)
.+++++++|-.+-.|+
T Consensus 202 ~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 202 ENVTVIVNGDITQCDL 217 (262)
T ss_pred CCCEEEEeCChhhccC
Confidence 6788899887654443
No 278
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=9.1e-06 Score=71.88 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=30.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
.++|+|++|+|||+++..++..+.. .+..++++++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcc
Confidence 3689999999999999999998753 3457788877654
No 279
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=1.2e-05 Score=81.20 Aligned_cols=149 Identities=11% Similarity=0.123 Sum_probs=80.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc---CCceEEEEeccCCCCH-HHHHHHHHHHhcCCCC-CCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK---DAFKTIYINCNSVRNA-ASVYETIVNELKLKPG-GKSERHQLGAILKY 292 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~---~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~~~-~~s~~~~~~~l~~~ 292 (490)
.++.++++||.|+||||++..++..+... .+..+..+++-.++.. ...+..+++.++.+.. .....++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 35789999999999999999999887532 2334444444444322 2335666666665422 2233444444433
Q ss_pred HhcCCCeEEEEEecCccccccCH--HHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHH
Q psy200 293 FDTKHKSILLILDEIDALESRKQ--TILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSRE 370 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~~~~~--~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~ 370 (490)
....-+||||++..+..... ..+..+++........++|+.++...+....+...+. .++...+-|..++..
T Consensus 252 ---~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~---~~~~~~~I~TKlDet 325 (388)
T PRK12723 252 ---SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS---PFSYKTVIFTKLDET 325 (388)
T ss_pred ---hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc---CCCCCEEEEEeccCC
Confidence 23456999999999864321 2333343322212134455554442211222222221 223356778888765
Q ss_pred HHH
Q psy200 371 QIL 373 (490)
Q Consensus 371 e~~ 373 (490)
...
T Consensus 326 ~~~ 328 (388)
T PRK12723 326 TCV 328 (388)
T ss_pred Ccc
Confidence 433
No 280
>KOG0480|consensus
Probab=98.27 E-value=4.7e-06 Score=85.93 Aligned_cols=232 Identities=17% Similarity=0.229 Sum_probs=130.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC--------CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE--------TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~--------~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
..+.|++..+.-|.-.|-..+... ..-+|+|+|.||+||+-++++++.-+. +-+|+++... +...+
T Consensus 345 PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP-----R~vYtsGkaS-SaAGL 418 (764)
T KOG0480|consen 345 PSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP-----RSVYTSGKAS-SAAGL 418 (764)
T ss_pred ccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC-----cceEecCccc-ccccc
Confidence 789999988877665554322211 234899999999999999999977553 4566654332 11111
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--C--------CCcEEEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--P--------GSKLVLV 335 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--~--------~~~vilI 335 (490)
.-.+ .....+.+-..+.=.-.+...| |=-|||||.|...+|.++...|+-..+ . +.+--+|
T Consensus 419 TaaV------vkD~esgdf~iEAGALmLADnG---ICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 419 TAAV------VKDEESGDFTIEAGALMLADNG---ICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred eEEE------EecCCCCceeeecCcEEEccCc---eEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhh
Confidence 0000 0000111101110000122222 777899999999888888888764422 1 2334466
Q ss_pred EecCCCC--------hhH--hhhHHhhhccCCCCeeEEeCCCC-----------------------------HHHHHHHH
Q psy200 336 GVANALD--------LTD--RMLPRLQANVTLQPTLMNFAPYS-----------------------------REQILEII 376 (490)
Q Consensus 336 ~~tn~~~--------~~~--~l~~~l~~R~~~~~~~i~~~pls-----------------------------~~e~~~il 376 (490)
+++|+.. +.+ ++...+.+||.+. .|-++..+ .+++..+|
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimSRFDL~--FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi 567 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMSRFDLF--FILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYI 567 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhhhhcEE--EEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHH
Confidence 7777331 111 2356778888752 34444444 44444443
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHHHhh-------------CCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHH
Q psy200 377 SQKLKQTDKFNMFNASALQLLAGKVAAVS-------------GDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGV 443 (490)
Q Consensus 377 ~~~l~~~~~~~~~~~~~i~~i~~~i~~~~-------------Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a 443 (490)
... + ...+.++.++-+.|.+++.... --.|++-.+++.+-.+|..+- ...|+.+|+.+|
T Consensus 568 ~yA-R--~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~-----~devt~~~v~ea 639 (764)
T KOG0480|consen 568 RYA-R--NFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVEC-----RDEVTKEDVEEA 639 (764)
T ss_pred HHH-H--hcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhh-----hhhccHHHHHHH
Confidence 321 1 2345667777777766552221 125666666666666666665 568999999999
Q ss_pred HHHhccC
Q psy200 444 ISSVYCT 450 (490)
Q Consensus 444 ~~~~~~~ 450 (490)
+.-+..+
T Consensus 640 ~eLlk~S 646 (764)
T KOG0480|consen 640 VELLKKS 646 (764)
T ss_pred HHHHHhh
Confidence 8866543
No 281
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.24 E-value=7.3e-05 Score=71.91 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=87.5
Q ss_pred CCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc
Q psy200 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK 274 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~ 274 (490)
++|--++.++.+....+- ...+.++++|.|.+|+||.++++..+.-. ++.++.+.....
T Consensus 9 ~lVlf~~ai~hi~ri~Rv--L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~----~~~~~~i~~~~~--------------- 67 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV--LSQPRGHALLVGVGGSGRQSLARLAAFIC----GYEVFQIEITKG--------------- 67 (268)
T ss_dssp -----HHHHHHHHHHHHH--HCSTTEEEEEECTTTSCHHHHHHHHHHHT----TEEEE-TTTSTT---------------
T ss_pred ceeeHHHHHHHHHHHHHH--HcCCCCCeEEecCCCccHHHHHHHHHHHh----ccceEEEEeeCC---------------
Confidence 466667777777766543 23567899999999999999999776653 366666654332
Q ss_pred CCCCCCcHHHHHHHHHHHHh---cCCCeEEEEEecCccccccCHH-----------------------------------
Q psy200 275 LKPGGKSERHQLGAILKYFD---TKHKSILLILDEIDALESRKQT----------------------------------- 316 (490)
Q Consensus 275 ~~~~~~s~~~~~~~l~~~l~---~~~~~~vI~IDEid~l~~~~~~----------------------------------- 316 (490)
.+..++.+.+..++. -.+++++++|+|-|-....-.+
T Consensus 68 -----y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~ 142 (268)
T PF12780_consen 68 -----YSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEG 142 (268)
T ss_dssp -----THHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT
T ss_pred -----cCHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcC
Confidence 223334333433332 1356677777766544322111
Q ss_pred ------HHHHhHhCCCCCCCcEEEEEecCCCChhH--hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc
Q psy200 317 ------ILYTIFEWPSIPGSKLVLVGVANALDLTD--RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT 383 (490)
Q Consensus 317 ------~L~~l~~~~~~~~~~vilI~~tn~~~~~~--~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~ 383 (490)
.++.+|-..-..+-+|+++..+....+.. +..|.+..+|. +..|.+++.+.+..+-...+...
T Consensus 143 ~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ct----IdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 143 ISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCT----IDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp --SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSE----EEEEES--HHHHHHHHHHHCCHH
T ss_pred CCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccE----EEeCCcCCHHHHHHHHHHHHHhh
Confidence 11111110011344556555444333333 34678888775 78999999999999888777654
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.24 E-value=1.3e-05 Score=73.83 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCC
Q psy200 201 VQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGK 280 (490)
Q Consensus 201 ~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~ 280 (490)
++.+.+..++. ...+.++|.|++|||||++++.+...+... ++.++.+. +. ......+...++... .
T Consensus 5 ~Q~~a~~~~l~-----~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g~~v~~~a-pT----~~Aa~~L~~~~~~~a--~ 71 (196)
T PF13604_consen 5 EQREAVRAILT-----SGDRVSVLQGPAGTGKTTLLKALAEALEAA-GKRVIGLA-PT----NKAAKELREKTGIEA--Q 71 (196)
T ss_dssp HHHHHHHHHHH-----CTCSEEEEEESTTSTHHHHHHHHHHHHHHT-T--EEEEE-SS----HHHHHHHHHHHTS-E--E
T ss_pred HHHHHHHHHHh-----cCCeEEEEEECCCCCHHHHHHHHHHHHHhC-CCeEEEEC-Cc----HHHHHHHHHhhCcch--h
Confidence 34445555553 445788899999999999999998877643 35555542 21 112222333322110 0
Q ss_pred cHHHHHHHHHHHHhc-------CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 281 SERHQLGAILKYFDT-------KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 281 s~~~~~~~l~~~l~~-------~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
+.. .++...... ..+..+|||||+..+... .+..++......+.+++++|-.+
T Consensus 72 Ti~---~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~---~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 72 TIH---SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSR---QLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp EHH---HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHH---HHHHHHHHS-T-T-EEEEEE-TT
T ss_pred hHH---HHHhcCCcccccccccCCcccEEEEecccccCHH---HHHHHHHHHHhcCCEEEEECCcc
Confidence 111 111100000 123459999999999754 34444444444577899998765
No 283
>KOG0478|consensus
Probab=98.24 E-value=1.4e-05 Score=83.26 Aligned_cols=160 Identities=15% Similarity=0.235 Sum_probs=87.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc--------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN--------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~--------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
..+.|+++.++.|.-.|-..-.. ...-+|||+|.||||||.+++.+++-+. +-+|.++-.- +...+
T Consensus 429 PsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p-----Rg~yTSGkGs-SavGL 502 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP-----RGVYTSGKGS-SAVGL 502 (804)
T ss_pred hhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC-----cceeecCCcc-chhcc
Confidence 67888887776655444321110 0125899999999999999999987653 2344433221 00000
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------CCCcEEEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI----------PGSKLVLV 335 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~----------~~~~vilI 335 (490)
. ........+.+-+.+. ....-..+. +=-|||||.|....+..|.+.|+-... -+.+.-|+
T Consensus 503 T------ayVtrd~dtkqlVLes-GALVLSD~G--iCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVL 573 (804)
T KOG0478|consen 503 T------AYVTKDPDTRQLVLES-GALVLSDNG--ICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVL 573 (804)
T ss_pred e------eeEEecCccceeeeec-CcEEEcCCc--eEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceee
Confidence 0 0000000000000000 000011122 566899999988888888888764321 24566678
Q ss_pred EecCCCC--------hhHhh--hHHhhhccCCCCeeEEeCCCCHH
Q psy200 336 GVANALD--------LTDRM--LPRLQANVTLQPTLMNFAPYSRE 370 (490)
Q Consensus 336 ~~tn~~~--------~~~~l--~~~l~~R~~~~~~~i~~~pls~~ 370 (490)
+++|..+ +.+.+ -+.|.+||++ ..+-|++.++.
T Consensus 574 AaANP~~skynp~k~i~eNI~LpptLLSRFDL--IylllD~~DE~ 616 (804)
T KOG0478|consen 574 AAANPIRSKYNPNKSIIENINLPPTLLSRFDL--IFLLLDKPDER 616 (804)
T ss_pred eeeccccccCCCCCchhhccCCChhhhhhhcE--EEEEecCcchh
Confidence 8888321 23333 3788999986 35666766654
No 284
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.23 E-value=1e-05 Score=80.43 Aligned_cols=98 Identities=12% Similarity=0.182 Sum_probs=65.2
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccC-CCCHHHHHHHHHHHhcCCCCCCcHHH------HHH
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNS-VRNAASVYETIVNELKLKPGGKSERH------QLG 287 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~-~~~~~~l~~~i~~~l~~~~~~~s~~~------~~~ 287 (490)
-+.+..++|+|++|+||||+++.+++.+... ++..++++-+.+ ..+..+|+..+...+........... ...
T Consensus 130 iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~ 209 (380)
T PRK12608 130 IGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVL 209 (380)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHH
Confidence 3677889999999999999999999988632 234333433332 34778899988887765432222111 122
Q ss_pred HHHHHHhcCCCeEEEEEecCcccccc
Q psy200 288 AILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 288 ~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
.+.+.+...++.+|||+||+..+...
T Consensus 210 ~~Ae~f~~~GkdVVLvlDsltr~A~A 235 (380)
T PRK12608 210 ERAKRLVEQGKDVVILLDSLTRLARA 235 (380)
T ss_pred HHHHHHHHcCCCEEEEEeCcHHHHHH
Confidence 33344445688999999999988643
No 285
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.16 E-value=9e-06 Score=81.35 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=60.7
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc-eEEEEeccCC--CCHHHHHHHHHHHhcCCCCCCcHHH-------H
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF-KTIYINCNSV--RNAASVYETIVNELKLKPGGKSERH-------Q 285 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~-~~~~v~~~~~--~~~~~l~~~i~~~l~~~~~~~s~~~-------~ 285 (490)
-+.+..++|+||+|+|||++++.+++.+... ++ ..+++..... .+..+++..+...+-....+..... +
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 3578899999999999999999999987633 22 1223333322 4777888888544432222222211 1
Q ss_pred HHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 286 LGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 286 ~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
.+.... +...|+.+||||||++++...
T Consensus 244 ~e~Ae~-~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 244 IEKAKR-LVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHHH-HHHcCCCeEEEEEChhHHHHH
Confidence 122222 234578999999999998654
No 286
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.16 E-value=3e-07 Score=91.59 Aligned_cols=233 Identities=17% Similarity=0.189 Sum_probs=114.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc--------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN--------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~--------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
..++|++..+..|.-.|-..... ...-++||+|.||+|||.|++.+++-. .+.+++++...... .+
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~-----pr~v~~~g~~~s~~-gL 97 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA-----PRSVYTSGKGSSAA-GL 97 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT------SSEEEEECCGSTCC-CC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC-----CceEEECCCCcccC-Cc
Confidence 77889887765554433322211 123489999999999999999885443 24456654443110 00
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------CCCcEEEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI----------PGSKLVLV 335 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~----------~~~~vilI 335 (490)
...+. ..+..+.-.-+. ..+. +..+| |++|||++.+.......|...|+-... -+.+.-|+
T Consensus 98 ta~~~---~d~~~~~~~lea-Galv--lad~G---iccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 98 TASVS---RDPVTGEWVLEA-GALV--LADGG---ICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp CEEEC---CCGGTSSECEEE--HHH--HCTTS---EEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred cceec---cccccceeEEeC-Cchh--cccCc---eeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 00000 000000000000 0111 22223 999999999998888889888875421 14566788
Q ss_pred EecCCCCh--------hH--hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc----------------------
Q psy200 336 GVANALDL--------TD--RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT---------------------- 383 (490)
Q Consensus 336 ~~tn~~~~--------~~--~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~---------------------- 383 (490)
+++|...- .+ .+.+.+.+||++ ..+-++..+.+.-..+..+.+...
T Consensus 169 aa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDL--if~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (331)
T PF00493_consen 169 AAANPKFGRYDPNKSLSENINLPPPLLSRFDL--IFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDL 246 (331)
T ss_dssp EEE--TT--S-TTS-CGCCT-S-CCCHCC-SE--EECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCC
T ss_pred HHHhhhhhhcchhhhhHHhcccchhhHhhcCE--EEEeccccccccccccceEEEeccccccccccccccccCCccCHHH
Confidence 88884421 11 234578889984 112245666443333333332221
Q ss_pred ----------CCCCCCCHHHHHHHHHHHHHhh-----------CCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHH
Q psy200 384 ----------DKFNMFNASALQLLAGKVAAVS-----------GDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLG 442 (490)
Q Consensus 384 ----------~~~~~~~~~~i~~i~~~i~~~~-----------Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~ 442 (490)
...+.+++++.+.|.+.+.... -.+|.+..+++.+-..|..+. ...|+.+|+..
T Consensus 247 lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~l-----r~~V~~~Dv~~ 321 (331)
T PF00493_consen 247 LRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRL-----RDEVTEEDVEE 321 (331)
T ss_dssp CHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTT-----SSECSHHHHHH
T ss_pred HHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhc-----cCceeHHHHHH
Confidence 1234466666666665331111 013333456777777777777 67899999999
Q ss_pred HHHHhc
Q psy200 443 VISSVY 448 (490)
Q Consensus 443 a~~~~~ 448 (490)
|+.-+.
T Consensus 322 Ai~L~~ 327 (331)
T PF00493_consen 322 AIRLFE 327 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886543
No 287
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.15 E-value=6.9e-06 Score=81.77 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=58.2
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceE-EEEeccCCC--CHHHHHHHHHHHhcCC-CCCCcHHHHH---HH
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKT-IYINCNSVR--NAASVYETIVNELKLK-PGGKSERHQL---GA 288 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~-~~v~~~~~~--~~~~l~~~i~~~l~~~-~~~~s~~~~~---~~ 288 (490)
-+.+.-.+|+||+|+|||||++.|++.+... ++.+ +|+...... ...+++..+...+-.. +.......+. ..
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 3578889999999999999999999988643 3322 233333333 4456666665332211 2211111111 11
Q ss_pred H--HHHHhcCCCeEEEEEecCcccccc
Q psy200 289 I--LKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 289 l--~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
+ .+.+...++.++|||||++++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHHHHH
Confidence 1 122234578999999999998754
No 288
>KOG0482|consensus
Probab=98.14 E-value=6.7e-05 Score=75.65 Aligned_cols=241 Identities=15% Similarity=0.190 Sum_probs=137.4
Q ss_pred CcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccC--------CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEE
Q psy200 182 DKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNE--------TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIY 253 (490)
Q Consensus 182 ~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~--------~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~ 253 (490)
+.|......+. .+++|+++.++.|.-.|-...... ..-+|+|.|.||+-|+-|++++.+-.. +-+|
T Consensus 331 d~yekLa~SiA-PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlap-----RgvY 404 (721)
T KOG0482|consen 331 DFYEKLAASIA-PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAP-----RGVY 404 (721)
T ss_pred cHHHHHHHhhc-hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCc-----ccce
Confidence 34544433333 889999999988888776543322 234789999999999999999966432 2233
Q ss_pred EeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH--HhcC----CCeEEEEEecCccccccCHHHHHHhHhCCCC
Q psy200 254 INCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKY--FDTK----HKSILLILDEIDALESRKQTILYTIFEWPSI 327 (490)
Q Consensus 254 v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~--l~~~----~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~ 327 (490)
..+-.- ...|.+..-+.+-+... ++++ ...-|-.|||||.|...+..++...++-..+
T Consensus 405 TTGrGS----------------SGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTI 468 (721)
T KOG0482|consen 405 TTGRGS----------------SGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTI 468 (721)
T ss_pred ecCCCC----------------CccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhh
Confidence 322111 01111111111111000 1110 0011667899999998887777776653321
Q ss_pred ----------CCCcEEEEEecCCC--------ChhHh--hhHHhhhccCCC---------------------------Ce
Q psy200 328 ----------PGSKLVLVGVANAL--------DLTDR--MLPRLQANVTLQ---------------------------PT 360 (490)
Q Consensus 328 ----------~~~~vilI~~tn~~--------~~~~~--l~~~l~~R~~~~---------------------------~~ 360 (490)
-+.+..+++++|.. ...+. +-.+|.+||.+- .-
T Consensus 469 SIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp 548 (721)
T KOG0482|consen 469 SIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQP 548 (721)
T ss_pred hhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCC
Confidence 24566677777722 11111 224666777531 01
Q ss_pred eEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHh-----------hCCHHHHHHHHHHHHHHHHhccccC
Q psy200 361 LMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAV-----------SGDIRKAIDITNHLIDLTYDNVKEN 429 (490)
Q Consensus 361 ~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~-----------~Gd~r~ai~ll~~a~~~a~~~~~~~ 429 (490)
...|.|++.+-++.+|.. ++.. ...++++.-+.|....... .-..|.++.+++.+..+|..+-
T Consensus 549 ~~~fepl~~~~mR~yI~~-ak~~--~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRl--- 622 (721)
T KOG0482|consen 549 PLDFEPLDPNLMRRYISL-AKRK--NPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRL--- 622 (721)
T ss_pred CccCCCCCHHHHHHHHHH-Hhhc--CCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhh---
Confidence 244555666555555543 2222 3445665555555433111 1247888889999988998887
Q ss_pred CcccccCHHHHHHHHHHhccCcc
Q psy200 430 GEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 430 ~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
...|..+||.+|+.-+.-+..
T Consensus 623 --s~~V~~~DV~EALRLme~sK~ 643 (721)
T KOG0482|consen 623 --SDSVEEDDVNEALRLMEMSKD 643 (721)
T ss_pred --ccccchhhHHHHHHHHHhhhc
Confidence 678999999999987654433
No 289
>PRK04296 thymidine kinase; Provisional
Probab=98.13 E-value=3.9e-06 Score=76.84 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=60.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCC---CcHHHHHHHHHHHHhc
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGG---KSERHQLGAILKYFDT 295 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~---~s~~~~~~~l~~~l~~ 295 (490)
+...+++|++|+||||++..++..+... +..++.+.. .+.+ ......+...++..... ....++...+.+ .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~-~~d~-~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~---~ 75 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKP-AIDD-RYGEGKVVSRIGLSREAIPVSSDTDIFELIEE---E 75 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEec-cccc-cccCCcEecCCCCcccceEeCChHHHHHHHHh---h
Confidence 3468899999999999999998887532 344454432 1111 11122344444432111 223444444443 2
Q ss_pred CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEec
Q psy200 296 KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
.++.-+|+|||++.+... .+..+++.....+..+++.+..
T Consensus 76 ~~~~dvviIDEaq~l~~~---~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKE---QVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CCCCCEEEEEccccCCHH---HHHHHHHHHHHcCCeEEEEecC
Confidence 345669999999987542 2333333322244556665544
No 290
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=98.12 E-value=8.1e-05 Score=70.88 Aligned_cols=209 Identities=18% Similarity=0.175 Sum_probs=121.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
.+|++-... .++..++... ...+....+||.+|.|||+.++.+++.-. ..+.+......+...++..++...
T Consensus 72 ~~~l~tkt~-r~~~~~~~~A--~k~g~l~~vyg~~g~gKt~a~~~y~~s~p-----~~~l~~~~p~~~a~~~i~~i~~~~ 143 (297)
T COG2842 72 PDFLETKTV-RRIFFRTRPA--SKTGSLVVVYGYAGLGKTQAAKNYAPSNP-----NALLIEADPSYTALVLILIICAAA 143 (297)
T ss_pred ccccccchh-HhHhhhhhhh--hhcCceEEEeccccchhHHHHHhhcccCc-----cceeecCChhhHHHHHHHHHHHHH
Confidence 344443322 2344444432 23455888999999999999998877532 334455555545556666666555
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCCh---hHhhhHH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDL---TDRMLPR 350 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~---~~~l~~~ 350 (490)
..... .........+...+. +...+|++||.++|.-...+.|..+.+ ..+..++++|....... ...-..+
T Consensus 144 ~~~~~-~~~~d~~~~~~~~l~--~~~~~iivDEA~~L~~~ale~lr~i~d---~~Gi~~vLvG~prL~~~l~~~~~~~~r 217 (297)
T COG2842 144 FGATD-GTINDLTERLMIRLR--DTVRLIIVDEADRLPYRALEELRRIHD---KTGIGVVLVGMPRLFKVLRRPEDELSR 217 (297)
T ss_pred hcccc-hhHHHHHHHHHHHHc--cCcceeeeehhhccChHHHHHHHHHHH---hhCceEEEecChHHHhccccchHHHHH
Confidence 44333 233334443333343 446699999999999877777776655 34566777776641111 1111233
Q ss_pred hhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhcc
Q psy200 351 LQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNV 426 (490)
Q Consensus 351 l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~ 426 (490)
+.+|...+ ..+...-.+.++.+.+....+.. +.++.+..+.. ...|+++.+-.++..+...+..++
T Consensus 218 l~srv~v~-~~~~~~~~d~d~~~~~~~~~l~~------~~~~~v~~~~~---~~~g~~~~L~~~l~~~~~~a~~~~ 283 (297)
T COG2842 218 LYSRVRVG-KLLGEKFPDADELAEIAALVLPT------EDELVLMQVIK---ETEGNIRRLDKILAGAVGTARSNG 283 (297)
T ss_pred HHHHhhhH-hhhhhhhhhhHHHHHHHHhhCcc------chHHHHHHHHH---hcchhHhHHHHHHhhhhhhhhhcc
Confidence 44443221 12222333346666666655432 34455544443 688999999999999988888877
No 291
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00012 Score=66.07 Aligned_cols=128 Identities=13% Similarity=0.245 Sum_probs=88.6
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCC-
Q psy200 280 KSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQ- 358 (490)
Q Consensus 280 ~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~- 358 (490)
...+++++.+..+.-...... ++||++|.|....+++|...++. +..++++|.+++ -...+++.+++||...
T Consensus 37 i~Vd~iReii~~~~~~~~~~k-~iI~~a~~l~~~A~NaLLK~LEE---Pp~~~~fiL~t~---~~~~llpTI~SRc~~~~ 109 (206)
T PRK08485 37 FKIEDAKEVIAEAYIAESEEK-IIVIAAPSYGIEAQNALLKILEE---PPKNICFIIVAK---SKNLLLPTIRSRLIIEK 109 (206)
T ss_pred CCHHHHHHHHHHHhhCCCCcE-EEEEchHhhCHHHHHHHHHHhcC---CCCCeEEEEEeC---ChHhCchHHHhhheecc
Confidence 456777776666543322222 45789999998888888888774 444565555554 2577889999999521
Q ss_pred --------CeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy200 359 --------PTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLID 420 (490)
Q Consensus 359 --------~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~ 420 (490)
...+.|.+++.+++.+++.+ +..+ .....+++.+.|+. ...|.+|.++.+.++++.
T Consensus 110 ~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke--~~~~~~ea~~lIa~---la~~s~r~~l~l~~q~l~ 173 (206)
T PRK08485 110 RKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKE--NKLSKEELKELIES---LLKECVKYKIPLNEEELE 173 (206)
T ss_pred ccccccccccccccCCCCHHHHHHHHHH-HHHc--ccccHHHHHHHHHH---HHHHHHHHHcCccHHHHH
Confidence 12488999999999999998 5554 34567888888887 566777877666555543
No 292
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00091 Score=62.23 Aligned_cols=174 Identities=10% Similarity=0.027 Sum_probs=112.2
Q ss_pred CCCCeEEEECCCC-CcHHHHHHHHHHHhhhc-----CCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q psy200 217 ETSGSMYISGPPG-TGKSASLNLLVSRAEIK-----DAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAIL 290 (490)
Q Consensus 217 ~~~~~ill~GppG-tGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~ 290 (490)
.-.+..++.|..+ .||..++..++..+... .+-.+..+.-... . .......+.+++++...
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~-~------------~~~~~~I~IdqIReL~~ 79 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETS-A------------TSNAKNISIEQIRKLQD 79 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEecccc-c------------cccCCcccHHHHHHHHH
Confidence 4567788999998 99999999888876421 1112222211000 0 00011235666666444
Q ss_pred HHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCC
Q psy200 291 KYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYS 368 (490)
Q Consensus 291 ~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls 368 (490)
..... .++..|++||++|.|.....+.|+.+++.+ ....++|..+. -..++++.+++||. .+.|..+.
T Consensus 80 ~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEP---P~~t~fILit~---~~~~LLpTIrSRCq----~i~~~~p~ 149 (263)
T PRK06581 80 FLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDA---PKNSYIFLITS---RAASIISTIRSRCF----KINVRSSI 149 (263)
T ss_pred HHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCC---CCCeEEEEEeC---ChhhCchhHhhceE----EEeCCCCC
Confidence 33322 356779999999999998888888888753 44555554443 25778999999995 89999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy200 369 REQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDL 421 (490)
Q Consensus 369 ~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~ 421 (490)
.....++....+.- ..+..-++.|.+ ....|...++...+.++.+
T Consensus 150 ~~~~~e~~~~~~~p-----~~~~~~l~~i~~---~~~~d~~~w~~~~~~~~~~ 194 (263)
T PRK06581 150 LHAYNELYSQFIQP-----IADNKTLDFINR---FTTKDRELWLDFIDNLLLL 194 (263)
T ss_pred HHHHHHHHHHhccc-----ccccHHHHHHHH---HhhhhHHHHHHHHHHHHHH
Confidence 98888887776543 345566788877 4556666666655555443
No 293
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.0001 Score=73.93 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=55.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCC-CHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVR-NAASVYETIVNELKLKPGG-KSERHQLGAILKYFD 294 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~~~~-~s~~~~~~~l~~~l~ 294 (490)
.++.++|+||+|+||||++..++..+... ....+..+.+..+. ...+.+..+...++.+... ....++...+.+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 46789999999999999999999876422 22345555544443 3344555555556553321 1222333333322
Q ss_pred cCCCeEEEEEecCccccc
Q psy200 295 TKHKSILLILDEIDALES 312 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~~ 312 (490)
.+.-+|+||.+.....
T Consensus 214 --~~~DlVLIDTaG~~~~ 229 (374)
T PRK14722 214 --RNKHMVLIDTIGMSQR 229 (374)
T ss_pred --cCCCEEEEcCCCCCcc
Confidence 2345899999987643
No 294
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=0.00026 Score=72.89 Aligned_cols=145 Identities=14% Similarity=0.191 Sum_probs=77.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh-hcCCceEEEEeccCCCCH-HHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHhc
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE-IKDAFKTIYINCNSVRNA-ASVYETIVNELKLKPG-GKSERHQLGAILKYFDT 295 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~-~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~~~-~~s~~~~~~~l~~~l~~ 295 (490)
++.++|+||+|+||||++..++..+. ...+..+..+++...... .+.+..+...++.+.. .....++...+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~--- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL--- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh---
Confidence 46889999999999999999988875 345567778877654321 2223344444444321 12344444444432
Q ss_pred CCCeEEEEEecCcccccc--CHHHHHHhHhCCCCCCCcEEEEEecC-CCChhHhhhHHhhhccCCCCeeEEeCCCCHHH
Q psy200 296 KHKSILLILDEIDALESR--KQTILYTIFEWPSIPGSKLVLVGVAN-ALDLTDRMLPRLQANVTLQPTLMNFAPYSREQ 371 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~~~~~vilI~~tn-~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e 371 (490)
...-+||||........ ..+.|..+++... ....+.++..++ .......+...+. .++ ...+-|..++...
T Consensus 298 -~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~-~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~--~~~vI~TKlDet~ 371 (424)
T PRK05703 298 -RDCDVILIDTAGRSQRDKRLIEELKALIEFSG-EPIDVYLVLSATTKYEDLKDIYKHFS-RLP--LDGLIFTKLDETS 371 (424)
T ss_pred -CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC-CCCeEEEEEECCCCHHHHHHHHHHhC-CCC--CCEEEEecccccc
Confidence 23459999998775433 1234555555211 223434443333 2112222222222 222 2356677776543
No 295
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.93 E-value=5.3e-05 Score=64.59 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
++++|+|++|+|||+++-.++..+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh
Confidence 36899999999999999999888763
No 296
>PRK14974 cell division protein FtsY; Provisional
Probab=97.92 E-value=0.00068 Score=67.34 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=58.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-HHHHHHHHHHHhcCCCC----CCcHHH-HHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-AASVYETIVNELKLKPG----GKSERH-QLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-~~~l~~~i~~~l~~~~~----~~s~~~-~~~~l~~ 291 (490)
.+..++|+|++|+||||++..++..+. ..++.++.+++..++. ....+..+...++.+.. +..... +.+.+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 356889999999999999999998875 3345666777665542 23456666777765321 222222 3344443
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
+... ..-+|+||....+..
T Consensus 218 ~~~~--~~DvVLIDTaGr~~~ 236 (336)
T PRK14974 218 AKAR--GIDVVLIDTAGRMHT 236 (336)
T ss_pred HHhC--CCCEEEEECCCccCC
Confidence 3322 234999999999864
No 297
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.91 E-value=0.00024 Score=66.70 Aligned_cols=147 Identities=19% Similarity=0.283 Sum_probs=76.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH-hcCCCCCCcHH----HHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE-LKLKPGGKSER----HQLGAILKYF 293 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~-l~~~~~~~s~~----~~~~~l~~~l 293 (490)
+-.++|.|++|+|||+++..+...+. ..+..+++-+.... ..+..-++.. +.........+ ...+.+.+..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~~~n--~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITPEYN--NEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEecCCc--hhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 44788999999999999999998875 45655665544322 2222222211 11111101111 1122233333
Q ss_pred hc-----CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCC
Q psy200 294 DT-----KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYS 368 (490)
Q Consensus 294 ~~-----~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls 368 (490)
.+ ...+++||+||+..-. .....+.+++.....-+..+++++-+- ..+.+.++.-+. ..+.| ..+
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~~-----~~lp~~iR~n~~---y~i~~-~~s 158 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQSY-----FHLPPNIRSNID---YFIIF-NNS 158 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeeec-----ccCCHHHhhcce---EEEEe-cCc
Confidence 21 1338899999986521 234556777764443444444443331 223344544333 23445 467
Q ss_pred HHHHHHHHHHH
Q psy200 369 REQILEIISQK 379 (490)
Q Consensus 369 ~~e~~~il~~~ 379 (490)
..++..+++..
T Consensus 159 ~~dl~~i~~~~ 169 (241)
T PF04665_consen 159 KRDLENIYRNM 169 (241)
T ss_pred HHHHHHHHHhc
Confidence 77776666654
No 298
>KOG2170|consensus
Probab=97.91 E-value=0.00077 Score=64.21 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=77.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC---CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE---TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIV 270 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~---~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~ 270 (490)
..+.|+--..+.+...+...+... ++-.+-++|.+||||..+++.|++.+-... ....++..+.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G-------------l~S~~V~~fv 148 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG-------------LRSPFVHHFV 148 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc-------------ccchhHHHhh
Confidence 567777666666666666555443 233455899999999999999999874111 0111222222
Q ss_pred HHhcCCCCCCcHHHHHHHHHHH----HhcCCCeEEEEEecCccccccCHHHHHHhHhCC----CCCCCcEEEEEecCC
Q psy200 271 NELKLKPGGKSERHQLGAILKY----FDTKHKSILLILDEIDALESRKQTILYTIFEWP----SIPGSKLVLVGVANA 340 (490)
Q Consensus 271 ~~l~~~~~~~s~~~~~~~l~~~----l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~----~~~~~~vilI~~tn~ 340 (490)
..+..+.. ...+...+.|... +.. .++.+.|+||+|.|...-.+.|.-+++.. .....+-|+|..+|.
T Consensus 149 at~hFP~~-~~ie~Yk~eL~~~v~~~v~~-C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 149 ATLHFPHA-SKIEDYKEELKNRVRGTVQA-CQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred hhccCCCh-HHHHHHHHHHHHHHHHHHHh-cCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 22222211 1233333333333 333 45679999999999887777777776632 123345677777773
No 299
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.90 E-value=0.00029 Score=64.67 Aligned_cols=144 Identities=16% Similarity=0.165 Sum_probs=81.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-HHHHHHHHHHHhcCCCC----CCcHHH-HHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-AASVYETIVNELKLKPG----GKSERH-QLGAILKY 292 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-~~~l~~~i~~~l~~~~~----~~s~~~-~~~~l~~~ 292 (490)
++.++|+||.|+||||++-.++..+... +..+..+++...+- ..+-+..+.+.++.+.. .....+ +.+.+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 3578999999999999999999998765 66777777666653 34557777888876421 122333 33444443
Q ss_pred HhcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecC-CCChhHhhhHHhhhccCCCCeeEEeCCCCH
Q psy200 293 FDTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVAN-ALDLTDRMLPRLQANVTLQPTLMNFAPYSR 369 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn-~~~~~~~l~~~l~~R~~~~~~~i~~~pls~ 369 (490)
.. .+.-+||||=........ ...|..+++.. ....++++..++ ..+.... ...+...+++ ..+-|..++.
T Consensus 80 ~~--~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~~~~~~~-~~~~~~~~~~--~~lIlTKlDe 152 (196)
T PF00448_consen 80 RK--KGYDLVLIDTAGRSPRDEELLEELKKLLEAL--NPDEVHLVLSATMGQEDLEQ-ALAFYEAFGI--DGLILTKLDE 152 (196)
T ss_dssp HH--TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH--SSSEEEEEEEGGGGGHHHHH-HHHHHHHSST--CEEEEESTTS
T ss_pred hh--cCCCEEEEecCCcchhhHHHHHHHHHHhhhc--CCccceEEEecccChHHHHH-HHHHhhcccC--ceEEEEeecC
Confidence 33 223499999987764332 23344444322 334555554444 2221221 2233333433 4677887775
Q ss_pred H
Q psy200 370 E 370 (490)
Q Consensus 370 ~ 370 (490)
.
T Consensus 153 t 153 (196)
T PF00448_consen 153 T 153 (196)
T ss_dssp S
T ss_pred C
Confidence 4
No 300
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00013 Score=72.22 Aligned_cols=91 Identities=23% Similarity=0.389 Sum_probs=57.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHhc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGG--KSERHQLGAILKYFDT 295 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~--~s~~~~~~~l~~~l~~ 295 (490)
++..+||-|.||+|||||+-.++..+.... +++|+..-+ +..++ .--.+.|+..... .-.+.-.+.+...+..
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 567899999999999999999999987333 889997654 33332 2223344432111 1111112222233333
Q ss_pred CCCeEEEEEecCccccccC
Q psy200 296 KHKSILLILDEIDALESRK 314 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~~ 314 (490)
.+|.++|||-||.+....
T Consensus 167 -~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 167 -EKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred -cCCCEEEEeccceeeccc
Confidence 568899999999997653
No 301
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.87 E-value=5.7e-05 Score=69.31 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=51.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCc-eEEEEeccCC--CC----HHH-------HHHHHHHHhcCCCCCCcHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAF-KTIYINCNSV--RN----AAS-------VYETIVNELKLKPGGKSERH 284 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~-~~~~v~~~~~--~~----~~~-------l~~~i~~~l~~~~~~~s~~~ 284 (490)
...+++.||+|||||+||-+.+-++-....+ +++++...-. .+ +.+ ++.-+.+.|..-......+.
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~ 98 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEE 98 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHH
Confidence 5689999999999999999998776545555 3444322110 00 011 22233333332211111222
Q ss_pred HHHHHHHH---------Hhc-CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 285 QLGAILKY---------FDT-KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 285 ~~~~l~~~---------l~~-~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
+. .+. +++ .=...+|||||+|++.... +..++.. -..+++++++|-..
T Consensus 99 ~~---~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~---~k~ilTR-~g~~skii~~GD~~ 156 (205)
T PF02562_consen 99 LI---QNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEE---LKMILTR-IGEGSKIIITGDPS 156 (205)
T ss_dssp HH---HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHH---HHHHHTT-B-TT-EEEEEE---
T ss_pred Hh---hcCeEEEEehhhhcCccccceEEEEecccCCCHHH---HHHHHcc-cCCCcEEEEecCce
Confidence 11 110 010 0125799999999997643 3333322 23678999988665
No 302
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.86 E-value=3e-05 Score=69.37 Aligned_cols=24 Identities=33% Similarity=0.823 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+++|+|+||+||||+++.+++.+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh
Confidence 489999999999999999999984
No 303
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.86 E-value=0.00019 Score=59.96 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC---CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE---TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~---~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..|+|+.-..+.|...|...+... ++-.+.++|++|||||.+++.|++.+-
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 789999988888888888777543 333455999999999999999999974
No 304
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.84 E-value=7.3e-05 Score=75.43 Aligned_cols=93 Identities=23% Similarity=0.278 Sum_probs=48.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh-hcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH---hc
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE-IKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYF---DT 295 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~-~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l---~~ 295 (490)
..++|.|.||||||.|+-.++..+. .......+++... ..-...+...+..................++...- ..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGN-HPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKE 80 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEec-chHHHHHHHHHhhhcccchhhhhhhhhHHHHhhccccccc
Confidence 3688999999999999999999981 1122233333221 11112222222222211111112222222332221 11
Q ss_pred CCCeEEEEEecCcccccc
Q psy200 296 KHKSILLILDEIDALESR 313 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~ 313 (490)
....-+|||||+|.|...
T Consensus 81 ~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred CCcCCEEEEehhHhhhhc
Confidence 234559999999999873
No 305
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.83 E-value=5.7e-05 Score=76.50 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=26.8
Q ss_pred ccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 215 NNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 215 ~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
....+..++|.|++|||||++++++.+.+.
T Consensus 18 ~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 18 ENEEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HccCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 346788999999999999999999999875
No 306
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.81 E-value=0.00032 Score=79.40 Aligned_cols=164 Identities=15% Similarity=0.225 Sum_probs=99.9
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
+-.++++|-|-||+|||+|+.++|+..+ -..+.+|.+...+.-+++.. ++-....|.-.-. -.-|..+++.+
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG----~kliRINLSeQTdL~DLfGs---d~Pve~~Gef~w~-dapfL~amr~G 1612 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTG----KKLIRINLSEQTDLCDLFGS---DLPVEEGGEFRWM-DAPFLHAMRDG 1612 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhc----CceEEeeccccchHHHHhCC---CCCcccCceeEec-ccHHHHHhhcC
Confidence 4578999999999999999999999865 56788988876554444321 1111111111101 11233344443
Q ss_pred CCeEEEEEecCccccccCHHHHHHhHhCC-----------CCCCCcEEEEEecCCCCh---hHhhhHHhhhccCCCCeeE
Q psy200 297 HKSILLILDEIDALESRKQTILYTIFEWP-----------SIPGSKLVLVGVANALDL---TDRMLPRLQANVTLQPTLM 362 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~~~~~L~~l~~~~-----------~~~~~~vilI~~tn~~~~---~~~l~~~l~~R~~~~~~~i 362 (490)
+ -+++||+.-....-.+.|...++.- ...+.++.|.++-|+.+- ..-+-..+..||. ++
T Consensus 1613 ~---WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs----vV 1685 (4600)
T COG5271 1613 G---WVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS----VV 1685 (4600)
T ss_pred C---EEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh----eE
Confidence 3 7889999876655445554444321 123567778777774321 1112345677886 89
Q ss_pred EeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Q psy200 363 NFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKV 401 (490)
Q Consensus 363 ~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i 401 (490)
.++.++.+++..|..+.... +.++.+..|.+.+
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp~------v~~d~~~kiik~m 1718 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYPQ------VNEDWRLKIIKFM 1718 (4600)
T ss_pred EecccccchHHHHHHhhCCc------cChHHHHHHHHHH
Confidence 99999999999998876443 4555554444433
No 307
>PRK10867 signal recognition particle protein; Provisional
Probab=97.81 E-value=0.003 Score=64.90 Aligned_cols=221 Identities=15% Similarity=0.149 Sum_probs=110.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHHHHhcCCC----CCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIVNELKLKP----GGKSERHQLGAILKY 292 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~~----~~~s~~~~~~~l~~~ 292 (490)
.+..++++|++|+||||++..++..+....+..+..++|-..+.. .+-+..+...++.+. .+.+...+.....+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 356889999999999999999998876443567778887766543 334555666665432 223344444322222
Q ss_pred HhcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecC-CCChhHhhhHHhhhccCCCCeeEEeCCCCH
Q psy200 293 FDTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVAN-ALDLTDRMLPRLQANVTLQPTLMNFAPYSR 369 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn-~~~~~~~l~~~l~~R~~~~~~~i~~~pls~ 369 (490)
... ...-+||||=...+.... ...|..+.+.. ....++++..+. ..+..+ ....+..++++ ..+-+..++.
T Consensus 179 a~~-~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v--~p~evllVlda~~gq~av~-~a~~F~~~~~i--~giIlTKlD~ 252 (433)
T PRK10867 179 AKE-NGYDVVIVDTAGRLHIDEELMDELKAIKAAV--NPDEILLVVDAMTGQDAVN-TAKAFNEALGL--TGVILTKLDG 252 (433)
T ss_pred HHh-cCCCEEEEeCCCCcccCHHHHHHHHHHHHhh--CCCeEEEEEecccHHHHHH-HHHHHHhhCCC--CEEEEeCccC
Confidence 221 234599999998875321 12233333322 222344443332 111111 12333333333 3566777764
Q ss_pred HHHHHHHHHHHhcc---------CC----CCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhcc-ccCCccccc
Q psy200 370 EQILEIISQKLKQT---------DK----FNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNV-KENGEVTGI 435 (490)
Q Consensus 370 ~e~~~il~~~l~~~---------~~----~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~-~~~~~~~~I 435 (490)
+...-.+....... +. -..|++ +.+++.+. .-||+-.++.-.+.++....... .+.......
T Consensus 253 ~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p---~~~~~~il-gmgD~~~l~e~~~~~~~~~~~~~~~~~~~~g~f 328 (433)
T PRK10867 253 DARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHP---DRMASRIL-GMGDVLSLIEKAQEVVDEEKAEKLAKKLKKGKF 328 (433)
T ss_pred cccccHHHHHHHHHCcCEEEEeCCCccccCccCCH---HHHHHHHh-CCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCC
Confidence 33222221111111 11 122333 33333222 46888777765555433211100 000002468
Q ss_pred CHHHHHHHHHHhc
Q psy200 436 GLKEVLGVISSVY 448 (490)
Q Consensus 436 t~~~v~~a~~~~~ 448 (490)
+++|+..-+..+.
T Consensus 329 ~l~d~~~q~~~~~ 341 (433)
T PRK10867 329 DLEDFLEQLQQMK 341 (433)
T ss_pred CHHHHHHHHHHHH
Confidence 8999988887764
No 308
>PRK13695 putative NTPase; Provisional
Probab=97.81 E-value=0.00015 Score=65.47 Aligned_cols=75 Identities=13% Similarity=0.260 Sum_probs=44.0
Q ss_pred CeEEEEEecCccccccC---HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 298 KSILLILDEIDALESRK---QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~---~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
++-+|+|||++.+.... .+.+..+++ .+. .+|++.+.. ....+..++..+.+. ..+.+.+-+.+++..
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~----~~~--~~i~v~h~~-~~~~~~~~i~~~~~~--~i~~~~~~~r~~~~~ 166 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLD----SEK--PVIATLHRR-SVHPFVQEIKSRPGG--RVYELTPENRDSLPF 166 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHh----CCC--eEEEEECch-hhHHHHHHHhccCCc--EEEEEcchhhhhHHH
Confidence 46689999987764433 233333332 233 333345432 233445566666554 578899989888887
Q ss_pred HHHHHHh
Q psy200 375 IISQKLK 381 (490)
Q Consensus 375 il~~~l~ 381 (490)
.+..+++
T Consensus 167 ~~~~~~~ 173 (174)
T PRK13695 167 EILNRLK 173 (174)
T ss_pred HHHHHHh
Confidence 7766543
No 309
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.80 E-value=0.0053 Score=63.06 Aligned_cols=219 Identities=16% Similarity=0.165 Sum_probs=108.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHHHHhcCCCC----CCcHHHHH-HHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIVNELKLKPG----GKSERHQL-GAILKY 292 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~~~----~~s~~~~~-~~l~~~ 292 (490)
+..++++|++|+||||++..++..+....+..+..++|-..+.. .+-+..+...++.+.. +....++. +.+..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998875334567888888776543 3335555565554322 12333332 233332
Q ss_pred HhcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEe-cCCCChhHhhhHHhhhccCCCCeeEEeCCCCH
Q psy200 293 FDTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGV-ANALDLTDRMLPRLQANVTLQPTLMNFAPYSR 369 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~-tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~ 369 (490)
.. ...-+||||=...+.... ...+..+.+.. ....+++|.- +...+... ....+..++++ .-+-+..++.
T Consensus 179 ~~--~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~--~p~e~lLVvda~tgq~~~~-~a~~f~~~v~i--~giIlTKlD~ 251 (428)
T TIGR00959 179 KE--NGFDVVIVDTAGRLQIDEELMEELAAIKEIL--NPDEILLVVDAMTGQDAVN-TAKTFNERLGL--TGVVLTKLDG 251 (428)
T ss_pred Hh--cCCCEEEEeCCCccccCHHHHHHHHHHHHhh--CCceEEEEEeccchHHHHH-HHHHHHhhCCC--CEEEEeCccC
Confidence 22 234599999998875321 12222222221 1223344333 22111111 12333334443 3566777764
Q ss_pred HHHHHHHHHHHhcc---------CC----CCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhcc-ccCCccccc
Q psy200 370 EQILEIISQKLKQT---------DK----FNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNV-KENGEVTGI 435 (490)
Q Consensus 370 ~e~~~il~~~l~~~---------~~----~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~-~~~~~~~~I 435 (490)
+...-.+....... +. -..+++ +.++..+. .-||+-.++.-.+.++....... .+.......
T Consensus 252 ~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p---~~~~~~iL-g~gD~~~l~e~~~~~~~~~~~~~~~~~~~~~~f 327 (428)
T TIGR00959 252 DARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHP---ERMASRIL-GMGDILSLVEKAQEVVDEEEAKKLAEKMKKGQF 327 (428)
T ss_pred cccccHHHHHHHHHCcCEEEEeCCCChhhCccCCH---HHHHHHHh-CCCChHHHHHHHHHhhCHHHHHHHHHHHHhCCC
Confidence 33222222221111 11 112333 23333222 46788777765555443211100 000002468
Q ss_pred CHHHHHHHHHHhc
Q psy200 436 GLKEVLGVISSVY 448 (490)
Q Consensus 436 t~~~v~~a~~~~~ 448 (490)
+++|+..-+..+.
T Consensus 328 ~l~d~~~q~~~~~ 340 (428)
T TIGR00959 328 DLEDFLEQLRQIK 340 (428)
T ss_pred CHHHHHHHHHHHH
Confidence 8899888777664
No 310
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.80 E-value=0.00017 Score=65.67 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=50.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC--------------C--CCCcHH-
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK--------------P--GGKSER- 283 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~--------------~--~~~s~~- 283 (490)
.++|+|+||+|||+++..++.... ..+..++|++... +...+...+ ..++.. . ...+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e~--~~~~~~~~~-~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~ 76 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLEE--SPEELIENA-ESLGWDLERLEDEGLLAIVDADPDEIGPAE 76 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECCC--CHHHHHHHH-HHcCCChHHHHhcCCeEEEecCccccchhh
Confidence 378999999999999999887754 2345677775433 444443332 222211 0 000111
Q ss_pred -----HHHHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 284 -----HQLGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 284 -----~~~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
++...+...... .++.+||||++..+..
T Consensus 77 ~~~~~~~~~~i~~~~~~-~~~~~lviD~~~~~~~ 109 (187)
T cd01124 77 SSLRLELIQRLKDAIEE-FKAKRVVIDSVSGLLL 109 (187)
T ss_pred hhhhHHHHHHHHHHHHH-hCCCEEEEeCcHHHhh
Confidence 223334433332 3467999999998764
No 311
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.79 E-value=0.00075 Score=76.67 Aligned_cols=149 Identities=17% Similarity=0.253 Sum_probs=105.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHhc
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGG-KSERHQLGAILKYFDT 295 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~-~s~~~~~~~l~~~l~~ 295 (490)
...-.++|.||..+|||+++..+++..+ .+|+.+|.....+..+.+..... ...| .+.+ ...+.+++++
T Consensus 886 ~~~fP~LiQGpTSSGKTSMI~yla~~tg----hkfVRINNHEHTdlqeYiGTyvT----dd~G~lsFk--EGvLVeAlR~ 955 (4600)
T COG5271 886 LSNFPLLIQGPTSSGKTSMILYLARETG----HKFVRINNHEHTDLQEYIGTYVT----DDDGSLSFK--EGVLVEALRR 955 (4600)
T ss_pred hcCCcEEEecCCCCCcchHHHHHHHHhC----ccEEEecCcccchHHHHhhceee----cCCCceeee--hhHHHHHHhc
Confidence 4566899999999999999999999865 68899998887665554433221 1111 1111 1245566654
Q ss_pred CCCeEEEEEecCccccccCHHHHHHhHhCC-----------CCCCCcEEEEEecCCCCh---hHhhhHHhhhccCCCCee
Q psy200 296 KHKSILLILDEIDALESRKQTILYTIFEWP-----------SIPGSKLVLVGVANALDL---TDRMLPRLQANVTLQPTL 361 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~~~~~L~~l~~~~-----------~~~~~~vilI~~tn~~~~---~~~l~~~l~~R~~~~~~~ 361 (490)
+ .-|++||+.-....-.++|.++++-. -.++..+.+.++-|+... ...+.++++.||- .
T Consensus 956 G---yWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFl----E 1028 (4600)
T COG5271 956 G---YWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFL----E 1028 (4600)
T ss_pred C---cEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhH----h
Confidence 3 48999999988877778888876532 124667777777774432 2345678999995 7
Q ss_pred EEeCCCCHHHHHHHHHHHHhc
Q psy200 362 MNFAPYSREQILEIISQKLKQ 382 (490)
Q Consensus 362 i~~~pls~~e~~~il~~~l~~ 382 (490)
++|.....+|+..||..+|.-
T Consensus 1029 ~hFddipedEle~ILh~rc~i 1049 (4600)
T COG5271 1029 MHFDDIPEDELEEILHGRCEI 1049 (4600)
T ss_pred hhcccCcHHHHHHHHhccCcc
Confidence 999999999999999987654
No 312
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.78 E-value=0.001 Score=66.47 Aligned_cols=144 Identities=14% Similarity=0.181 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh-h--cCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE-I--KDAFKTIYINCNSVRNAASVYETIVNELKLKPG-GKSERHQLGAILKYF 293 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~-~--~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~-~~s~~~~~~~l~~~l 293 (490)
..+.+.|+||.|+||||++-.+|..+. . ..++.++..++..+ ...+-+...++-|+.+.. -.+..++...+....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI-GA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI-GAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh-hHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 478999999999999999988888775 2 23445666666555 233334555555665432 135666666665543
Q ss_pred hcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHH
Q psy200 294 DTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSRE 370 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~ 370 (490)
.. -+|+||=+.+=.... ...|..+++... .-...+++.+|...+....+..++. .|.+ ..+-|..+++.
T Consensus 281 ~~----d~ILVDTaGrs~~D~~~i~el~~~~~~~~-~i~~~Lvlsat~K~~dlkei~~~f~-~~~i--~~~I~TKlDET 351 (407)
T COG1419 281 DC----DVILVDTAGRSQYDKEKIEELKELIDVSH-SIEVYLVLSATTKYEDLKEIIKQFS-LFPI--DGLIFTKLDET 351 (407)
T ss_pred cC----CEEEEeCCCCCccCHHHHHHHHHHHhccc-cceEEEEEecCcchHHHHHHHHHhc-cCCc--ceeEEEccccc
Confidence 32 499999888754332 234555555442 2223344444432222333344432 3333 35666666654
No 313
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.77 E-value=0.0026 Score=62.72 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC--CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE--TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~--~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
++++|-++.++++..++.....+. ..+.++|.||.|+|||++++.+.+.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998765433 567899999999999999999988875
No 314
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.73 E-value=9.1e-05 Score=61.03 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhh
Q psy200 222 MYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l~ 244 (490)
|+|+|++|+|||++++.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998876
No 315
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.72 E-value=0.00022 Score=78.42 Aligned_cols=111 Identities=20% Similarity=0.268 Sum_probs=59.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHH-----HHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAI-----LKYF 293 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l-----~~~l 293 (490)
.+.++|+|+|||||||+++++.+.+........+.+.++...-.. .+.+..+.. ..+...+.... ....
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~----~L~e~~g~~--a~Tih~lL~~~~~~~~~~~~ 411 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK----RLGEVTGLT--ASTIHRLLGYGPDTFRHNHL 411 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH----HHHHhcCCc--cccHHHHhhccCCccchhhh
Confidence 458999999999999999999888763322223444333321112 222222211 01111111110 0001
Q ss_pred hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 294 DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
.......+|||||+..+... .+..++... ..+.+++++|-.+
T Consensus 412 ~~~~~~~llIvDEaSMvd~~---~~~~Ll~~~-~~~~rlilvGD~~ 453 (720)
T TIGR01448 412 EDPIDCDLLIVDESSMMDTW---LALSLLAAL-PDHARLLLVGDTD 453 (720)
T ss_pred hccccCCEEEEeccccCCHH---HHHHHHHhC-CCCCEEEEECccc
Confidence 11123459999999999653 344444422 2567899987665
No 316
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.71 E-value=0.00056 Score=64.98 Aligned_cols=113 Identities=17% Similarity=0.224 Sum_probs=65.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC--------------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP-------------------- 277 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~-------------------- 277 (490)
.+..++|+|+||+|||+++..++.+.. ..+..++|+.... ++.++.+.+. .++...
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~~ 95 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGIG 95 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccccc
Confidence 567899999999999999988766542 2345677776543 4555544322 221100
Q ss_pred -----------CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH----HHHHHhHhCCCCCCCcEEEE
Q psy200 278 -----------GGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ----TILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 278 -----------~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~----~~L~~l~~~~~~~~~~vilI 335 (490)
...+..++...+.+.+... +.-+|+||-+..+..... ..++.+..+....+..++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt 167 (237)
T TIGR03877 96 EAAEREKYVVKDPTDVRELIDVLRQAIRDI-NAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFV 167 (237)
T ss_pred cccccccccccCcccHHHHHHHHHHHHHHh-CCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0123455556666655442 355899999998754431 23344444333344444554
No 317
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0028 Score=67.10 Aligned_cols=201 Identities=19% Similarity=0.221 Sum_probs=119.4
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT 295 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~ 295 (490)
.....+++++||+|+|||.+++.+++. . ..+ ..+++..... .+.+.+.......+..+...
T Consensus 15 ~~~~~~v~~~g~~~~~~t~~~~~~a~~-~--~~~--~~~~~~~~~~--------------~~~~~~~~~~~~~~~~a~~~ 75 (494)
T COG0464 15 IEPPKGVLLHGPPGTGKTLLARALANE-G--AEF--LSINGPEILS--------------KYVGESELRLRELFEEAEKL 75 (494)
T ss_pred CCCCCCceeeCCCCCchhHHHHHHHhc-c--Ccc--cccCcchhhh--------------hhhhHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999987 2 222 3343333211 33445566677777666553
Q ss_pred CCCeEEEEEecCccccccCHH-----------HHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEe
Q psy200 296 KHKSILLILDEIDALESRKQT-----------ILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNF 364 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~~~~-----------~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~ 364 (490)
.+.++++||++.+...... .+..+++-.. ... +++++.++..+..+....+. .||. ..+.+
T Consensus 76 --~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~-~~~~---~~~~~ 147 (494)
T COG0464 76 --APSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRP-GRFD---REIEV 147 (494)
T ss_pred --CCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCc-cccc---eeeec
Confidence 3479999999999766322 2333333223 444 88888887655444322221 2333 46777
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHhcc-ccCCcccccCHHHHHH
Q psy200 365 APYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIR-KAIDITNHLIDLTYDNV-KENGEVTGIGLKEVLG 442 (490)
Q Consensus 365 ~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r-~ai~ll~~a~~~a~~~~-~~~~~~~~It~~~v~~ 442 (490)
..+......+++........ .-.+..++.++. ...|... .+-.++..+...+..+. ........++.+++..
T Consensus 148 ~~~~~~~~~ei~~~~~~~~~---~~~~~~~~~~a~---~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 221 (494)
T COG0464 148 NLPDEAGRLEILQIHTRLMF---LGPPGTGKTLAA---RTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEE 221 (494)
T ss_pred CCCCHHHHHHHHHHHHhcCC---CcccccHHHHHH---hcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHH
Confidence 77777666666665544331 112445566665 3444333 33345656655555443 1112245788999999
Q ss_pred HHHHhcc
Q psy200 443 VISSVYC 449 (490)
Q Consensus 443 a~~~~~~ 449 (490)
++..+.+
T Consensus 222 ~l~~~~~ 228 (494)
T COG0464 222 ALKKVLP 228 (494)
T ss_pred HHHhcCc
Confidence 9999765
No 318
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.70 E-value=0.00054 Score=66.80 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhhcc--------CCCCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCCCH-HHHHHHH
Q psy200 200 EVQLEGIRQFLLGHVNN--------ETSGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVRNA-ASVYETI 269 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~--------~~~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~~~-~~l~~~i 269 (490)
+...+.+.+.|...+.. ..++.++|+||.|+||||++..++..+... ....+..+++...... ...+..+
T Consensus 167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~ 246 (282)
T TIGR03499 167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTY 246 (282)
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHH
Confidence 34445555666554421 135688899999999999999999988644 3467777776654322 2223333
Q ss_pred HHHhcCCCC-CCcHHHHHHHHHHHHhcCCCeEEEEEecC
Q psy200 270 VNELKLKPG-GKSERHQLGAILKYFDTKHKSILLILDEI 307 (490)
Q Consensus 270 ~~~l~~~~~-~~s~~~~~~~l~~~l~~~~~~~vI~IDEi 307 (490)
...++.+.. .....++.+.+..+ ...-+||||..
T Consensus 247 ~~~~~~p~~~~~~~~~l~~~l~~~----~~~d~vliDt~ 281 (282)
T TIGR03499 247 AKILGVPVKVARDPKELRKALDRL----RDKDLILIDTA 281 (282)
T ss_pred HHHhCCceeccCCHHHHHHHHHHc----cCCCEEEEeCC
Confidence 344443322 12334444444332 22458888864
No 319
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.70 E-value=0.00025 Score=66.74 Aligned_cols=88 Identities=25% Similarity=0.268 Sum_probs=52.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH--------hcCCCCCCcHHHHH---
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE--------LKLKPGGKSERHQL--- 286 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~--------l~~~~~~~s~~~~~--- 286 (490)
.+..++|+|+||+|||+++..++.+... .+..++|+++. ..+...+ .++... +.... ..+..+..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i 97 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFE-PSSFEEQSEAI 97 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEe-CCCHHHHHHHH
Confidence 4568899999999999999999887642 35678888876 2233322 222221 11100 11222322
Q ss_pred HHHHHHHhcCCCeEEEEEecCcccc
Q psy200 287 GAILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 287 ~~l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
+.+...+. .+..+||||.+..+.
T Consensus 98 ~~~~~~~~--~~~~lvVIDsi~al~ 120 (225)
T PRK09361 98 RKAEKLAK--ENVGLIVLDSATSLY 120 (225)
T ss_pred HHHHHHHH--hcccEEEEeCcHHHh
Confidence 22333332 456799999998765
No 320
>KOG3347|consensus
Probab=97.70 E-value=5.5e-05 Score=64.32 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=49.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
...+|||+|-||+||||++..++... .+.|++++.......++...-...... -...+.+.+.|..++.+++
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~------~~~~i~isd~vkEn~l~~gyDE~y~c~--i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT------GLEYIEISDLVKENNLYEGYDEEYKCH--ILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh------CCceEehhhHHhhhcchhcccccccCc--cccHHHHHHHHHHHHhcCC
Confidence 35689999999999999999999764 456677776655555555443333222 2356777788877776643
No 321
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.0019 Score=64.82 Aligned_cols=167 Identities=11% Similarity=0.147 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhhhc-----cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHh
Q psy200 200 EVQLEGIRQFLLGHVN-----NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNEL 273 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~-----~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l 273 (490)
+..++.+.+.+...+. ...++.++|+||+|+||||++..++..+. ..+..+..+++...+ ...+-+......+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~l 295 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTI 295 (436)
T ss_pred HHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhc
Confidence 3444555554433332 12347889999999999999999998875 334566667665554 1222344444455
Q ss_pred cCCCC-CCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHH
Q psy200 274 KLKPG-GKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPR 350 (490)
Q Consensus 274 ~~~~~-~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~ 350 (490)
+.+.. ..+...+.+.+..+... .+.-+||||-..+..... ...|..++.... ....++++.++........+...
T Consensus 296 gipv~v~~d~~~L~~aL~~lk~~-~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~-PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 296 GFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTAGKNYRASETVEEMIETMGQVE-PDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred CCcEEecCCHHHHHHHHHHHHhc-cCCCEEEEeCccccCcCHHHHHHHHHHHhhcC-CCeEEEEECCccChHHHHHHHHH
Confidence 54432 23456666655544321 124599999998865432 223334443221 22223334333221111222333
Q ss_pred hhhccCCCCeeEEeCCCCHHHH
Q psy200 351 LQANVTLQPTLMNFAPYSREQI 372 (490)
Q Consensus 351 l~~R~~~~~~~i~~~pls~~e~ 372 (490)
+.. + +...+-|..++....
T Consensus 374 F~~-~--~idglI~TKLDET~k 392 (436)
T PRK11889 374 FKD-I--HIDGIVFTKFDETAS 392 (436)
T ss_pred hcC-C--CCCEEEEEcccCCCC
Confidence 332 2 335677887776543
No 322
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.69 E-value=0.00025 Score=78.19 Aligned_cols=110 Identities=25% Similarity=0.240 Sum_probs=58.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
.+.++|.|++||||||+++.+...+.. .++.++.+ ++.. ... ..+....+.. ..+...+...+.........
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~-~g~~V~~~-ApTg-~Aa---~~L~~~~g~~--a~Ti~~~~~~~~~~~~~~~~ 439 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEA-AGYRVIGA-ALSG-KAA---EGLQAESGIE--SRTLASLEYAWANGRDLLSD 439 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEE-eCcH-HHH---HHHHhccCCc--eeeHHHHHhhhccCcccCCC
Confidence 468899999999999999999877652 24444443 2211 111 1111111211 11222221111110011134
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
..+|||||+-.+... .+..++......+++++++|-.+
T Consensus 440 ~~llIvDEasMv~~~---~~~~Ll~~~~~~~~kliLVGD~~ 477 (744)
T TIGR02768 440 KDVLVIDEAGMVGSR---QMARVLKEAEEAGAKVVLVGDPE 477 (744)
T ss_pred CcEEEEECcccCCHH---HHHHHHHHHHhcCCEEEEECChH
Confidence 569999999998654 33444443333578899987443
No 323
>PLN02674 adenylate kinase
Probab=97.69 E-value=0.00064 Score=64.32 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
....++|.|+||+||+|+++.+++.++
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 356789999999999999999998853
No 324
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.68 E-value=0.0086 Score=61.27 Aligned_cols=219 Identities=13% Similarity=0.170 Sum_probs=108.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-HHHHHHHHHHHhcCCCCC----CcHHH-HHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-AASVYETIVNELKLKPGG----KSERH-QLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-~~~l~~~i~~~l~~~~~~----~s~~~-~~~~l~~ 291 (490)
.+..++|+|++|+||||++..++..+. ..++.+..++|-..+. ..+.+..+...++.+... ..... ..+.+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 356889999999999999999998875 3356777787766653 223334455555543221 12222 2233443
Q ss_pred HHhcCCCeEEEEEecCccccccCHHHHHHhHhCC-CCCCCcEEEEEec-CCCChhHhhhHHhhhccCCCCeeEEeCCCCH
Q psy200 292 YFDTKHKSILLILDEIDALESRKQTILYTIFEWP-SIPGSKLVLVGVA-NALDLTDRMLPRLQANVTLQPTLMNFAPYSR 369 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~-~~~~~~vilI~~t-n~~~~~~~l~~~l~~R~~~~~~~i~~~pls~ 369 (490)
+.. ...-+||||=...+... ...+..+.... ......++++..+ .-.+..+ ....+...+++ ..+-|..++.
T Consensus 178 ~~~--~~~DvViIDTaGr~~~d-~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~-~a~~F~~~~~~--~g~IlTKlD~ 251 (429)
T TIGR01425 178 FKK--ENFDIIIVDTSGRHKQE-DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA-QAKAFKDSVDV--GSVIITKLDG 251 (429)
T ss_pred HHh--CCCCEEEEECCCCCcch-HHHHHHHHHHhhhcCCcEEEEEeccccChhHHH-HHHHHHhccCC--cEEEEECccC
Confidence 332 23459999998876432 22333332221 1122234444332 2212211 23444443333 4677888876
Q ss_pred HHHHH-HHHHHHhc-c-------CC----CCCCCHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhcc-ccCCcccc
Q psy200 370 EQILE-IISQKLKQ-T-------DK----FNMFNAS-ALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNV-KENGEVTG 434 (490)
Q Consensus 370 ~e~~~-il~~~l~~-~-------~~----~~~~~~~-~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~-~~~~~~~~ 434 (490)
+...- +|.-.... . +. -..|+++ .+..| ..-||+..++.-.+.++....... .+......
T Consensus 252 ~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~ri-----lgmgDi~~L~ek~~~~~~~~~~~~~~~k~~~~~ 326 (429)
T TIGR01425 252 HAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKL-----LGMGDIEGLIDKVQDLKLDDNEKALIEKLKEGT 326 (429)
T ss_pred CCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHH-----hcCCCcHHHHHHHHHhhhHHHHHHHHHHHHhCC
Confidence 53321 11111100 0 11 1123332 22222 246888877775555543321100 00001347
Q ss_pred cCHHHHHHHHHHhc
Q psy200 435 IGLKEVLGVISSVY 448 (490)
Q Consensus 435 It~~~v~~a~~~~~ 448 (490)
.+++|+..-+..+.
T Consensus 327 f~l~D~~~q~~~i~ 340 (429)
T TIGR01425 327 FTLRDMYEQFQNLL 340 (429)
T ss_pred CCHHHHHHHHHHHH
Confidence 88999988777764
No 325
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.67 E-value=8.1e-05 Score=69.22 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLV 240 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~ 240 (490)
.+..++|||+||+||||+|+.+.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 35679999999999999999885
No 326
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.67 E-value=0.00038 Score=72.19 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=53.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC------CCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG------GKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~------~~s~~~~~~~l~~ 291 (490)
.+..++|+|+||+|||+++..++..+. ..+..++|++... +..++... +..++.... ......+.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~---- 150 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILA---- 150 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHH----
Confidence 456889999999999999999998775 2345788887543 34444322 344443111 112333332
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
.+.. .++.+||||+++.+..
T Consensus 151 ~i~~-~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 151 TIEE-EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHh-hCCCEEEEechhhhcc
Confidence 2322 3567999999998864
No 327
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.66 E-value=0.00015 Score=73.14 Aligned_cols=112 Identities=19% Similarity=0.290 Sum_probs=64.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC------CCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG------GKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~------~~s~~~~~~~l~~ 291 (490)
.+..++|+|+||+|||+++..++..+.. .+..++|++... +..++.. -...++.... ....+.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~---- 152 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLEDILA---- 152 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHHHHH----
Confidence 4568999999999999999999987753 234778887543 3333322 2334443211 112233333
Q ss_pred HHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 292 YFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
.+.. .++.+||||+++.+.... .+.+..+.++....+..+++++-.
T Consensus 153 ~i~~-~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghv 209 (372)
T cd01121 153 SIEE-LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHV 209 (372)
T ss_pred HHHh-cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 3322 357799999999885321 122333444433345566666543
No 328
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=97.65 E-value=0.0062 Score=60.75 Aligned_cols=220 Identities=13% Similarity=0.158 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHhhhccC---------------CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 200 EVQLEGIRQFLLGHVNNE---------------TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~~---------------~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
.+.+++|.+|++...... -+..+++.|..=..=..+...+...+....+..++.++...+.+.+.
T Consensus 55 ~~~f~~l~~Fi~~~~~~~~~~~~~~~~~~~~~~IPtA~lltGvN~~dh~~~F~~L~~~L~~~~~~~vv~L~S~dc~~lk~ 134 (330)
T PF07034_consen 55 SKLFDDLVDFIRNSHSSDESSARDWASQMNSREIPTALLLTGVNIPDHDLLFEQLSERLQSSVGPYVVRLNSKDCSNLKS 134 (330)
T ss_pred HHHHHHHHHHHHhhcCccccccccccccccccccchHHHHhCCCCccHHHHHHHHHHHHHhCCCcEEEEEecccchHHHH
Confidence 566677777777654321 22356778988888888999999988765566788888888888899
Q ss_pred HHHHHHHHhcCCCCCC----------------cHHHHHHHHHHH------------Hh---cCCCeEEEEEecCcccccc
Q psy200 265 VYETIVNELKLKPGGK----------------SERHQLGAILKY------------FD---TKHKSILLILDEIDALESR 313 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~----------------s~~~~~~~l~~~------------l~---~~~~~~vI~IDEid~l~~~ 313 (490)
.+..|+.++.....+. +...+....... .. ....++||+|+|++.+...
T Consensus 135 ~lk~iv~ql~~~~~~~~~~~~~~~~~~~~~~yd~~~L~~wy~~~~~~~~~~~~~~~~~~~~~~~~~lVIi~eD~EsF~~~ 214 (330)
T PF07034_consen 135 ALKSIVRQLMSDKSDVDEDEEEEEKGQRRLNYDMDILAAWYQNNTKKNDSPSKQKNFSSSRDKSPPLVIIFEDFESFDSQ 214 (330)
T ss_pred HHHHHHHHHHhcccccccccchhhcccCcCCCCHHHHHHHHHhhhccccchhhhcccccccccCCCEEEEEcccccCCHH
Confidence 9999998885322111 233333333310 00 1135899999999999764
Q ss_pred CHHHHHHhHhCCCCCCCcE-EEEEecCCCChhHhhhH-HhhhccCCCCeeEEeCCCCHH-HHHHHHHHHHhccCCCCCCC
Q psy200 314 KQTILYTIFEWPSIPGSKL-VLVGVANALDLTDRMLP-RLQANVTLQPTLMNFAPYSRE-QILEIISQKLKQTDKFNMFN 390 (490)
Q Consensus 314 ~~~~L~~l~~~~~~~~~~v-ilI~~tn~~~~~~~l~~-~l~~R~~~~~~~i~~~pls~~-e~~~il~~~l~~~~~~~~~~ 390 (490)
-..-|..++.. .....++ +++|+++..+.....++ ...+++. .-.|.-.+.. -+..++...+-.......+.
T Consensus 215 VL~dlI~ils~-~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~~L~----~~~F~~~~~~~~l~~v~~~~l~~~~~~~~l~ 289 (330)
T PF07034_consen 215 VLQDLILILSS-YLDRLPFVLIFGIATSVEAFHSRLPRSTLSLLR----IKKFQLQSSSEILERVLEKVLLSPDFPFKLG 289 (330)
T ss_pred HHHHHHHHHHh-ccCCcCEEEEEecCCChHHHHhhCCHHHHhhcC----ceEEEeCChHHHHHHHHHHHhcCCCCCceEC
Confidence 33323333321 2234445 45566666555555443 5555554 3345555544 45556666655544456788
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHh
Q psy200 391 ASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYD 424 (490)
Q Consensus 391 ~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~ 424 (490)
+..++.|..........+...+..++.|++....
T Consensus 290 ~~~~~~L~~~f~~~~~Sv~~fi~~lk~~~m~HF~ 323 (330)
T PF07034_consen 290 PRVLQFLLDRFLDHDFSVDSFISGLKYAYMEHFY 323 (330)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 9999999998888888999999888888765543
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.65 E-value=0.0024 Score=57.41 Aligned_cols=88 Identities=18% Similarity=0.223 Sum_probs=52.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-HHHHHHHHHHHhcCC----CCCCcHHHHH-HHHHHHHh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-AASVYETIVNELKLK----PGGKSERHQL-GAILKYFD 294 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-~~~l~~~i~~~l~~~----~~~~s~~~~~-~~l~~~l~ 294 (490)
.++++|++|+|||+++..++..+... +..++.++|..... ....+..+...++.+ .......++. +.+.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999887533 45778888776542 233344444444321 1112233322 33333232
Q ss_pred cCCCeEEEEEecCcccc
Q psy200 295 TKHKSILLILDEIDALE 311 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~ 311 (490)
....+||||......
T Consensus 81 --~~~d~viiDt~g~~~ 95 (173)
T cd03115 81 --ENFDVVIVDTAGRLQ 95 (173)
T ss_pred --CCCCEEEEECcccch
Confidence 234477799988764
No 330
>KOG0477|consensus
Probab=97.64 E-value=0.00064 Score=70.37 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=38.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC--------CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE--------TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~--------~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..++|++..+..+.-.|-..+... ..-++||.|.|||||+-+++++.+-.
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcC
Confidence 779999998888877775433222 22379999999999999999987653
No 331
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.64 E-value=7e-05 Score=69.85 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~ 241 (490)
.+.++|+||.|+||||+++.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999984
No 332
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.63 E-value=0.00012 Score=67.44 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=45.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCe
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKS 299 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~ 299 (490)
+.++|+||+|+||||++++++..+.......++.+.......... ...+ +.....+.....+.+.+..++.. .+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~-~~~~---i~q~~vg~~~~~~~~~i~~aLr~--~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES-KRSL---INQREVGLDTLSFENALKAALRQ--DP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC-ccce---eeecccCCCccCHHHHHHHHhcC--Cc
Confidence 578999999999999999999887533223333332211000000 0000 00011122223455556666653 46
Q ss_pred EEEEEecCc
Q psy200 300 ILLILDEID 308 (490)
Q Consensus 300 ~vI~IDEid 308 (490)
-+|++||+-
T Consensus 76 d~ii~gEir 84 (198)
T cd01131 76 DVILVGEMR 84 (198)
T ss_pred CEEEEcCCC
Confidence 799999984
No 333
>KOG2383|consensus
Probab=97.62 E-value=8.2e-05 Score=73.22 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=65.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH-------hcCCCCCCcHH---HHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE-------LKLKPGGKSER---HQL 286 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~-------l~~~~~~~s~~---~~~ 286 (490)
+.+++++|||..|||||+|...++..+.. ..+--.+ -..+++..+... .+....+.+.. +..
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~--i~rkqRv------HFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl 183 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPP--IWRKQRV------HFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPL 183 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCc--hhhhhhh------hHHHHHHHHHHHHHHHHHhccccCccccccccCCcc
Confidence 35789999999999999999999876531 0000011 234454444333 22211221111 223
Q ss_pred HHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCC
Q psy200 287 GAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANAL 341 (490)
Q Consensus 287 ~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~ 341 (490)
..+...+.. ..+||-+||++--.-.+.-+|..+|.... .-.+++++++|+.
T Consensus 184 ~~vA~eIa~--ea~lLCFDEfQVTDVADAmiL~rLf~~Lf--~~GvVlvATSNR~ 234 (467)
T KOG2383|consen 184 PVVADEIAE--EAILLCFDEFQVTDVADAMILKRLFEHLF--KNGVVLVATSNRA 234 (467)
T ss_pred HHHHHHHhh--hceeeeechhhhhhHHHHHHHHHHHHHHH--hCCeEEEEeCCCC
Confidence 333333332 25699999999876655556677766432 2268888888853
No 334
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.0024 Score=64.77 Aligned_cols=146 Identities=11% Similarity=0.138 Sum_probs=76.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHH-HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA-SVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~-~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
+..++|+||+|+||||++..++..+....+..+..+++...+... ..+...+..++.+.. ....+... ...+.. .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--~~~~~~~l-~~~l~~-~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY--PVKDIKKF-KETLAR-D 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee--ehHHHHHH-HHHHHh-C
Confidence 356889999999999999999986643345566777766554432 334444455554332 12223222 222322 2
Q ss_pred CeEEEEEecCcccccc--CHHHHHHhHhCCCC--CCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHH
Q psy200 298 KSILLILDEIDALESR--KQTILYTIFEWPSI--PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQ 371 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~--~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e 371 (490)
..-+||||=....... ..+.|..++..... ....++|+.++...+....+...+ +.++ ...+-|..++...
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~~~--~~glIlTKLDEt~ 373 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ESLN--YRRILLTKLDEAD 373 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cCCC--CCEEEEEcccCCC
Confidence 3458999976654322 22334444432211 122344444444322222222332 3333 3578888887654
No 335
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.61 E-value=0.00033 Score=65.15 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=54.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh----cCC---CCCCcHHHH---HH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL----KLK---PGGKSERHQ---LG 287 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l----~~~---~~~~s~~~~---~~ 287 (490)
.+..+.|+|+||+|||+++..++..... .+..++|+++.. .+...+.. +.... ... ..-.+..+. ..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR-QGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4678889999999999999999877642 346789998865 34443332 22211 000 000122222 33
Q ss_pred HHHHHHhcCCCeEEEEEecCcccc
Q psy200 288 AILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 288 ~l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
.+.+.+.. .++.+||||-+..+.
T Consensus 88 ~l~~~~~~-~~~~lvVIDSis~l~ 110 (209)
T TIGR02237 88 KTSKFIDR-DSASLVVVDSFTALY 110 (209)
T ss_pred HHHHHHhh-cCccEEEEeCcHHHh
Confidence 33333333 357799999999874
No 336
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.60 E-value=0.00036 Score=63.29 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=29.9
Q ss_pred CeEEEECCCCCcHHH-HHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 220 GSMYISGPPGTGKSA-SLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 220 ~~ill~GppGtGKTt-la~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+.++|.|++|+|||+ ++..+...+.......++++ ++......+++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVL-VPTRELAEQWAEELKKLG 78 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEE-eCCHHHHHHHHHHHHHHh
Confidence 789999999999999 55555554432222344554 332222334444444433
No 337
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0019 Score=67.20 Aligned_cols=90 Identities=16% Similarity=0.266 Sum_probs=52.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEeccCCCC-HHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINCNSVRN-AASVYETIVNELKLKPGG-KSERHQLGAILKYFD 294 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~~~~~~-~~~l~~~i~~~l~~~~~~-~s~~~~~~~l~~~l~ 294 (490)
.++.+.|+|+.|+||||++..++..+.... ...+..+++..... ..+.+......++..... .....+...+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh--
Confidence 467889999999999999999998764322 23455555543332 223344444444432221 2233444444332
Q ss_pred cCCCeEEEEEecCcccc
Q psy200 295 TKHKSILLILDEIDALE 311 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~ 311 (490)
...-+||||......
T Consensus 427 --~~~DLVLIDTaG~s~ 441 (559)
T PRK12727 427 --RDYKLVLIDTAGMGQ 441 (559)
T ss_pred --ccCCEEEecCCCcch
Confidence 234599999998764
No 338
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.00079 Score=60.68 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=23.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++++|.||+||||+++.+++.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4688999999999999999999986
No 339
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.59 E-value=0.00081 Score=65.21 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=35.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
.+..++|.|++|+|||+++..++..+....+..++|++.-. +..++...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHH
Confidence 56688999999999999999998876433356778876543 334444433
No 340
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.57 E-value=0.00084 Score=63.87 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=36.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
.+..++|.|+||+|||+++..++.......+..++|+++-. +...+...+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~--~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM--SKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC--CHHHHHHHH
Confidence 45688999999999999999998877544466778887544 344444443
No 341
>PHA02774 E1; Provisional
Probab=97.54 E-value=0.00071 Score=70.69 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=28.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
.++++|+||||||||+++.++++.+. +..+.++|.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~---G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLK---GKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEEC
Confidence 46899999999999999999999874 223455664
No 342
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.54 E-value=0.0016 Score=61.27 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=47.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
..+-.++||.|||||.+++.+++.++ ..++.+||....+ ...+.+.+.-....+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG----~~~~vfnc~~~~~--------------------~~~l~ril~G~~~~G-- 85 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALG----RFVVVFNCSEQMD--------------------YQSLSRILKGLAQSG-- 85 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT------EEEEETTSSS---------------------HHHHHHHHHHHHHHT--
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhC----CeEEEeccccccc--------------------HHHHHHHHHHHhhcC--
Confidence 45566899999999999999999886 5677789987633 333444444444332
Q ss_pred eEEEEEecCccccccC
Q psy200 299 SILLILDEIDALESRK 314 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~ 314 (490)
.-+.+||+++|....
T Consensus 86 -aW~cfdefnrl~~~v 100 (231)
T PF12774_consen 86 -AWLCFDEFNRLSEEV 100 (231)
T ss_dssp --EEEEETCCCSSHHH
T ss_pred -chhhhhhhhhhhHHH
Confidence 378889999987654
No 343
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.54 E-value=0.00047 Score=65.28 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=55.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcC-----CceEEEEeccCCCCHHHHHHHHHHHhcCCC----------CCCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKD-----AFKTIYINCNSVRNAASVYETIVNELKLKP----------GGKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~-----~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~----------~~~s~ 282 (490)
.+..+.|+|++|+|||+++..++....... +..++|++.....+...+ .++...++... ...+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 567888999999999999999986543222 357888887664343333 22333222110 00122
Q ss_pred HH---HHHHHHHHHhcCCCeEEEEEecCcccc
Q psy200 283 RH---QLGAILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 283 ~~---~~~~l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
.+ +...+...+...++..+||||-+..+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~ 128 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH
Confidence 23 333444445444478899999998763
No 344
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.52 E-value=0.00028 Score=68.83 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=66.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
...++++++|+-|.|||.|+..+++.+....+.+ .-...|+..+.+.+.... |.+ +....+...+.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R---------~HFh~FM~~vH~~l~~l~-g~~--dpl~~iA~~~~-- 128 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRR---------LHFHRFMARVHQRLHTLQ-GQT--DPLPPIADELA-- 128 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCcccccc---------ccHHHHHHHHHHHHHHHc-CCC--CccHHHHHHHH--
Confidence 4668999999999999999999999875222111 134566766666654322 222 33333333333
Q ss_pred CCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCC
Q psy200 297 HKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANA 340 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~ 340 (490)
+...||.+||++--.-.+.-+|..|++.. -...|++++++|.
T Consensus 129 ~~~~vLCfDEF~VtDI~DAMiL~rL~~~L--f~~GV~lvaTSN~ 170 (367)
T COG1485 129 AETRVLCFDEFEVTDIADAMILGRLLEAL--FARGVVLVATSNT 170 (367)
T ss_pred hcCCEEEeeeeeecChHHHHHHHHHHHHH--HHCCcEEEEeCCC
Confidence 22449999999875544444455555432 1236888888883
No 345
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.51 E-value=0.00013 Score=75.93 Aligned_cols=52 Identities=31% Similarity=0.379 Sum_probs=44.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc--CCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN--ETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~--~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
++++|.++.++++.++|...+.+ .....++|.||||+|||+|++.|++.+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 67999999999999999655432 35678999999999999999999998863
No 346
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.51 E-value=0.012 Score=58.94 Aligned_cols=135 Identities=22% Similarity=0.239 Sum_probs=90.5
Q ss_pred CeEEEEEecCcccccc-CHHHHHHhHhCCC-CCCCcEEEEEecCCCChhHhh---hHHhhhccCCCCeeEEeCCCCHHHH
Q psy200 298 KSILLILDEIDALESR-KQTILYTIFEWPS-IPGSKLVLVGVANALDLTDRM---LPRLQANVTLQPTLMNFAPYSREQI 372 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~-~~~~L~~l~~~~~-~~~~~vilI~~tn~~~~~~~l---~~~l~~R~~~~~~~i~~~pls~~e~ 372 (490)
...+|+|++++.+... ..+.+..+.+... .....++++...+..+-...+ ...+..++ ..+.+.+++..++
T Consensus 76 ~~klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~----~~~~~~~~~~~~~ 151 (340)
T PRK05574 76 DRKLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKA----VVVEAQPPKEAEL 151 (340)
T ss_pred cCeEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCc----eEEEcCCCCHHHH
Confidence 3458889999988654 2334444544321 122345555555543333333 34454444 3789999999999
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 373 LEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 373 ~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
..++...+... ...+++++++.+++ ..+||+..+.+-++.....+. ++ .||.++|...+.....
T Consensus 152 ~~~i~~~~~~~--g~~i~~~a~~~L~~---~~~~d~~~l~~El~KL~l~~~-~~-------~It~~~I~~~i~~~~~ 215 (340)
T PRK05574 152 PQWIQQRLKQQ--GLQIDAAALQLLAE---RVEGNLLALAQELEKLALLYP-DG-------KITLEDVEEAVPDSAR 215 (340)
T ss_pred HHHHHHHHHHc--CCCCCHHHHHHHHH---HhCchHHHHHHHHHHHHhhcC-CC-------CCCHHHHHHHHhhhhc
Confidence 99999999887 46689999999987 667889888887777665542 12 3889998888776543
No 347
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.49 E-value=0.00078 Score=66.29 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=56.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC------CCCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK------PGGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~------~~~~s~~~~~~~l~~ 291 (490)
.+..+.|+||+|+|||+|+..++.+... .+-.++|+++....+.. .+..++.. ......++....+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 5568889999999999999888777643 34567788765543321 23333321 111234455555554
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
.+.. +...+||||-+..+..
T Consensus 128 li~~-~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 128 LVRS-GAVDIIVVDSVAALVP 147 (321)
T ss_pred Hhhc-cCCcEEEEcchhhhcc
Confidence 4433 5577999999998864
No 348
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.49 E-value=0.0005 Score=73.57 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+.++|+|+|||||||++..+...+.
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~ 185 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALV 185 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 349
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.49 E-value=0.002 Score=60.82 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=56.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC---------------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK--------------------- 276 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~--------------------- 276 (490)
.+..++|+|+||+|||+++..++.+... .+..++|++... +...+... ...++..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~--~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~~ 94 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEE--SRESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEKE 94 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccC--CHHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccccc
Confidence 5678999999999999999987765432 344677776532 33333222 1111110
Q ss_pred --C--CCCcHHHHHHHHHHHHhcCC-CeEEEEEecCcccccc
Q psy200 277 --P--GGKSERHQLGAILKYFDTKH-KSILLILDEIDALESR 313 (490)
Q Consensus 277 --~--~~~s~~~~~~~l~~~l~~~~-~~~vI~IDEid~l~~~ 313 (490)
+ .+.+..++...+.+.....+ ++.+++||.+..+...
T Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~ 136 (229)
T TIGR03881 95 DEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLD 136 (229)
T ss_pred cccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhcc
Confidence 0 12345666666666655432 4568999999988543
No 350
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.49 E-value=0.00012 Score=61.52 Aligned_cols=31 Identities=42% Similarity=0.693 Sum_probs=25.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
.++|+|++|+||||+++.+++.++ +.++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~----~~~i~~d 31 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG----FPVISMD 31 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT----CEEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC----CeEEEec
Confidence 478999999999999999999875 5555543
No 351
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.49 E-value=0.001 Score=60.28 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++|+|+||+||||+++.+++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999999864
No 352
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.49 E-value=0.00075 Score=72.44 Aligned_cols=117 Identities=17% Similarity=0.219 Sum_probs=62.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcC--CceEEEEeccCCCCHHHHHHHHHHHhcCCCC--------CCcHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKD--AFKTIYINCNSVRNAASVYETIVNELKLKPG--------GKSERHQLGA 288 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~--~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~--------~~s~~~~~~~ 288 (490)
.+.++|+|+|||||||++..+...+.... ....+.+..+...-...+.+.+...+..... ......+-.+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 56899999999999999999988764211 2234555555443344444443322211000 0011111111
Q ss_pred HHHH-----Hhc-CCC---eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 289 ILKY-----FDT-KHK---SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 289 l~~~-----l~~-~~~---~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
+... +.. ... .-+|||||+-.+.- ..+..+++.. ..+.++|++|-.+
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~---~lm~~ll~al-~~~~rlIlvGD~~ 302 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL---PMMARLIDAL-PPHARVIFLGDRD 302 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccH---HHHHHHHHhc-ccCCEEEEecchh
Confidence 1110 000 111 24999999998853 4445555432 3568999998665
No 353
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.48 E-value=0.00082 Score=75.49 Aligned_cols=107 Identities=24% Similarity=0.226 Sum_probs=57.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh---c
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD---T 295 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~---~ 295 (490)
...++|+|.+||||||+++.+...+. ..++.++.+ ++.. ... ..|-... |.....+..++..... .
T Consensus 362 ~~v~vv~G~AGTGKTT~l~~~~~~~e-~~G~~V~~~-ApTG-kAA---~~L~e~t-----Gi~a~TI~sll~~~~~~~~~ 430 (988)
T PRK13889 362 RDLGVVVGYAGTGKSAMLGVAREAWE-AAGYEVRGA-ALSG-IAA---ENLEGGS-----GIASRTIASLEHGWGQGRDL 430 (988)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEe-cCcH-HHH---HHHhhcc-----CcchhhHHHHHhhhcccccc
Confidence 34778999999999999998876654 223444433 2211 111 1111111 1111222222211111 1
Q ss_pred CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 296 KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
.....||||||+-.+... .+..++......+.++++||-+.
T Consensus 431 l~~~~vlIVDEASMv~~~---~m~~LL~~a~~~garvVLVGD~~ 471 (988)
T PRK13889 431 LTSRDVLVIDEAGMVGTR---QLERVLSHAADAGAKVVLVGDPQ 471 (988)
T ss_pred cccCcEEEEECcccCCHH---HHHHHHHhhhhCCCEEEEECCHH
Confidence 123469999999988654 34455544334678999998664
No 354
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.48 E-value=0.00045 Score=61.92 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=59.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCC----cHHHHHHHHHHHHhcC
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGK----SERHQLGAILKYFDTK 296 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~----s~~~~~~~l~~~l~~~ 296 (490)
.++|+|++|+|||+++..++..++ ..++|+..... ...++...+..+......+. ...++.+.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~----~~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~--- 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG----LQVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA--- 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC----CCcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc---
Confidence 689999999999999999988753 24566654443 34455555544433211111 1112333332222
Q ss_pred CCeEEEEEecCcccccc----C-----HHHHHHhHhCCCCCCCcEEEEE
Q psy200 297 HKSILLILDEIDALESR----K-----QTILYTIFEWPSIPGSKLVLVG 336 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~----~-----~~~L~~l~~~~~~~~~~vilI~ 336 (490)
.+.-+|+||-+..+... . ...+..++++....+..+++++
T Consensus 75 ~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs 123 (170)
T PRK05800 75 APGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVT 123 (170)
T ss_pred CCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 22348999998877421 1 1233344444333455666663
No 355
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.011 Score=59.45 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=64.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcCCCCCC----cHHHH-HHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKLKPGGK----SERHQ-LGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~~~~~----s~~~~-~~~l~~ 291 (490)
++..|+++|--|+||||++-.++..+.. .+..+..+.|..++ -..+-+..+..+++.++.+. +..++ .+.+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999999975 66677777777664 34556788888887765433 23333 334443
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
+... ..-+||||=+.++.-
T Consensus 178 ak~~--~~DvvIvDTAGRl~i 196 (451)
T COG0541 178 AKEE--GYDVVIVDTAGRLHI 196 (451)
T ss_pred HHHc--CCCEEEEeCCCcccc
Confidence 3332 245899998887753
No 356
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.45 E-value=0.0016 Score=61.71 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=56.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC---------------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK--------------------- 276 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~--------------------- 276 (490)
.+..++|+|++|+|||+++..++.... ..+..++|+.... +..+++..+ ..++..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEeccccccc
Confidence 567889999999999999999976542 2355778887643 445554432 222211
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccc
Q psy200 277 PGGKSERHQLGAILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 277 ~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
+.....+.+...+.+.+.. .++.+|+||++-.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~-~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKS-KREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHh-cCCCEEEEecHHHHH
Confidence 0112234555555555554 356699999998653
No 357
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.45 E-value=0.00085 Score=67.69 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=43.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
...++++.||+|||||+++.++........+ ...+...++..+.. ..+..-+
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---------~f~T~a~Lf~~L~~-------------------~~lg~v~ 259 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---------GTITVAKLFYNIST-------------------RQIGLVG 259 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---------CcCcHHHHHHHHHH-------------------HHHhhhc
Confidence 4678999999999999999998776211111 23344555444322 1122224
Q ss_pred CeEEEEEecCccccccC
Q psy200 298 KSILLILDEIDALESRK 314 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~ 314 (490)
+.-+|+|||+..+.-..
T Consensus 260 ~~DlLI~DEvgylp~~~ 276 (449)
T TIGR02688 260 RWDVVAFDEVATLKFAK 276 (449)
T ss_pred cCCEEEEEcCCCCcCCc
Confidence 45699999999975443
No 358
>PRK05973 replicative DNA helicase; Provisional
Probab=97.44 E-value=0.0015 Score=61.45 Aligned_cols=114 Identities=13% Similarity=0.211 Sum_probs=62.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC------------CCCcHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP------------GGKSERHQ 285 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~------------~~~s~~~~ 285 (490)
++..++|.|+||+|||+++..++.+... .+..++|++... +..++...+. .++... .......+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEe--s~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEY--TEQDVRDRLR-ALGADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeC--CHHHHHHHHH-HcCCChHHhccceEeecCCCCCHHHH
Confidence 5668899999999999999998876642 355677775543 4455544432 222210 01122222
Q ss_pred HHHHHHHHhcCCCeEEEEEecCcccccc--CHH---HHHHhHhCCCCCCCcEEEEEecC
Q psy200 286 LGAILKYFDTKHKSILLILDEIDALESR--KQT---ILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 286 ~~~l~~~l~~~~~~~vI~IDEid~l~~~--~~~---~L~~l~~~~~~~~~~vilI~~tn 339 (490)
...+. .. .+.-+||||-++.+... ..+ .+..+..+....+..+++++-.+
T Consensus 139 i~~l~---~~-~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~ 193 (237)
T PRK05973 139 IARLA---SA-PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQID 193 (237)
T ss_pred HHHHH---Hh-hCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 22222 21 23459999999988533 111 22223333333455666655444
No 359
>PRK14532 adenylate kinase; Provisional
Probab=97.44 E-value=0.0017 Score=59.15 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++|.|+||+||||+++.+++.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998864
No 360
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.43 E-value=0.0015 Score=62.91 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEecc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~ 257 (490)
.+..++|+|+||+|||+++..++.+... .+..++|+..-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEec
Confidence 5678899999999999999998776432 34566777654
No 361
>PTZ00494 tuzin-like protein; Provisional
Probab=97.41 E-value=0.005 Score=62.04 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=100.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++.|+.+-..+.+.|.+. ....+++++|+|..|+||+++.+...... +...++++.-.. ++-++.+...|
T Consensus 371 ~~~V~R~~eE~~vRqvL~ql-d~aHPRIvV~TG~~GcGKSslcRsAvrkE----~~paV~VDVRg~---EDtLrsVVKAL 442 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQM-APSHPRIVALAGGSGGGRCVPCRRAVRVE----GVALVHVDVGGT---EDTLRSVVRAL 442 (664)
T ss_pred ccccchhhHHHHHHHHHhhc-cCCCCcEEEEecCCCCCchHHHHHHHHHc----CCCeEEEEecCC---cchHHHHHHHh
Confidence 45899999888888888764 44578899999999999999999887764 366677765443 44567777778
Q ss_pred cCCCCCCcHHHHHHHHHHHHhc-----CCC-e-EEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHh
Q psy200 274 KLKPGGKSERHQLGAILKYFDT-----KHK-S-ILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDR 346 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~-----~~~-~-~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~ 346 (490)
+.+.. +.-.++.+++.++..+ .++ | +|+-|-|-..|..--.+.+.-. ....-+.+++-..-..+.+..-
T Consensus 443 gV~nv-e~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLa---cDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 443 GVSNV-EVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLV---SDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred CCCCh-hhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHH---ccchhheeeeechHhhhchhhc
Confidence 77554 2233455555554422 233 2 3444556665543222222111 1112233333211111111222
Q ss_pred hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhc
Q psy200 347 MLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQ 382 (490)
Q Consensus 347 l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~ 382 (490)
.+| |++ .+.+++++..+.+++.++.+.-
T Consensus 519 ~LP----RLD----Fy~VPnFSr~QAf~YtqH~lDa 546 (664)
T PTZ00494 519 SSR----RLD----FYCIPPFSRRQAFAYAEHTLDA 546 (664)
T ss_pred cCc----cce----eEecCCcCHHHHHHHHhcccch
Confidence 233 443 6888999999999998877644
No 362
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.41 E-value=0.0025 Score=57.30 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 201 VQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 201 ~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
+.++.+...+.. ....+.++|.+|+|+|||.++-.++.++.. .++++
T Consensus 10 ~ai~~i~~~~~~---~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~ 56 (184)
T PF04851_consen 10 EAIARIINSLEN---KKEERRVLLNAPTGSGKTIIALALILELAR----KVLIV 56 (184)
T ss_dssp HHHHHHHHHHHT---TSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEE
T ss_pred HHHHHHHHHHHh---cCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEe
Confidence 444444444432 124789999999999999999988887752 55555
No 363
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0048 Score=67.24 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=58.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEeccCCC-CHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHhc
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINCNSVR-NAASVYETIVNELKLKPG-GKSERHQLGAILKYFDT 295 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~~~-~~s~~~~~~~l~~~l~~ 295 (490)
+..++|+||.|+||||++..++..+.... ...+..+.+.... ...+-+..+.+.++.+.. ..+..++.+.+.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-- 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-- 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc--
Confidence 56889999999999999999998774222 2355555555443 233445666666665432 235566665555432
Q ss_pred CCCeEEEEEecCcccccc
Q psy200 296 KHKSILLILDEIDALESR 313 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~ 313 (490)
..-+||||=.......
T Consensus 263 --~~D~VLIDTAGRs~~d 278 (767)
T PRK14723 263 --DKHLVLIDTVGMSQRD 278 (767)
T ss_pred --CCCEEEEeCCCCCccC
Confidence 2349999999876543
No 364
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.39 E-value=0.00055 Score=63.96 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|+|+||+||||+++.+++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 365
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.38 E-value=0.0013 Score=64.92 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC------CCCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK------PGGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~------~~~~s~~~~~~~l~~ 291 (490)
.+..+.|+||+|+|||+|+-.++.+... .+-.++|+++....++ ..+..++.. ....+.++....+..
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~~~~~-----~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEHALDP-----VYAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccccHHH-----HHHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4568889999999999999998877643 2346778876554333 223333321 111245555665555
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
.+.. +...+||||-+-.+..
T Consensus 128 li~s-~~~~lIVIDSvaal~~ 147 (325)
T cd00983 128 LVRS-GAVDLIVVDSVAALVP 147 (325)
T ss_pred HHhc-cCCCEEEEcchHhhcc
Confidence 4443 5677999999998864
No 366
>KOG0481|consensus
Probab=97.36 E-value=0.0036 Score=63.66 Aligned_cols=156 Identities=18% Similarity=0.254 Sum_probs=86.4
Q ss_pred CcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEE
Q psy200 182 DKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIY 253 (490)
Q Consensus 182 ~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~ 253 (490)
+.|........ ..++|+++..+.+...|-..-. -...-++||.|.|||-|+-|++.+-+-.. .-+|
T Consensus 320 d~Ye~is~sIA-PSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsP-----IaVY 393 (729)
T KOG0481|consen 320 DVYERISKSIA-PSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSP-----IAVY 393 (729)
T ss_pred cHHHHHhhccC-chhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCc-----eEEE
Confidence 45665554444 7899999999888887753211 11334799999999999999998844321 2234
Q ss_pred EeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH----HHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC---
Q psy200 254 INCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILK----YFDTKHKSILLILDEIDALESRKQTILYTIFEWPS--- 326 (490)
Q Consensus 254 v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~----~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~--- 326 (490)
.++-.- +...+...+.++ + . -++++.+ .+..+| |+.|||||.|...+.-++...|+-..
T Consensus 394 TSGKGS-SAAGLTASV~RD---~----~---tReFylEGGAMVLADgG---VvCIDEFDKMre~DRVAIHEAMEQQTISI 459 (729)
T KOG0481|consen 394 TSGKGS-SAAGLTASVIRD---P----S---TREFYLEGGAMVLADGG---VVCIDEFDKMREDDRVAIHEAMEQQTISI 459 (729)
T ss_pred ecCCCc-ccccceeeEEec---C----C---cceEEEecceEEEecCC---EEEeehhhccCchhhhHHHHHHHhhhHHH
Confidence 332211 111110000000 0 0 0011100 011122 89999999998887666655554221
Q ss_pred -------CCCCcEEEEEecCCC----Ch------hHhhhHHhhhccCC
Q psy200 327 -------IPGSKLVLVGVANAL----DL------TDRMLPRLQANVTL 357 (490)
Q Consensus 327 -------~~~~~vilI~~tn~~----~~------~~~l~~~l~~R~~~ 357 (490)
.-+++.-|++++|.. |. .-.+.+.+.+||.+
T Consensus 460 AKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDm 507 (729)
T KOG0481|consen 460 AKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDM 507 (729)
T ss_pred hhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccE
Confidence 235667777777722 11 11246788899985
No 367
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0013 Score=62.30 Aligned_cols=115 Identities=15% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-----HHHHHHHHHHHhcCCC-------CCCcHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-----AASVYETIVNELKLKP-------GGKSERH 284 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-----~~~l~~~i~~~l~~~~-------~~~s~~~ 284 (490)
..+..+.|+|+.||||||+++.+..-.. +...-+++....... ....+.+++..++... +..+..+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4677899999999999999999988764 333445555443321 2234556666655321 0111111
Q ss_pred -HHHHHHHHHhcCCCeEEEEEecCcccccc-CHHHHHHhH-hCCCCCCCcEEEE
Q psy200 285 -QLGAILKYFDTKHKSILLILDEIDALESR-KQTILYTIF-EWPSIPGSKLVLV 335 (490)
Q Consensus 285 -~~~~l~~~l~~~~~~~vI~IDEid~l~~~-~~~~L~~l~-~~~~~~~~~vilI 335 (490)
-+-.+.+++. -+|.+|+.||.-..... .|....+++ ++....+...++|
T Consensus 115 rQRi~IARALa--l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI 166 (268)
T COG4608 115 RQRIGIARALA--LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI 166 (268)
T ss_pred hhhHHHHHHHh--hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE
Confidence 2223444444 45889999999988765 333334433 2222334444554
No 368
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.35 E-value=0.0018 Score=61.09 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=33.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
.+..++|+|++|+|||+++..++..+. ..+..++|+.... +..+++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCC--CHHHHHHHH
Confidence 456899999999999999766655542 2346677877333 455555554
No 369
>PRK04328 hypothetical protein; Provisional
Probab=97.34 E-value=0.0033 Score=60.13 Aligned_cols=91 Identities=14% Similarity=0.213 Sum_probs=54.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC---------------C-----
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK---------------P----- 277 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~---------------~----- 277 (490)
.+..++|+|+||+|||+++..++.+.. ..+...+|++... ++..+... +..++.. .
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-~~ge~~lyis~ee--~~~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~~~ 97 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGVYVALEE--HPVQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGGIG 97 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEEeeC--CHHHHHHH-HHHcCCCHHHHhhcCCEEEEeccccccc
Confidence 567899999999999999998776532 2345677776544 34443332 2222210 0
Q ss_pred -----------CCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 278 -----------GGKSERHQLGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 278 -----------~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
......++.+.+.+.++.. +..+|+||-+-.+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDSlt~l~~~ 143 (249)
T PRK04328 98 SAAKREKYVVKDPDDVRELIDVLRQAIKDI-GAKRVVIDSVSTLYLT 143 (249)
T ss_pred cccccccccccCcccHHHHHHHHHHHHHhh-CCCEEEEeChhHhhcC
Confidence 0123344555555555442 3568999999876433
No 370
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.34 E-value=0.0018 Score=60.82 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=57.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcC-----CceEEEEeccCCCCHHHHHHHHHHHhcCC----------CCCCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKD-----AFKTIYINCNSVRNAASVYETIVNELKLK----------PGGKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~-----~~~~~~v~~~~~~~~~~l~~~i~~~l~~~----------~~~~s~ 282 (490)
.+..+.|+|++|+|||+++..++....... +..++|++......... +..+...+... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPER-LVQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHH-HHHHHHHhccchhhhhccEEEEeCCCH
Confidence 466888999999999999999987753222 26788888765433333 33333332211 011234
Q ss_pred HHHHHHHHHHHh--cCCCeEEEEEecCcccc
Q psy200 283 RHQLGAILKYFD--TKHKSILLILDEIDALE 311 (490)
Q Consensus 283 ~~~~~~l~~~l~--~~~~~~vI~IDEid~l~ 311 (490)
.++...+..... ...+..+||||-+..+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~ 127 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchhh
Confidence 555555554433 13567799999998874
No 371
>PRK09354 recA recombinase A; Provisional
Probab=97.33 E-value=0.002 Score=64.00 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=57.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC------CCCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK------PGGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~------~~~~s~~~~~~~l~~ 291 (490)
.+..+.|+||+|+|||+|+-.++..... .+-.++|++.....+. ..+..++.. ....+.++....+..
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4568889999999999999998877642 3456788876654443 233333321 111234555555555
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
.++. +...+||||-+-.+..
T Consensus 133 li~s-~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 133 LVRS-GAVDLIVVDSVAALVP 152 (349)
T ss_pred Hhhc-CCCCEEEEeChhhhcc
Confidence 4443 5677999999998864
No 372
>PRK08118 topology modulation protein; Reviewed
Probab=97.33 E-value=0.00074 Score=60.40 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..|+|+|++|+||||+++.|++.++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999875
No 373
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.33 E-value=0.0018 Score=59.25 Aligned_cols=94 Identities=18% Similarity=0.274 Sum_probs=51.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc---------CCceEEEEeccCCCCHHHHHHHHHHHhcCC------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK---------DAFKTIYINCNSVRNAASVYETIVNELKLK------------ 276 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~---------~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~------------ 276 (490)
.+..++|+|++|+|||+++..++..+... ....++|++.-.. ...+...+...+...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecc
Confidence 45689999999999999999999987632 3457888876553 333333332221110
Q ss_pred -----------CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 277 -----------PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 277 -----------~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
..+.......+.+.+.+....++.+||||-+..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 0111123344455555555344779999999888764
No 374
>PRK06762 hypothetical protein; Provisional
Probab=97.33 E-value=0.0042 Score=55.37 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..++|+|++|+||||+++.+++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998873
No 375
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.014 Score=58.49 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-HHHHHHHHHHHhcCCC-CCCcHHHHHHHHHHHHhc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-AASVYETIVNELKLKP-GGKSERHQLGAILKYFDT 295 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-~~~l~~~i~~~l~~~~-~~~s~~~~~~~l~~~l~~ 295 (490)
.+..++|+||.|+||||++..++..+. ..+..+..+++...+. ....|......++.+. ...+..++.+.+..+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 467889999999999999999998764 2345677777766654 3445666666666543 234566666666544311
Q ss_pred CCCeEEEEEecCcccc
Q psy200 296 KHKSILLILDEIDALE 311 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~ 311 (490)
...-+||||=.....
T Consensus 284 -~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 284 -NCVDHILIDTVGRNY 298 (407)
T ss_pred -CCCCEEEEECCCCCc
Confidence 224599999998865
No 376
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=97.32 E-value=0.0031 Score=62.08 Aligned_cols=131 Identities=20% Similarity=0.180 Sum_probs=89.1
Q ss_pred CeEEEEEecCcccccc-CHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHH
Q psy200 298 KSILLILDEIDALESR-KQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~-~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~ 374 (490)
...+|+|++++.+... ..+.|..++.. .....++|..++..+....+...+.. ++ ..+.|.+++..++..
T Consensus 46 ~~kliii~~~~~~~~~~~~~~L~~~l~~---~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~----~~i~~~~~~~~~~~~ 118 (302)
T TIGR01128 46 ERRLVELRNPEGKPGAKGLKALEEYLAN---PPPDTLLLIEAPKLDKRKKLTKWLKALKNA----QIVECKTPKEQELPR 118 (302)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHhc---CCCCEEEEEecCCCCHhHHHHHHHHHhcCe----eEEEecCCCHHHHHH
Confidence 3458999999998643 34555555543 22334444444433332332222322 54 379999999999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 375 IISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 375 il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
++...+... ...+++++++.++. ...||++.+.+.++.....+. + ..|+.++|...+....
T Consensus 119 ~i~~~~~~~--g~~i~~~a~~~l~~---~~~~d~~~l~~el~KL~~~~~--~------~~It~e~I~~~~~~~~ 179 (302)
T TIGR01128 119 WIQARLKKL--GLRIDPDAVQLLAE---LVEGNLLAIAQELEKLALYAP--D------GKITLEDVEEAVSDSA 179 (302)
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHH---HhCcHHHHHHHHHHHHHhhCC--C------CCCCHHHHHHHHhhhh
Confidence 999999987 46689999999987 667899999998887765532 2 2588888888776543
No 377
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.0058 Score=63.51 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=51.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEeccCCC-CHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINCNSVR-NAASVYETIVNELKLKPGG-KSERHQLGAILKYFD 294 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~~~~-~s~~~~~~~l~~~l~ 294 (490)
.++.++|+||.|+||||++..++..+.... ...+..+.+.... ...+-+..+...++..... ....+....+.+ +
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~-L- 332 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSE-L- 332 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHh-c-
Confidence 356889999999999999999998874332 2355566655443 2223344444444443211 122222222221 1
Q ss_pred cCCCeEEEEEecCcccc
Q psy200 295 TKHKSILLILDEIDALE 311 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~ 311 (490)
...-+++||......
T Consensus 333 --~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 333 --RNKHIVLIDTIGMSQ 347 (484)
T ss_pred --cCCCeEEeCCCCcCh
Confidence 223499999977654
No 378
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.30 E-value=0.00093 Score=63.72 Aligned_cols=89 Identities=18% Similarity=0.321 Sum_probs=61.4
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh-cCCCCCCcHHHHHHHHHHHHh
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL-KLKPGGKSERHQLGAILKYFD 294 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l-~~~~~~~s~~~~~~~l~~~l~ 294 (490)
..+.+.||++||.|+||||++.++.+++.......++.+. ++-+++..=-..| .....|.....+...|..++.
T Consensus 122 ~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIE-----DPIE~vh~skkslI~QREvG~dT~sF~~aLraALR 196 (353)
T COG2805 122 ESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIE-----DPIEYVHESKKSLINQREVGRDTLSFANALRAALR 196 (353)
T ss_pred hCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEec-----CchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhh
Confidence 3567899999999999999999999999755555666553 3433332211111 113345566777888888887
Q ss_pred cCCCeEEEEEecCcccc
Q psy200 295 TKHKSILLILDEIDALE 311 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~ 311 (490)
+. |-||+|-|+-.+.
T Consensus 197 eD--PDVIlvGEmRD~E 211 (353)
T COG2805 197 ED--PDVILVGEMRDLE 211 (353)
T ss_pred cC--CCEEEEeccccHH
Confidence 54 7799999998764
No 379
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.28 E-value=0.00052 Score=68.88 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=47.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHH-HHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYE-TIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~-~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
..+.++|+||+|+||||++++++..+.......++.+.- +.++.. .....+.....+.....+.+.+..++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEd-----p~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr-- 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIED-----PIEYVHRNKRSLINQREVGLDTLSFANALRAALR-- 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcC-----ChhhhccCccceEEccccCCCCcCHHHHHHHhhc--
Confidence 467899999999999999999998875322334444421 111110 000000111112222335555555565
Q ss_pred CCeEEEEEecCc
Q psy200 297 HKSILLILDEID 308 (490)
Q Consensus 297 ~~~~vI~IDEid 308 (490)
..|-+|++||+-
T Consensus 194 ~~pd~i~vgEir 205 (343)
T TIGR01420 194 EDPDVILIGEMR 205 (343)
T ss_pred cCCCEEEEeCCC
Confidence 357799999995
No 380
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.26 E-value=0.0016 Score=61.39 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=55.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC----------------C--C-
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK----------------P--G- 278 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~----------------~--~- 278 (490)
.+..++|+|+||+|||+++..++.+.....+-.++|+.... +...+.+.+- .++.. . .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee--~~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE--PPEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC--CHHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 66789999999999999998877554322145667776533 4444444322 22210 0 0
Q ss_pred --CCcHHHHHHHHHHHHhcCCCeEEEEEecCccc
Q psy200 279 --GKSERHQLGAILKYFDTKHKSILLILDEIDAL 310 (490)
Q Consensus 279 --~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l 310 (490)
......+...+.+.++.. ++.+++||-+..+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEEL-KPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHH-TSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhc-CCCEEEEECHHHH
Confidence 235666777777766552 2469999999988
No 381
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.26 E-value=0.0034 Score=65.31 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=52.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP------GGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~------~~~s~~~~~~~l~~ 291 (490)
.+..++|+|+||+||||++..++..+... +..++|++... +..++... +..++... ...... .+..
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~----~I~~ 164 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWE----QICA 164 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHH----HHHH
Confidence 56788999999999999999998877532 24678886543 34443322 22333211 111222 2333
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
.+.. .++.+||||.++.+..
T Consensus 165 ~i~~-~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 165 NIEE-ENPQACVIDSIQTLYS 184 (454)
T ss_pred HHHh-cCCcEEEEecchhhcc
Confidence 3332 3467999999998853
No 382
>PRK14528 adenylate kinase; Provisional
Probab=97.24 E-value=0.0038 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++|.|+||+||||+++.+++.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998864
No 383
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.0057 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..++|+||+|+||+|+++++.+..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 46688899999999999999998875
No 384
>PRK13808 adenylate kinase; Provisional
Probab=97.24 E-value=0.0028 Score=62.54 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|+||||+||||+++.|++.++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 385
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.23 E-value=0.04 Score=54.60 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=53.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHHHHhcCCC----CCCcH-HHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIVNELKLKP----GGKSE-RHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~~----~~~s~-~~~~~~l~~ 291 (490)
.+..++|+||+|+||||++..++..+.. .+..+..+++...... .+-+.......+... .+... ....+.+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 4568889999999999999999998863 3446666665544321 111222233333221 11122 223344443
Q ss_pred HHhcCCCeEEEEEecCcccccc
Q psy200 292 YFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~~ 313 (490)
+.. ...-+||||=...+...
T Consensus 192 ~~~--~~~D~ViIDTaGr~~~~ 211 (318)
T PRK10416 192 AKA--RGIDVLIIDTAGRLHNK 211 (318)
T ss_pred HHh--CCCCEEEEeCCCCCcCC
Confidence 333 23459999999887644
No 386
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.23 E-value=0.0017 Score=62.58 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=40.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC-CC-CCCcHHHHHHHHHHHHhcC-
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL-KP-GGKSERHQLGAILKYFDTK- 296 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~-~~-~~~s~~~~~~~l~~~l~~~- 296 (490)
..|+|+|-||+||||+++.+.+.+.. .+..++.++-. .+. +.. .+ ....++..+..+...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~-~~~~v~~i~~~------~~~------~~~~~y~~~~~Ek~~R~~l~s~v~r~l 68 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE-KGKEVVIISDD------SLG------IDRNDYADSKKEKEARGSLKSAVERAL 68 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH-TT--EEEE-TH------HHH-------TTSSS--GGGHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh-cCCEEEEEccc------ccc------cchhhhhchhhhHHHHHHHHHHHHHhh
Confidence 36889999999999999999998764 44556666411 111 000 11 1233444444444433221
Q ss_pred CCeEEEEEecCcccccc
Q psy200 297 HKSILLILDEIDALESR 313 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~ 313 (490)
.+..|||+|+...+-+-
T Consensus 69 s~~~iVI~Dd~nYiKg~ 85 (270)
T PF08433_consen 69 SKDTIVILDDNNYIKGM 85 (270)
T ss_dssp TT-SEEEE-S---SHHH
T ss_pred ccCeEEEEeCCchHHHH
Confidence 23469999999987543
No 387
>PRK07261 topology modulation protein; Provisional
Probab=97.21 E-value=0.00097 Score=59.90 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++|+|++|+||||+++.++..++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 388
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0015 Score=60.04 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
...-+.+|.||||+||||+++-++..+..
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 34456899999999999999999998863
No 389
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.20 E-value=0.0022 Score=57.32 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=47.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEE
Q psy200 222 MYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSIL 301 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~v 301 (490)
++|+|++|+|||+++..++.... -+++|+...... ..++...|.........+....+....+.+.+....+.-+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~----~~~~y~at~~~~-d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG----GPVTYIATAEAF-DDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC----CCeEEEEccCcC-CHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCE
Confidence 68999999999999999987622 356666544432 2344444333222112222222333333444433223448
Q ss_pred EEEecCcccc
Q psy200 302 LILDEIDALE 311 (490)
Q Consensus 302 I~IDEid~l~ 311 (490)
|+||-+..+.
T Consensus 77 VLIDclt~~~ 86 (169)
T cd00544 77 VLIDCLTLWV 86 (169)
T ss_pred EEEEcHhHHH
Confidence 9999987653
No 390
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.20 E-value=0.0017 Score=73.40 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=60.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH---h
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYF---D 294 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l---~ 294 (490)
..+.++|.|.+||||||+++.+...+. ..++.++-+ ++.. .....|-...+... .+... ++...- .
T Consensus 396 ~~r~~~v~G~AGTGKTt~l~~~~~~~e-~~G~~V~g~-ApTg----kAA~~L~e~~Gi~a--~TIas---~ll~~~~~~~ 464 (1102)
T PRK13826 396 PARIAAVVGRAGAGKTTMMKAAREAWE-AAGYRVVGG-ALAG----KAAEGLEKEAGIQS--RTLSS---WELRWNQGRD 464 (1102)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEE-cCcH----HHHHHHHHhhCCCe--eeHHH---HHhhhccCcc
Confidence 467899999999999999999987664 234444433 1111 11122222222211 12222 211110 1
Q ss_pred cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 295 TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
......||||||+-.+...... .++......+.++++||-..
T Consensus 465 ~l~~~~vlVIDEAsMv~~~~m~---~Ll~~~~~~garvVLVGD~~ 506 (1102)
T PRK13826 465 QLDNKTVFVLDEAGMVASRQMA---LFVEAVTRAGAKLVLVGDPE 506 (1102)
T ss_pred CCCCCcEEEEECcccCCHHHHH---HHHHHHHhcCCEEEEECCHH
Confidence 1133569999999998654433 44443334578899998664
No 391
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0021 Score=59.66 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+-|+|+.|+|||||++.++-...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 4677888999999999999999987653
No 392
>PRK14531 adenylate kinase; Provisional
Probab=97.19 E-value=0.0034 Score=57.02 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++|+|+||+||||+++.+++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999999864
No 393
>PRK14527 adenylate kinase; Provisional
Probab=97.19 E-value=0.0073 Score=55.23 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=24.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..++|+|+||+||||+++.+++.++
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999998864
No 394
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.18 E-value=0.026 Score=54.64 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=56.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHHHHhcCCC----CCCcH-HHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIVNELKLKP----GGKSE-RHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~~----~~~s~-~~~~~~l~~ 291 (490)
.++.++++|++|+||||++..++..+. ..+..+..+++-.++.. ..-+..+....+... .+... ....+.+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 457888999999999999999998875 33457777776655432 222333444444321 11122 222344443
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
+.. ...-+||||=...+..
T Consensus 150 ~~~--~~~D~ViIDT~G~~~~ 168 (272)
T TIGR00064 150 AKA--RNIDVVLIDTAGRLQN 168 (272)
T ss_pred HHH--CCCCEEEEeCCCCCcc
Confidence 333 2345999999988764
No 395
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.17 E-value=0.0055 Score=53.64 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=30.3
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
..+..++|+||.|+||+|+.+.++.-.. +....+++.+-..
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~v 67 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDV 67 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccc
Confidence 3567899999999999999999998765 3334455544444
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.018 Score=58.90 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=49.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc---CCceEEEEeccCCCCHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK---DAFKTIYINCNSVRNAASVYETIVNELKLKPG-GKSERHQLGAILKYF 293 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~---~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~-~~s~~~~~~~l~~~l 293 (490)
.+..+.|+|+.|+||||++..++..+... ....++..+.... ...+.+..+..-++.+.. .....++...+.. +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri-galEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI-GGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-L 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch-hHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-h
Confidence 45689999999999999999998764211 1223333333332 222334444555554332 1233444433333 2
Q ss_pred hcCCCeEEEEEecCccc
Q psy200 294 DTKHKSILLILDEIDAL 310 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l 310 (490)
...-+++||.....
T Consensus 268 ---~~~d~VLIDTaGrs 281 (420)
T PRK14721 268 ---RGKHMVLIDTVGMS 281 (420)
T ss_pred ---cCCCEEEecCCCCC
Confidence 22349999997544
No 397
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.16 E-value=0.0061 Score=58.68 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC----------------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL---------------------- 275 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~---------------------- 275 (490)
++..++|-|.||+|||+++..++..+....+..++|++.-. +..+++..++..+..
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm--~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM--SEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS---HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC--CHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHH
Confidence 45688899999999999999999988765557888886432 455666555544421
Q ss_pred ------------CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 276 ------------KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 276 ------------~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
.....+..++...+........+.-+||||-++.+..
T Consensus 96 ~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 96 AEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 1112344555555544333324556888888887765
No 398
>PRK02496 adk adenylate kinase; Provisional
Probab=97.16 E-value=0.004 Score=56.58 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++|.|+||+||||+++.++..++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998864
No 399
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.15 E-value=0.0013 Score=63.41 Aligned_cols=97 Identities=18% Similarity=0.298 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG 278 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~ 278 (490)
.+..++.|..++. ...+.++|+|++|+||||+++++...+.. ....++.+.-........ ..++....
T Consensus 65 ~~~~~~~l~~~~~-----~~~GlilisG~tGSGKTT~l~all~~i~~-~~~~iitiEdp~E~~~~~-----~~q~~v~~- 132 (264)
T cd01129 65 KPENLEIFRKLLE-----KPHGIILVTGPTGSGKTTTLYSALSELNT-PEKNIITVEDPVEYQIPG-----INQVQVNE- 132 (264)
T ss_pred CHHHHHHHHHHHh-----cCCCEEEEECCCCCcHHHHHHHHHhhhCC-CCCeEEEECCCceecCCC-----ceEEEeCC-
Confidence 3445555555443 34568999999999999999999888742 233455553221100000 01111110
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEEecCccc
Q psy200 279 GKSERHQLGAILKYFDTKHKSILLILDEIDAL 310 (490)
Q Consensus 279 ~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l 310 (490)
.....+.+.+..++. ..|-+|+|+|+-.-
T Consensus 133 -~~~~~~~~~l~~~lR--~~PD~i~vgEiR~~ 161 (264)
T cd01129 133 -KAGLTFARGLRAILR--QDPDIIMVGEIRDA 161 (264)
T ss_pred -cCCcCHHHHHHHHhc--cCCCEEEeccCCCH
Confidence 111234445555554 34779999999774
No 400
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.14 E-value=0.0028 Score=59.31 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.+..++|+|+||+|||+++..++.+... .+..++|++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi~~e~ 57 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEG 57 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCC
Confidence 4567889999999999999999988742 345778887543
No 401
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.14 E-value=0.0041 Score=61.41 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhh-----cCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC----------CCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEI-----KDAFKTIYINCNSVRNAASVYETIVNELKLKPG----------GKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~-----~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~----------~~s~ 282 (490)
.+..+.|+|+||+|||+++..++-.... ..+-.++|++.-...++..+. +++..++.... -.+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 4567889999999999999887743321 123478999876644555443 34555543211 0123
Q ss_pred HHHHHHHHH---HHhcCCCeEEEEEecCccccc
Q psy200 283 RHQLGAILK---YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 283 ~~~~~~l~~---~l~~~~~~~vI~IDEid~l~~ 312 (490)
+...+.+.. .+.. .+..+||||-+..+..
T Consensus 174 e~~~~~l~~l~~~i~~-~~~~LvVIDSisal~r 205 (313)
T TIGR02238 174 EHQMELLDYLAAKFSE-EPFRLLIVDSIMALFR 205 (313)
T ss_pred HHHHHHHHHHHHHhhc-cCCCEEEEEcchHhhh
Confidence 333333332 2333 3567999999998754
No 402
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.14 E-value=0.00054 Score=68.16 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=52.4
Q ss_pred HHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC-CCCCCcHHH
Q psy200 206 IRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL-KPGGKSERH 284 (490)
Q Consensus 206 l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~-~~~~~s~~~ 284 (490)
+..+|..++. ..++++|+|++|+||||++++++..+. .+.+++.+.-........ ......-+.. ...+...-.
T Consensus 149 ~~~~L~~~v~--~~~nili~G~tgSGKTTll~aL~~~ip--~~~ri~tiEd~~El~l~~-~~n~~~~~~~~~~~~~~~~~ 223 (332)
T PRK13900 149 IKEFLEHAVI--SKKNIIISGGTSTGKTTFTNAALREIP--AIERLITVEDAREIVLSN-HPNRVHLLASKGGQGRAKVT 223 (332)
T ss_pred HHHHHHHHHH--cCCcEEEECCCCCCHHHHHHHHHhhCC--CCCeEEEecCCCcccccc-CCCEEEEEecCCCCCcCcCc
Confidence 4455555443 367899999999999999999999875 333444442111000000 0000000000 011112223
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCccc
Q psy200 285 QLGAILKYFDTKHKSILLILDEIDAL 310 (490)
Q Consensus 285 ~~~~l~~~l~~~~~~~vI~IDEid~l 310 (490)
+.+.+..++. .+|-.|++.|+-.-
T Consensus 224 ~~~ll~~~LR--~~PD~IivGEiR~~ 247 (332)
T PRK13900 224 TQDLIEACLR--LRPDRIIVGELRGA 247 (332)
T ss_pred HHHHHHHHhc--cCCCeEEEEecCCH
Confidence 4555555565 34779999999863
No 403
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.13 E-value=0.0015 Score=58.27 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=53.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC--HHHHHHHHHHHhcCCCCCCcHHHH-HHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN--AASVYETIVNELKLKPGGKSERHQ-LGAILKYF 293 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~--~~~l~~~i~~~l~~~~~~~s~~~~-~~~l~~~l 293 (490)
..+..+.|.|+.|+|||||++.++..+. +.-.-++++...... ...... ..++.... .+..+. +-.+..++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral 97 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARAL 97 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHH
Confidence 4677899999999999999999987654 222334554433221 111111 11111111 222222 22344444
Q ss_pred hcCCCeEEEEEecCccc-cccCHHHHHHhHh
Q psy200 294 DTKHKSILLILDEIDAL-ESRKQTILYTIFE 323 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l-~~~~~~~L~~l~~ 323 (490)
. ..|-+|++||--.- .......+..++.
T Consensus 98 ~--~~p~illlDEP~~~LD~~~~~~l~~~l~ 126 (163)
T cd03216 98 A--RNARLLILDEPTAALTPAEVERLFKVIR 126 (163)
T ss_pred h--cCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 4 34679999998654 3334555555553
No 404
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.12 E-value=0.0033 Score=66.24 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=58.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC----------------CCCc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP----------------GGKS 281 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~----------------~~~s 281 (490)
.+..++|.|+||+|||+++..++..... .+-+++|+...+ +..++.... ..++... ...+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCC
Confidence 5678999999999999999999887643 234667775433 555555543 3343211 1123
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCcccc
Q psy200 282 ERHQLGAILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 282 ~~~~~~~l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
.++....+.+.+.. .++.+|+||-+..+.
T Consensus 338 ~~~~~~~i~~~i~~-~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 338 LEDHLQIIKSEIAD-FKPARIAIDSLSALA 366 (484)
T ss_pred hHHHHHHHHHHHHH-cCCCEEEEcCHHHHH
Confidence 35566666666654 346699999999773
No 405
>PRK08233 hypothetical protein; Provisional
Probab=97.12 E-value=0.002 Score=58.20 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
...|.|.|++|+||||+++.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35788999999999999999999874
No 406
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.11 E-value=0.00086 Score=62.97 Aligned_cols=23 Identities=39% Similarity=0.797 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l 243 (490)
..+|.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999998888888877
No 407
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.11 E-value=0.0023 Score=67.47 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+.+..++|.|++|||||+|.|+++.-..
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 4678999999999999999999987654
No 408
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.10 E-value=0.0023 Score=59.51 Aligned_cols=23 Identities=26% Similarity=0.631 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhh
Q psy200 222 MYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l~ 244 (490)
|+|.|+||+||||+++.+++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998754
No 409
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00084 Score=58.19 Aligned_cols=43 Identities=26% Similarity=0.487 Sum_probs=34.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL 275 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~ 275 (490)
.+.|.|+||+||||+++.+++.++ ++++ +...+|++++.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g----l~~v--------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG----LKLV--------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC----Ccee--------eccHHHHHHHHHcCC
Confidence 467999999999999999999986 3322 456678888887765
No 410
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.09 E-value=0.0045 Score=56.04 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=56.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC--CHHHH------HHHHHHHhcCC------CCCCcH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR--NAASV------YETIVNELKLK------PGGKSE 282 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~--~~~~l------~~~i~~~l~~~------~~~~s~ 282 (490)
..+..+.|.|+.|+|||||++.++..+. +.---++++..... ....+ +.+++..++.. ....+.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4677899999999999999999987654 22233455543321 11111 11234444331 111222
Q ss_pred HHH-HHHHHHHHhcCCCeEEEEEecCcc-ccccCHHHHHHhHh
Q psy200 283 RHQ-LGAILKYFDTKHKSILLILDEIDA-LESRKQTILYTIFE 323 (490)
Q Consensus 283 ~~~-~~~l~~~l~~~~~~~vI~IDEid~-l~~~~~~~L~~l~~ 323 (490)
.+. +-.+..++. ..|-+|++||--. |.....+.+..++.
T Consensus 101 G~~qrl~laral~--~~p~llllDEP~~~LD~~~~~~~~~~l~ 141 (180)
T cd03214 101 GERQRVLLARALA--QEPPILLLDEPTSHLDIAHQIELLELLR 141 (180)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 222 223344444 3567999999875 44444555656554
No 411
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.08 E-value=0.0012 Score=56.29 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 200 EVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
.++..++.+.|...+ ..+..++|.|+.|+||||+++.+++.++.
T Consensus 5 ~~~t~~l~~~l~~~l--~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 5 EKAMDKFGKAFAKPL--DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHHhC--CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 345556666665543 34668999999999999999999999863
No 412
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.07 E-value=0.001 Score=65.25 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=49.4
Q ss_pred HHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHH
Q psy200 208 QFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQL 286 (490)
Q Consensus 208 ~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~ 286 (490)
.+|..++. ..++++|+|++|+||||+++++++.+... ++.+++.+.- ..++.-.--+.+.... ......+.
T Consensus 123 ~~L~~~v~--~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd-----~~El~~~~~~~v~~~~-~~~~~~~~ 194 (299)
T TIGR02782 123 DVLREAVL--ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED-----TRELQCAAPNVVQLRT-SDDAISMT 194 (299)
T ss_pred HHHHHHHH--cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC-----chhhcCCCCCEEEEEe-cCCCCCHH
Confidence 44444433 35689999999999999999999887531 2344444421 1111100000000000 01111444
Q ss_pred HHHHHHHhcCCCeEEEEEecCcc
Q psy200 287 GAILKYFDTKHKSILLILDEIDA 309 (490)
Q Consensus 287 ~~l~~~l~~~~~~~vI~IDEid~ 309 (490)
+.+..++. ..|-.|++.|+-.
T Consensus 195 ~~l~~aLR--~~pD~iivGEiR~ 215 (299)
T TIGR02782 195 RLLKATLR--LRPDRIIVGEVRG 215 (299)
T ss_pred HHHHHHhc--CCCCEEEEeccCC
Confidence 55555555 3467888888876
No 413
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.06 E-value=0.043 Score=54.72 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=82.3
Q ss_pred CeEEEEEecCcccccc---CHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCC---CHHH
Q psy200 298 KSILLILDEIDALESR---KQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPY---SREQ 371 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~---~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pl---s~~e 371 (490)
.+.+|+|++++.+... ..+.|..+++.. ....+++++.++..+-...+...+...+ ....|.++ ..++
T Consensus 61 ~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~--~~~~~li~~~~~~~d~r~k~~k~l~k~~----~~~~~~~~~~~~~~~ 134 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLI--PENTHLLLTNTKKPDGRLKSTKLLQKLA----EEKEFSLIPPWDTEG 134 (326)
T ss_pred CceEEEEeCchhhccCCHHHHHHHHHHHcCC--CCCcEEEEEeCCCcchHHHHHHHHHHce----eEEEecCCCcccHHH
Confidence 3457888887655322 234455555432 2233444433443332223333344332 25566544 5677
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHh
Q psy200 372 ILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 372 ~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
+..++..++... ...+++++++.++. ...+|+..+.+-++.....+...+ ..|+.++|...+...
T Consensus 135 l~~~i~~~~~~~--g~~i~~~a~~~L~~---~~g~dl~~l~~EleKL~ly~~~~~------~~It~~~V~~~v~~~ 199 (326)
T PRK07452 135 LKQLVERTAQEL--GVKLTPEAAELLAE---AVGNDSRRLYNELEKLALYAENST------KPISAEEVKALVSNT 199 (326)
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHH---HhCccHHHHHHHHHHHHHhccCCC------CccCHHHHHHHhccC
Confidence 999999999887 46699999999997 667899988888887765442222 368999998887653
No 414
>PF13479 AAA_24: AAA domain
Probab=97.06 E-value=0.0014 Score=61.17 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=44.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
+-.++|||+||+|||+++..+ + ..+++++-.-...-..+. ... ...-.+..++.+.+.........
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~-------~--k~l~id~E~g~~~~~~~~----~~~-~i~i~s~~~~~~~~~~l~~~~~~ 68 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL-------P--KPLFIDTENGSDSLKFLD----DGD-VIPITSWEDFLEALDELEEDEAD 68 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC-------C--CeEEEEeCCCccchhhhc----CCC-eeCcCCHHHHHHHHHHHHhccCC
Confidence 457899999999999999877 1 335555433211111110 000 00112566666666554333344
Q ss_pred eEEEEEecCcccc
Q psy200 299 SILLILDEIDALE 311 (490)
Q Consensus 299 ~~vI~IDEid~l~ 311 (490)
.-+||||-++.+.
T Consensus 69 y~tiVIDsis~~~ 81 (213)
T PF13479_consen 69 YDTIVIDSISWLE 81 (213)
T ss_pred CCEEEEECHHHHH
Confidence 5599999888863
No 415
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.06 E-value=0.0014 Score=60.34 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
+..++|+||.|+||||+++.++...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4789999999999999999998644
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.05 E-value=0.0063 Score=58.68 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+...+++|.|++|+||||+++.++..+.
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 3457899999999999999999998875
No 417
>KOG0479|consensus
Probab=97.05 E-value=0.043 Score=56.92 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=86.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhc----cC----CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN----NE----TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~----~~----~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
..+.|++-.++.|.-.|...+. ++ ..-+||++|.|.+-|+-|+++|++.... .+....-.+
T Consensus 301 PSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntApl-------AI~TTGRGS---- 369 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPL-------AIATTGRGS---- 369 (818)
T ss_pred cccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccc-------cccccCCCC----
Confidence 7899999998888777654322 11 2347999999999999999999886531 010000000
Q ss_pred HHHHHHHhcCCCCCCc--HHHHHHHHHHHHhcC----CCeEEEEEecCccccccCHHHHHHhHhCCC----------CCC
Q psy200 266 YETIVNELKLKPGGKS--ERHQLGAILKYFDTK----HKSILLILDEIDALESRKQTILYTIFEWPS----------IPG 329 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s--~~~~~~~l~~~l~~~----~~~~vI~IDEid~l~~~~~~~L~~l~~~~~----------~~~ 329 (490)
...|.+ ...-.+.=++.++.+ .-+-|+.|||||.|...+.-++...|+-.. .-+
T Consensus 370 ----------SGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLN 439 (818)
T KOG0479|consen 370 ----------SGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLN 439 (818)
T ss_pred ----------CCccceeEEeeccccchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhc
Confidence 000000 000000001112111 113399999999999888778877776432 136
Q ss_pred CcEEEEEecCCC----C----hhHh--hhHHhhhccCCCCeeEEeCCCCH
Q psy200 330 SKLVLVGVANAL----D----LTDR--MLPRLQANVTLQPTLMNFAPYSR 369 (490)
Q Consensus 330 ~~vilI~~tn~~----~----~~~~--l~~~l~~R~~~~~~~i~~~pls~ 369 (490)
.++-|++++|.. + -.+. +-..+.+||.+ ..+.++..+.
T Consensus 440 ARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDL--lFv~lD~~d~ 487 (818)
T KOG0479|consen 440 ARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDL--LFVVLDDIDA 487 (818)
T ss_pred cceeeeeecCccccccCCCCChhhccCCcHHHHhhhcE--EEEEeccccc
Confidence 788899998832 1 1111 12456677775 2344444443
No 418
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.04 E-value=0.0024 Score=56.81 Aligned_cols=119 Identities=19% Similarity=0.296 Sum_probs=59.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHH-HhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC-------CCCCcHH-HHHH--
Q psy200 219 SGSMYISGPPGTGKSASLNLLVS-RAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK-------PGGKSER-HQLG-- 287 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~-~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~-------~~~~s~~-~~~~-- 287 (490)
++.++|.||+|+|||+.+...+- .+.......++++ ++...-..+.+..+...+... ..+.... ....
T Consensus 14 ~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii-~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (169)
T PF00270_consen 14 GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLII-VPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL 92 (169)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEE-ESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH
T ss_pred CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEE-eecccccccccccccccccccccccccccccccccccccccc
Confidence 46799999999999999984443 3432222244444 332222333344443333221 1112211 1111
Q ss_pred ------------HHHHHHhc----CCCeEEEEEecCccccccCH-HHHHHhHhCC-CCCCCcEEEEEec
Q psy200 288 ------------AILKYFDT----KHKSILLILDEIDALESRKQ-TILYTIFEWP-SIPGSKLVLVGVA 338 (490)
Q Consensus 288 ------------~l~~~l~~----~~~~~vI~IDEid~l~~~~~-~~L~~l~~~~-~~~~~~vilI~~t 338 (490)
.|...+.. -.+..+|||||+|.+..... ..+..++... ...+.+++++.+|
T Consensus 93 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT 161 (169)
T PF00270_consen 93 SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSAT 161 (169)
T ss_dssp HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESS
T ss_pred cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeC
Confidence 12222322 12366999999999987532 2333333322 2224566665555
No 419
>PF13245 AAA_19: Part of AAA domain
Probab=97.04 E-value=0.00075 Score=51.71 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=17.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+.++|.||||+|||+++-.++.++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5567789999999995444444444
No 420
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.04 E-value=0.031 Score=56.14 Aligned_cols=193 Identities=12% Similarity=0.126 Sum_probs=111.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcC--CceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKD--AFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD 294 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~--~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~ 294 (490)
+..+..+|||+-.-.....++.+.+.+.... +|.+..+.+.... ....++.+.+...--
T Consensus 18 ~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~-------------------~~~~~~~~~~~t~sl 78 (343)
T PRK06585 18 PKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLD-------------------ADPARLEDEANAISL 78 (343)
T ss_pred CCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhh-------------------cCHHHHHHHHhCCCC
Confidence 3567899999998777777777776653211 2443433322110 001122221111100
Q ss_pred cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 295 TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
-+.+.+|+|.+.+. ...+.|..++... ....++++. ....+-...+...+. .... ...+.+.+++..++..
T Consensus 79 -F~~~rlViv~~~~~---~~~~~L~~~l~~~--~~~~~lil~-~~~~~~~~kl~k~~~-~~~~-~~~v~~~~~~~~~l~~ 149 (343)
T PRK06585 79 -FGGRRLIWVRAGSK---NLAAALKALLESP--PGDAFIVIE-AGDLKKGSSLRKLFE-TAAY-AAAIPCYADDERDLAR 149 (343)
T ss_pred -CCCceEEEEECCch---hHHHHHHHHHcCC--CCCcEEEEE-cCCCCcccHHHHHHh-cCCC-eeEEecCCCCHHHHHH
Confidence 12344777775432 2234555555433 233444443 333322222222221 1111 1367888999999999
Q ss_pred HHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 375 IISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 375 il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
++..++... ...+++++++.+++ ...||+..+.+-++.....+... ..||.++|...+.....
T Consensus 150 ~i~~~~~~~--g~~i~~~a~~~L~~---~~g~dl~~l~~EleKL~ly~~~~-------~~It~edV~~lv~~~~e 212 (343)
T PRK06585 150 LIDDELAEA--GLRITPDARALLVA---LLGGDRLASRNEIEKLALYAHGK-------GEITLDDVRAVVGDASA 212 (343)
T ss_pred HHHHHHHHC--CCCCCHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcCCC-------CCCCHHHHHHHhCCccc
Confidence 999999987 46689999999998 67789998888888777654332 36888888887766543
No 421
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.03 E-value=0.0085 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhh
Q psy200 222 MYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l~ 244 (490)
|+|+|+||+||||+++.+++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998854
No 422
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=97.02 E-value=0.0016 Score=64.29 Aligned_cols=120 Identities=20% Similarity=0.270 Sum_probs=68.6
Q ss_pred ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHH---HHh-------------c----
Q psy200 215 NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIV---NEL-------------K---- 274 (490)
Q Consensus 215 ~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~---~~l-------------~---- 274 (490)
....+..++|-|.||||||+++-.+.+.+.. +..++|++.-. +...++.... ..+ .
T Consensus 6 ~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~--~~~v~YISTRV--d~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~~~ 81 (484)
T PF07088_consen 6 TQEPGQTLLIKGEPGTGKTTFALELLNSLKD--HGNVMYISTRV--DQDTVYEMYPWIEESIDPTNVLDATQDPFELPLD 81 (484)
T ss_pred cCCCCcEEEEecCCCCCceeeehhhHHHHhc--cCCeEEEEecc--CHHHHHHhhhhhccccChhhhhhhccchhhcccc
Confidence 4577899999999999999999999999863 33445654332 2222322211 111 0
Q ss_pred --CCCCCCcHHHHHHHHHHHHhcCCCeEEEEEec----Ccccccc---CHH---HHHHhHhCCCCCCCcEEEEEecC
Q psy200 275 --LKPGGKSERHQLGAILKYFDTKHKSILLILDE----IDALESR---KQT---ILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 275 --~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDE----id~l~~~---~~~---~L~~l~~~~~~~~~~vilI~~tn 339 (490)
.+......+.+.+++.+. ...+++.+|+||- ++.+... .++ ...++..+....+.++++|.-+.
T Consensus 82 ~~vp~~~l~~ds~~~f~~~i-~~~~k~~iI~~DSWdaiieyla~~~~~~ed~e~l~~dLv~lard~g~~LIlVsEsa 157 (484)
T PF07088_consen 82 KDVPFERLDIDSFRDFVDKI-NEAGKKPIIAFDSWDAIIEYLAEEHDEPEDIETLTNDLVELARDMGINLILVSESA 157 (484)
T ss_pred ccCcccccCHHHHHHHHHHh-hhcccCcEEEEecHHHHHHHhhhhhcCcHHHHHHHHHHHHHHhhcCceEEEEEecC
Confidence 012223456666666643 3346677999999 5555422 122 12233333344567777775443
No 423
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.02 E-value=0.0042 Score=59.45 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=25.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
.|+|+|.||+||||+++.+++.+.. .++.++.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~-~~~~v~~i 33 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE-KNIDVIIL 33 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-cCCceEEE
Confidence 3789999999999999999998752 23445555
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.01 E-value=0.00084 Score=62.09 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~ 241 (490)
.+..++|+||.|+||||+++.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 346899999999999999999984
No 425
>PRK04040 adenylate kinase; Provisional
Probab=97.01 E-value=0.0028 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..++|+|.||+||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999999873
No 426
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.003 Score=55.81 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=53.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC--HHHHHHHHHHHhcCCCCCCcHHH-HHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN--AASVYETIVNELKLKPGGKSERH-QLGAILKYF 293 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~--~~~l~~~i~~~l~~~~~~~s~~~-~~~~l~~~l 293 (490)
.++..+.|.|+.|+||||+++.++..+. .....++++...... ...+ ...+..... .+..+ .+-.+..++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l 95 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARAL 95 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHH
Confidence 3567899999999999999999987654 222334555433221 1111 111111100 12222 222344444
Q ss_pred hcCCCeEEEEEecCcccc-ccCHHHHHHhHh
Q psy200 294 DTKHKSILLILDEIDALE-SRKQTILYTIFE 323 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l~-~~~~~~L~~l~~ 323 (490)
. ..+-++++||...=. ......+..++.
T Consensus 96 ~--~~~~i~ilDEp~~~lD~~~~~~l~~~l~ 124 (157)
T cd00267 96 L--LNPDLLLLDEPTSGLDPASRERLLELLR 124 (157)
T ss_pred h--cCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 4 336699999997543 334455555544
No 427
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.01 E-value=0.0055 Score=72.60 Aligned_cols=109 Identities=13% Similarity=0.217 Sum_probs=60.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhh---cCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH-
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEI---KDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKY- 292 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~---~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~- 292 (490)
...+.++|.|.+||||||+++.+...+.. ..++.++-+ .. +... ...+ .+. |.....+..+|...
T Consensus 982 s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~gl--AP--TgrA-Ak~L-~e~-----Gi~A~TI~s~L~~~~ 1050 (1747)
T PRK13709 982 STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGL--GP--THRA-VGEM-RSA-----GVDAQTLASFLHDTQ 1050 (1747)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEE--CC--cHHH-HHHH-Hhc-----CcchhhHHHHhcccc
Confidence 34579999999999999999999887642 123333332 21 1111 1111 111 22223333333211
Q ss_pred -H-hc----CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 293 -F-DT----KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 293 -l-~~----~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
. .. .....||||||+-.+...... .++......+.++|+||-.+
T Consensus 1051 ~~~~~~~~~~~~~~llIVDEaSMv~~~~m~---~Ll~~~~~~garvVLVGD~~ 1100 (1747)
T PRK13709 1051 LQQRSGETPDFSNTLFLLDESSMVGNTDMA---RAYALIAAGGGRAVSSGDTD 1100 (1747)
T ss_pred cccccccCCCCCCcEEEEEccccccHHHHH---HHHHhhhcCCCEEEEecchH
Confidence 0 00 123469999999998754433 34433333467899998664
No 428
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.00 E-value=0.0029 Score=58.15 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=55.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
...++|.|+-|+|||+.++.+....- .+.... ...++....+..
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~~~---------~d~~~~--------------------~~~kd~~~~l~~------- 95 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPEYF---------SDSIND--------------------FDDKDFLEQLQG------- 95 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHHhc---------cCcccc--------------------CCCcHHHHHHHH-------
Confidence 35778999999999999999854421 110000 011122222221
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCC------------CCCCcEEEEEecCCCCh
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPS------------IPGSKLVLVGVANALDL 343 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~------------~~~~~vilI~~tn~~~~ 343 (490)
..||.|||++.+.....+.|..++.... ...-..++||+||..++
T Consensus 96 ~~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~ 152 (198)
T PF05272_consen 96 KWIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDF 152 (198)
T ss_pred hHheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcce
Confidence 3599999999999778888887764221 12345688999997654
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.00 E-value=0.0011 Score=62.20 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~ 241 (490)
.+..++|+||.|.|||++++.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999987
No 430
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.99 E-value=0.0059 Score=60.65 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=56.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-----CCceEEEEeccCCCCHHHHHHHHHHHhcCCCC----------CCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-----DAFKTIYINCNSVRNAASVYETIVNELKLKPG----------GKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~----------~~s~ 282 (490)
.+..+.|+|+||+|||+++..++...... .+..++|+++....+...+. +++..++.... ..+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCH
Confidence 46678899999999999999998765321 12478999876644444433 33333332110 0111
Q ss_pred H---HHHHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 283 R---HQLGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 283 ~---~~~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
. .+...+...+....+..+||||-+-.+..
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~ 212 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTAHFR 212 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchHHhh
Confidence 1 22333334343324567999999988753
No 431
>PRK14529 adenylate kinase; Provisional
Probab=96.99 E-value=0.0067 Score=56.71 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999999999875
No 432
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.99 E-value=0.00056 Score=64.61 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy200 222 MYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~ 242 (490)
++|.|+||+|||++++.++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999887
No 433
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.98 E-value=0.0027 Score=62.72 Aligned_cols=37 Identities=32% Similarity=0.507 Sum_probs=28.9
Q ss_pred HHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 206 IRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 206 l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..+|...+ ....+++|+|++|+||||++++++..+.
T Consensus 133 ~~~~l~~~v--~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 133 IKEFLRLAI--ASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHHHHHh--hCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 445555443 3467999999999999999999998875
No 434
>PTZ00035 Rad51 protein; Provisional
Probab=96.97 E-value=0.0072 Score=60.34 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=55.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-----CCceEEEEeccCCCCHHHHHHHHHHHhcCCC----------CCCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-----DAFKTIYINCNSVRNAASVYETIVNELKLKP----------GGKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~----------~~~s~ 282 (490)
.+..+.|+|++|+|||+++..++-..... .+-.++|++......+.. +..++..++... .-.+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCH
Confidence 45678899999999999999887654311 234678888765434443 333344433211 01123
Q ss_pred HHHHHHHHH---HHhcCCCeEEEEEecCccccc
Q psy200 283 RHQLGAILK---YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 283 ~~~~~~l~~---~l~~~~~~~vI~IDEid~l~~ 312 (490)
++..+.+.. .+.. .+..+||||-+-.++.
T Consensus 196 e~~~~~l~~~~~~l~~-~~~~lvVIDSital~r 227 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAE-ERFALLIVDSATALFR 227 (337)
T ss_pred HHHHHHHHHHHHHhhc-cCccEEEEECcHHhhh
Confidence 333343332 2222 4577999999998754
No 435
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.97 E-value=0.0066 Score=60.13 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=55.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-----CCceEEEEeccCCCCHHHHHHHHHHHhcCCCC----------CCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-----DAFKTIYINCNSVRNAASVYETIVNELKLKPG----------GKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~----------~~s~ 282 (490)
.+..+.|+|+||+|||+++..++...... .+-.++|++.....+...+. +++..++.... -...
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence 45678899999999999999998775321 12278999876654555443 33333332110 0111
Q ss_pred H---HHHHHHHHHHhcCC-CeEEEEEecCccccc
Q psy200 283 R---HQLGAILKYFDTKH-KSILLILDEIDALES 312 (490)
Q Consensus 283 ~---~~~~~l~~~l~~~~-~~~vI~IDEid~l~~ 312 (490)
. .+.+.+.+.+.... ...+||||-+-.+..
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r 206 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFR 206 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecchHhhh
Confidence 1 12333444444332 356999998887643
No 436
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.97 E-value=0.0097 Score=59.35 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=56.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhh-----cCCceEEEEeccCCCCHHHHHHHHHHHhcCCC----------CCCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEI-----KDAFKTIYINCNSVRNAASVYETIVNELKLKP----------GGKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~-----~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~----------~~~s~ 282 (490)
.+....|+|++|+|||+++..++-.... ..+-.++|++.-....+..+.. ++..++... .-.+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 4567779999999999999988754321 1134789998766555555433 444444321 01233
Q ss_pred HHHHHHHHH---HHhcCCCeEEEEEecCccccc
Q psy200 283 RHQLGAILK---YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 283 ~~~~~~l~~---~l~~~~~~~vI~IDEid~l~~ 312 (490)
+.....+.. .+.. .+..+||||-+-.+..
T Consensus 204 e~~~~~l~~l~~~i~~-~~~~LvVIDSital~r 235 (344)
T PLN03187 204 EHQYNLLLGLAAKMAE-EPFRLLIVDSVIALFR 235 (344)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCcHHhhh
Confidence 333333332 3332 3467999999988754
No 437
>PRK06696 uridine kinase; Validated
Probab=96.94 E-value=0.0026 Score=59.74 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
|++.+++|.+.+... ..+.+..|.|.|++|+||||+++.|++.+... +..++.++...+
T Consensus 3 ~~~~~~~la~~~~~~-~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~-g~~v~~~~~Ddf 61 (223)
T PRK06696 3 RKQLIKELAEHILTL-NLTRPLRVAIDGITASGKTTFADELAEEIKKR-GRPVIRASIDDF 61 (223)
T ss_pred HHHHHHHHHHHHHHh-CCCCceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeccccc
Confidence 567777777777542 23456688899999999999999999998522 345555443333
No 438
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.017 Score=55.59 Aligned_cols=148 Identities=9% Similarity=0.133 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHhc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKLKPG-GKSERHQLGAILKYFDT 295 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~~~-~~s~~~~~~~l~~~l~~ 295 (490)
++..++|+|++|+||||+++.++..+.. ....+..+++.... ....-|......++.+.. ..+...+.+.+... ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~-~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF-KE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHH-Hh
Confidence 4478999999999999999999888742 23455566655443 122223444444443322 13455555555443 32
Q ss_pred CCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHH
Q psy200 296 KHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQ 371 (490)
Q Consensus 296 ~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e 371 (490)
..+.-+||||......... .+.|..++.... ....++++.++...+....+...+.. +....+-|..++...
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~-~~~~~LVl~a~~~~~d~~~~~~~f~~---~~~~~~I~TKlDet~ 225 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVE-PDYICLTLSASMKSKDMIEIITNFKD---IHIDGIVFTKFDETA 225 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhC-CCeEEEEEcCccCHHHHHHHHHHhCC---CCCCEEEEEeecCCC
Confidence 2345699999998875432 233334433221 22223344333221111222333332 233467777777554
No 439
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.93 E-value=0.047 Score=51.46 Aligned_cols=29 Identities=31% Similarity=0.483 Sum_probs=25.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
+.+..+.|.|++|+|||||++.++..+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45567889999999999999999998863
No 440
>PLN02200 adenylate kinase family protein
Probab=96.91 E-value=0.011 Score=55.87 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|.|+||+||||+++.+++.++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998864
No 441
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.91 E-value=0.0034 Score=65.51 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=54.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCceEEEEeccCCC-CHHHHHHHHHHHhcCCCCCCc------HHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEI-KDAFKTIYINCNSVR-NAASVYETIVNELKLKPGGKS------ERHQLGA 288 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~~~~~s------~~~~~~~ 288 (490)
+.+.-.+|+||||+|||+|++.|++.+.. ..++.++++-+..-. ...+|...+-.++-....... ...+.-.
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 56778999999999999999999997742 344554444333322 122232222111111111111 1122223
Q ss_pred HHHHHhcCCCeEEEEEecCcccc
Q psy200 289 ILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 289 l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
+.++|...++.+|||+|.+-.+.
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHHH
Confidence 44555556889999999998764
No 442
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.90 E-value=0.0067 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~ 241 (490)
..+..+.|.||.|+|||||++.++.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4567889999999999999999863
No 443
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0076 Score=54.40 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++|.|+||+||||+|+.+++.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999853
No 444
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.87 E-value=0.012 Score=60.96 Aligned_cols=53 Identities=11% Similarity=0.267 Sum_probs=38.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
++..++|.|.||+|||+++..++..+....+..+++++.- + +..++...++..
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE-m-~~~~l~~Rl~~~ 245 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE-M-SAEQLGERLLAS 245 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC-C-CHHHHHHHHHHH
Confidence 4568889999999999999999977653445677777532 2 556666555543
No 445
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.87 E-value=0.0012 Score=59.25 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|+|++|+||||+++.+++.++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999875
No 446
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.87 E-value=0.031 Score=55.61 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=28.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 222 MYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
++|+|.+|+||||+++.+++.+....++.+..++.-.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 5789999999999999999888644455555554433
No 447
>PRK06547 hypothetical protein; Provisional
Probab=96.86 E-value=0.0017 Score=58.40 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=25.8
Q ss_pred ccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 215 NNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 215 ~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.......|+|.|++|+||||+++.+++.++
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346677888999999999999999998764
No 448
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.86 E-value=0.011 Score=51.75 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=25.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 222 MYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
++|+|.+|+||||+++.++..+. ......++++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~-~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF-QRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEEc
Confidence 78999999999999999999874 2223445553
No 449
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0093 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|.||.|.|||||++.++.-+.
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 457888999999999999999988553
No 450
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.85 E-value=0.0078 Score=70.50 Aligned_cols=109 Identities=13% Similarity=0.230 Sum_probs=59.9
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhh---cCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH-
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEI---KDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKY- 292 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~---~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~- 292 (490)
...+.++|.|.+||||||+++.+...+.. ..++.++-+ ++ +... ...| .+. |.....+..+|...
T Consensus 850 s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~gl-AP---TgkA-a~~L-~e~-----Gi~A~TIasfL~~~~ 918 (1623)
T PRK14712 850 TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGL-GP---THRA-VGEM-RSA-----GVDAQTLASFLHDTQ 918 (1623)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEE-ec---hHHH-HHHH-HHh-----CchHhhHHHHhcccc
Confidence 34578999999999999999888776531 223333333 11 1111 1111 111 12222233333211
Q ss_pred ----Hhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 293 ----FDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 293 ----l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
... .....||||||+-.+.......|+.++. ..+.++++||-+.
T Consensus 919 ~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~---~~garvVLVGD~~ 968 (1623)
T PRK14712 919 LQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIA---AGGGRAVASGDTD 968 (1623)
T ss_pred chhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhh---hCCCEEEEEcchh
Confidence 000 1234699999999987654444444433 3467999998664
No 451
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.84 E-value=0.0038 Score=58.01 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=58.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC-CCHHHHHHHHHHHhcC-------CCCCCc-HHHH--
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV-RNAASVYETIVNELKL-------KPGGKS-ERHQ-- 285 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~-~~~~~l~~~i~~~l~~-------~~~~~s-~~~~-- 285 (490)
..+..++|.|++|+|||+|+..+++... .+ .++++-|..- ....++++++...-.. ...... ....
T Consensus 13 g~Gqr~~I~g~~g~GKt~Ll~~i~~~~~--~d-~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 13 GRGQRIGIFGGAGVGKTVLLQEIANNQD--AD-VVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHCT--TT-EEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred ccCCEEEEEcCcccccchhhHHHHhccc--cc-ceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 4678999999999999999999999874 22 3366666543 2344555555433100 011111 1111
Q ss_pred ---HHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 286 ---LGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 286 ---~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
.-.+.+++...++.++||+|++-++...
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A 120 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTRWAQA 120 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHHHHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHHHHHH
Confidence 1234455666789999999999887643
No 452
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.84 E-value=0.00087 Score=57.99 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++++|+||+||||+++.++..++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 378999999999999999998764
No 453
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.84 E-value=0.011 Score=62.82 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC---------------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK--------------------- 276 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~--------------------- 276 (490)
.+..++|+|+||+|||+++..++.+.....+-.++|++... +..++...+.. ++..
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee--~~~~i~~~~~~-~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE--SPEDIIRNVAS-FGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC--CHHHHHHHHHH-cCCCHHHHhhCCeEEEEecCccccc
Confidence 56789999999999999999987654433245677886554 44554443321 2210
Q ss_pred ---CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccc
Q psy200 277 ---PGGKSERHQLGAILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 277 ---~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
......+.+...+.+++.. .++..|+||-+..+.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~-~~~~~vVIDSls~l~ 143 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDK-IGAKRVVLDSIEALF 143 (509)
T ss_pred ccccccccHHHHHHHHHHHHHh-hCCCEEEECCHHHHH
Confidence 0001234455555555544 345689999998764
No 454
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.84 E-value=0.056 Score=53.56 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=26.4
Q ss_pred HHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 208 QFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 208 ~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
++|..++. ..++++|+|++|+||||++++++..+
T Consensus 139 ~~L~~~v~--~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 139 EAIIAAVR--AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHH--cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 44444333 35789999999999999999998764
No 455
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=96.84 E-value=0.0048 Score=62.36 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=25.3
Q ss_pred EEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEec
Q psy200 300 ILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 300 ~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
.+|||||+|.+.......+..++......+.+++++.+|
T Consensus 126 ~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SAT 164 (358)
T TIGR01587 126 SLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSAT 164 (358)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 489999999998654444444443322345677777776
No 456
>PRK09694 helicase Cas3; Provisional
Probab=96.83 E-value=0.0033 Score=70.06 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=31.3
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
..+|||||+|.+.......|..++++....+.++|++.+|=
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATL 480 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATL 480 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 44999999999987666677777777555567788877773
No 457
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.83 E-value=0.0077 Score=52.40 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=49.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHH-HHHHHHHHHhc
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERH-QLGAILKYFDT 295 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~-~~~~l~~~l~~ 295 (490)
..+..+.|.|+.|+|||||++.++..+... -.-++++... .+..... .+..+ -+-.+..++.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~- 86 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLL- 86 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHh-
Confidence 456788999999999999999998765421 1223332110 0000000 12222 2223344444
Q ss_pred CCCeEEEEEecCccc-cccCHHHHHHhHh
Q psy200 296 KHKSILLILDEIDAL-ESRKQTILYTIFE 323 (490)
Q Consensus 296 ~~~~~vI~IDEid~l-~~~~~~~L~~l~~ 323 (490)
.++-++++||--.- .......+..++.
T Consensus 87 -~~p~illlDEP~~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 87 -ENPNLLLLDEPTNHLDLESIEALEEALK 114 (144)
T ss_pred -cCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 35679999998754 3334555655554
No 458
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.82 E-value=0.0018 Score=59.85 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLV 240 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~ 240 (490)
+.++|+||.|+||||+++.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999988
No 459
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.81 E-value=0.0074 Score=73.20 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH-------HH
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI-------VN 271 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i-------~~ 271 (490)
-+++.+.+..++. ...+.++|.|++|||||++++.+.+.+. ..++.++-+ ++.......+-..+ ..
T Consensus 431 s~~Q~~Av~~il~-----s~~~v~ii~G~aGTGKTt~l~~l~~~~~-~~G~~V~~l-APTgrAA~~L~e~~g~~A~Ti~~ 503 (1960)
T TIGR02760 431 SPSNKDAVSTLFT-----STKRFIIINGFGGTGSTEIAQLLLHLAS-EQGYEIQII-TAGSLSAQELRQKIPRLASTFIT 503 (1960)
T ss_pred CHHHHHHHHHHHh-----CCCCeEEEEECCCCCHHHHHHHHHHHHH-hcCCeEEEE-eCCHHHHHHHHHHhcchhhhHHH
Confidence 3455555555553 4568999999999999999999988764 234444433 22221222222111 11
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 272 ELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 272 ~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
-+.....+.....+..++.. -......-||||||+..+... .+..|++.....+.++++||-+.
T Consensus 504 ~l~~l~~~~~~~tv~~fl~~-~~~l~~~~vlIVDEAsMl~~~---~~~~Ll~~a~~~garvVlvGD~~ 567 (1960)
T TIGR02760 504 WVKNLFNDDQDHTVQGLLDK-SSPFSNKDIFVVDEANKLSNN---ELLKLIDKAEQHNSKLILLNDSA 567 (1960)
T ss_pred HHHhhcccccchhHHHhhcc-cCCCCCCCEEEEECCCCCCHH---HHHHHHHHHhhcCCEEEEEcChh
Confidence 11100111111111111110 000023459999999998654 34455544434678999997664
No 460
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.80 E-value=0.0086 Score=54.09 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|+.|+|||||++.++..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3577899999999999999999988754
No 461
>PTZ00293 thymidine kinase; Provisional
Probab=96.79 E-value=0.001 Score=61.15 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCcHHH-HHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSA-SLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTt-la~~l~~~l~ 244 (490)
+..-+++||.|+|||+ |++.+.+...
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ 30 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTY 30 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHH
Confidence 4577899999999999 9998876654
No 462
>KOG3928|consensus
Probab=96.79 E-value=0.058 Score=53.86 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
..+..|+...+-+. ..+..-...+..-++|+|++|||||-++..+.+... ..++-++.+
T Consensus 155 a~lLVRkpalel~~-~~r~~d~~~P~~r~vL~Ge~GtGKSiaL~qa~h~a~-~~~wlIlhi 213 (461)
T KOG3928|consen 155 AVLLVRKPALELLL-YKRLVDPMHPVKRFVLDGEPGTGKSIALAQAVHYAA-DQKWLILHI 213 (461)
T ss_pred chheechHHHHHHH-HhhhccccCcceEEEEeCCCCCchhhHHHHHHHHHh-cCCeEEEEC
Confidence 45667777765433 333221234667899999999999988777766553 335555554
No 463
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.79 E-value=0.001 Score=56.19 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy200 222 MYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l 243 (490)
|+|.|++|+||||+++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 464
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.79 E-value=0.0078 Score=54.11 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|+.|+|||||++.++..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4567899999999999999999988754
No 465
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.78 E-value=0.0014 Score=59.66 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q psy200 222 MYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~ 241 (490)
++|+|+.|.||||+++.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999984
No 466
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.78 E-value=0.016 Score=60.26 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=36.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
++..++|.|.||+|||+++..++..+....+..+++++.-. +..++...++.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm--~~~~i~~R~~~ 245 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEM--SAEQLAMRMLS 245 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcC--CHHHHHHHHHH
Confidence 45578899999999999999998876544455666664332 45555544443
No 467
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.77 E-value=0.0049 Score=58.00 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++|.|+||+||||+++.+++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999864
No 468
>PLN02459 probable adenylate kinase
Probab=96.75 E-value=0.0049 Score=58.75 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=47.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-----CHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-----NAASVYETIVNELKLKPGGKSERHQLGAILK 291 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-----~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~ 291 (490)
+.+..++|.|+||+||+|++..+++.++ +.++++..+. ....+-..+-..+. ...-...+-+...+.+
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~------~~~is~gdllR~ei~~~t~lg~~i~~~~~-~G~lVPdeiv~~ll~~ 99 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLG------VPHIATGDLVREEIKSSGPLGAQLKEIVN-QGKLVPDEIIFSLLSK 99 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhC------CcEEeCcHHHHHHHhccchhHHHHHHHHH-cCCccCHHHHHHHHHH
Confidence 3344688899999999999999998864 3444433321 00011111111111 1111233444555666
Q ss_pred HHhcC--CCeEEEEEecCcccc
Q psy200 292 YFDTK--HKSILLILDEIDALE 311 (490)
Q Consensus 292 ~l~~~--~~~~vI~IDEid~l~ 311 (490)
.+... ....-+|||-+.+-.
T Consensus 100 ~l~~~~~~~~~g~iLDGFPRt~ 121 (261)
T PLN02459 100 RLEAGEEEGESGFILDGFPRTV 121 (261)
T ss_pred HHhcccccCCceEEEeCCCCCH
Confidence 55432 123468899988853
No 469
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.75 E-value=0.0054 Score=55.87 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..++|+||+|+|||+|++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998864
No 470
>PRK10646 ADP-binding protein; Provisional
Probab=96.75 E-value=0.0091 Score=52.12 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
.+++..++.+.|...+ ..+..++|.|.=|+||||+++.+++.++.
T Consensus 10 s~~~t~~l~~~la~~l--~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 10 DEQATLDLGARVAKAC--DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CHHHHHHHHHHHHHhC--CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456667777776644 33568999999999999999999999974
No 471
>KOG0058|consensus
Probab=96.75 E-value=0.0097 Score=63.43 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++..+.|+||.|.||||++..+.+-+.
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4677899999999999999998877654
No 472
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.74 E-value=0.012 Score=56.59 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=55.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC-CCHHHHHHHHHHHhcC-------CCCCC-cHHH---
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV-RNAASVYETIVNELKL-------KPGGK-SERH--- 284 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~-~~~~~l~~~i~~~l~~-------~~~~~-s~~~--- 284 (490)
..++.++|.|++|+|||+|+..+++.........++++-+..- ....++++++...=.. ..... ....
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 5678999999999999999999998876332223444444332 2334555555432110 00111 1111
Q ss_pred --HHHHHHHHHhcC-CCeEEEEEecCccccc
Q psy200 285 --QLGAILKYFDTK-HKSILLILDEIDALES 312 (490)
Q Consensus 285 --~~~~l~~~l~~~-~~~~vI~IDEid~l~~ 312 (490)
..-.+.+++... ++.++|++|++-+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 112344555544 7888999998777653
No 473
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.74 E-value=0.002 Score=59.64 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.+..++|+||.|+|||++++.++..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999998644
No 474
>PRK03839 putative kinase; Provisional
Probab=96.73 E-value=0.0015 Score=59.08 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|.|+||+||||+++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.72 E-value=0.012 Score=61.92 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVY 266 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~ 266 (490)
.+..++|+|+||+|||+++..++.+-....+-..+|+.... +..++.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE--~~~~l~ 66 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE--SPQDII 66 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CHHHHH
Confidence 57789999999999999999986653222234667776542 444443
No 476
>KOG1808|consensus
Probab=96.72 E-value=0.003 Score=73.99 Aligned_cols=148 Identities=16% Similarity=0.215 Sum_probs=98.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
...++|-||.|+|||.++..++...+ ..++.++.....+..+++......-.+. ....+ ..+..++..
T Consensus 440 ~~pillqG~tssGKtsii~~la~~~g----~~~vrinnhehtd~qeyig~y~~~~~g~---l~fre--g~LV~Alr~--- 507 (1856)
T KOG1808|consen 440 KFPILLQGPTSSGKTSIIKELARATG----KNIVRINNHEHTDLQEYIGTYVADDNGD---LVFRE--GVLVQALRN--- 507 (1856)
T ss_pred CCCeEEecCcCcCchhHHHHHHHHhc----cCceehhccccchHHHHHHhhhcCCCCC---eeeeh--hHHHHHHHh---
Confidence 45899999999999999999999875 6788898888777666665333222211 11111 123333332
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCC---C--------CCCcEEEEEecCCCC---hhHhhhHHhhhccCCCCeeEEe
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPS---I--------PGSKLVLVGVANALD---LTDRMLPRLQANVTLQPTLMNF 364 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~---~--------~~~~vilI~~tn~~~---~~~~l~~~l~~R~~~~~~~i~~ 364 (490)
-+.+|+||+........++|.+++++.. + .+..+.+.++-|... -...+.+.++.||. .++|
T Consensus 508 G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~----e~~f 583 (1856)
T KOG1808|consen 508 GDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFI----ELHF 583 (1856)
T ss_pred CCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccch----hhhh
Confidence 3599999999998888888888877621 1 233344444444332 12334567777875 7899
Q ss_pred CCCCHHHHHHHHHHHHhc
Q psy200 365 APYSREQILEIISQKLKQ 382 (490)
Q Consensus 365 ~pls~~e~~~il~~~l~~ 382 (490)
..+..+++..++.+++..
T Consensus 584 ~~~~e~e~~~i~~~~~~i 601 (1856)
T KOG1808|consen 584 DDIGEEELEEILEHRCGI 601 (1856)
T ss_pred hhcCchhhhhhhcccccC
Confidence 999999999888877654
No 477
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.71 E-value=0.002 Score=56.55 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=19.3
Q ss_pred EECCCCCcHHHHHHHHHHHhh
Q psy200 224 ISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 224 l~GppGtGKTtla~~l~~~l~ 244 (490)
|.||||+||||+++.+++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999999864
No 478
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.71 E-value=0.0036 Score=64.21 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=58.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+.+..-....+.+..++. .+.+.+|++||.|+||||++.++.+++.... ..++.+. ++-++...=+.++
T Consensus 238 ~~Lg~~~~~~~~~~~~~~-----~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~-~nI~TiE-----DPVE~~~~gI~Q~ 306 (500)
T COG2804 238 EKLGMSPFQLARLLRLLN-----RPQGLILVTGPTGSGKTTTLYAALSELNTPE-RNIITIE-----DPVEYQLPGINQV 306 (500)
T ss_pred HHhCCCHHHHHHHHHHHh-----CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCC-ceEEEee-----CCeeeecCCccee
Confidence 445555555666666664 5678899999999999999999999986222 2233332 1111100000111
Q ss_pred cC-CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 274 KL-KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 274 ~~-~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
.. +..|.+... .+...+. ..|-||+|.||-.....
T Consensus 307 qVN~k~gltfa~---~LRa~LR--qDPDvImVGEIRD~ETA 342 (500)
T COG2804 307 QVNPKIGLTFAR---ALRAILR--QDPDVIMVGEIRDLETA 342 (500)
T ss_pred ecccccCCCHHH---HHHHHhc--cCCCeEEEeccCCHHHH
Confidence 11 122333333 3344444 34789999999886543
No 479
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.71 E-value=0.078 Score=54.46 Aligned_cols=96 Identities=16% Similarity=0.231 Sum_probs=57.1
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc--------CCCCCCcHHHH--
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK--------LKPGGKSERHQ-- 285 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~--------~~~~~~s~~~~-- 285 (490)
-..+..+.|.|++|+|||++++.++.... .+..++.+.........+++......=. ..........+
T Consensus 152 i~~GqrigI~G~sG~GKSTLL~~I~~~~~--~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 152 CGEGQRVGIFSAPGVGKSTLLAMLCNAPD--ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred cCCCCEEEEECCCCCCccHHHHHhcCCCC--CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 35678999999999999999999987653 3333333333333344455555432100 01111111222
Q ss_pred ---HHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 286 ---LGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 286 ---~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
.-.+.+++...++.++|++|++-+....
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A 260 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRYARA 260 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHHHHHH
Confidence 2235566666688999999999887644
No 480
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.70 E-value=0.0036 Score=56.47 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.3
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|+.|+|||||++.++..+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567899999999999999999987654
No 481
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.69 E-value=0.035 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
....++|.|++|+|||+|++.+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3468889999999999999999875
No 482
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.69 E-value=0.021 Score=50.93 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|+.|+|||||++.++..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4677899999999999999999988764
No 483
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.68 E-value=0.003 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy200 222 MYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l 243 (490)
+.|.|++|+||||+++.+.+.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 484
>KOG0922|consensus
Probab=96.68 E-value=0.033 Score=58.69 Aligned_cols=125 Identities=21% Similarity=0.295 Sum_probs=70.3
Q ss_pred HHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC--HHHHHHHHHHHhcCCCC---
Q psy200 204 EGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN--AASVYETIVNELKLKPG--- 278 (490)
Q Consensus 204 ~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~--~~~l~~~i~~~l~~~~~--- 278 (490)
++|...+++ ...++|.|+.|+||||=+-.++.+.+....-. |-|...+- .-.+-..+..+.+....
T Consensus 57 ~~il~~ve~------nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~---I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 57 DQILYAVED------NQVLIVIGETGSGKSTQIPQYLAEAGFASSGK---IACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHH------CCEEEEEcCCCCCccccHhHHHHhcccccCCc---EEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 345555543 67899999999999999888887765322211 55555543 23455666666654211
Q ss_pred -------CC-cHHH------HHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCC--CCCCCcEEEEEec
Q psy200 279 -------GK-SERH------QLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWP--SIPGSKLVLVGVA 338 (490)
Q Consensus 279 -------~~-s~~~------~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~--~~~~~~vilI~~t 338 (490)
.. +.+. ---.|++++.. -.+..||+|||+|.=. -..+.|+.++... .....++|+..+|
T Consensus 128 GY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERs-l~TDiLlGlLKki~~~R~~LklIimSAT 204 (674)
T KOG0922|consen 128 GYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERS-LHTDILLGLLKKILKKRPDLKLIIMSAT 204 (674)
T ss_pred eeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhh-hHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 00 1110 01134444422 1456799999999832 2345665554322 2234567776666
No 485
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0013 Score=57.72 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++|+|.||+||||+++.+. .++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg 24 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG 24 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC
Confidence 57899999999999999998 654
No 486
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.66 E-value=0.027 Score=52.43 Aligned_cols=27 Identities=44% Similarity=0.581 Sum_probs=22.9
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.+..-.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456789999999999999999886544
No 487
>PRK00625 shikimate kinase; Provisional
Probab=96.66 E-value=0.0019 Score=58.07 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|+|.||+||||+++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999875
No 488
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.65 E-value=0.018 Score=55.51 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=57.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC------------------C-
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK------------------P- 277 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~------------------~- 277 (490)
..+..++|+|+||+|||+++..++...... +.+++|+.... +..++...... ++.. .
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e--~~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~~ 96 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEE--SPEELLENARS-FGWDLEVYIEKGKLAILDAFLSEK 96 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecC--CHHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccccc
Confidence 367899999999999999999998887533 56778886554 34444443322 2110 0
Q ss_pred ------C--CCcHHHHHHHHHHHHhcCCCeEEEEEecCccc
Q psy200 278 ------G--GKSERHQLGAILKYFDTKHKSILLILDEIDAL 310 (490)
Q Consensus 278 ------~--~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l 310 (490)
. ......+...+.++....+ ...+++|-+-.+
T Consensus 97 ~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~ 136 (260)
T COG0467 97 GLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITEL 136 (260)
T ss_pred ccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchH
Confidence 0 1234455666666665433 668999998854
No 489
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.64 E-value=0.003 Score=57.98 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=13.8
Q ss_pred eEEEECCCCCcHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLL 239 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l 239 (490)
..+++|.||+|||..|-..
T Consensus 2 I~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEEE--TTSSHHHHHHHH
T ss_pred EEEEEcCCCCcHhHHHHHH
Confidence 4689999999999987544
No 490
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.64 E-value=0.045 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l 243 (490)
+++|.|++|+|||+|++.+....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 47899999999999999987643
No 491
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.62 E-value=0.047 Score=50.08 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~ 242 (490)
.|+|.|.+|+|||++++.++..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 5889999999999999999864
No 492
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.62 E-value=0.032 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
...-.|+|.|.+|+|||++++++...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 35668999999999999999999875
No 493
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.62 E-value=0.018 Score=54.13 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=33.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVY 266 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~ 266 (490)
.+..++|.|+||+|||+++..++..... .+..++|++... +...+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~--~~~~l~ 60 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEE--REERIL 60 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHH
Confidence 4678899999999999999988776432 355677776644 344443
No 494
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.61 E-value=0.0032 Score=63.44 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=48.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCC---CHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVR---NAASVYETIVNELKLKPGGKSERHQLGAILKYFD 294 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~---~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~ 294 (490)
.+.++|+||+|+||||+++++++.+... .+..++.+.-+... ....+.. ..+ ...+.....+.+.+..++.
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~--~~q---~evg~~~~~~~~~l~~aLR 223 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLP--PAQ---SQIGRDVDSFANGIRLALR 223 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeec--ccc---cccCCCccCHHHHHHHhhc
Confidence 5688999999999999999999887532 23344444211110 0000000 000 1111222344555566665
Q ss_pred cCCCeEEEEEecCccc
Q psy200 295 TKHKSILLILDEIDAL 310 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l 310 (490)
. .|-+|+|+|+-.-
T Consensus 224 ~--~PD~I~vGEiRd~ 237 (372)
T TIGR02525 224 R--APKIIGVGEIRDL 237 (372)
T ss_pred c--CCCEEeeCCCCCH
Confidence 3 5789999999874
No 495
>PRK05748 replicative DNA helicase; Provisional
Probab=96.61 E-value=0.023 Score=59.28 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=36.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
++..++|.|.||+|||+++-.++.......+..+++++.- .+..++...++..
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE--ms~~~l~~R~l~~ 254 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE--MGAESLVMRMLCA 254 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 4567889999999999999999887653344566665432 2556666665543
No 496
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.60 E-value=0.0091 Score=50.16 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
..+..++|.|+-|+||||+++.+++.++.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34678999999999999999999999963
No 497
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.60 E-value=0.014 Score=57.86 Aligned_cols=92 Identities=24% Similarity=0.282 Sum_probs=53.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-----CCceEEEEeccCCCCHHHHHHHHHHHhcCCCC----------CCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-----DAFKTIYINCNSVRNAASVYETIVNELKLKPG----------GKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~----------~~s~ 282 (490)
.+..+.|+|+||+|||+++..++...... .+-.++|++.....+... +..+...++.... ..+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCCh
Confidence 46678899999999999999887643211 123678888776545443 3333343332110 0123
Q ss_pred HHHHHHHHHH---HhcCCCeEEEEEecCcccc
Q psy200 283 RHQLGAILKY---FDTKHKSILLILDEIDALE 311 (490)
Q Consensus 283 ~~~~~~l~~~---l~~~~~~~vI~IDEid~l~ 311 (490)
++....+... +.. .+..+||||-+..++
T Consensus 174 ~~~~~~l~~~~~~~~~-~~~~LvVIDSI~al~ 204 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSE-SRFALLIVDSATALY 204 (316)
T ss_pred HHHHHHHHHHHHhhcc-CCccEEEEECcHHHh
Confidence 3333333322 222 457799999998874
No 498
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.57 E-value=0.008 Score=61.43 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=56.5
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC-CCCHHHHHHHHHHHhcCC-------CCCCc-HHH--
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS-VRNAASVYETIVNELKLK-------PGGKS-ERH-- 284 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~-~~~~~~l~~~i~~~l~~~-------~~~~s-~~~-- 284 (490)
-..+..+.|.|++|+|||||++.++.... .+..++ .-+.. .....+|+..++..-... ....+ ...
T Consensus 159 i~~GqrigI~G~sG~GKSTLL~~I~~~~~--~dv~Vi-~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 159 VGKGQRMGLFAGSGVGKSVLLGMMTRGTT--ADVIVV-GLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred EcCCCEEEEECCCCCChhHHHHHhccCCC--CCEEEE-EEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 35678899999999999999999986543 333333 32222 223455666554431110 11111 111
Q ss_pred ---HHHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 285 ---QLGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 285 ---~~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
..-.+.+++...++.++|++|++-++...
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A 267 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYAQA 267 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHHHH
Confidence 12235566666688999999999887644
No 499
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.56 E-value=0.024 Score=51.90 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=27.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
+..|+|.|++|+||||+++.+++.+.. .++.++.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~-~g~~v~~~~ 38 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE-NGYDVLFTR 38 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 457889999999999999999999863 233444443
No 500
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.56 E-value=0.0041 Score=60.27 Aligned_cols=106 Identities=22% Similarity=0.295 Sum_probs=59.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+++.-.....+.+.++|...+ ...+.++|.|++|+||||++++++..+... ...++.+.-........ ...+
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v--~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~~l~~-----~~~~ 175 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAV--RGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIEDPPELRLPG-----PNQI 175 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCH--HTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S--SC-----SSEE
T ss_pred hhccCchhhHHHHHHHHhhcc--ccceEEEEECCCccccchHHHHHhhhcccc-ccceEEeccccceeecc-----cceE
Confidence 555555555567777776543 347899999999999999999999988633 24555554221110000 0000
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccc
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDAL 310 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l 310 (490)
..... .....+.+.+..++. ..|-+|+|+|+-.-
T Consensus 176 ~~~~~-~~~~~~~~~l~~~LR--~~pD~iiigEiR~~ 209 (270)
T PF00437_consen 176 QIQTR-RDEISYEDLLKSALR--QDPDVIIIGEIRDP 209 (270)
T ss_dssp EEEEE-TTTBSHHHHHHHHTT--S--SEEEESCE-SC
T ss_pred EEEee-cCcccHHHHHHHHhc--CCCCcccccccCCH
Confidence 00000 123344555555565 34679999999874
Done!