Query psy200
Match_columns 490
No_of_seqs 341 out of 2687
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 21:41:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3te6_A Regulatory protein SIR3 100.0 7.7E-32 2.6E-36 263.3 19.6 252 194-449 20-317 (318)
2 2v1u_A Cell division control p 100.0 2.3E-28 7.7E-33 247.8 23.2 275 194-479 19-304 (387)
3 1fnn_A CDC6P, cell division co 100.0 3.5E-26 1.2E-30 232.0 28.9 273 194-479 17-302 (389)
4 2qby_B CDC6 homolog 3, cell di 99.9 1.6E-26 5.6E-31 234.3 24.8 263 194-476 20-295 (384)
5 2qby_A CDC6 homolog 1, cell di 99.9 2.1E-26 7.3E-31 233.0 23.0 276 194-480 20-301 (386)
6 1w5s_A Origin recognition comp 99.9 1.5E-24 5.1E-29 221.8 27.9 274 194-479 22-322 (412)
7 4b4t_J 26S protease regulatory 99.9 2.1E-22 7.2E-27 201.0 21.7 220 194-450 148-392 (405)
8 4b4t_I 26S protease regulatory 99.9 4.7E-22 1.6E-26 198.9 21.8 223 194-452 182-428 (437)
9 3pfi_A Holliday junction ATP-d 99.9 7.8E-21 2.7E-25 189.2 26.0 242 179-477 18-275 (338)
10 4b4t_H 26S protease regulatory 99.9 3.1E-21 1.1E-25 194.9 23.1 219 194-449 209-452 (467)
11 4b4t_M 26S protease regulatory 99.9 2E-21 6.8E-26 196.9 19.4 222 194-452 181-427 (434)
12 4b4t_L 26S protease subunit RP 99.9 2.3E-21 7.9E-26 196.6 19.9 220 194-450 181-425 (437)
13 4b4t_K 26S protease regulatory 99.9 1.3E-20 4.6E-25 190.8 22.0 220 194-449 172-416 (428)
14 2chg_A Replication factor C sm 99.9 1.4E-20 4.9E-25 174.8 20.5 214 179-445 6-224 (226)
15 3uk6_A RUVB-like 2; hexameric 99.9 5.1E-20 1.7E-24 185.5 25.1 236 194-448 44-331 (368)
16 3eie_A Vacuolar protein sortin 99.9 2.8E-20 9.6E-25 184.0 21.9 228 194-452 18-303 (322)
17 2qp9_X Vacuolar protein sortin 99.8 8E-20 2.7E-24 183.0 23.0 228 194-452 51-336 (355)
18 3h4m_A Proteasome-activating n 99.8 6.6E-20 2.2E-24 178.0 20.8 220 194-450 17-261 (285)
19 1xwi_A SKD1 protein; VPS4B, AA 99.8 2.5E-19 8.4E-24 177.0 25.1 229 194-452 12-304 (322)
20 3pvs_A Replication-associated 99.8 4.1E-20 1.4E-24 190.0 19.3 218 179-447 15-244 (447)
21 1hqc_A RUVB; extended AAA-ATPa 99.8 6.9E-20 2.4E-24 181.2 19.3 235 194-481 12-263 (324)
22 3vfd_A Spastin; ATPase, microt 99.8 2.1E-19 7.2E-24 182.4 23.0 236 180-450 105-368 (389)
23 1lv7_A FTSH; alpha/beta domain 99.8 3.5E-19 1.2E-23 170.3 20.8 218 194-449 12-254 (257)
24 1sxj_D Activator 1 41 kDa subu 99.8 9.6E-20 3.3E-24 182.2 17.6 236 178-446 25-262 (353)
25 3u61_B DNA polymerase accessor 99.8 6E-20 2E-24 181.8 15.5 211 177-445 13-235 (324)
26 3d8b_A Fidgetin-like protein 1 99.8 1.3E-18 4.5E-23 174.4 25.2 228 194-452 84-339 (357)
27 1sxj_A Activator 1 95 kDa subu 99.8 2.7E-20 9.3E-25 195.7 13.5 231 178-446 27-273 (516)
28 1in4_A RUVB, holliday junction 99.8 3.6E-18 1.2E-22 169.7 27.0 237 194-483 25-277 (334)
29 2qz4_A Paraplegin; AAA+, SPG7, 99.8 4.3E-19 1.5E-23 169.9 19.3 221 194-450 6-252 (262)
30 3b9p_A CG5977-PA, isoform A; A 99.8 2.6E-18 8.7E-23 167.8 24.6 226 194-450 21-275 (297)
31 3syl_A Protein CBBX; photosynt 99.8 5.8E-19 2E-23 173.3 18.5 221 194-442 31-281 (309)
32 1sxj_B Activator 1 37 kDa subu 99.8 4.4E-19 1.5E-23 175.0 17.3 216 179-447 10-231 (323)
33 1ofh_A ATP-dependent HSL prote 99.8 9.8E-19 3.4E-23 171.5 19.6 236 194-449 15-301 (310)
34 1njg_A DNA polymerase III subu 99.8 1E-18 3.6E-23 164.3 18.7 233 179-444 12-248 (250)
35 2ce7_A Cell division protein F 99.8 2.8E-18 9.4E-23 176.7 23.0 220 194-450 16-259 (476)
36 1iqp_A RFCS; clamp loader, ext 99.8 6.5E-19 2.2E-23 174.1 17.2 198 179-419 14-216 (327)
37 2chq_A Replication factor C sm 99.8 3.7E-19 1.3E-23 175.2 15.1 217 178-444 5-223 (319)
38 2zan_A Vacuolar protein sortin 99.8 2.5E-18 8.7E-23 177.1 20.8 229 194-452 134-426 (444)
39 2c9o_A RUVB-like 1; hexameric 99.8 3.3E-18 1.1E-22 177.1 21.4 132 300-448 297-438 (456)
40 3cf0_A Transitional endoplasmi 99.8 4.1E-19 1.4E-23 173.9 13.6 227 194-452 15-286 (301)
41 3bos_A Putative DNA replicatio 99.8 1.5E-18 5.2E-23 163.5 15.4 209 194-445 28-241 (242)
42 1sxj_C Activator 1 40 kDa subu 99.8 1.4E-18 4.7E-23 173.2 15.8 221 177-445 12-237 (340)
43 3hu3_A Transitional endoplasmi 99.8 2.9E-18 9.9E-23 177.9 16.7 226 194-452 204-464 (489)
44 1jr3_A DNA polymerase III subu 99.8 1.3E-17 4.3E-22 168.1 18.6 229 179-444 5-241 (373)
45 2r44_A Uncharacterized protein 99.7 1.1E-16 3.8E-21 158.7 21.2 238 180-452 17-302 (331)
46 3cf2_A TER ATPase, transitiona 99.7 4.2E-18 1.4E-22 184.4 11.7 226 194-451 204-463 (806)
47 1l8q_A Chromosomal replication 99.7 1.2E-16 4.1E-21 158.0 20.8 223 194-450 11-243 (324)
48 2z4s_A Chromosomal replication 99.7 3.4E-17 1.1E-21 168.4 17.0 201 219-448 130-333 (440)
49 1sxj_E Activator 1 40 kDa subu 99.7 2.5E-17 8.5E-22 164.9 15.5 204 179-422 3-244 (354)
50 1d2n_A N-ethylmaleimide-sensit 99.7 1.2E-16 4.1E-21 154.0 19.5 209 194-448 33-265 (272)
51 2r62_A Cell division protease 99.7 1E-19 3.5E-24 175.1 -2.1 223 194-452 11-258 (268)
52 2dhr_A FTSH; AAA+ protein, hex 99.7 7.7E-17 2.6E-21 166.9 17.6 217 194-450 31-274 (499)
53 3cf2_A TER ATPase, transitiona 99.7 2.3E-18 7.9E-23 186.5 6.3 226 194-452 477-748 (806)
54 1ojl_A Transcriptional regulat 99.7 2.2E-17 7.7E-22 161.6 12.2 215 194-423 2-236 (304)
55 1um8_A ATP-dependent CLP prote 99.7 1.3E-16 4.4E-21 161.1 17.9 234 194-448 21-366 (376)
56 4fcw_A Chaperone protein CLPB; 99.7 9.4E-17 3.2E-21 157.6 16.2 218 194-423 17-279 (311)
57 2bjv_A PSP operon transcriptio 99.7 1.5E-16 5E-21 152.7 13.5 216 194-423 6-241 (265)
58 2x8a_A Nuclear valosin-contain 99.7 4.5E-15 1.5E-19 142.9 21.4 231 194-452 10-269 (274)
59 3hws_A ATP-dependent CLP prote 99.7 5.9E-16 2E-20 155.5 15.5 230 194-444 15-346 (363)
60 3pxg_A Negative regulator of g 99.7 1.5E-15 5E-20 157.5 18.5 214 194-447 180-406 (468)
61 1ixz_A ATP-dependent metallopr 99.7 1.8E-15 6.1E-20 144.2 17.3 213 194-444 16-253 (254)
62 1iy2_A ATP-dependent metallopr 99.7 2.2E-15 7.5E-20 145.6 17.6 213 194-444 40-277 (278)
63 1g8p_A Magnesium-chelatase 38 99.7 2.5E-15 8.4E-20 149.9 18.4 240 194-452 24-327 (350)
64 1r6b_X CLPA protein; AAA+, N-t 99.6 1.2E-14 4.2E-19 159.8 21.6 234 194-451 186-437 (758)
65 1a5t_A Delta prime, HOLB; zinc 99.6 2.2E-14 7.6E-19 142.3 20.9 196 199-419 7-209 (334)
66 1qvr_A CLPB protein; coiled co 99.6 5.4E-15 1.9E-19 164.4 18.2 206 194-425 170-395 (854)
67 3pxi_A Negative regulator of g 99.6 3.5E-15 1.2E-19 164.0 15.6 206 194-423 491-725 (758)
68 3m6a_A ATP-dependent protease 99.6 4.3E-15 1.5E-19 156.6 15.3 233 194-446 81-340 (543)
69 2qen_A Walker-type ATPase; unk 99.6 2.6E-14 8.8E-19 142.2 19.7 196 194-415 12-245 (350)
70 1jbk_A CLPB protein; beta barr 99.6 2.3E-15 8E-20 136.0 10.4 157 194-376 22-194 (195)
71 1r6b_X CLPA protein; AAA+, N-t 99.6 1.2E-14 4E-19 160.0 14.5 215 194-421 458-714 (758)
72 1g41_A Heat shock protein HSLU 99.5 1.7E-13 5.8E-18 139.1 19.3 148 299-449 251-435 (444)
73 3t15_A Ribulose bisphosphate c 99.5 3.5E-14 1.2E-18 138.1 13.6 157 217-406 34-217 (293)
74 3pxi_A Negative regulator of g 99.5 9.3E-14 3.2E-18 152.7 18.3 196 194-425 180-388 (758)
75 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 6.6E-14 2.3E-18 145.1 14.8 228 194-449 22-287 (500)
76 1qvr_A CLPB protein; coiled co 99.5 3.4E-14 1.2E-18 157.9 13.5 220 194-423 558-820 (854)
77 2gno_A DNA polymerase III, gam 99.5 5.2E-13 1.8E-17 130.2 17.0 172 198-418 1-176 (305)
78 2p65_A Hypothetical protein PF 99.5 2.6E-14 8.9E-19 128.6 7.1 149 194-368 22-187 (187)
79 1ny5_A Transcriptional regulat 99.5 5.4E-13 1.8E-17 134.8 15.2 227 194-443 137-383 (387)
80 3k1j_A LON protease, ATP-depen 99.5 2.2E-13 7.5E-18 145.7 12.3 239 194-446 41-374 (604)
81 3dzd_A Transcriptional regulat 99.4 3.6E-13 1.2E-17 135.1 11.7 214 194-423 129-362 (368)
82 2fna_A Conserved hypothetical 99.4 7.2E-12 2.5E-16 124.6 19.5 192 194-415 13-249 (357)
83 1ypw_A Transitional endoplasmi 99.4 1.3E-12 4.3E-17 143.8 15.0 224 194-450 204-462 (806)
84 1ypw_A Transitional endoplasmi 99.4 1.1E-15 3.8E-20 168.1 -9.4 202 194-426 477-702 (806)
85 3n70_A Transport activator; si 99.4 2.7E-13 9.3E-18 117.5 7.6 138 195-367 2-144 (145)
86 2a5y_B CED-4; apoptosis; HET: 99.4 1E-11 3.5E-16 131.4 20.1 195 197-417 131-338 (549)
87 3co5_A Putative two-component 99.4 6E-13 2E-17 115.1 7.4 137 194-367 4-142 (143)
88 3f9v_A Minichromosome maintena 99.3 8.5E-13 2.9E-17 140.3 6.8 237 183-448 285-588 (595)
89 1jr3_D DNA polymerase III, del 99.2 5.1E-10 1.7E-14 111.2 19.8 189 217-448 16-210 (343)
90 1z6t_A APAF-1, apoptotic prote 99.2 1.3E-10 4.4E-15 124.1 15.5 194 194-419 124-331 (591)
91 3ec2_A DNA replication protein 99.1 2.3E-10 7.8E-15 102.6 10.4 126 194-339 10-141 (180)
92 1vt4_I APAF-1 related killer D 99.1 1.9E-09 6.6E-14 118.2 18.7 191 194-419 128-337 (1221)
93 3sfz_A APAF-1, apoptotic pepti 99.1 1.8E-09 6.3E-14 124.7 19.3 197 194-419 124-331 (1249)
94 3f8t_A Predicted ATPase involv 99.0 4.8E-09 1.7E-13 105.8 13.8 236 183-448 204-484 (506)
95 2kjq_A DNAA-related protein; s 99.0 6.1E-10 2.1E-14 96.7 6.2 106 218-357 35-141 (149)
96 2w58_A DNAI, primosome compone 98.9 1.5E-09 5.2E-14 99.1 7.3 100 194-311 25-128 (202)
97 4akg_A Glutathione S-transfera 98.9 1.4E-08 4.9E-13 122.4 14.7 162 202-383 1252-1434(2695)
98 2qgz_A Helicase loader, putati 98.6 5.7E-08 1.9E-12 94.7 6.4 57 200-257 134-190 (308)
99 1u0j_A DNA replication protein 98.3 4.7E-06 1.6E-10 78.5 13.3 132 206-379 89-250 (267)
100 3vkg_A Dynein heavy chain, cyt 98.3 2E-06 6.8E-11 104.7 13.1 158 205-382 1292-1471(3245)
101 3upu_A ATP-dependent DNA helic 98.3 8.6E-07 2.9E-11 91.4 6.7 142 178-339 12-165 (459)
102 2r2a_A Uncharacterized protein 98.2 2.6E-06 8.8E-11 77.3 8.6 136 219-366 5-152 (199)
103 1tue_A Replication protein E1; 98.2 1.1E-06 3.8E-11 79.1 5.8 45 197-244 39-83 (212)
104 4akg_A Glutathione S-transfera 98.2 6.7E-05 2.3E-09 91.1 21.0 130 219-379 645-792 (2695)
105 2b8t_A Thymidine kinase; deoxy 98.0 3.2E-06 1.1E-10 77.9 4.0 112 217-337 10-124 (223)
106 1n0w_A DNA repair protein RAD5 97.9 7.8E-05 2.7E-09 69.3 12.6 94 218-313 23-134 (243)
107 2cvh_A DNA repair and recombin 97.9 3.4E-05 1.2E-09 70.6 9.4 88 218-312 19-119 (220)
108 1ye8_A Protein THEP1, hypothet 97.9 0.00015 5E-09 64.4 12.3 24 221-244 2-25 (178)
109 2w0m_A SSO2452; RECA, SSPF, un 97.8 9.8E-05 3.3E-09 68.0 10.7 89 218-311 22-136 (235)
110 2vhj_A Ntpase P4, P4; non- hyd 97.8 4.3E-05 1.5E-09 73.8 8.1 75 218-312 122-196 (331)
111 2orw_A Thymidine kinase; TMTK, 97.8 7.3E-06 2.5E-10 73.4 2.4 111 219-339 3-113 (184)
112 2z43_A DNA repair and recombin 97.7 0.00013 4.4E-09 71.4 10.1 94 218-312 106-217 (324)
113 3hr8_A Protein RECA; alpha and 97.7 0.00021 7.3E-09 70.4 11.4 88 218-312 60-153 (356)
114 1w4r_A Thymidine kinase; type 97.7 2.3E-05 8E-10 70.0 4.0 107 217-339 18-127 (195)
115 1v5w_A DMC1, meiotic recombina 97.7 0.00023 7.8E-09 70.2 11.6 94 218-312 121-233 (343)
116 1xp8_A RECA protein, recombina 97.7 0.00047 1.6E-08 68.3 13.5 88 218-312 73-166 (366)
117 2zr9_A Protein RECA, recombina 97.6 0.00017 5.9E-09 71.1 10.1 87 218-311 60-152 (349)
118 3e1s_A Exodeoxyribonuclease V, 97.6 0.00022 7.5E-09 75.2 11.5 109 219-339 204-316 (574)
119 3cmu_A Protein RECA, recombina 97.6 0.00015 5E-09 85.5 10.5 88 218-312 1426-1519(2050)
120 3kl4_A SRP54, signal recogniti 97.6 0.00095 3.3E-08 67.5 15.1 237 199-449 68-342 (433)
121 3dm5_A SRP54, signal recogniti 97.6 0.0033 1.1E-07 63.5 18.9 233 200-449 73-342 (443)
122 1cr0_A DNA primase/helicase; R 97.6 0.00031 1.1E-08 67.6 10.7 40 217-256 33-72 (296)
123 2r6a_A DNAB helicase, replicat 97.6 0.00045 1.5E-08 70.8 12.5 92 218-312 202-327 (454)
124 2dr3_A UPF0273 protein PH0284; 97.5 0.00063 2.2E-08 63.1 12.0 89 218-311 22-141 (247)
125 3lda_A DNA repair protein RAD5 97.5 0.0003 1E-08 70.6 10.2 93 218-312 177-287 (400)
126 2q6t_A DNAB replication FORK h 97.5 0.00069 2.4E-08 69.2 12.9 93 218-313 199-325 (444)
127 2fz4_A DNA repair protein RAD2 97.5 0.00094 3.2E-08 62.1 12.5 103 197-318 93-212 (237)
128 2ehv_A Hypothetical protein PH 97.5 0.00013 4.6E-09 68.0 6.7 39 218-256 29-67 (251)
129 4a1f_A DNAB helicase, replicat 97.4 0.00088 3E-08 65.5 12.0 121 217-340 44-207 (338)
130 1u94_A RECA protein, recombina 97.4 0.00045 1.5E-08 68.3 9.9 88 218-312 62-155 (356)
131 4a74_A DNA repair and recombin 97.4 0.00026 9E-09 65.0 7.7 42 218-259 24-70 (231)
132 1sky_E F1-ATPase, F1-ATP synth 97.4 0.00049 1.7E-08 69.9 10.1 97 218-314 150-261 (473)
133 1pzn_A RAD51, DNA repair and r 97.4 0.00035 1.2E-08 69.0 8.8 94 218-312 130-245 (349)
134 1w36_D RECD, exodeoxyribonucle 97.4 0.0002 6.8E-09 76.2 7.1 26 219-244 164-189 (608)
135 2i3b_A HCR-ntpase, human cance 97.4 1.9E-05 6.5E-10 70.9 -0.7 25 220-244 2-26 (189)
136 3io5_A Recombination and repai 97.4 0.00092 3.2E-08 64.3 10.6 88 220-312 29-125 (333)
137 3bh0_A DNAB-like replicative h 97.4 0.0019 6.6E-08 62.6 13.2 92 217-312 66-195 (315)
138 3tlx_A Adenylate kinase 2; str 97.3 0.0025 8.5E-08 59.4 13.2 28 217-244 27-54 (243)
139 3llm_A ATP-dependent RNA helic 97.3 0.0014 4.8E-08 60.7 11.1 115 219-339 76-218 (235)
140 3sr0_A Adenylate kinase; phosp 97.3 0.0015 5.1E-08 59.3 11.0 24 221-244 2-25 (206)
141 2i1q_A DNA repair and recombin 97.3 0.00082 2.8E-08 65.5 9.7 94 218-312 97-218 (322)
142 2px0_A Flagellar biosynthesis 97.3 0.0042 1.4E-07 59.7 14.4 89 218-310 104-194 (296)
143 3umf_A Adenylate kinase; rossm 97.3 0.0047 1.6E-07 56.4 13.9 28 217-244 27-54 (217)
144 3cmw_A Protein RECA, recombina 97.3 0.00043 1.5E-08 80.6 8.5 87 219-313 1082-1175(1706)
145 1ex7_A Guanylate kinase; subst 97.2 0.0052 1.8E-07 54.7 13.2 24 220-243 2-25 (186)
146 2j9r_A Thymidine kinase; TK1, 97.2 0.00033 1.1E-08 63.6 5.0 107 218-337 27-136 (214)
147 1xx6_A Thymidine kinase; NESG, 97.2 0.00013 4.4E-09 65.5 2.4 109 217-338 6-117 (191)
148 1nlf_A Regulatory protein REPA 97.2 0.0011 3.7E-08 63.2 8.9 27 218-244 29-55 (279)
149 2zts_A Putative uncharacterize 97.2 0.0011 3.6E-08 61.7 8.5 49 218-268 29-77 (251)
150 3ice_A Transcription terminati 97.1 0.00049 1.7E-08 67.8 6.0 95 215-312 170-275 (422)
151 3bgw_A DNAB-like replicative h 97.1 0.003 1E-07 64.4 12.0 91 218-312 196-324 (444)
152 3e2i_A Thymidine kinase; Zn-bi 97.1 0.00026 8.7E-09 64.2 3.4 109 217-339 26-138 (219)
153 2iut_A DNA translocase FTSK; n 97.1 0.015 5.3E-07 60.4 17.0 73 299-377 344-420 (574)
154 3cmu_A Protein RECA, recombina 97.1 0.0016 5.3E-08 77.0 10.5 89 218-312 1080-1173(2050)
155 1q57_A DNA primase/helicase; d 97.1 0.0032 1.1E-07 65.3 12.0 92 218-312 241-368 (503)
156 1vma_A Cell division protein F 97.1 0.0034 1.2E-07 60.6 11.2 90 218-310 103-198 (306)
157 3vkg_A Dynein heavy chain, cyt 97.0 0.018 6.2E-07 70.9 19.6 159 195-383 1624-1829(3245)
158 1qde_A EIF4A, translation init 97.0 0.0022 7.4E-08 58.6 9.3 35 220-254 52-88 (224)
159 3be4_A Adenylate kinase; malar 97.0 0.0033 1.1E-07 57.4 9.9 26 219-244 5-30 (217)
160 2ga8_A Hypothetical 39.9 kDa p 97.0 0.001 3.6E-08 65.1 6.6 48 197-244 2-49 (359)
161 1qhx_A CPT, protein (chloramph 97.0 0.00072 2.5E-08 59.4 5.0 26 219-244 3-28 (178)
162 3cmw_A Protein RECA, recombina 96.9 0.0023 7.8E-08 74.6 10.2 87 218-311 731-823 (1706)
163 1g5t_A COB(I)alamin adenosyltr 96.9 0.00094 3.2E-08 59.7 5.2 118 218-339 27-161 (196)
164 2r8r_A Sensor protein; KDPD, P 96.9 0.0031 1.1E-07 57.6 8.6 39 220-259 7-45 (228)
165 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0036 1.2E-07 58.9 9.4 35 219-254 4-38 (260)
166 2gxq_A Heat resistant RNA depe 96.9 0.004 1.4E-07 56.0 9.4 25 219-243 38-63 (207)
167 3dl0_A Adenylate kinase; phosp 96.9 0.0075 2.6E-07 54.7 11.3 24 221-244 2-25 (216)
168 1hv8_A Putative ATP-dependent 96.8 0.0052 1.8E-07 60.2 10.2 36 219-254 44-80 (367)
169 2v3c_C SRP54, signal recogniti 96.8 0.0027 9.3E-08 64.3 8.2 88 219-311 99-193 (432)
170 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.6E-08 58.8 4.4 26 219-244 5-30 (185)
171 3vaa_A Shikimate kinase, SK; s 96.7 0.0012 4.1E-08 59.4 4.7 27 218-244 24-50 (199)
172 1vec_A ATP-dependent RNA helic 96.7 0.0039 1.3E-07 56.0 8.0 40 298-338 146-186 (206)
173 1tev_A UMP-CMP kinase; ploop, 96.7 0.0031 1.1E-07 55.9 7.3 26 219-244 3-28 (196)
174 4eun_A Thermoresistant glucoki 96.7 0.0011 3.7E-08 59.8 4.1 38 216-259 26-63 (200)
175 1gvn_B Zeta; postsegregational 96.7 0.0012 4.2E-08 63.1 4.6 26 218-243 32-57 (287)
176 3uie_A Adenylyl-sulfate kinase 96.7 0.0016 5.5E-08 58.6 5.2 38 217-255 23-60 (200)
177 2orv_A Thymidine kinase; TP4A 96.7 0.0014 4.9E-08 60.0 4.6 103 218-337 18-124 (234)
178 2p5t_B PEZT; postsegregational 96.7 0.0018 6.2E-08 60.7 5.5 27 218-244 31-57 (253)
179 3kb2_A SPBC2 prophage-derived 96.6 0.0013 4.4E-08 57.3 4.2 25 220-244 2-26 (173)
180 3bor_A Human initiation factor 96.6 0.002 6.9E-08 59.6 5.7 40 298-338 173-213 (237)
181 3jvv_A Twitching mobility prot 96.6 0.00057 1.9E-08 67.5 2.0 86 217-308 121-206 (356)
182 3e70_C DPA, signal recognition 96.6 0.037 1.3E-06 53.8 14.9 91 218-311 128-224 (328)
183 2ius_A DNA translocase FTSK; n 96.6 0.028 9.5E-07 57.9 14.5 73 300-378 299-375 (512)
184 4gp7_A Metallophosphoesterase; 96.6 0.0014 5E-08 57.4 4.2 22 218-239 8-29 (171)
185 3b6e_A Interferon-induced heli 96.6 0.0015 5.3E-08 59.0 4.5 40 197-243 33-72 (216)
186 3iij_A Coilin-interacting nucl 96.6 0.0017 5.8E-08 57.2 4.6 27 218-244 10-36 (180)
187 3zvl_A Bifunctional polynucleo 96.6 0.0058 2E-07 61.7 9.1 27 218-244 257-283 (416)
188 1rz3_A Hypothetical protein rb 96.6 0.0026 9.1E-08 57.3 5.9 46 198-244 2-47 (201)
189 1kag_A SKI, shikimate kinase I 96.5 0.0015 5E-08 57.1 3.8 26 219-244 4-29 (173)
190 3l0o_A Transcription terminati 96.5 0.0016 5.5E-08 64.1 4.3 97 216-312 172-276 (427)
191 3fmo_B ATP-dependent RNA helic 96.5 0.016 5.3E-07 55.7 11.4 28 217-244 129-157 (300)
192 2xb4_A Adenylate kinase; ATP-b 96.5 0.014 4.8E-07 53.3 10.6 24 221-244 2-25 (223)
193 1y63_A LMAJ004144AAA protein; 96.5 0.0022 7.6E-08 56.9 4.8 25 218-242 9-33 (184)
194 1kht_A Adenylate kinase; phosp 96.5 0.0017 5.8E-08 57.6 4.0 26 219-244 3-28 (192)
195 1via_A Shikimate kinase; struc 96.5 0.0021 7.3E-08 56.3 4.5 25 220-244 5-29 (175)
196 1zuh_A Shikimate kinase; alpha 96.5 0.0021 7.2E-08 55.9 4.4 27 218-244 6-32 (168)
197 3c8u_A Fructokinase; YP_612366 96.5 0.0023 7.7E-08 58.0 4.7 28 217-244 20-47 (208)
198 3vkw_A Replicase large subunit 96.5 0.0046 1.6E-07 62.4 7.3 107 218-340 160-271 (446)
199 2rhm_A Putative kinase; P-loop 96.5 0.0021 7.1E-08 57.1 4.4 27 218-244 4-30 (193)
200 2j37_W Signal recognition part 96.4 0.035 1.2E-06 57.2 14.0 90 219-311 101-196 (504)
201 3lw7_A Adenylate kinase relate 96.4 0.0025 8.5E-08 55.4 4.6 24 220-244 2-25 (179)
202 2iyv_A Shikimate kinase, SK; t 96.4 0.0023 7.8E-08 56.6 4.3 25 220-244 3-27 (184)
203 2oxc_A Probable ATP-dependent 96.4 0.011 3.8E-07 54.2 9.2 36 219-254 61-98 (230)
204 3eiq_A Eukaryotic initiation f 96.4 0.0098 3.4E-07 59.4 9.5 40 298-338 183-223 (414)
205 2cdn_A Adenylate kinase; phosp 96.4 0.0029 9.8E-08 56.9 4.9 27 218-244 19-45 (201)
206 3fe2_A Probable ATP-dependent 96.4 0.03 1E-06 51.7 11.9 40 298-338 176-216 (242)
207 1q0u_A Bstdead; DEAD protein, 96.3 0.0098 3.3E-07 54.1 8.3 40 298-338 150-190 (219)
208 1aky_A Adenylate kinase; ATP:A 96.3 0.003 1E-07 57.7 4.8 27 218-244 3-29 (220)
209 2c95_A Adenylate kinase 1; tra 96.3 0.0029 9.8E-08 56.4 4.6 27 218-244 8-34 (196)
210 3cm0_A Adenylate kinase; ATP-b 96.3 0.0025 8.5E-08 56.3 4.1 26 219-244 4-29 (186)
211 2z0h_A DTMP kinase, thymidylat 96.3 0.0056 1.9E-07 54.5 6.4 50 221-271 2-51 (197)
212 1e6c_A Shikimate kinase; phosp 96.3 0.0031 1.1E-07 54.9 4.6 25 220-244 3-27 (173)
213 3lxw_A GTPase IMAP family memb 96.3 0.023 8E-07 52.8 10.9 24 219-242 21-44 (247)
214 3pey_A ATP-dependent RNA helic 96.3 0.015 5.3E-07 57.4 10.2 24 217-240 42-65 (395)
215 3lfu_A DNA helicase II; SF1 he 96.3 0.0083 2.8E-07 64.1 8.8 36 299-338 214-249 (647)
216 3t61_A Gluconokinase; PSI-biol 96.3 0.0027 9.1E-08 57.1 4.2 27 218-244 17-43 (202)
217 3dkp_A Probable ATP-dependent 96.3 0.03 1E-06 51.7 11.5 41 298-338 175-219 (245)
218 1ly1_A Polynucleotide kinase; 96.3 0.0022 7.4E-08 56.3 3.4 22 220-241 3-24 (181)
219 1kgd_A CASK, peripheral plasma 96.3 0.0026 8.8E-08 56.2 3.9 26 218-243 4-29 (180)
220 2pbr_A DTMP kinase, thymidylat 96.3 0.007 2.4E-07 53.6 6.7 35 221-256 2-36 (195)
221 2qor_A Guanylate kinase; phosp 96.3 0.0025 8.5E-08 57.5 3.7 27 218-244 11-37 (204)
222 1nks_A Adenylate kinase; therm 96.2 0.0023 7.9E-08 56.7 3.4 34 220-254 2-35 (194)
223 2v54_A DTMP kinase, thymidylat 96.2 0.006 2E-07 54.7 6.2 36 218-256 3-38 (204)
224 1s2m_A Putative ATP-dependent 96.2 0.02 6.9E-07 56.9 10.7 21 220-240 59-79 (400)
225 2ze6_A Isopentenyl transferase 96.2 0.0029 9.8E-08 59.4 4.1 24 221-244 3-26 (253)
226 2pez_A Bifunctional 3'-phospho 96.2 0.0046 1.6E-07 54.3 5.2 37 218-255 4-40 (179)
227 2vli_A Antibiotic resistance p 96.2 0.002 7E-08 56.7 2.9 26 219-244 5-30 (183)
228 1zp6_A Hypothetical protein AT 96.2 0.0023 7.7E-08 56.9 3.2 35 217-255 7-41 (191)
229 2plr_A DTMP kinase, probable t 96.2 0.0029 9.9E-08 57.1 3.9 26 219-244 4-29 (213)
230 2bwj_A Adenylate kinase 5; pho 96.2 0.0036 1.2E-07 55.9 4.4 26 219-244 12-37 (199)
231 1knq_A Gluconate kinase; ALFA/ 96.2 0.0031 1.1E-07 55.1 3.9 27 218-244 7-33 (175)
232 3ber_A Probable ATP-dependent 96.2 0.04 1.4E-06 51.2 11.8 40 298-338 186-226 (249)
233 4b3f_X DNA-binding protein smu 96.2 0.0052 1.8E-07 65.8 6.3 62 200-269 192-253 (646)
234 1j8m_F SRP54, signal recogniti 96.2 0.062 2.1E-06 51.4 13.3 90 219-311 98-193 (297)
235 2xxa_A Signal recognition part 96.2 0.034 1.2E-06 56.2 11.9 92 218-311 99-196 (433)
236 3iuy_A Probable ATP-dependent 96.2 0.013 4.5E-07 53.5 8.1 40 298-338 167-207 (228)
237 3tau_A Guanylate kinase, GMP k 96.1 0.003 1E-07 57.2 3.7 28 217-244 6-33 (208)
238 1qf9_A UMP/CMP kinase, protein 96.1 0.0041 1.4E-07 55.1 4.4 26 219-244 6-31 (194)
239 1zd8_A GTP:AMP phosphotransfer 96.1 0.0037 1.3E-07 57.4 4.2 27 218-244 6-32 (227)
240 1t6n_A Probable ATP-dependent 96.1 0.033 1.1E-06 50.4 10.6 23 220-242 52-74 (220)
241 1ukz_A Uridylate kinase; trans 96.1 0.0042 1.5E-07 55.7 4.5 27 218-244 14-40 (203)
242 1ak2_A Adenylate kinase isoenz 96.1 0.0055 1.9E-07 56.5 5.3 27 218-244 15-41 (233)
243 2yvu_A Probable adenylyl-sulfa 96.1 0.0037 1.3E-07 55.3 4.0 38 217-255 11-48 (186)
244 1zak_A Adenylate kinase; ATP:A 96.1 0.0033 1.1E-07 57.5 3.7 27 218-244 4-30 (222)
245 1m7g_A Adenylylsulfate kinase; 96.1 0.0041 1.4E-07 56.4 4.3 39 217-255 23-61 (211)
246 2wwf_A Thymidilate kinase, put 96.1 0.0035 1.2E-07 56.6 3.7 27 218-244 9-35 (212)
247 2ck3_D ATP synthase subunit be 96.1 0.031 1.1E-06 56.6 10.9 96 216-312 150-267 (482)
248 2qe7_A ATP synthase subunit al 96.0 0.016 5.5E-07 59.0 8.7 95 215-311 158-267 (502)
249 2pt5_A Shikimate kinase, SK; a 96.0 0.0048 1.6E-07 53.4 4.3 24 221-244 2-25 (168)
250 2xau_A PRE-mRNA-splicing facto 96.0 0.038 1.3E-06 60.3 12.2 25 219-243 109-133 (773)
251 2bbw_A Adenylate kinase 4, AK4 96.0 0.0042 1.4E-07 57.8 4.1 27 218-244 26-52 (246)
252 2ck3_A ATP synthase subunit al 96.0 0.019 6.4E-07 58.7 9.0 97 216-312 159-276 (510)
253 1tf7_A KAIC; homohexamer, hexa 96.0 0.011 3.8E-07 61.6 7.6 113 218-335 280-413 (525)
254 3tr0_A Guanylate kinase, GMP k 96.0 0.0044 1.5E-07 55.6 4.0 26 218-243 6-31 (205)
255 4eaq_A DTMP kinase, thymidylat 96.0 0.0089 3E-07 55.1 6.2 36 218-255 25-60 (229)
256 1nn5_A Similar to deoxythymidy 96.0 0.0042 1.4E-07 56.2 3.9 27 218-244 8-34 (215)
257 3fb4_A Adenylate kinase; psych 96.0 0.0038 1.3E-07 56.7 3.6 24 221-244 2-25 (216)
258 2ffh_A Protein (FFH); SRP54, s 96.0 0.083 2.8E-06 53.1 13.6 90 219-311 98-193 (425)
259 1zd9_A ADP-ribosylation factor 96.0 0.073 2.5E-06 46.7 12.0 23 220-242 23-45 (188)
260 1zj6_A ADP-ribosylation factor 96.0 0.081 2.8E-06 46.3 12.3 25 217-241 14-38 (187)
261 2jaq_A Deoxyguanosine kinase; 95.9 0.0045 1.5E-07 55.4 3.8 24 221-244 2-25 (205)
262 1ls1_A Signal recognition part 95.9 0.045 1.5E-06 52.4 11.0 92 218-312 97-194 (295)
263 3ney_A 55 kDa erythrocyte memb 95.9 0.0052 1.8E-07 55.1 4.1 27 217-243 17-43 (197)
264 3a00_A Guanylate kinase, GMP k 95.9 0.0044 1.5E-07 55.0 3.5 25 220-244 2-26 (186)
265 2j41_A Guanylate kinase; GMP, 95.9 0.0045 1.5E-07 55.6 3.6 26 218-243 5-30 (207)
266 1fx0_B ATP synthase beta chain 95.9 0.028 9.7E-07 57.1 9.7 97 216-313 162-281 (498)
267 2r9v_A ATP synthase subunit al 95.9 0.017 5.7E-07 59.0 8.0 95 216-312 172-281 (515)
268 1rif_A DAR protein, DNA helica 95.9 0.02 6.9E-07 54.3 8.2 52 196-254 112-163 (282)
269 2pl3_A Probable ATP-dependent 95.9 0.058 2E-06 49.4 11.1 40 298-338 171-211 (236)
270 1zu4_A FTSY; GTPase, signal re 95.9 0.08 2.8E-06 51.2 12.5 41 218-259 104-144 (320)
271 2j0s_A ATP-dependent RNA helic 95.8 0.024 8.4E-07 56.5 9.2 41 298-339 179-220 (410)
272 1fuu_A Yeast initiation factor 95.8 0.016 5.4E-07 57.4 7.7 35 220-254 59-95 (394)
273 1lvg_A Guanylate kinase, GMP k 95.8 0.0051 1.8E-07 55.2 3.6 25 219-243 4-28 (198)
274 1cke_A CK, MSSA, protein (cyti 95.8 0.0073 2.5E-07 55.1 4.7 25 220-244 6-30 (227)
275 2yhs_A FTSY, cell division pro 95.8 0.043 1.5E-06 56.1 10.7 27 218-244 292-318 (503)
276 3crm_A TRNA delta(2)-isopenten 95.8 0.0076 2.6E-07 58.3 4.9 33 219-255 5-37 (323)
277 3fho_A ATP-dependent RNA helic 95.8 0.014 4.7E-07 60.6 7.2 37 218-254 157-195 (508)
278 3nwj_A ATSK2; P loop, shikimat 95.8 0.0074 2.5E-07 56.4 4.7 26 219-244 48-73 (250)
279 2v6i_A RNA helicase; membrane, 95.8 0.022 7.6E-07 57.7 8.5 49 219-273 2-51 (431)
280 1odf_A YGR205W, hypothetical 3 95.8 0.013 4.4E-07 56.1 6.3 28 217-244 29-56 (290)
281 2va8_A SSO2462, SKI2-type heli 95.7 0.024 8.2E-07 61.4 9.2 35 219-254 46-81 (715)
282 3oaa_A ATP synthase subunit al 95.7 0.03 1E-06 57.0 9.1 95 216-312 159-268 (513)
283 1tf7_A KAIC; homohexamer, hexa 95.7 0.0099 3.4E-07 61.9 5.6 40 218-258 38-78 (525)
284 1r8s_A ADP-ribosylation factor 95.7 0.13 4.4E-06 43.6 12.0 22 221-242 2-23 (164)
285 2fwr_A DNA repair protein RAD2 95.7 0.019 6.5E-07 58.7 7.6 105 198-318 94-212 (472)
286 2bdt_A BH3686; alpha-beta prot 95.6 0.0051 1.8E-07 54.5 2.8 24 220-243 3-26 (189)
287 1e4v_A Adenylate kinase; trans 95.6 0.0077 2.6E-07 54.6 4.1 24 221-244 2-25 (214)
288 1upt_A ARL1, ADP-ribosylation 95.6 0.052 1.8E-06 46.4 9.3 24 219-242 7-30 (171)
289 3r20_A Cytidylate kinase; stru 95.6 0.01 3.5E-07 54.7 4.7 26 219-244 9-34 (233)
290 3fht_A ATP-dependent RNA helic 95.6 0.034 1.1E-06 55.4 9.0 27 218-244 63-90 (412)
291 2if2_A Dephospho-COA kinase; a 95.6 0.0091 3.1E-07 53.6 4.3 23 221-244 3-25 (204)
292 2h57_A ADP-ribosylation factor 95.6 0.042 1.4E-06 48.3 8.6 25 219-243 21-45 (190)
293 1wrb_A DJVLGB; RNA helicase, D 95.6 0.072 2.5E-06 49.3 10.7 40 299-338 175-218 (253)
294 3ly5_A ATP-dependent RNA helic 95.6 0.065 2.2E-06 50.1 10.4 40 298-338 201-241 (262)
295 3gmt_A Adenylate kinase; ssgci 95.6 0.045 1.5E-06 50.2 8.9 25 220-244 9-33 (230)
296 1wp9_A ATP-dependent RNA helic 95.5 0.034 1.2E-06 56.3 8.9 52 221-273 25-76 (494)
297 1s96_A Guanylate kinase, GMP k 95.5 0.0085 2.9E-07 54.8 3.9 27 218-244 15-41 (219)
298 1svm_A Large T antigen; AAA+ f 95.5 0.02 6.8E-07 56.8 6.8 28 217-244 167-194 (377)
299 3asz_A Uridine kinase; cytidin 95.5 0.0079 2.7E-07 54.3 3.6 27 218-244 5-31 (211)
300 2z0m_A 337AA long hypothetical 95.5 0.032 1.1E-06 53.8 8.2 24 219-242 31-54 (337)
301 2hf9_A Probable hydrogenase ni 95.5 0.025 8.6E-07 51.4 7.0 40 201-244 24-63 (226)
302 4e22_A Cytidylate kinase; P-lo 95.5 0.0094 3.2E-07 55.7 4.1 27 218-244 26-52 (252)
303 1znw_A Guanylate kinase, GMP k 95.5 0.009 3.1E-07 53.9 3.8 27 217-243 18-44 (207)
304 3foz_A TRNA delta(2)-isopenten 95.5 0.012 4E-07 56.5 4.7 27 218-244 9-35 (316)
305 3vr4_D V-type sodium ATPase su 95.4 0.031 1.1E-06 56.3 7.9 97 216-312 148-262 (465)
306 1htw_A HI0065; nucleotide-bind 95.4 0.0095 3.3E-07 51.4 3.7 27 217-243 31-57 (158)
307 3tqc_A Pantothenate kinase; bi 95.4 0.013 4.3E-07 56.9 5.0 27 218-244 91-117 (321)
308 3dz8_A RAS-related protein RAB 95.4 0.13 4.4E-06 45.2 11.3 24 220-243 24-47 (191)
309 3a8t_A Adenylate isopentenyltr 95.4 0.0089 3E-07 58.1 3.8 27 218-244 39-65 (339)
310 1z6g_A Guanylate kinase; struc 95.4 0.0091 3.1E-07 54.5 3.7 27 217-243 21-47 (218)
311 2h17_A ADP-ribosylation factor 95.4 0.073 2.5E-06 46.3 9.5 24 219-242 21-44 (181)
312 4a4z_A Antiviral helicase SKI2 95.4 0.026 9.1E-07 63.3 8.1 117 219-338 54-187 (997)
313 3mfy_A V-type ATP synthase alp 95.4 0.064 2.2E-06 55.2 10.0 95 216-313 224-339 (588)
314 1nrj_B SR-beta, signal recogni 95.3 0.099 3.4E-06 47.0 10.5 27 217-243 10-36 (218)
315 4edh_A DTMP kinase, thymidylat 95.3 0.03 1E-06 50.8 6.9 39 218-257 5-43 (213)
316 1fzq_A ADP-ribosylation factor 95.3 0.083 2.8E-06 46.1 9.6 25 218-242 15-39 (181)
317 3fmp_B ATP-dependent RNA helic 95.3 0.041 1.4E-06 56.3 8.7 27 217-243 129-156 (479)
318 2grj_A Dephospho-COA kinase; T 95.3 0.014 4.7E-07 52.2 4.3 26 219-244 12-37 (192)
319 3v9p_A DTMP kinase, thymidylat 95.3 0.023 7.7E-07 52.2 5.8 54 218-271 24-80 (227)
320 1uj2_A Uridine-cytidine kinase 95.2 0.011 3.7E-07 55.2 3.7 27 218-244 21-47 (252)
321 2wsm_A Hydrogenase expression/ 95.2 0.022 7.4E-07 51.6 5.7 46 195-244 10-55 (221)
322 2z83_A Helicase/nucleoside tri 95.2 0.025 8.6E-07 57.8 6.7 51 218-274 20-71 (459)
323 3exa_A TRNA delta(2)-isopenten 95.2 0.012 4.2E-07 56.5 4.0 26 219-244 3-28 (322)
324 2eyu_A Twitching motility prot 95.2 0.012 4E-07 55.4 3.8 28 217-244 23-50 (261)
325 1moz_A ARL1, ADP-ribosylation 95.2 0.044 1.5E-06 47.6 7.4 25 217-241 16-40 (183)
326 2xgj_A ATP-dependent RNA helic 95.2 0.11 3.7E-06 58.4 12.0 117 219-338 101-232 (1010)
327 3ake_A Cytidylate kinase; CMP 95.2 0.015 5E-07 52.2 4.2 24 221-244 4-27 (208)
328 1fx0_A ATP synthase alpha chai 95.1 0.025 8.6E-07 57.7 6.1 95 217-313 161-270 (507)
329 3oiy_A Reverse gyrase helicase 95.1 0.063 2.1E-06 53.7 9.2 23 219-241 36-58 (414)
330 2qt1_A Nicotinamide riboside k 95.1 0.0089 3E-07 53.8 2.6 26 218-243 20-45 (207)
331 2zj8_A DNA helicase, putative 95.1 0.043 1.5E-06 59.5 8.4 36 219-255 39-75 (720)
332 3b9q_A Chloroplast SRP recepto 95.1 0.033 1.1E-06 53.5 6.7 27 218-244 99-125 (302)
333 3l9o_A ATP-dependent RNA helic 95.1 0.032 1.1E-06 63.3 7.5 117 219-338 199-330 (1108)
334 3hjn_A DTMP kinase, thymidylat 95.0 0.06 2E-06 48.2 7.9 48 222-270 3-50 (197)
335 3gqb_B V-type ATP synthase bet 95.0 0.06 2.1E-06 54.2 8.5 97 216-312 144-265 (464)
336 1rj9_A FTSY, signal recognitio 95.0 0.024 8.1E-07 54.5 5.4 27 218-244 101-127 (304)
337 1uf9_A TT1252 protein; P-loop, 95.0 0.013 4.5E-07 52.3 3.4 26 217-242 6-31 (203)
338 3vr4_A V-type sodium ATPase ca 95.0 0.089 3.1E-06 54.3 9.8 93 216-312 229-343 (600)
339 2gk6_A Regulator of nonsense t 95.0 0.036 1.2E-06 59.0 7.3 38 200-244 183-220 (624)
340 3def_A T7I23.11 protein; chlor 95.0 0.058 2E-06 50.5 8.0 25 218-242 35-59 (262)
341 3ld9_A DTMP kinase, thymidylat 95.0 0.024 8.1E-07 51.9 5.1 30 216-245 18-47 (223)
342 1gtv_A TMK, thymidylate kinase 95.0 0.0069 2.4E-07 54.7 1.5 24 221-244 2-25 (214)
343 1xjc_A MOBB protein homolog; s 95.0 0.017 5.9E-07 50.3 3.9 36 219-255 4-39 (169)
344 1jjv_A Dephospho-COA kinase; P 95.0 0.013 4.4E-07 52.7 3.2 21 221-241 4-24 (206)
345 3aez_A Pantothenate kinase; tr 94.9 0.031 1.1E-06 53.9 6.1 28 217-244 88-115 (312)
346 2c61_A A-type ATP synthase non 94.9 0.047 1.6E-06 55.3 7.5 96 216-311 149-262 (469)
347 3lnc_A Guanylate kinase, GMP k 94.9 0.01 3.4E-07 54.6 2.4 26 218-243 26-52 (231)
348 1xti_A Probable ATP-dependent 94.9 0.053 1.8E-06 53.6 7.8 23 219-241 45-67 (391)
349 2v9p_A Replication protein E1; 94.9 0.018 6.1E-07 55.3 4.1 27 217-243 124-150 (305)
350 3iqw_A Tail-anchored protein t 94.9 0.08 2.7E-06 51.5 8.8 47 216-263 13-59 (334)
351 2p6r_A Afuhel308 helicase; pro 94.9 0.033 1.1E-06 60.1 6.7 35 219-255 40-75 (702)
352 3kw6_A 26S protease regulatory 94.9 0.074 2.5E-06 39.7 6.7 74 365-449 1-75 (78)
353 4tmk_A Protein (thymidylate ki 94.8 0.052 1.8E-06 49.3 7.0 52 219-271 3-55 (213)
354 1p9r_A General secretion pathw 94.8 0.026 8.9E-07 56.8 5.4 28 217-244 165-192 (418)
355 3p32_A Probable GTPase RV1496/ 94.8 0.055 1.9E-06 53.2 7.7 39 217-256 77-115 (355)
356 2og2_A Putative signal recogni 94.8 0.042 1.4E-06 54.0 6.8 27 218-244 156-182 (359)
357 1q3t_A Cytidylate kinase; nucl 94.8 0.025 8.5E-07 52.1 4.9 28 217-244 14-41 (236)
358 1vht_A Dephospho-COA kinase; s 94.8 0.021 7.3E-07 51.7 4.4 25 219-244 4-28 (218)
359 2jlq_A Serine protease subunit 94.8 0.037 1.3E-06 56.4 6.5 50 219-274 19-69 (451)
360 2oap_1 GSPE-2, type II secreti 94.8 0.032 1.1E-06 57.7 6.0 36 219-256 260-295 (511)
361 2b6h_A ADP-ribosylation factor 94.8 0.13 4.6E-06 45.3 9.4 25 217-241 27-51 (192)
362 2bov_A RAla, RAS-related prote 94.8 0.079 2.7E-06 47.0 7.9 23 220-242 15-37 (206)
363 1sq5_A Pantothenate kinase; P- 94.7 0.036 1.2E-06 53.4 5.9 28 217-244 78-105 (308)
364 1ltq_A Polynucleotide kinase; 94.7 0.017 5.7E-07 55.3 3.5 24 220-243 3-26 (301)
365 2f7s_A C25KG, RAS-related prot 94.7 0.28 9.5E-06 43.9 11.6 23 220-242 26-48 (217)
366 4hlc_A DTMP kinase, thymidylat 94.7 0.053 1.8E-06 48.8 6.6 49 220-270 3-51 (205)
367 2jeo_A Uridine-cytidine kinase 94.7 0.02 6.8E-07 53.2 3.8 28 217-244 23-50 (245)
368 1m8p_A Sulfate adenylyltransfe 94.7 0.04 1.4E-06 57.9 6.5 39 217-255 394-432 (573)
369 1f6b_A SAR1; gtpases, N-termin 94.7 0.061 2.1E-06 47.8 6.9 24 218-241 24-47 (198)
370 2qmh_A HPR kinase/phosphorylas 94.7 0.015 5E-07 52.0 2.6 26 218-243 33-58 (205)
371 1ksh_A ARF-like protein 2; sma 94.6 0.069 2.4E-06 46.6 7.1 26 217-242 16-41 (186)
372 2ewv_A Twitching motility prot 94.6 0.03 1E-06 55.5 5.2 29 217-245 134-162 (372)
373 3d3q_A TRNA delta(2)-isopenten 94.6 0.023 8E-07 55.3 4.3 25 220-244 8-32 (340)
374 3lv8_A DTMP kinase, thymidylat 94.6 0.057 1.9E-06 49.8 6.7 39 218-257 26-65 (236)
375 3tif_A Uncharacterized ABC tra 94.6 0.017 5.9E-07 53.4 3.2 27 217-243 29-55 (235)
376 1np6_A Molybdopterin-guanine d 94.6 0.025 8.5E-07 49.6 4.1 26 219-244 6-31 (174)
377 2ged_A SR-beta, signal recogni 94.6 0.031 1.1E-06 49.2 4.8 25 218-242 47-71 (193)
378 2h92_A Cytidylate kinase; ross 94.6 0.028 9.5E-07 50.9 4.5 26 219-244 3-28 (219)
379 2oca_A DAR protein, ATP-depend 94.6 0.063 2.2E-06 55.4 7.8 51 197-254 113-163 (510)
380 3clv_A RAB5 protein, putative; 94.6 0.042 1.4E-06 48.4 5.7 24 219-242 7-30 (208)
381 3eph_A TRNA isopentenyltransfe 94.6 0.025 8.6E-07 56.2 4.4 25 220-244 3-27 (409)
382 3iev_A GTP-binding protein ERA 94.6 0.37 1.3E-05 46.2 12.7 26 217-242 8-33 (308)
383 1g8f_A Sulfate adenylyltransfe 94.6 0.034 1.2E-06 57.2 5.6 48 196-245 374-421 (511)
384 2eyq_A TRCF, transcription-rep 94.5 0.37 1.3E-05 54.9 14.5 132 199-338 605-760 (1151)
385 2f6r_A COA synthase, bifunctio 94.5 0.026 9E-07 53.6 4.3 26 218-244 74-99 (281)
386 2pcj_A ABC transporter, lipopr 94.5 0.017 5.8E-07 52.9 2.8 26 218-243 29-54 (224)
387 3h1t_A Type I site-specific re 94.4 0.033 1.1E-06 58.8 5.3 47 196-244 177-223 (590)
388 2cbz_A Multidrug resistance-as 94.4 0.02 6.9E-07 52.9 3.2 28 217-244 29-56 (237)
389 4bas_A ADP-ribosylation factor 94.4 0.049 1.7E-06 48.1 5.6 25 218-242 16-40 (199)
390 2wjy_A Regulator of nonsense t 94.4 0.056 1.9E-06 59.1 7.0 38 200-244 359-396 (800)
391 3b85_A Phosphate starvation-in 94.4 0.02 6.9E-07 51.8 3.0 24 219-242 22-45 (208)
392 1gm5_A RECG; helicase, replica 94.4 0.19 6.4E-06 54.7 11.1 38 216-254 386-423 (780)
393 3dmq_A RNA polymerase-associat 94.4 0.22 7.5E-06 55.7 12.0 73 196-275 152-225 (968)
394 2whx_A Serine protease/ntpase/ 94.3 0.037 1.3E-06 58.7 5.4 50 218-273 185-235 (618)
395 1b0u_A Histidine permease; ABC 94.3 0.022 7.5E-07 53.6 3.2 27 217-243 30-56 (262)
396 1sgw_A Putative ABC transporte 94.3 0.021 7.2E-07 51.9 3.0 26 218-243 34-59 (214)
397 2krk_A 26S protease regulatory 94.3 0.059 2E-06 41.2 5.0 78 362-450 6-84 (86)
398 2gza_A Type IV secretion syste 94.2 0.027 9.3E-07 55.6 3.9 36 218-255 174-209 (361)
399 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.05 1.7E-06 53.0 5.7 81 219-309 171-251 (330)
400 2i4i_A ATP-dependent RNA helic 94.2 0.13 4.5E-06 51.1 9.0 18 219-236 52-69 (417)
401 2zu0_C Probable ATP-dependent 94.2 0.028 9.7E-07 52.9 3.8 26 217-242 44-69 (267)
402 3kta_A Chromosome segregation 94.2 0.03 1E-06 49.1 3.7 26 219-244 26-51 (182)
403 3cr8_A Sulfate adenylyltranfer 94.2 0.041 1.4E-06 57.4 5.2 28 217-244 367-394 (552)
404 1wf3_A GTP-binding protein; GT 94.2 1.7 5.7E-05 41.4 16.3 24 219-242 7-30 (301)
405 2db3_A ATP-dependent RNA helic 94.2 0.23 8E-06 50.0 10.8 42 297-338 202-245 (434)
406 2olj_A Amino acid ABC transpor 94.1 0.025 8.7E-07 53.1 3.2 27 217-243 48-74 (263)
407 2d2e_A SUFC protein; ABC-ATPas 94.1 0.029 9.8E-07 52.3 3.6 25 218-242 28-52 (250)
408 1g6h_A High-affinity branched- 94.1 0.024 8.3E-07 53.1 3.0 26 218-243 32-57 (257)
409 2onk_A Molybdate/tungstate ABC 94.1 0.03 1E-06 51.8 3.6 26 217-243 23-48 (240)
410 2pze_A Cystic fibrosis transme 94.1 0.025 8.7E-07 51.9 3.1 27 218-244 33-59 (229)
411 1yrb_A ATP(GTP)binding protein 94.1 0.055 1.9E-06 50.3 5.5 38 218-257 13-50 (262)
412 1tq4_A IIGP1, interferon-induc 94.1 0.035 1.2E-06 55.6 4.3 39 203-243 55-93 (413)
413 1ji0_A ABC transporter; ATP bi 94.1 0.025 8.6E-07 52.4 3.0 26 218-243 31-56 (240)
414 3gfo_A Cobalt import ATP-bindi 94.1 0.026 8.8E-07 53.5 3.1 27 217-243 32-58 (275)
415 1a7j_A Phosphoribulokinase; tr 94.1 0.021 7.3E-07 54.5 2.6 41 218-259 4-44 (290)
416 2ff7_A Alpha-hemolysin translo 94.0 0.026 8.9E-07 52.5 3.0 26 218-243 34-59 (247)
417 1mv5_A LMRA, multidrug resista 94.0 0.025 8.7E-07 52.4 3.0 27 217-243 26-52 (243)
418 2ihy_A ABC transporter, ATP-bi 94.0 0.034 1.2E-06 52.7 3.9 28 217-244 45-72 (279)
419 2ghi_A Transport protein; mult 94.0 0.028 9.4E-07 52.8 3.2 27 217-243 44-70 (260)
420 1vpl_A ABC transporter, ATP-bi 94.0 0.028 9.7E-07 52.6 3.2 27 217-243 39-65 (256)
421 2qi9_C Vitamin B12 import ATP- 94.0 0.027 9.4E-07 52.5 3.1 26 218-243 25-50 (249)
422 2ixe_A Antigen peptide transpo 94.0 0.028 9.7E-07 53.1 3.2 27 217-243 43-69 (271)
423 3fdi_A Uncharacterized protein 94.0 0.042 1.4E-06 49.4 4.2 26 219-244 6-31 (201)
424 2ocp_A DGK, deoxyguanosine kin 93.9 0.03 1E-06 51.7 3.3 26 219-244 2-27 (241)
425 3bfv_A CAPA1, CAPB2, membrane 93.9 0.13 4.4E-06 48.5 7.7 59 200-259 63-122 (271)
426 4g1u_C Hemin import ATP-bindin 93.9 0.028 9.6E-07 52.9 3.1 27 217-243 35-61 (266)
427 3fvq_A Fe(3+) IONS import ATP- 93.9 0.03 1E-06 55.0 3.4 27 217-243 28-54 (359)
428 3i5x_A ATP-dependent RNA helic 93.9 0.24 8.1E-06 51.7 10.6 19 218-236 110-128 (563)
429 1yks_A Genome polyprotein [con 93.9 0.048 1.6E-06 55.4 4.9 50 218-273 7-57 (440)
430 2f9l_A RAB11B, member RAS onco 93.9 0.032 1.1E-06 49.6 3.2 22 221-242 7-28 (199)
431 3gqb_A V-type ATP synthase alp 93.8 0.089 3E-06 54.1 6.7 93 216-312 218-332 (578)
432 2yz2_A Putative ABC transporte 93.8 0.031 1.1E-06 52.7 3.2 27 217-243 31-57 (266)
433 1oix_A RAS-related protein RAB 93.8 0.031 1.1E-06 49.5 3.0 23 221-243 31-53 (191)
434 2it1_A 362AA long hypothetical 93.8 0.038 1.3E-06 54.5 3.8 27 217-243 27-53 (362)
435 2yyz_A Sugar ABC transporter, 93.7 0.037 1.3E-06 54.4 3.7 27 217-243 27-53 (359)
436 2nq2_C Hypothetical ABC transp 93.7 0.031 1.1E-06 52.2 3.0 27 218-244 30-56 (253)
437 3rlf_A Maltose/maltodextrin im 93.7 0.038 1.3E-06 54.7 3.8 27 217-243 27-53 (381)
438 2dyk_A GTP-binding protein; GT 93.7 0.037 1.3E-06 46.9 3.3 22 221-242 3-24 (161)
439 1z47_A CYSA, putative ABC-tran 93.7 0.037 1.2E-06 54.4 3.6 26 218-243 40-65 (355)
440 2xzl_A ATP-dependent helicase 93.7 0.069 2.4E-06 58.4 6.1 26 219-244 375-400 (802)
441 2obl_A ESCN; ATPase, hydrolase 93.7 0.066 2.3E-06 52.4 5.4 36 217-254 69-104 (347)
442 2f1r_A Molybdopterin-guanine d 93.7 0.023 7.9E-07 49.7 1.9 25 220-244 3-27 (171)
443 3tbk_A RIG-I helicase domain; 93.7 0.39 1.3E-05 49.5 11.7 25 219-243 19-43 (555)
444 3cio_A ETK, tyrosine-protein k 93.7 0.13 4.4E-06 49.2 7.3 57 201-258 86-143 (299)
445 3sop_A Neuronal-specific septi 93.7 0.035 1.2E-06 52.4 3.3 24 221-244 4-27 (270)
446 1v43_A Sugar-binding transport 93.6 0.04 1.4E-06 54.4 3.8 27 217-243 35-61 (372)
447 2zpa_A Uncharacterized protein 93.5 0.45 1.5E-05 50.4 11.7 97 220-339 193-289 (671)
448 2dpy_A FLII, flagellum-specifi 93.5 0.08 2.7E-06 53.6 5.8 39 216-256 154-192 (438)
449 3thx_A DNA mismatch repair pro 93.5 0.011 3.8E-07 65.4 -0.5 23 218-240 661-683 (934)
450 1z2a_A RAS-related protein RAB 93.5 0.041 1.4E-06 46.9 3.2 23 220-242 6-28 (168)
451 3d31_A Sulfate/molybdate ABC t 93.5 0.034 1.2E-06 54.5 2.9 27 217-243 24-50 (348)
452 3io3_A DEHA2D07832P; chaperone 93.5 0.1 3.5E-06 51.0 6.4 44 216-259 15-59 (348)
453 1g29_1 MALK, maltose transport 93.5 0.041 1.4E-06 54.4 3.6 26 218-243 28-53 (372)
454 2wji_A Ferrous iron transport 93.4 0.041 1.4E-06 47.3 3.1 23 220-242 4-26 (165)
455 3tmk_A Thymidylate kinase; pho 93.4 0.049 1.7E-06 49.5 3.7 27 218-244 4-30 (216)
456 2zej_A Dardarin, leucine-rich 93.4 0.035 1.2E-06 48.7 2.6 21 221-241 4-24 (184)
457 1kao_A RAP2A; GTP-binding prot 93.4 0.045 1.5E-06 46.4 3.3 22 221-242 5-26 (167)
458 3end_A Light-independent proto 93.4 0.1 3.4E-06 50.0 6.1 56 204-260 26-81 (307)
459 3tqf_A HPR(Ser) kinase; transf 93.4 0.044 1.5E-06 47.7 3.1 25 218-242 15-39 (181)
460 2wv9_A Flavivirin protease NS2 93.4 0.13 4.4E-06 55.1 7.4 50 218-273 240-290 (673)
461 2yv5_A YJEQ protein; hydrolase 93.3 0.056 1.9E-06 51.9 4.1 24 219-243 165-188 (302)
462 1f2t_A RAD50 ABC-ATPase; DNA d 93.3 0.049 1.7E-06 46.3 3.3 25 219-243 23-47 (149)
463 1x6v_B Bifunctional 3'-phospho 93.3 0.064 2.2E-06 56.6 4.8 37 218-255 51-87 (630)
464 2ce2_X GTPase HRAS; signaling 93.3 0.043 1.5E-06 46.5 2.9 23 221-243 5-27 (166)
465 2nzj_A GTP-binding protein REM 93.3 0.046 1.6E-06 47.0 3.1 23 220-242 5-27 (175)
466 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.05 1.7E-06 46.9 3.3 23 220-242 8-30 (177)
467 3nh6_A ATP-binding cassette SU 93.2 0.039 1.3E-06 53.0 2.8 27 217-243 78-104 (306)
468 1u8z_A RAS-related protein RAL 93.2 0.05 1.7E-06 46.2 3.2 23 220-242 5-27 (168)
469 1ek0_A Protein (GTP-binding pr 93.2 0.05 1.7E-06 46.4 3.2 23 221-243 5-27 (170)
470 2qm8_A GTPase/ATPase; G protei 93.2 0.062 2.1E-06 52.5 4.2 28 217-244 53-80 (337)
471 2axn_A 6-phosphofructo-2-kinas 93.2 0.054 1.8E-06 56.2 4.0 27 218-244 34-60 (520)
472 2bbs_A Cystic fibrosis transme 93.2 0.042 1.4E-06 52.4 2.9 28 217-244 62-89 (290)
473 1z08_A RAS-related protein RAB 93.2 0.052 1.8E-06 46.4 3.3 23 220-242 7-29 (170)
474 2pjz_A Hypothetical protein ST 93.2 0.044 1.5E-06 51.5 3.0 25 219-243 30-54 (263)
475 1z0j_A RAB-22, RAS-related pro 93.2 0.052 1.8E-06 46.3 3.3 24 220-243 7-30 (170)
476 1p5z_B DCK, deoxycytidine kina 93.1 0.023 7.7E-07 53.3 1.0 27 218-244 23-49 (263)
477 3o47_A ADP-ribosylation factor 93.1 0.28 9.4E-06 47.6 8.8 21 221-241 167-187 (329)
478 2ykg_A Probable ATP-dependent 93.1 0.5 1.7E-05 50.6 11.7 25 219-243 28-52 (696)
479 4dhe_A Probable GTP-binding pr 93.1 0.31 1.1E-05 43.7 8.7 25 218-242 28-52 (223)
480 4dzz_A Plasmid partitioning pr 93.1 0.073 2.5E-06 47.4 4.3 84 221-310 3-87 (206)
481 3la6_A Tyrosine-protein kinase 93.1 0.2 6.9E-06 47.5 7.5 59 200-259 73-132 (286)
482 3sqw_A ATP-dependent RNA helic 93.1 0.49 1.7E-05 49.6 11.3 19 218-236 59-77 (579)
483 2o8b_B DNA mismatch repair pro 93.0 0.02 6.7E-07 64.3 0.4 21 219-239 789-809 (1022)
484 1oxx_K GLCV, glucose, ABC tran 93.0 0.035 1.2E-06 54.6 2.2 27 217-243 29-55 (353)
485 1ky3_A GTP-binding protein YPT 93.0 0.055 1.9E-06 46.8 3.3 25 219-243 8-32 (182)
486 1c1y_A RAS-related protein RAP 93.0 0.055 1.9E-06 46.0 3.2 22 221-242 5-26 (167)
487 2lkc_A Translation initiation 93.0 0.068 2.3E-06 46.1 3.9 25 218-242 7-31 (178)
488 3hdt_A Putative kinase; struct 93.0 0.082 2.8E-06 48.3 4.5 26 219-244 14-39 (223)
489 1u0l_A Probable GTPase ENGC; p 93.0 0.062 2.1E-06 51.5 3.8 25 219-243 169-193 (301)
490 1g16_A RAS-related protein SEC 93.0 0.051 1.8E-06 46.4 2.9 22 221-242 5-26 (170)
491 3gd7_A Fusion complex of cysti 92.9 0.054 1.9E-06 53.9 3.4 27 217-243 45-71 (390)
492 3o8b_A HCV NS3 protease/helica 92.9 0.14 4.7E-06 54.5 6.7 22 218-239 231-252 (666)
493 1m2o_B GTP-binding protein SAR 92.9 0.056 1.9E-06 47.7 3.2 25 218-242 22-46 (190)
494 2erx_A GTP-binding protein DI- 92.9 0.056 1.9E-06 46.2 3.1 22 221-242 5-26 (172)
495 1r2q_A RAS-related protein RAB 92.9 0.059 2E-06 45.9 3.2 23 220-242 7-29 (170)
496 2www_A Methylmalonic aciduria 92.9 0.13 4.5E-06 50.3 6.1 26 219-244 74-99 (349)
497 2gks_A Bifunctional SAT/APS ki 92.8 0.089 3E-06 54.9 5.0 38 217-255 370-407 (546)
498 2gj8_A MNME, tRNA modification 92.8 0.053 1.8E-06 47.0 2.9 24 219-242 4-27 (172)
499 3q85_A GTP-binding protein REM 92.8 0.057 1.9E-06 46.1 3.1 21 221-241 4-24 (169)
500 3bc1_A RAS-related protein RAB 92.8 0.06 2.1E-06 47.0 3.2 23 220-242 12-34 (195)
No 1
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.7e-32 Score=263.27 Aligned_cols=252 Identities=18% Similarity=0.174 Sum_probs=205.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
+.|.||+++++.|..+|...+..+.+++++|+||||||||++++.+++++... ..+.++++||....+...++.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 44899999999999999999999999999999999999999999999999632 257899999999999999999
Q ss_pred HHHHHhcCCC--CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhH
Q psy200 268 TIVNELKLKP--GGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTD 345 (490)
Q Consensus 268 ~i~~~l~~~~--~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~ 345 (490)
.|+.+|.... .+.....+...|.......++++||||||+|.|. .|+.|+.+++|.....+++++|+++|..++++
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 9999996542 2233444444444322234678999999999998 78999999998766788999999999988877
Q ss_pred h-hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCC---------------------------------CCCCH
Q psy200 346 R-MLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKF---------------------------------NMFNA 391 (490)
Q Consensus 346 ~-l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~---------------------------------~~~~~ 391 (490)
+ +.+++++||+. ..|.|.||+.+|+.+|+.+++...... ..+++
T Consensus 178 ~~L~~~v~SR~~~--~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (318)
T 3te6_A 178 EQINIMPSLKAHF--TEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINN 255 (318)
T ss_dssp HHHHTCHHHHTTE--EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCH
T ss_pred hhcchhhhccCCc--eEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCH
Confidence 5 46788999864 479999999999999999999874211 14799
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhcccc----CCcccccCHHHHHHHHHHhcc
Q psy200 392 SALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKE----NGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 392 ~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~----~~~~~~It~~~v~~a~~~~~~ 449 (490)
++|+.++++++..+||+|.||++|++|+++|+.+... ......|+.+++.+++++++.
T Consensus 256 ~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~~~ 317 (318)
T 3te6_A 256 KITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEAIN 317 (318)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHHHC
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999875221 112457888888888887653
No 2
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.96 E-value=2.3e-28 Score=247.82 Aligned_cols=275 Identities=24% Similarity=0.359 Sum_probs=225.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc-----CCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK-----DAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
+.|+||+++++.+..++...+....+.+++|+||+|+|||++++.+++.+... .++.+++++|....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 78999999999999999877666778899999999999999999999988432 2578999999999999999999
Q ss_pred HHHHhcCC--CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc--CHHHHHHhHhCCCC-C-CCcEEEEEecCCCC
Q psy200 269 IVNELKLK--PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR--KQTILYTIFEWPSI-P-GSKLVLVGVANALD 342 (490)
Q Consensus 269 i~~~l~~~--~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~--~~~~L~~l~~~~~~-~-~~~vilI~~tn~~~ 342 (490)
++..++.. ..+.+..++.+.+...+...+++++|||||+|.+... .++.|+.++++... . ..++++|+++|..+
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 99998753 3345567777777777766677999999999999877 67888888876532 2 66889999999776
Q ss_pred hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy200 343 LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLT 422 (490)
Q Consensus 343 ~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a 422 (490)
+...+.+.+.+||.. ..+.|+||+.+++..++..++........+++++++.+++......|++|.++++|+.|+..+
T Consensus 179 ~~~~l~~~l~~r~~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 179 FVENLEPRVKSSLGE--VELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp TSSSSCHHHHTTTTS--EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCC--eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 667778889999863 379999999999999999998753224568889999999844444599999999999999998
Q ss_pred HhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhc
Q psy200 423 YDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKS 479 (490)
Q Consensus 423 ~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~ 479 (490)
...+ ...|+.+++..++..+..... ...+.+++.+++.+|+|++.+..
T Consensus 257 ~~~~-----~~~i~~~~v~~a~~~~~~~~~----~~~~~~l~~~~~~~l~a~~~~~~ 304 (387)
T 2v1u_A 257 ERRR-----EERVRREHVYSARAEIERDRV----SEVVRTLPLHAKLVLLSIMMLED 304 (387)
T ss_dssp HHTT-----CSCBCHHHHHHHHHHHHHHHH----HHHHHSSCHHHHHHHHHHHHHSS
T ss_pred HHcC-----CCCcCHHHHHHHHHHHhhchH----HHHHHcCCHHHHHHHHHHHHHhc
Confidence 8776 568999999999998865544 56789999999999999997765
No 3
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.95 E-value=3.5e-26 Score=232.02 Aligned_cols=273 Identities=23% Similarity=0.271 Sum_probs=220.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCC--eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSG--SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~--~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
+.++||+++++.|..++...+.+..+. +++|+||+|+|||++++.+++.+....++.+++++|....+...++..++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 679999999999999999877666666 899999999999999999999885332578999999998888999999999
Q ss_pred HhcCCC--CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCC---CcEEEEEecCCCChhHh
Q psy200 272 ELKLKP--GGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPG---SKLVLVGVANALDLTDR 346 (490)
Q Consensus 272 ~l~~~~--~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~---~~vilI~~tn~~~~~~~ 346 (490)
.++... .+.+...+.+.+...+...+++.||||||+|++....+..|..+++. ... .++.+|++++..++...
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~--~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE--ADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC--HHHHSSCCEEEEEEESSTHHHHT
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh--CCCCCcCCEEEEEEECCchHHHH
Confidence 886532 34456777777777776667789999999999944333444443321 112 57888888887766677
Q ss_pred hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHh------hCCHHHHHHHHHHHHH
Q psy200 347 MLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAV------SGDIRKAIDITNHLID 420 (490)
Q Consensus 347 l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~------~Gd~r~ai~ll~~a~~ 420 (490)
+.+++.+||.. ..+.|+|++.+++.+++..++...+....+++++++.+++..... .|++|.++++|+.|+.
T Consensus 175 l~~~~~~r~~~--~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGK--YVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTT--CEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCC--ceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 78888888863 369999999999999999998763223468999999999843333 7999999999999999
Q ss_pred HHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhc
Q psy200 421 LTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKS 479 (490)
Q Consensus 421 ~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~ 479 (490)
.|..++ ...|+.+++..++..+..... ...+..|+.+++.+|++|+.+.+
T Consensus 253 ~a~~~~-----~~~i~~~~v~~~~~~~~~~~~----~~~l~~l~~~~~~~L~~l~~~~~ 302 (389)
T 1fnn_A 253 AAQQNG-----RKHIAPEDVRKSSKEVLFGIS----EEVLIGLPLHEKLFLLAIVRSLK 302 (389)
T ss_dssp HHHHTT-----CSSCCHHHHHHHHHHHSCCCC----HHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHhC-----CCCcCHHHHHHHHHHHhhhhH----HHHHHcCCHHHHHHHHHHHHHHh
Confidence 998877 568999999999999886666 67889999999999999998763
No 4
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.6e-26 Score=234.28 Aligned_cols=263 Identities=24% Similarity=0.293 Sum_probs=215.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------C-CceEEEEeccCCC-CHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------D-AFKTIYINCNSVR-NAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~-~~~~~~v~~~~~~-~~~~l 265 (490)
++|+||+++++.|..++..++....+++++|+||+|+|||++++.+++.+... . ++.+++++|.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 78999999999999999988777778899999999999999999999987422 1 5789999999888 88999
Q ss_pred HHHHHHHhcC---CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-HHH-HHHhHhCCCCCCCcEEEEEecCC
Q psy200 266 YETIVNELKL---KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-QTI-LYTIFEWPSIPGSKLVLVGVANA 340 (490)
Q Consensus 266 ~~~i~~~l~~---~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-~~~-L~~l~~~~~~~~~~vilI~~tn~ 340 (490)
+..++..+.. ...+.+...+.+.+.+.+... +. ||||||+|++.... ++. +..++++. .++.+|+++|.
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~-vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~ 173 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RA-IIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CE-EEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSS
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CC-EEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECC
Confidence 9999988832 223344566666666666543 23 99999999998763 777 88887765 67889999987
Q ss_pred CChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy200 341 LDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLID 420 (490)
Q Consensus 341 ~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~ 420 (490)
.++...+.+.+.+||.. .+.|+|++.+++.+++..++........+++++++.+++......||+|.++++|+.|+.
T Consensus 174 ~~~~~~l~~~l~sr~~~---~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGP---SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTTSCHHHHHTCCC---EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCC---eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 76667778888888863 899999999999999999987422235688999999998555555999999999999998
Q ss_pred HHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHH
Q psy200 421 LTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLL 476 (490)
Q Consensus 421 ~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~ 476 (490)
.|. + ...|+.+++..++.+...... ...+..|+.+++.+|++|+.
T Consensus 251 ~a~--~-----~~~i~~~~v~~~~~~~~~~~~----~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 251 LAS--G-----GGIIRKEHVDKAIVDYEQERL----IEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp HTT--S-----SSCCCHHHHHHHHHHHHHHHH----HHHHHSSCHHHHHHHHHHHT
T ss_pred Hhc--C-----CCccCHHHHHHHHHHHhcchH----HHHHHcCCHHHHHHHHHHHH
Confidence 887 3 458999999999999875544 56778999999999999986
No 5
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.95 E-value=2.1e-26 Score=233.02 Aligned_cols=276 Identities=24% Similarity=0.368 Sum_probs=217.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC--CceEEEEeccCCCCHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD--AFKTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~--~~~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
+.|+||+++++.|..++...+....+..++|+||+|+|||++++.+++.+.... ++.+++++|....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 779999999999999998766667788999999999999999999999875322 578999999888788888888888
Q ss_pred HhcCCC--CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-HHHHHHhHhCC-CCCCCcEEEEEecCCCChhHhh
Q psy200 272 ELKLKP--GGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-QTILYTIFEWP-SIPGSKLVLVGVANALDLTDRM 347 (490)
Q Consensus 272 ~l~~~~--~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-~~~L~~l~~~~-~~~~~~vilI~~tn~~~~~~~l 347 (490)
.++... .+.+..+..+.+.+.+...++++||||||+|++.... ++.+..++.+. .....++.+|++++..++...+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 776532 3345667677777777666678999999999997553 45555554432 1145678888899877666777
Q ss_pred hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccc
Q psy200 348 LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVK 427 (490)
Q Consensus 348 ~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~ 427 (490)
.+.+.+||.. ..+.|+|++.+++.+++.+++........+++++++.+++......|+++.++++|+.++..+..++
T Consensus 180 ~~~~~~r~~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~- 256 (386)
T 2qby_A 180 DPRVKSSLSE--EEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK- 256 (386)
T ss_dssp TTHHHHTTTT--EEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHhccCCC--eeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-
Confidence 7788888753 4799999999999999999887543345689999999998544444999999999999999988777
Q ss_pred cCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcC
Q psy200 428 ENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSR 480 (490)
Q Consensus 428 ~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~ 480 (490)
...|+.+++..++..+..... ...+..++.+++.+|+||+.+.+.
T Consensus 257 ----~~~i~~~~v~~a~~~~~~~~~----~~~~~~l~~~~~~il~ai~~~~~~ 301 (386)
T 2qby_A 257 ----DTKVKEEYVYMAKEEIERDRV----RDIILTLPFHSKLVLMAVVSISSE 301 (386)
T ss_dssp ----CSSCCHHHHHHHHHHHHHHHH----HHHHHTSCHHHHHHHHHHHHHC--
T ss_pred ----CCccCHHHHHHHHHHHhhchH----HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 568999999999998865444 466789999999999999976543
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.93 E-value=1.5e-24 Score=221.83 Aligned_cols=274 Identities=17% Similarity=0.221 Sum_probs=210.4
Q ss_pred CCCCChHHHHHHHHHHH-Hhhhcc--CCCCeEEE--ECCCCCcHHHHHHHHHHHhhhc-----CCceEEEEeccCCCCHH
Q psy200 194 CELPGREVQLEGIRQFL-LGHVNN--ETSGSMYI--SGPPGTGKSASLNLLVSRAEIK-----DAFKTIYINCNSVRNAA 263 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L-~~~~~~--~~~~~ill--~GppGtGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~~~~~ 263 (490)
+.|+||+++++.|..++ .....+ ..+..++| +|++|+|||++++.+++.+... .++.+++++|....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999999 766555 46778999 9999999999999999987532 25788999998888889
Q ss_pred HHHHHHHHHhcCCC--CCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc---CHHHHHHhHhCC---CCCC--CcEE
Q psy200 264 SVYETIVNELKLKP--GGKSERHQLGAILKYFDTKHKSILLILDEIDALESR---KQTILYTIFEWP---SIPG--SKLV 333 (490)
Q Consensus 264 ~l~~~i~~~l~~~~--~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~---~~~~L~~l~~~~---~~~~--~~vi 333 (490)
.++..++..++... .+.+...+...+...+...++++||||||+|++... .++.+..++.+. ...+ .++.
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 99999999987643 234556666777666654467999999999999763 455555444332 1113 7888
Q ss_pred EEEecCCCChhHhhh---HHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhh---CC
Q psy200 334 LVGVANALDLTDRML---PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVS---GD 407 (490)
Q Consensus 334 lI~~tn~~~~~~~l~---~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~---Gd 407 (490)
+|++++..++...+. +.+.+++. ..+.|.|++.+++.+++.+++...+....+++++++.+++...... |+
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~---~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIG---FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCS---EEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcC---CeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCc
Confidence 888887666666666 77777775 3499999999999999998876543334588999999998443333 99
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc-cCccccccccccCCCChHhHHHHHHHHHHhc
Q psy200 408 IRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY-CTSQSLHCSKDEDSFPLQQKLALASLLLLKS 479 (490)
Q Consensus 408 ~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~-~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~ 479 (490)
++.+++++..++..+..++ ...|+.+++..++.... .... ...+..||.+++.+|++++.+..
T Consensus 259 p~~~~~l~~~a~~~a~~~~-----~~~i~~~~v~~~~~~~~~~~~~----~~~l~~l~~~~~~~l~aia~l~~ 322 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMG-----RDSLSEDLVRKAVSENEAASIQ----THELEALSIHELIILRLIAEATL 322 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----CSSCCHHHHHHHHHHC----------CCSSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHhccchH----HHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999998888777 56899999999998776 4444 57788999999999999997653
No 7
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-22 Score=201.03 Aligned_cols=220 Identities=17% Similarity=0.214 Sum_probs=167.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.++++++|.+.+...+. -..++++|||||||||||++|++++++++ ..++.++++.+.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~----~~f~~v~~s~l~s--- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD----CKFIRVSGAELVQ--- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT----CEEEEEEGGGGSC---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC----CCceEEEhHHhhc---
Confidence 7899999999999987765332 23678999999999999999999999976 7889999887643
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~ 331 (490)
.+.|.+...+.+.|..+.. ..|+||||||+|.+.... +..+..++.. .......
T Consensus 221 -----------k~vGese~~vr~lF~~Ar~--~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -----------KYIGEGSRMVRELFVMARE--HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -----------SSTTHHHHHHHHHHHHHHH--TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -----------cccchHHHHHHHHHHHHHH--hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 6777888888888887766 569999999999997542 1233333322 1234568
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DI 408 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~ 408 (490)
++||++||+. +.+++++.+ ||. ..|.|+.++.++..+||+.++...... .+..++.|++ .+.| ..
T Consensus 288 V~vIaATNrp---d~LDpAllRpGRfD---~~I~i~lPd~~~R~~Il~~~~~~~~l~---~dvdl~~lA~---~t~G~SG 355 (405)
T 4b4t_J 288 IKIIMATNRL---DILDPALLRPGRID---RKIEFPPPSVAARAEILRIHSRKMNLT---RGINLRKVAE---KMNGCSG 355 (405)
T ss_dssp EEEEEEESCS---SSSCHHHHSTTSSC---CEEECCCCCHHHHHHHHHHHHTTSBCC---SSCCHHHHHH---HCCSCCH
T ss_pred eEEEeccCCh---hhCCHhHcCCCcCc---eEEEcCCcCHHHHHHHHHHHhcCCCCC---ccCCHHHHHH---HCCCCCH
Confidence 9999999964 456677765 777 589999999999999999888765222 2223677777 3344 33
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
..+-++|..|...|.+++ ...|+.+||..|+.++...
T Consensus 356 ADi~~l~~eA~~~Air~~-----~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 356 ADVKGVCTEAGMYALRER-----RIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-----CCCcCHHHHHHHHHHHhCc
Confidence 445568999999998887 6789999999999988653
No 8
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.7e-22 Score=198.94 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=167.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.++++++|.+.+...+. ...++++|||||||||||++|+++|++++ ..++.++++.+.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~----~~fi~v~~s~l~s--- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS----ATFLRIVGSELIQ--- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT----CEEEEEESGGGCC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC----CCEEEEEHHHhhh---
Confidence 7899999999999998765432 23678999999999999999999999986 7888998876633
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~ 331 (490)
.+.|.+...+...|..+.. ..|+||||||+|.+...+ ...+..++.. .......
T Consensus 255 -----------k~vGesek~ir~lF~~Ar~--~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 255 -----------KYLGDGPRLCRQIFKVAGE--NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp -----------SSSSHHHHHHHHHHHHHHH--TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred -----------ccCchHHHHHHHHHHHHHh--cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 6777788888888877665 569999999999997542 1233333321 1234568
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIR 409 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r 409 (490)
++||++||+. +.+++++.+ ||. ..|.|+.++.++..+||+.++...... .+..++.|++...++ .-.
T Consensus 322 ViVIaATNrp---d~LDpALlRpGRfD---~~I~v~lPd~~~R~~Il~~~l~~~~l~---~dvdl~~LA~~T~Gf--SGA 390 (437)
T 4b4t_I 322 VKVIMATNKI---ETLDPALIRPGRID---RKILFENPDLSTKKKILGIHTSKMNLS---EDVNLETLVTTKDDL--SGA 390 (437)
T ss_dssp EEEEEEESCS---TTCCTTSSCTTTEE---EEECCCCCCHHHHHHHHHHHHTTSCBC---SCCCHHHHHHHCCSC--CHH
T ss_pred EEEEEeCCCh---hhcCHHHhcCCcee---EEEEcCCcCHHHHHHHHHHHhcCCCCC---CcCCHHHHHHhCCCC--CHH
Confidence 9999999964 556677765 776 589999999999999999888765211 122367777633222 234
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
.+-++|..|...|.+++ ...|+.+||..|+..+.....
T Consensus 391 DI~~l~~eA~~~Air~~-----~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRER-----RMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp HHHHHHHHHHHHHHHTT-----CSCBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcC-----CCccCHHHHHHHHHHHhCCCC
Confidence 55578999999998888 678999999999998876544
No 9
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.88 E-value=7.8e-21 Score=189.25 Aligned_cols=242 Identities=17% Similarity=0.158 Sum_probs=183.6
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhc-cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEecc
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVN-NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~-~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~ 257 (490)
.|.++|.+... ++++|++..++.+..++..... .....+++|+||+|||||++|+++++.+. ..++.++|.
T Consensus 18 ~~~~~~~p~~~----~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~----~~~~~~~~~ 89 (338)
T 3pfi_A 18 TYETSLRPSNF----DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS----ANIKTTAAP 89 (338)
T ss_dssp -----CCCCSG----GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT----CCEEEEEGG
T ss_pred hhhhccCCCCH----HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEecch
Confidence 56677777766 8899999999999999986533 34567899999999999999999998864 568889887
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC----------
Q psy200 258 SVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI---------- 327 (490)
Q Consensus 258 ~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~---------- 327 (490)
..... ..+. ..+.......+|||||||.+....+..|+..++....
T Consensus 90 ~~~~~--------------------~~~~----~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~ 145 (338)
T 3pfi_A 90 MIEKS--------------------GDLA----AILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAA 145 (338)
T ss_dssp GCCSH--------------------HHHH----HHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------C
T ss_pred hccch--------------------hHHH----HHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccc
Confidence 65322 2222 2222234567999999999998888888887764321
Q ss_pred -----CCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q psy200 328 -----PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVA 402 (490)
Q Consensus 328 -----~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~ 402 (490)
...++++|++||.. ..+.+.+.+||+ ..+.|.+++.+++..++.+.+... ...+++++++.+++
T Consensus 146 ~~~~~~~~~~~~i~atn~~---~~l~~~L~~R~~---~~i~l~~~~~~e~~~il~~~~~~~--~~~~~~~~~~~l~~--- 214 (338)
T 3pfi_A 146 QTIKIDLPKFTLIGATTRA---GMLSNPLRDRFG---MQFRLEFYKDSELALILQKAALKL--NKTCEEKAALEIAK--- 214 (338)
T ss_dssp CCCCCCCCCCEEEEEESCG---GGSCHHHHTTCS---EEEECCCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHH---
T ss_pred cceecCCCCeEEEEeCCCc---cccCHHHHhhcC---EEeeCCCcCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---
Confidence 11248899999853 446788999986 489999999999999999988876 35689999999987
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHH
Q psy200 403 AVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLL 477 (490)
Q Consensus 403 ~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~ 477 (490)
.+.|++|.+.++++++...+...+ ...|+.+++..++...... ...+...++.++.+++..
T Consensus 215 ~~~G~~r~l~~~l~~~~~~a~~~~-----~~~i~~~~~~~~~~~~~~~---------~~~l~~~e~~~l~~l~~~ 275 (338)
T 3pfi_A 215 RSRSTPRIALRLLKRVRDFADVND-----EEIITEKRANEALNSLGVN---------ELGFDAMDLRYLELLTAA 275 (338)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHTT-----CSEECHHHHHHHHHHHTCC---------TTCCCHHHHHHHHHHHHS
T ss_pred HHCcCHHHHHHHHHHHHHHHHhhc-----CCccCHHHHHHHHHHhCCc---------ccCCCHHHHHHHHHHHHh
Confidence 789999999999999998888776 5689999999998774321 234566667788888765
No 10
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.1e-21 Score=194.90 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=166.2
Q ss_pred CCCCChHHHHHHHHHHHHhhh---------ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV---------NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~---------~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.++++++|.+.+...+ .-..++++|||||||||||++|+++|++++ ..++.++++.+.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~----~~fi~vs~s~L~s--- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD----ATFIRVIGSELVQ--- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT----CEEEEEEGGGGCC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC----CCeEEEEhHHhhc---
Confidence 789999999999998765432 224789999999999999999999999986 7889998887643
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~ 331 (490)
.+.|.+...+...|..+.. ..|+||||||+|.+...+ ...+..++.. .......
T Consensus 282 -----------k~vGesek~ir~lF~~Ar~--~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 -----------KYVGEGARMVRELFEMART--KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -----------CSSSHHHHHHHHHHHHHHH--TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -----------ccCCHHHHHHHHHHHHHHh--cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 6777888888888887665 569999999999997542 1222233221 1235568
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DI 408 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~ 408 (490)
++||++||+. +.+++++.+ ||. ..|.|+.++.++..+||+.++........+ .++.|++. +.| ..
T Consensus 349 ViVIaATNrp---d~LDpALlRpGRFD---~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv---dl~~LA~~---T~GfSG 416 (467)
T 4b4t_H 349 IKVMFATNRP---NTLDPALLRPGRID---RKVEFSLPDLEGRANIFRIHSKSMSVERGI---RWELISRL---CPNSTG 416 (467)
T ss_dssp EEEEEECSCT---TSBCHHHHSTTTCC---EEECCCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHH---CCSCCH
T ss_pred EEEEeCCCCc---ccCChhhhcccccc---EEEEeCCcCHHHHHHHHHHHhcCCCCCCCC---CHHHHHHH---CCCCCH
Confidence 9999999964 556677765 787 589999999999999999888765222222 36677763 333 33
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
..+-++|..|...|.+++ ...|+.+||..|+.++..
T Consensus 417 ADI~~l~~eAa~~Air~~-----~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 417 AELRSVCTEAGMFAIRAR-----RKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHHHHHHHHHHHHT-----CSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-----CCccCHHHHHHHHHHHhc
Confidence 455568999999998887 678999999999998764
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2e-21 Score=196.92 Aligned_cols=222 Identities=14% Similarity=0.200 Sum_probs=166.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.++++++|.+.+...+. -..++++|||||||||||++|++++++++ ..++.++++.+.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~----~~f~~v~~s~l~~--- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN----ATFLKLAAPQLVQ--- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT----CEEEEEEGGGGCS---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC----CCEEEEehhhhhh---
Confidence 7899999999999987655432 23678999999999999999999999986 7889998877633
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~ 331 (490)
.+.|.+...+...|..+.. ..|+||||||+|.+...+ ...+..++.. ......+
T Consensus 254 -----------~~vGese~~ir~lF~~A~~--~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 254 -----------MYIGEGAKLVRDAFALAKE--KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -----------SCSSHHHHHHHHHHHHHHH--HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -----------cccchHHHHHHHHHHHHHh--cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 6777788888888877665 458999999999996542 1122233221 1224567
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DI 408 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~ 408 (490)
++||++||+. +.+++++.+ ||. ..|.|+.++.++..+||+.++........+ .++.|++ .+.| ..
T Consensus 321 ViVIaaTNrp---~~LD~AllRpGRfD---~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv---dl~~lA~---~t~G~sG 388 (434)
T 4b4t_M 321 VKVLAATNRV---DVLDPALLRSGRLD---RKIEFPLPSEDSRAQILQIHSRKMTTDDDI---NWQELAR---STDEFNG 388 (434)
T ss_dssp SEEEEECSSC---CCCCTTTCSTTSEE---EEEECCCCCHHHHHHHHHHHHHHSCBCSCC---CHHHHHH---HCSSCCH
T ss_pred EEEEEeCCCc---hhcCHhHhcCCcee---EEEEeCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHH---hCCCCCH
Confidence 9999999964 456667755 777 589999999999999999888775222222 2677776 3333 34
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
..+-++|..|...|.+++ ...|+.+||..|+..+.+...
T Consensus 389 ADi~~l~~eA~~~a~r~~-----~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 389 AQLKAVTVEAGMIALRNG-----QSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp HHHHHHHHHHHHHHHHHT-----CSSBCHHHHHHHHHSCSSSCC
T ss_pred HHHHHHHHHHHHHHHHcC-----CCCcCHHHHHHHHHHHhCCCC
Confidence 455578999999998888 678999999999998876543
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.3e-21 Score=196.64 Aligned_cols=220 Identities=15% Similarity=0.176 Sum_probs=165.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.++++++|.+.+...+. -..++++|||||||||||++|++++++++ +.++.++++.+.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~----~~~~~v~~s~l~s--- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG----ANFIFSPASGIVD--- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT----CEEEEEEGGGTCC---
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEehhhhcc---
Confidence 7899999999999998875433 23678999999999999999999999986 7889999887644
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~ 331 (490)
.+.|.+...+...|..+.. ..|+||||||+|.+...+ ...+..++.. .......
T Consensus 254 -----------k~~Gese~~ir~~F~~A~~--~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 -----------KYIGESARIIREMFAYAKE--HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -----------SSSSHHHHHHHHHHHHHHH--SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -----------ccchHHHHHHHHHHHHHHh--cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 6677777777777776655 569999999999997542 1222233221 1224567
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DI 408 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~ 408 (490)
++||++||+. +.+++++.+ ||. ..|.|+.++.++..+||+.++...... .+..++.+++ .+.| ..
T Consensus 321 vivI~ATNrp---~~LDpAllRpGRfD---~~I~i~lPd~~~R~~Il~~~~~~~~~~---~d~dl~~lA~---~t~G~sG 388 (437)
T 4b4t_L 321 TKIIMATNRP---DTLDPALLRPGRLD---RKVEIPLPNEAGRLEIFKIHTAKVKKT---GEFDFEAAVK---MSDGFNG 388 (437)
T ss_dssp SEEEEEESST---TSSCTTTTSTTSEE---EEECCCCCCHHHHHHHHHHHHHTSCBC---SCCCHHHHHH---TCCSCCH
T ss_pred eEEEEecCCc---hhhCHHHhCCCccc---eeeecCCcCHHHHHHHHHHHhcCCCCC---cccCHHHHHH---hCCCCCH
Confidence 8999999964 456666654 465 589999999999999999888765222 2223677776 3344 34
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
..+-++|..|...|.+++ ...|+.+||..|+..+...
T Consensus 389 ADi~~l~~eA~~~air~~-----~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 389 ADIRNCATEAGFFAIRDD-----RDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhc
Confidence 455568999999998887 6789999999999988754
No 13
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-20 Score=190.75 Aligned_cols=220 Identities=15% Similarity=0.154 Sum_probs=164.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.+++++.|.+.+...+. -..++++|||||||||||++|+++|++++ +.++.++++.+.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~----~~~~~v~~~~l~~--- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK----AAFIRVNGSEFVH--- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT----CEEEEEEGGGTCC---
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEecchhhc---
Confidence 7899999999999998765432 23678999999999999999999999986 7889999887643
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCC--CCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWP--SIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~--~~~~~~ 331 (490)
.+.|.+...+...|..+.. ..|+||||||+|.+...+ ...+..++.+. .....+
T Consensus 245 -----------~~~Ge~e~~ir~lF~~A~~--~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 -----------KYLGEGPRMVRDVFRLARE--NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp -----------SSCSHHHHHHHHHHHHHHH--TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred -----------cccchhHHHHHHHHHHHHH--cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 6677778888888877665 468999999999987542 12333333211 124567
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeC-CCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFA-PYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDI 408 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~-pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~ 408 (490)
++||++||+. +.+++++.+ ||. ..|.|+ +++.++...||+.++...... .+..++.+++...++ ..
T Consensus 312 v~vI~aTN~~---~~LD~AllRpGRfd---~~I~~p~lPd~~~R~~Il~~~~~~~~l~---~~~dl~~lA~~t~G~--sg 380 (428)
T 4b4t_K 312 VKVIMATNRA---DTLDPALLRPGRLD---RKIEFPSLRDRRERRLIFGTIASKMSLA---PEADLDSLIIRNDSL--SG 380 (428)
T ss_dssp EEEEEEESCS---SSCCHHHHSSSSEE---EEEECCSSCCHHHHHHHHHHHHHSSCBC---TTCCHHHHHHHTTTC--CH
T ss_pred EEEEEecCCh---hhcChhhhcCCcce---EEEEcCCCCCHHHHHHHHHHHhcCCCCC---cccCHHHHHHHCCCC--CH
Confidence 9999999964 456677765 676 478895 788999999999888765211 222367777733332 33
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
..+-++|..|...|.+++ ...|+.+||.+|+.....
T Consensus 381 adi~~l~~eA~~~a~r~~-----~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 381 AVIAAIMQEAGLRAVRKN-----RYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CSSBCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHhhC
Confidence 455578999999998888 678999999999987653
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.86 E-value=1.4e-20 Score=174.83 Aligned_cols=214 Identities=19% Similarity=0.241 Sum_probs=160.1
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEecc
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCN 257 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~ 257 (490)
+|.+.|.+... ++++|+++.++.|..++.. ....+++|+||+|+|||++++.+++.+... ....++.++|.
T Consensus 6 ~~~~~~~p~~~----~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 6 IWVEKYRPRTL----DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp CHHHHTSCSSG----GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred hHHHhcCCCCH----HHHcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 45555655555 7899999999999999864 344569999999999999999999987422 23457788876
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 258 SVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT----KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 258 ~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~----~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
...... .+...+...... .+++.+|||||+|.+....++.|..+++.. ...+.
T Consensus 78 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---~~~~~ 134 (226)
T 2chg_A 78 DERGID--------------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY---SKSCR 134 (226)
T ss_dssp CTTCHH--------------------HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEE
T ss_pred cccChH--------------------HHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc---CCCCe
Confidence 653322 222222222221 256789999999999877777788777643 33566
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
+|+++|. ...+.+.+.+||. .+.|.+++.+++.+++.+++...+ ..+++++++.+++ .+.|++|.+++
T Consensus 135 ~i~~~~~---~~~~~~~l~~r~~----~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~---~~~g~~r~l~~ 202 (226)
T 2chg_A 135 FILSCNY---VSRIIEPIQSRCA----VFRFKPVPKEAMKKRLLEICEKEG--VKITEDGLEALIY---ISGGDFRKAIN 202 (226)
T ss_dssp EEEEESC---GGGSCHHHHTTSE----EEECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHH---HHTTCHHHHHH
T ss_pred EEEEeCC---hhhcCHHHHHhCc----eeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH---HcCCCHHHHHH
Confidence 6777763 3456788888885 799999999999999999887653 4588999999886 77899999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+++.++..+ . .|+.++|.+++.
T Consensus 203 ~l~~~~~~~---~-------~I~~~~v~~~~~ 224 (226)
T 2chg_A 203 ALQGAAAIG---E-------VVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHTC---S-------CBCHHHHHHHHH
T ss_pred HHHHHHhcC---c-------eecHHHHHHHhc
Confidence 998887543 2 799999999875
No 15
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.86 E-value=5.1e-20 Score=185.48 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=167.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC-CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC----CHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE-TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR----NAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~-~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~----~~~~l~~~ 268 (490)
++|+|++..++.+..++....... .+++++|+||||||||++|+++++.+. ....++.++|..+. ....++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG--PDTPFTAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC--SSCCEEEEEGGGGSCSSSCHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc--ccCCcccccchhhhhcccchhHHHHH
Confidence 789999999887665554332222 346999999999999999999999986 44567777766532 23334443
Q ss_pred HHHHhcC-------------------------------CCCCCcHHHHHHHHHHHHh---cCCC----eEEEEEecCccc
Q psy200 269 IVNELKL-------------------------------KPGGKSERHQLGAILKYFD---TKHK----SILLILDEIDAL 310 (490)
Q Consensus 269 i~~~l~~-------------------------------~~~~~s~~~~~~~l~~~l~---~~~~----~~vI~IDEid~l 310 (490)
.+..... ...+.....+...+..+.. ..++ +.||||||+|.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 3333110 1111223444444444332 1122 569999999999
Q ss_pred cccCHHHHHHhHhCCCCCCCcEEEEEecCC--------CChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhc
Q psy200 311 ESRKQTILYTIFEWPSIPGSKLVLVGVANA--------LDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQ 382 (490)
Q Consensus 311 ~~~~~~~L~~l~~~~~~~~~~vilI~~tn~--------~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~ 382 (490)
....++.|+.+++.. ...++++++.+. .+....+.+.+.+||. .+.|.||+.+++.+++..++..
T Consensus 202 ~~~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~----~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 202 DIESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL----IVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp BHHHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE----EEEECCCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc----EEEecCCCHHHHHHHHHHHHHH
Confidence 887777777776543 334555555421 1224556788999996 6899999999999999999987
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 383 TDKFNMFNASALQLLAGKVAAVS-GDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 383 ~~~~~~~~~~~i~~i~~~i~~~~-Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
. ...+++++++.|++ ... |++|.++++|+.|...|..++ ...|+.++|.+++..+.
T Consensus 275 ~--~~~~~~~~l~~l~~---~~~~G~~r~~~~ll~~a~~~A~~~~-----~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 275 E--DVEMSEDAYTVLTR---IGLETSLRYAIQLITAASLVCRKRK-----GTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp T--TCCBCHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTT-----CSSBCHHHHHHHHHHSB
T ss_pred c--CCCCCHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhc
Confidence 5 35689999999998 444 999999999999999998887 67999999999998754
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.86 E-value=2.8e-20 Score=184.01 Aligned_cols=228 Identities=15% Similarity=0.189 Sum_probs=163.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++.++.|.+++...+. ....+++||+||||||||++|+++++++. ..+++++|..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~v~~~~l------ 87 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSSDL------ 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT----CEEEEEEHHHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC----CCEEEEchHHH------
Confidence 7899999999999998843221 12457899999999999999999999875 67888887542
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCCCCCCCcEEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~~~~~~~vil 334 (490)
...+.+.....+...+..+.. ..+.||||||||.|.... +..++..++........++|
T Consensus 88 --------~~~~~g~~~~~~~~~f~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 88 --------VSKWMGESEKLVKQLFAMARE--NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp --------HTTTGGGHHHHHHHHHHHHHH--TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred --------hhcccchHHHHHHHHHHHHHh--cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 113333444455555554443 457899999999997643 23344444433334568999
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRKAID 413 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ 413 (490)
|++||. ++.+++.+.+||. ..+.+.+++.++..+|+..++... ...+++..++.|++ ...| ..+.+-+
T Consensus 158 i~atn~---~~~ld~al~~Rf~---~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~l~~la~---~t~g~sg~di~~ 226 (322)
T 3eie_A 158 LGATNI---PWQLDSAIRRRFE---RRIYIPLPDLAARTTMFEINVGDT--PCVLTKEDYRTLGA---MTEGYSGSDIAV 226 (322)
T ss_dssp EEEESC---GGGSCHHHHHHCC---EEEECCCCCHHHHHHHHHHHHTTC--CCCCCHHHHHHHHH---TTTTCCHHHHHH
T ss_pred EEecCC---hhhCCHHHHcccC---eEEEeCCCCHHHHHHHHHHHhccC--CCCCCHHHHHHHHH---HcCCCCHHHHHH
Confidence 999984 4557788888997 489999999999999999998765 45578999999987 4444 3455556
Q ss_pred HHHHHHHHHHhccccC--------------------------------------CcccccCHHHHHHHHHHhccCcc
Q psy200 414 ITNHLIDLTYDNVKEN--------------------------------------GEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~--------------------------------------~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+|+.|+..+.++.... .....|+++||..|+..+.++..
T Consensus 227 l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 227 VVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp HHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 8888876665543110 01246999999999998887654
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.85 E-value=8e-20 Score=183.01 Aligned_cols=228 Identities=15% Similarity=0.193 Sum_probs=161.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++.++.|.+++...+. ....+++||+||||||||++|+++++++. ..++.++|..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~v~~~~l------ 120 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSSDL------ 120 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT----CEEEEEEHHHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CCEEEeeHHHH------
Confidence 7899999999999988753321 12457899999999999999999999985 67888877532
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCCCCCCCcEEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~~~~~~~vil 334 (490)
...+.+.....+...|..+.. ..++||||||+|.+.... +..|+..++........++|
T Consensus 121 --------~~~~~g~~~~~~~~~f~~a~~--~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 121 --------VSKWMGESEKLVKQLFAMARE--NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp --------HSCC---CHHHHHHHHHHHHH--TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred --------hhhhcchHHHHHHHHHHHHHH--cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 113334455555555554433 457899999999997542 23444444433334567999
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRKAID 413 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ 413 (490)
|++||. .+.+++.+.+||. ..+.+.+++.++...||..++... ...+++..++.|++ .+.| ..+.+-+
T Consensus 191 I~atn~---~~~ld~al~rRf~---~~i~i~~P~~~~r~~il~~~l~~~--~~~~~~~~l~~la~---~t~G~sg~dl~~ 259 (355)
T 2qp9_X 191 LGATNI---PWQLDSAIRRRFE---RRIYIPLPDLAARTTMFEINVGDT--PSVLTKEDYRTLGA---MTEGYSGSDIAV 259 (355)
T ss_dssp EEEESC---GGGSCHHHHHTCC---EEEECCCCCHHHHHHHHHHHHTTS--CBCCCHHHHHHHHH---HTTTCCHHHHHH
T ss_pred EeecCC---cccCCHHHHcccC---EEEEeCCcCHHHHHHHHHHHHhhC--CCCCCHHHHHHHHH---HcCCCCHHHHHH
Confidence 999985 4566788888997 489999999999999999998765 34568899999998 4445 4555666
Q ss_pred HHHHHHHHHHhccccC--------------------------------------CcccccCHHHHHHHHHHhccCcc
Q psy200 414 ITNHLIDLTYDNVKEN--------------------------------------GEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~--------------------------------------~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+|+.|+..|..+.... .....|+++||..|+..+.++..
T Consensus 260 l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 260 VVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 8888887776542100 01235999999999999887654
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=6.6e-20 Score=178.04 Aligned_cols=220 Identities=15% Similarity=0.196 Sum_probs=159.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
++++|.+++++.|.+++...+.. ..+.+++|+||||||||++|+++++.+. ..+++++|.....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~----~~~~~v~~~~~~~--- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN----ATFIRVVGSELVK--- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT----CEEEEEEGGGGCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEehHHHHH---
Confidence 67999999999999988654322 4678999999999999999999999875 6788888766532
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc-----------CHHHHHHhHhCC--CCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR-----------KQTILYTIFEWP--SIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~-----------~~~~L~~l~~~~--~~~~~~ 331 (490)
.+.+.....+...+..+.. ..+.||||||+|.+... .+..+..+++.. ......
T Consensus 90 -----------~~~~~~~~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 -----------KFIGEGASLVKDIFKLAKE--KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp -----------CSTTHHHHHHHHHHHHHHH--TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred -----------hccchHHHHHHHHHHHHHH--cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 2333333444444444433 45789999999998532 245555555431 124467
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DI 408 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~ 408 (490)
+++|+++|.. +.+.+.+.+ ||. ..+.|.+++.++..+++..++...... .+..++.++. ...| ..
T Consensus 157 ~~vI~ttn~~---~~l~~~l~~~~Rf~---~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~l~~---~~~g~~~ 224 (285)
T 3h4m_A 157 VKIIGATNRP---DILDPAILRPGRFD---RIIEVPAPDEKGRLEILKIHTRKMNLA---EDVNLEEIAK---MTEGCVG 224 (285)
T ss_dssp EEEEEECSCG---GGBCHHHHSTTSEE---EEEECCCCCHHHHHHHHHHHHTTSCBC---TTCCHHHHHH---HCTTCCH
T ss_pred EEEEEeCCCc---hhcCHHHcCCCcCC---eEEEECCCCHHHHHHHHHHHHhcCCCC---CcCCHHHHHH---HcCCCCH
Confidence 9999999853 556677776 776 479999999999999999988765221 2233566665 3445 45
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
+.+..+|..|...|..++ ...|+.++|.+|+.++...
T Consensus 225 ~~i~~l~~~a~~~a~~~~-----~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 225 AELKAICTEAGMNAIREL-----RDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-----cCcCCHHHHHHHHHHHHhc
Confidence 666678999999998887 6789999999999998754
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.5e-19 Score=177.01 Aligned_cols=229 Identities=16% Similarity=0.175 Sum_probs=164.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++.++.|.+.+...+. ...+++++|+||||||||++|+++++++ .+..++.+++....+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~~i~~~~l~~---- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSSDLVS---- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---TSCEEEEEECCSSCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---CCCcEEEEEhHHHHh----
Confidence 6799999999999988754322 1245799999999999999999999987 235788898876532
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCCCCCCCcEEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~~~~~~~vil 334 (490)
.+.+.+...+...+..+.. .+++||||||+|.+.... ...++..++.......+++|
T Consensus 85 ----------~~~g~~~~~~~~lf~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 ----------KWLGESEKLVKNLFQLARE--NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------SSCCSCHHHHHHHHHHHHH--TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hhhhHHHHHHHHHHHHHHh--cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 4455666666666665544 458899999999996432 12233333332234578999
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCC-HHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGD-IRKAID 413 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd-~r~ai~ 413 (490)
|++||.. +.+++.+.+||. ..+.+++++.++..+|+..++... ...+++..++.|++ .+.|. .+.+-.
T Consensus 153 I~atn~~---~~ld~al~rRf~---~~i~i~~P~~~~r~~il~~~l~~~--~~~l~~~~l~~la~---~t~G~sgadl~~ 221 (322)
T 1xwi_A 153 LGATNIP---WVLDSAIRRRFE---KRIYIPLPEPHARAAMFKLHLGTT--QNSLTEADFRELGR---KTDGYSGADISI 221 (322)
T ss_dssp EEEESCT---TTSCHHHHHTCC---EEEECCCCCHHHHHHHHHHHHTTC--CBCCCHHHHHHHHH---TCTTCCHHHHHH
T ss_pred EEecCCc---ccCCHHHHhhcC---eEEEeCCcCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHH---HcCCCCHHHHHH
Confidence 9999854 456778888997 489999999999999999988765 34568889999987 44454 444556
Q ss_pred HHHHHHHHHHhccccC--------------------------------------------CcccccCHHHHHHHHHHhcc
Q psy200 414 ITNHLIDLTYDNVKEN--------------------------------------------GEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~--------------------------------------------~~~~~It~~~v~~a~~~~~~ 449 (490)
+|+.|+..+.++.... .....|+++||..|+..+.+
T Consensus 222 l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~p 301 (322)
T 1xwi_A 222 IVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKP 301 (322)
T ss_dssp HHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCC
Confidence 8888876665432100 01236999999999998876
Q ss_pred Ccc
Q psy200 450 TSQ 452 (490)
Q Consensus 450 ~~~ 452 (490)
+..
T Consensus 302 s~~ 304 (322)
T 1xwi_A 302 TVN 304 (322)
T ss_dssp SCC
T ss_pred CCC
Confidence 544
No 20
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.84 E-value=4.1e-20 Score=189.99 Aligned_cols=218 Identities=16% Similarity=0.212 Sum_probs=159.6
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHH---HHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQL---EGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~---~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
+|.+.|.+... ++++|++..+ ..|...+.. +...+++|+||||||||++|+.+++.+. ..++.++
T Consensus 15 pla~r~rP~~l----~~ivGq~~~~~~~~~L~~~i~~----~~~~~vLL~GppGtGKTtlAr~ia~~~~----~~f~~l~ 82 (447)
T 3pvs_A 15 PLAARMRPENL----AQYIGQQHLLAAGKPLPRAIEA----GHLHSMILWGPPGTGKTTLAEVIARYAN----ADVERIS 82 (447)
T ss_dssp CHHHHTCCCST----TTCCSCHHHHSTTSHHHHHHHH----TCCCEEEEECSTTSSHHHHHHHHHHHTT----CEEEEEE
T ss_pred ChHHHhCCCCH----HHhCCcHHHHhchHHHHHHHHc----CCCcEEEEECCCCCcHHHHHHHHHHHhC----CCeEEEE
Confidence 34445555545 8999999998 677777754 5557899999999999999999999864 5677787
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 256 CNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
+... ....+.+.+..+.. ..++..+|||||||.+....++.|+..++. ..++
T Consensus 83 a~~~---------------------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-----~~v~ 136 (447)
T 3pvs_A 83 AVTS---------------------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-----GTIT 136 (447)
T ss_dssp TTTC---------------------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-----TSCE
T ss_pred eccC---------------------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-----CceE
Confidence 6543 12223333332221 135678999999999998888888888773 3577
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccC-----CCCCCCHHHHHHHHHHHHHhhCCH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTD-----KFNMFNASALQLLAGKVAAVSGDI 408 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~-----~~~~~~~~~i~~i~~~i~~~~Gd~ 408 (490)
+|++|+.. ....+.+.+.+||. .+.|.+++.+++..++.+.+.... ....+++++++.|++ .+.||+
T Consensus 137 lI~att~n-~~~~l~~aL~sR~~----v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~---~~~Gd~ 208 (447)
T 3pvs_A 137 FIGATTEN-PSFELNSALLSRAR----VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAE---LVNGDA 208 (447)
T ss_dssp EEEEESSC-GGGSSCHHHHTTEE----EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHH---HHCSCH
T ss_pred EEecCCCC-cccccCHHHhCcee----EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHH---HCCCCH
Confidence 77777532 23456788999985 799999999999999999988631 235689999999998 589999
Q ss_pred HHHHHHHHHHHHHHHhc--cccCCcccccCHHHHHHHHHHh
Q psy200 409 RKAIDITNHLIDLTYDN--VKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~--~~~~~~~~~It~~~v~~a~~~~ 447 (490)
|.++++|+.++..+... + ...|+.++|.+++...
T Consensus 209 R~lln~Le~a~~~a~~~~~~-----~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 209 RRALNTLEMMADMAEVDDSG-----KRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHSCBCTTS-----CEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcccccCC-----CCccCHHHHHHHHhhh
Confidence 99999999999887633 3 3579999999988754
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=6.9e-20 Score=181.15 Aligned_cols=235 Identities=15% Similarity=0.188 Sum_probs=176.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN-NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~-~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
++++|++..++.+..++..... .....+++|+||+|||||++|+++++.+. ..+++++|........+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~----~~~~~~~~~~~~~~~~l------- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG----VNLRVTSGPAIEKPGDL------- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT----CCEEEECTTTCCSHHHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC----CCEEEEeccccCChHHH-------
Confidence 7899999999999998876433 23567899999999999999999999875 57788888776443222
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhc-CCCeEEEEEecCccccccCHHHHHHhHhCCCC---------------CCCcEEEEE
Q psy200 273 LKLKPGGKSERHQLGAILKYFDT-KHKSILLILDEIDALESRKQTILYTIFEWPSI---------------PGSKLVLVG 336 (490)
Q Consensus 273 l~~~~~~~s~~~~~~~l~~~l~~-~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~---------------~~~~vilI~ 336 (490)
... +.. ...+.+|||||+|.+....+..|+.+++.... ....+++|+
T Consensus 81 -------------~~~----l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 81 -------------AAI----LANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -------------HHH----HTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -------------HHH----HHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 222 221 23456999999999988778878777654310 113578889
Q ss_pred ecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy200 337 VANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITN 416 (490)
Q Consensus 337 ~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~ 416 (490)
++|.. ..+.+.+.+||. ..+.|.+++.+++..++...+... ...+++++++.+++ .+.|++|.+.++++
T Consensus 144 ~t~~~---~~~~~~l~~R~~---~~i~l~~~~~~e~~~~l~~~~~~~--~~~~~~~~~~~l~~---~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 144 ATTRP---GLITAPLLSRFG---IVEHLEYYTPEELAQGVMRDARLL--GVRITEEAALEIGR---RSRGTMRVAKRLFR 212 (324)
T ss_dssp EESCC---SSCSCSTTTTCS---CEEECCCCCHHHHHHHHHHHHHTT--TCCCCHHHHHHHHH---HSCSCHHHHHHHHH
T ss_pred eCCCc---ccCCHHHHhccc---EEEecCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---HccCCHHHHHHHHH
Confidence 99854 344567788885 379999999999999999988765 35689999999987 56899999999999
Q ss_pred HHHHHHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcCC
Q psy200 417 HLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRP 481 (490)
Q Consensus 417 ~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~~ 481 (490)
.+...+...+ ...|+.+++..++...... ...+...++.++.+++....+.
T Consensus 213 ~~~~~a~~~~-----~~~i~~~~~~~~~~~~~~~---------~~~l~~~e~~~i~~~~~~~~g~ 263 (324)
T 1hqc_A 213 RVRDFAQVAG-----EEVITRERALEALAALGLD---------ELGLEKRDREILEVLILRFGGG 263 (324)
T ss_dssp HHTTTSTTTS-----CSCCCHHHHHHHHHHHTCC---------TTCCCHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHhc-----CCCCCHHHHHHHHHHhccc---------ccCCCHHHHHHHHHHHHHhcCC
Confidence 9887776555 4579999999988775321 2456777778888777665443
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.84 E-value=2.1e-19 Score=182.41 Aligned_cols=236 Identities=14% Similarity=0.205 Sum_probs=162.5
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceE
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKT 251 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~ 251 (490)
|...|.+... ++++|++..++.|.+++..... .....++||+||+|||||++|+++++++. ..+
T Consensus 105 ~~~~~~~~~~----~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~----~~~ 176 (389)
T 3vfd_A 105 IVDNGTAVKF----DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN----ATF 176 (389)
T ss_dssp TBCCSCCCCG----GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT----CEE
T ss_pred hhccCCCCCh----HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc----CcE
Confidence 4444444444 7899999999999998854332 23468999999999999999999999864 788
Q ss_pred EEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHH
Q psy200 252 IYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYT 320 (490)
Q Consensus 252 ~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~ 320 (490)
++++|..+.. .+.+.....+...+..+.. ..+.||||||||.|.... +..|..
T Consensus 177 ~~v~~~~l~~--------------~~~g~~~~~~~~~~~~a~~--~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 240 (389)
T 3vfd_A 177 FNISAASLTS--------------KYVGEGEKLVRALFAVARE--LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLI 240 (389)
T ss_dssp EEECSCCC---------------------CHHHHHHHHHHHHH--SSSEEEEEETGGGGC--------CTHHHHHHHHHH
T ss_pred EEeeHHHhhc--------------cccchHHHHHHHHHHHHHh--cCCeEEEEECchhhcccCCCccchHHHHHHHHHHH
Confidence 9999987643 2223334444445544433 356899999999995432 122222
Q ss_pred hHh-CCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHH
Q psy200 321 IFE-WPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAG 399 (490)
Q Consensus 321 l~~-~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~ 399 (490)
.++ .......+++||++||. .+.+.+.+.+||. ..+.|.+++.++...++..++... ...++++.++.|++
T Consensus 241 ~l~~~~~~~~~~v~vI~atn~---~~~l~~~l~~R~~---~~i~i~~p~~~~r~~il~~~~~~~--~~~l~~~~~~~la~ 312 (389)
T 3vfd_A 241 EFDGVQSAGDDRVLVMGATNR---PQELDEAVLRRFI---KRVYVSLPNEETRLLLLKNLLCKQ--GSPLTQKELAQLAR 312 (389)
T ss_dssp HHHHHC-----CEEEEEEESC---GGGCCHHHHTTCC---EEEECCCCCHHHHHHHHHHHHTTS--CCCSCHHHHHHHHH
T ss_pred HhhcccccCCCCEEEEEecCC---chhcCHHHHcCcc---eEEEcCCcCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Confidence 222 22224568999999985 4566788888987 379999999999999999988775 45688999999887
Q ss_pred HHHHhhCCHHHHH-HHHHHHHHHHHhccccC-------CcccccCHHHHHHHHHHhccC
Q psy200 400 KVAAVSGDIRKAI-DITNHLIDLTYDNVKEN-------GEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 400 ~i~~~~Gd~r~ai-~ll~~a~~~a~~~~~~~-------~~~~~It~~~v~~a~~~~~~~ 450 (490)
...|..+..+ .+|..|+..+.++.... .....|+.+||..++..+.+.
T Consensus 313 ---~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 313 ---MTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp ---HTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred ---HcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 5667666555 47888877776652211 124579999999999887654
No 23
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.83 E-value=3.5e-19 Score=170.32 Aligned_cols=218 Identities=12% Similarity=0.156 Sum_probs=157.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.+..++.|.+.+..... ...+.+++|+||+|||||++++++++.+. ..+++++|..+..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~i~~~~~~~---- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK----VPFFTISGSDFVE---- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT----CCEEEECSCSSTT----
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----CCEEEEeHHHHHH----
Confidence 7899999999988887654211 12466899999999999999999999874 5678888876532
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH-----------HHHHHh---HhCCCCCCCc
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ-----------TILYTI---FEWPSIPGSK 331 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~-----------~~L~~l---~~~~~~~~~~ 331 (490)
...+.....+...+..+.. ..+++|||||+|.+....+ ..+..+ ++.. .....
T Consensus 84 ----------~~~~~~~~~~~~~~~~a~~--~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~ 150 (257)
T 1lv7_A 84 ----------MFVGVGASRVRDMFEQAKK--AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-EGNEG 150 (257)
T ss_dssp ----------SCCCCCHHHHHHHHHHHHT--TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-CSSSC
T ss_pred ----------HhhhhhHHHHHHHHHHHHH--cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc-ccCCC
Confidence 2334455556666665443 4578999999998865421 223333 2221 23567
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DI 408 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~ 408 (490)
+++|++||..+ .+++.+.+ ||. ..+.+.+++.++..+|+..++.... ...+..+..++. .+.| +.
T Consensus 151 ~~vI~~tn~~~---~l~~~l~r~~rf~---~~i~i~~P~~~~r~~il~~~~~~~~---l~~~~~~~~la~---~~~G~~~ 218 (257)
T 1lv7_A 151 IIVIAATNRPD---VLDPALLRPGRFD---RQVVVGLPDVRGREQILKVHMRRVP---LAPDIDAAIIAR---GTPGFSG 218 (257)
T ss_dssp EEEEEEESCTT---TSCGGGGSTTSSC---EEEECCCCCHHHHHHHHHHHHTTSC---BCTTCCHHHHHH---TCTTCCH
T ss_pred EEEEEeeCCch---hCCHHHcCCCcCC---eEEEeCCCCHHHHHHHHHHHHhcCC---CCccccHHHHHH---HcCCCCH
Confidence 89999998653 44555555 676 4799999999999999998886542 112223556665 6788 99
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
+.+.++|++|...|..++ ...|+.+||.+|+..+..
T Consensus 219 ~dl~~l~~~a~~~a~~~~-----~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 219 ADLANLVNEAALFAARGN-----KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhC-----CCcccHHHHHHHHHHHhc
Confidence 999999999999998887 578999999999998753
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.83 E-value=9.6e-20 Score=182.19 Aligned_cols=236 Identities=17% Similarity=0.164 Sum_probs=165.5
Q ss_pred cCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc--CCceEEEEe
Q psy200 178 LFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK--DAFKTIYIN 255 (490)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~--~~~~~~~v~ 255 (490)
.+|.++|.+... ++++|+++.++.|..++.. +...+++|+||+|+|||++++++++.+... ..+.++.++
T Consensus 25 ~~~~~k~~p~~~----~~i~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 25 QPWVEKYRPKNL----DEVTAQDHAVTVLKKTLKS----ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp -CHHHHTCCSST----TTCCSCCTTHHHHHHHTTC----TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred ccHHHhcCCCCH----HHhhCCHHHHHHHHHHHhc----CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 367778887776 8999999999888888753 444569999999999999999999987532 335678888
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 256 CNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
+........+ ......+........... .. .....+...||||||+|.+....++.|..+++... ....+|
T Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~---~~~~~i 167 (353)
T 1sxj_D 97 ASDERGISIV-REKVKNFARLTVSKPSKH----DL-ENYPCPPYKIIILDEADSMTADAQSALRRTMETYS---GVTRFC 167 (353)
T ss_dssp SSSCCCHHHH-TTHHHHHHHSCCCCCCTT----HH-HHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT---TTEEEE
T ss_pred cccccchHHH-HHHHHHHhhhcccccchh----hc-ccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC---CCceEE
Confidence 8765433322 211111110000000000 00 11122456799999999998888888888877542 234455
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
.++|. ...+.+.+.+||. .+.|.+++.+++..++..++... ...+++++++.|++ ...||+|.+++++
T Consensus 168 l~~~~---~~~l~~~l~sR~~----~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~l~~l~~---~~~G~~r~~~~~l 235 (353)
T 1sxj_D 168 LICNY---VTRIIDPLASQCS----KFRFKALDASNAIDRLRFISEQE--NVKCDDGVLERILD---ISAGDLRRGITLL 235 (353)
T ss_dssp EEESC---GGGSCHHHHHHSE----EEECCCCCHHHHHHHHHHHHHTT--TCCCCHHHHHHHHH---HTSSCHHHHHHHH
T ss_pred EEeCc---hhhCcchhhccCc----eEEeCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 55663 4567888999985 79999999999999999988765 35689999999997 5679999999999
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
+.+...+...+. ...|+.++|.+++..
T Consensus 236 ~~~~~~~~~~~~----~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 236 QSASKGAQYLGD----GKNITSTQVEELAGV 262 (353)
T ss_dssp HHTHHHHHHHCS----CCCCCHHHHHHHHTC
T ss_pred HHHHHhcCCCcc----CccccHHHHHHHhCC
Confidence 998877654431 126999998887653
No 25
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.82 E-value=6e-20 Score=181.78 Aligned_cols=211 Identities=17% Similarity=0.183 Sum_probs=150.9
Q ss_pred ccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 177 LLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
..+|.++|.+... ++++|+++.++.|..++.. +..++.++++||+|+|||++++++++.+. ..++++++
T Consensus 13 ~~~~~~k~rP~~~----~~ivg~~~~~~~l~~~l~~---~~~~~~~L~~G~~G~GKT~la~~la~~l~----~~~~~i~~ 81 (324)
T 3u61_B 13 EHILEQKYRPSTI----DECILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHDVN----ADMMFVNG 81 (324)
T ss_dssp CSSHHHHSCCCST----TTSCCCHHHHHHHHHHHHT---TCCCSEEEECSSTTSSHHHHHHHHHHHTT----EEEEEEET
T ss_pred cchHHHhhCCCCH----HHHhCcHHHHHHHHHHHHc---CCCCeEEEeeCcCCCCHHHHHHHHHHHhC----CCEEEEcc
Confidence 3478888988877 9999999999999999873 34556778889999999999999999874 68899987
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc---CCCeEEEEEecCcccc-ccCHHHHHHhHhCCCCCCCcE
Q psy200 257 NSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT---KHKSILLILDEIDALE-SRKQTILYTIFEWPSIPGSKL 332 (490)
Q Consensus 257 ~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~---~~~~~vI~IDEid~l~-~~~~~~L~~l~~~~~~~~~~v 332 (490)
.... ...+.+.+..+... .+.+.+|||||+|.+. ...++.|..+++.. ...+
T Consensus 82 ~~~~---------------------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~---~~~~ 137 (324)
T 3u61_B 82 SDCK---------------------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY---SSNC 137 (324)
T ss_dssp TTCC---------------------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH---GGGC
T ss_pred cccC---------------------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC---CCCc
Confidence 6542 22233333333322 2367899999999998 77788888887643 2456
Q ss_pred EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHH-------HHHHhccCCCCCCCH-HHHHHHHHHHHHh
Q psy200 333 VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEII-------SQKLKQTDKFNMFNA-SALQLLAGKVAAV 404 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il-------~~~l~~~~~~~~~~~-~~i~~i~~~i~~~ 404 (490)
.+|+++|. ...+.+.+++||. .+.|.+++.+++.+++ ...+... ...+++ ++++.+++ .+
T Consensus 138 ~iI~~~n~---~~~l~~~l~sR~~----~i~~~~~~~~e~~~il~~~~~~l~~~~~~~--~~~~~~~~~~~~l~~---~~ 205 (324)
T 3u61_B 138 SIIITANN---IDGIIKPLQSRCR----VITFGQPTDEDKIEMMKQMIRRLTEICKHE--GIAIADMKVVAALVK---KN 205 (324)
T ss_dssp EEEEEESS---GGGSCTTHHHHSE----EEECCCCCHHHHHHHHHHHHHHHHHHHHHH--TCCBSCHHHHHHHHH---HT
T ss_pred EEEEEeCC---ccccCHHHHhhCc----EEEeCCCCHHHHHHHHHHHHHHHHHHHHHc--CCCCCcHHHHHHHHH---hC
Confidence 77778884 3467788999995 7999999988854443 3334443 345777 99999987 68
Q ss_pred hCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 405 SGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 405 ~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
.||+|.+++.|+.+. .. ..|+.+++..++.
T Consensus 206 ~gd~R~a~~~L~~~~----~~-------~~i~~~~v~~~~~ 235 (324)
T 3u61_B 206 FPDFRKTIGELDSYS----SK-------GVLDAGILSLVTN 235 (324)
T ss_dssp CSCTTHHHHHHHHHG----GG-------TCBCC--------
T ss_pred CCCHHHHHHHHHHHh----cc-------CCCCHHHHHHHhC
Confidence 899999999998876 22 2466666665443
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.3e-18 Score=174.42 Aligned_cols=228 Identities=13% Similarity=0.175 Sum_probs=160.3
Q ss_pred CCCCChHHHHHHHHHHHHhhh--------ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV--------NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~--------~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|++..++.|.+++...+ ......+++|+||+|||||++|+++++.+. ..+++++|.....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~i~~~~l~~---- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG----ATFFSISASSLTS---- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT----CEEEEEEGGGGCC----
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC----CeEEEEehHHhhc----
Confidence 679999999999999886432 124578999999999999999999999864 6889999876532
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHh-CCCCCCCcEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFE-WPSIPGSKLV 333 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~-~~~~~~~~vi 333 (490)
.+.+.....+...+..+.. ..+.||||||||.|.... +..+...++ .......+++
T Consensus 156 ----------~~~g~~~~~~~~~~~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 156 ----------KWVGEGEKMVRALFAVARC--QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp ----------SSTTHHHHHHHHHHHHHHH--TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ----------cccchHHHHHHHHHHHHHh--cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 2233333334444443332 457899999999996542 122222232 2223456899
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRKAI 412 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai 412 (490)
||++||. .+.+.+.+.+||. ..+.+..++.++..+++...+... ...++++.++.|++ ...| ..+.+.
T Consensus 224 vI~atn~---~~~l~~~l~~Rf~---~~i~i~~p~~~~r~~il~~~~~~~--~~~l~~~~l~~la~---~t~G~s~~dl~ 292 (357)
T 3d8b_A 224 VVGATNR---PQEIDEAARRRLV---KRLYIPLPEASARKQIVINLMSKE--QCCLSEEEIEQIVQ---QSDAFSGADMT 292 (357)
T ss_dssp EEEEESC---GGGBCHHHHTTCC---EEEECCCCCHHHHHHHHHHHHHTS--CBCCCHHHHHHHHH---HTTTCCHHHHH
T ss_pred EEEecCC---hhhCCHHHHhhCc---eEEEeCCcCHHHHHHHHHHHHhhc--CCCccHHHHHHHHH---HcCCCCHHHHH
Confidence 9999985 3456778888987 478999999999999999988765 34578999999987 4455 334444
Q ss_pred HHHHHHHHHHHhccccC-------CcccccCHHHHHHHHHHhccCcc
Q psy200 413 DITNHLIDLTYDNVKEN-------GEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 413 ~ll~~a~~~a~~~~~~~-------~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
.+|+.|+..+.++.... .....|+.+||..|+..+.+...
T Consensus 293 ~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 293 QLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp HHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCC
Confidence 68888877666532110 11457999999999999886544
No 27
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=2.7e-20 Score=195.66 Aligned_cols=231 Identities=15% Similarity=0.195 Sum_probs=159.5
Q ss_pred cCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhcc-------------CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 178 LFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNN-------------ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~-------------~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..|.++|.+... ++++|++++++.|..||..+... +..+.++|+||+|||||++|++++++++
T Consensus 27 ~lW~ekyrP~~~----~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 27 KLWTVKYAPTNL----QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CCHHHHTCCSSG----GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcccccCCCCH----HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 478889998877 89999999999999999875321 1457999999999999999999999974
Q ss_pred hcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH---HHHHHh
Q psy200 245 IKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ---TILYTI 321 (490)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~---~~L~~l 321 (490)
+.+++++|........+ ...+..+... .....++......+...+++.||||||+|.+....+ ..|..+
T Consensus 103 ----~~~i~in~s~~~~~~~~-~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~ 174 (516)
T 1sxj_A 103 ----YDILEQNASDVRSKTLL-NAGVKNALDN---MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF 174 (516)
T ss_dssp ----CEEEEECTTSCCCHHHH-HHTGGGGTTB---CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH
T ss_pred ----CCEEEEeCCCcchHHHH-HHHHHHHhcc---ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHH
Confidence 78999999988664432 2222111110 000011110101112235678999999999987765 455555
Q ss_pred HhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Q psy200 322 FEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKV 401 (490)
Q Consensus 322 ~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i 401 (490)
++. ....+++|+.+... ..++.+.+|+. .+.|.+++.+++.++|...+...+ ..+++++++.|++
T Consensus 175 l~~---~~~~iIli~~~~~~----~~l~~l~~r~~----~i~f~~~~~~~~~~~L~~i~~~~~--~~i~~~~l~~la~-- 239 (516)
T 1sxj_A 175 CRK---TSTPLILICNERNL----PKMRPFDRVCL----DIQFRRPDANSIKSRLMTIAIREK--FKLDPNVIDRLIQ-- 239 (516)
T ss_dssp HHH---CSSCEEEEESCTTS----STTGGGTTTSE----EEECCCCCHHHHHHHHHHHHHHHT--CCCCTTHHHHHHH--
T ss_pred HHh---cCCCEEEEEcCCCC----ccchhhHhceE----EEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHH--
Confidence 543 34556666654321 12344666653 899999999999999999887763 4578899999987
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 402 AAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 402 ~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
...||+|.++++++.+.. + ...|+.+++..++..
T Consensus 240 -~s~GdiR~~i~~L~~~~~-----~-----~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 240 -TTRGDIRQVINLLSTIST-----T-----TKTINHENINEISKA 273 (516)
T ss_dssp -HTTTCHHHHHHHHTHHHH-----H-----SSCCCTTHHHHHHHH
T ss_pred -HcCCcHHHHHHHHHHHHh-----c-----CCCCchHHHHHHHHh
Confidence 678999999999876642 2 235777777666553
No 28
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.82 E-value=3.6e-18 Score=169.70 Aligned_cols=237 Identities=18% Similarity=0.237 Sum_probs=173.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN-NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~-~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~ 272 (490)
++++|++..++.|...+..... +....+++|+||+|+|||||++.++..++ ..+...++.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~----~~~~~~sg~~~~~----------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ----TNIHVTSGPVLVK----------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT----CCEEEEETTTCCS-----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEechHhcC-----------
Confidence 7889999999888888765322 23457899999999999999999999985 2333444332211
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC---------------CCCcEEEEEe
Q psy200 273 LKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI---------------PGSKLVLVGV 337 (490)
Q Consensus 273 l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~---------------~~~~vilI~~ 337 (490)
..++...+. ...+..|+||||++.+....++.|+..++.... .-..+.++++
T Consensus 90 ---------~~~l~~~~~----~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 90 ---------QGDMAAILT----SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp ---------HHHHHHHHH----HCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred ---------HHHHHHHHH----HccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 122222211 112345999999999987666777665543211 0124667777
Q ss_pred cCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy200 338 ANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNH 417 (490)
Q Consensus 338 tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~ 417 (490)
++. ...+.+.+++||++ .+.|++++.+++.+++.+.+... ...++++++..|++ ...|++|.++++|++
T Consensus 157 t~~---~~~Ls~~l~sR~~l---~~~Ld~~~~~~l~~iL~~~~~~~--~~~~~~~~~~~ia~---~~~G~~R~a~~ll~~ 225 (334)
T 1in4_A 157 TTR---SGLLSSPLRSRFGI---ILELDFYTVKELKEIIKRAASLM--DVEIEDAAAEMIAK---RSRGTPRIAIRLTKR 225 (334)
T ss_dssp ESC---GGGSCHHHHTTCSE---EEECCCCCHHHHHHHHHHHHHHT--TCCBCHHHHHHHHH---TSTTCHHHHHHHHHH
T ss_pred cCC---cccCCHHHHHhcCc---eeeCCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHH---hcCCChHHHHHHHHH
Confidence 764 45677889999974 68999999999999999887765 35689999999987 678999999999999
Q ss_pred HHHHHHhccccCCcccccCHHHHHHHHHHhccCccccccccccCCCChHhHHHHHHHHHHhcCCCC
Q psy200 418 LIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNV 483 (490)
Q Consensus 418 a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~~~~~~~~l~~L~~~qk~vL~al~~~~~~~~~ 483 (490)
+...|...+ ...|+.+++.+++..+..+ -.+++.+.+.+|.+++..++++.+
T Consensus 226 ~~~~a~~~~-----~~~It~~~v~~al~~~~~~---------~~~l~~~~~~~l~~~~~~~~~~~~ 277 (334)
T 1in4_A 226 VRDMLTVVK-----ADRINTDIVLKTMEVLNID---------DEGLDEFDRKILKTIIEIYRGGPV 277 (334)
T ss_dssp HHHHHHHHT-----CSSBCHHHHHHHHHHHTCC---------TTCCCHHHHHHHHHHHHHSTTCCB
T ss_pred HHHHHHHcC-----CCCcCHHHHHHHHHHhCCC---------cCCCCHHHHHHHHHHHHHhCCCcc
Confidence 998888776 5689999999999986422 147888999999999988765543
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.82 E-value=4.3e-19 Score=169.88 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=145.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++.++.|.+++..... ...+++++|+||||||||++|+++++++. ..+++++|.....
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~---- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVE---- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSS----
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHh----
Confidence 6799999999999887754211 13567899999999999999999999875 6788898877532
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc------------CHHHHHHhHhCC--CCCCCc
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR------------KQTILYTIFEWP--SIPGSK 331 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~------------~~~~L~~l~~~~--~~~~~~ 331 (490)
.+.+.....+...+..+.. ..+.||||||+|.+... .+..+..++... ......
T Consensus 78 ----------~~~~~~~~~~~~~~~~a~~--~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 78 ----------VIGGLGAARVRSLFKEARA--RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ----------SSTTHHHHHHHHHHHHHHH--TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ----------hccChhHHHHHHHHHHHHh--cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 2223334444455555443 34789999999999532 233444444321 123457
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHH-HHHHHHHHHHHhhCC-
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNAS-ALQLLAGKVAAVSGD- 407 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~-~i~~i~~~i~~~~Gd- 407 (490)
+++|+++|.. +.+++.+.+ ||. ..+.|.+++.++..+++.+++...+ ...+.+ .++.+++ ...|.
T Consensus 146 ~~vi~~tn~~---~~ld~~l~~~~R~~---~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~---~~~g~~ 214 (262)
T 2qz4_A 146 VIVLASTNRA---DILDGALMRPGRLD---RHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAE---LTPGFS 214 (262)
T ss_dssp EEEEEEESCG---GGGGSGGGSTTSCC---EEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHH---TCTTCC
T ss_pred EEEEecCCCh---hhcCHHHhcCCcCC---eEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHH---HCCCCC
Confidence 8999999853 445667766 786 4799999999999999999988762 333443 3456665 34443
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 408 IRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 408 ~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
.+.+.++++.|...|..++ ...|+.+++..|+.++...
T Consensus 215 ~~~l~~l~~~a~~~a~~~~-----~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 215 GADIANICNEAALHAAREG-----HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHHHHHHHHHHHTC-------------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHhccC
Confidence 3466678999988888776 5689999999999987644
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=2.6e-18 Score=167.85 Aligned_cols=226 Identities=14% Similarity=0.209 Sum_probs=159.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|++..++.|.+++..... ...+++++|+||||||||++|+++++.+. ..++.++|.....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~~~~l~~---- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS----ATFLNISAASLTS---- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEESTTTSS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEeeHHHHhh----
Confidence 7899999999999988754321 23568999999999999999999999874 6788899876532
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH-----------HHHHHhHhCC-C-CCCCcE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ-----------TILYTIFEWP-S-IPGSKL 332 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~-----------~~L~~l~~~~-~-~~~~~v 332 (490)
.+.+.........+..+.. ..+.+|||||+|.+....+ ..|...++.. . ..+.++
T Consensus 93 ----------~~~~~~~~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 ----------KYVGDGEKLVRALFAVARH--MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ----------SSCSCHHHHHHHHHHHHHH--TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ----------cccchHHHHHHHHHHHHHH--cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 3333444444444444333 4578999999999965431 1233333322 1 123578
Q ss_pred EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 333 VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
++|++||.. +.+++.+.+||. ..+.+..++.++...++..++... ...+++++++.+++ .+.|..+..+
T Consensus 161 ~vi~~tn~~---~~l~~~l~~R~~---~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~~~~la~---~~~g~~~~~l 229 (297)
T 3b9p_A 161 VVLAATNRP---QELDEAALRRFT---KRVYVSLPDEQTRELLLNRLLQKQ--GSPLDTEALRRLAK---ITDGYSGSDL 229 (297)
T ss_dssp EEEEEESCG---GGBCHHHHHHCC---EEEECCCCCHHHHHHHHHHHHGGG--SCCSCHHHHHHHHH---HTTTCCHHHH
T ss_pred EEEeecCCh---hhCCHHHHhhCC---eEEEeCCcCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---HcCCCCHHHH
Confidence 999999853 456777888887 479999999999999999988775 34578899999987 5567766555
Q ss_pred -HHHHHHHHHHHhccccC-------CcccccCHHHHHHHHHHhccC
Q psy200 413 -DITNHLIDLTYDNVKEN-------GEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 413 -~ll~~a~~~a~~~~~~~-------~~~~~It~~~v~~a~~~~~~~ 450 (490)
.+|+.|+..+.++.... .....|+.+||..|+..+.++
T Consensus 230 ~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 230 TALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp HHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 68888887777654211 113579999999999876654
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.81 E-value=5.8e-19 Score=173.32 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=154.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-----------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC---CceEEEEeccCC
Q psy200 194 CELPGREVQLEGIRQFLLGHVN-----------NETSGSMYISGPPGTGKSASLNLLVSRAEIKD---AFKTIYINCNSV 259 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~-----------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~---~~~~~~v~~~~~ 259 (490)
.+++|+++.++.|.+++..... .....+++|+||||||||++|+++++.+.... ...++++++..+
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 4699999999999988765321 34566899999999999999999999886322 236888887655
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc---------CHHHHHHhHhCCCCCCC
Q psy200 260 RNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR---------KQTILYTIFEWPSIPGS 330 (490)
Q Consensus 260 ~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~---------~~~~L~~l~~~~~~~~~ 330 (490)
.. ...+.........|..+ .+.||||||+|.+... .+..|+.+++. ...
T Consensus 111 ~~--------------~~~g~~~~~~~~~~~~~-----~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~---~~~ 168 (309)
T 3syl_A 111 VG--------------QYIGHTAPKTKEVLKRA-----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN---NRD 168 (309)
T ss_dssp CC--------------SSTTCHHHHHHHHHHHH-----TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH---CTT
T ss_pred hh--------------hcccccHHHHHHHHHhc-----CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc---CCC
Confidence 22 33344444444444433 2349999999998532 23455555553 345
Q ss_pred cEEEEEecCCC--ChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH-----H
Q psy200 331 KLVLVGVANAL--DLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVA-----A 403 (490)
Q Consensus 331 ~vilI~~tn~~--~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~-----~ 403 (490)
++++|+++|.. +....+.+.+++||. ..+.|++++.+++..++.+++... ...+++++++.+++.+. .
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R~~---~~i~~~~~~~~~~~~il~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~ 243 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSRIA---HHIEFPDYSDEELFEIAGHMLDDQ--NYQMTPEAETALRAYIGLRRNQP 243 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHHEE---EEEEECCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHHHHHHHTTSS
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHhCC---eEEEcCCcCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhccCC
Confidence 67788888743 223344689999996 489999999999999999999876 45689999999998554 5
Q ss_pred hhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHH
Q psy200 404 VSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLG 442 (490)
Q Consensus 404 ~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~ 442 (490)
+.||+|.+.++|++++..+..+.... ....++.+++..
T Consensus 244 ~~gn~r~l~~~l~~a~~~~~~r~~~~-~~~~~~~~~l~~ 281 (309)
T 3syl_A 244 HFANARSIRNALDRARLRQANRLFTA-SSGPLDARALST 281 (309)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHC----CEEHHHHHE
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHhh
Confidence 67999999999999987554331100 023455555543
No 32
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=4.4e-19 Score=175.00 Aligned_cols=216 Identities=19% Similarity=0.252 Sum_probs=159.1
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEecc
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCN 257 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~ 257 (490)
+|.++|.+... ++++|+++.++.|..++.. +...+++|+||+|+|||++++.+++.+... ..+.++++++.
T Consensus 10 ~~~~~~~p~~~----~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 10 PWVEKYRPQVL----SDIVGNKETIDRLQQIAKD----GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp CHHHHTCCSSG----GGCCSCTHHHHHHHHHHHS----CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cHHHhcCCCCH----HHHHCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 56667777666 7899999999999998864 444459999999999999999999987421 12457888876
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----c-CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcE
Q psy200 258 SVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD----T-KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKL 332 (490)
Q Consensus 258 ~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~----~-~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~v 332 (490)
.... ...+.+.+..... . .+++.||||||+|.+....++.|..+++.. ...+
T Consensus 82 ~~~~--------------------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~ 138 (323)
T 1sxj_B 82 DDRG--------------------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY---SNST 138 (323)
T ss_dssp SCCS--------------------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT---TTTE
T ss_pred cccC--------------------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc---CCCc
Confidence 5422 2233333333221 0 245789999999999877777777777643 3356
Q ss_pred EEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHH
Q psy200 333 VLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai 412 (490)
++|++++. ...+.+.+.+||. .+.|.+++.+++.+++..++... ...+++++++.+++ ...||+|.++
T Consensus 139 ~~il~~~~---~~~l~~~l~sr~~----~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~---~~~G~~r~a~ 206 (323)
T 1sxj_B 139 RFAFACNQ---SNKIIEPLQSQCA----ILRYSKLSDEDVLKRLLQIIKLE--DVKYTNDGLEAIIF---TAEGDMRQAI 206 (323)
T ss_dssp EEEEEESC---GGGSCHHHHTTSE----EEECCCCCHHHHHHHHHHHHHHH--TCCBCHHHHHHHHH---HHTTCHHHHH
T ss_pred eEEEEeCC---hhhchhHHHhhce----EEeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHH
Confidence 66666763 4567788999985 89999999999999999988765 34588999999987 6689999999
Q ss_pred HHHHHHHHHHHhccccCCcccccCHHHHHHHHHHh
Q psy200 413 DITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 413 ~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
++++.+... .+ .|+.++|.+++...
T Consensus 207 ~~l~~~~~~---~~-------~i~~~~v~~~~~~~ 231 (323)
T 1sxj_B 207 NNLQSTVAG---HG-------LVNADNVFKIVDSP 231 (323)
T ss_dssp HHHHHHHHH---HS-------SBCHHHHHHHHTSC
T ss_pred HHHHHHHhc---CC-------CcCHHHHHHHHCCC
Confidence 999877632 12 58888887776543
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=9.8e-19 Score=171.52 Aligned_cols=236 Identities=16% Similarity=0.208 Sum_probs=158.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhc----------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN----------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA 263 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~----------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~ 263 (490)
+.++|+++.++.|...+...+. ...+.+++|+||||||||++|+++++.+. ..+++++|......
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~----~~~~~i~~~~~~~~- 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN----APFIKVEATKFTEV- 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT----CCEEEEEGGGGSSC-
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEcchhcccC-
Confidence 7899999999999988865211 23567999999999999999999999874 57888998876431
Q ss_pred HHHHHHHHHhcCCCCCCcH-HHHHHHHHH---HHhcCCCeEEEEEecCccccccC------------HHHHHHhHhCCC-
Q psy200 264 SVYETIVNELKLKPGGKSE-RHQLGAILK---YFDTKHKSILLILDEIDALESRK------------QTILYTIFEWPS- 326 (490)
Q Consensus 264 ~l~~~i~~~l~~~~~~~s~-~~~~~~l~~---~l~~~~~~~vI~IDEid~l~~~~------------~~~L~~l~~~~~- 326 (490)
.+.+... ..+.+.+.. .+...+.+.||||||+|.+.... ++.|+.+++...
T Consensus 90 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 157 (310)
T 1ofh_A 90 ------------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV 157 (310)
T ss_dssp ------------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE
T ss_pred ------------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeE
Confidence 0001111 111111110 01110124599999999998765 677777776321
Q ss_pred ------CCCCcEEEEEecCC-CChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHH-----------HHhccCCCCC
Q psy200 327 ------IPGSKLVLVGVANA-LDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQ-----------KLKQTDKFNM 388 (490)
Q Consensus 327 ------~~~~~vilI~~tn~-~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~-----------~l~~~~~~~~ 388 (490)
.....+++|++++. ......+.+.+.+||. ..+.|++++.+++..++.+ .+...+....
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~---~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 234 (310)
T 1ofh_A 158 STKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP---IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIA 234 (310)
T ss_dssp EETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCC---EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEE
T ss_pred ecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCC---ceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeec
Confidence 02346788887642 1234567889999997 3799999999999999983 1222222346
Q ss_pred CCHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHHHHHHhcccc-CCcccccCHHHHHHHHHHhcc
Q psy200 389 FNASALQLLAGKVAAV-----SGDIRKAIDITNHLIDLTYDNVKE-NGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 389 ~~~~~i~~i~~~i~~~-----~Gd~r~ai~ll~~a~~~a~~~~~~-~~~~~~It~~~v~~a~~~~~~ 449 (490)
+++++++.|++..... .||+|.+.++|++++..+...... ......|+.+++..++.....
T Consensus 235 ~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 235 FTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp ECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred cCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 8999999999843322 599999999999987554322210 011225999999999987643
No 34
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.80 E-value=1e-18 Score=164.31 Aligned_cols=233 Identities=16% Similarity=0.210 Sum_probs=151.3
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.|.+.|.+... ++++|++++++.|..++.. ...++.++|+||+|+|||++++.+++.+.... .+....|..
T Consensus 12 ~~~~~~~p~~~----~~~~g~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~--~~~~~~~~~ 82 (250)
T 1njg_A 12 VLARKWRPQTF----ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCET--GITATPCGV 82 (250)
T ss_dssp CHHHHTCCCSG----GGCCSCHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTT--CSCSSCCSC
T ss_pred HHhhccCCccH----HHHhCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC--CCCCCCCcc
Confidence 34445555444 7899999999999999874 33456899999999999999999999875221 111112221
Q ss_pred CCCHHHHHHHHHHH-hcCCCCC-CcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEE
Q psy200 259 VRNAASVYETIVNE-LKLKPGG-KSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 259 ~~~~~~l~~~i~~~-l~~~~~~-~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vil 334 (490)
......+....... +...... .....+...+..... ..+++.+|||||+|.+....++.|..+++.. ...+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~---~~~~~~ 159 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP---PEHVKF 159 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC---CTTEEE
T ss_pred cHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC---CCceEE
Confidence 11100000000000 0000000 112222222221111 1245789999999999876677777776632 346777
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
|++++. ...+.+.+.+|+ ..+.|.+++.+++.+++..++... ...+++++++.+++ .+.|+++.++++
T Consensus 160 i~~t~~---~~~~~~~l~~r~----~~i~l~~l~~~e~~~~l~~~~~~~--~~~~~~~~~~~l~~---~~~G~~~~~~~~ 227 (250)
T 1njg_A 160 LLATTD---PQKLPVTILSRC----LQFHLKALDVEQIRHQLEHILNEE--HIAHEPRALQLLAR---AAEGSLRDALSL 227 (250)
T ss_dssp EEEESC---GGGSCHHHHTTS----EEEECCCCCHHHHHHHHHHHHHHT--TCCBCHHHHHHHHH---HHTTCHHHHHHH
T ss_pred EEEeCC---hHhCCHHHHHHh----hhccCCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---HcCCCHHHHHHH
Confidence 777764 344566777886 389999999999999999998765 35678999999887 668999999999
Q ss_pred HHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 415 TNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 415 l~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++.++.. + ...|+.++|.+++
T Consensus 228 ~~~~~~~----~-----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 228 TDQAIAS----G-----DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHTT----T-----TSSBCHHHHHHHS
T ss_pred HHHHHhc----c-----CceecHHHHHHHh
Confidence 9888532 2 2379999998875
No 35
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.80 E-value=2.8e-18 Score=176.67 Aligned_cols=220 Identities=16% Similarity=0.177 Sum_probs=157.5
Q ss_pred CCCCChHHHHHHHHHHHHhhh--------ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV--------NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~--------~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++.+++|.+.+.... ....+++++|+||||||||+++++++.++. ..+++++|..+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~----~~f~~is~~~~~~---- 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN----VPFFHISGSDFVE---- 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT----CCEEEEEGGGTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCeeeCCHHHHHH----
Confidence 679999999988888765421 112457899999999999999999999875 6788998877633
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH-----------HHHHHhHhCC--CCCCCcE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ-----------TILYTIFEWP--SIPGSKL 332 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~-----------~~L~~l~~~~--~~~~~~v 332 (490)
.+.+.....+...|..+.. +.++||||||+|.+....+ ..+..++... ......+
T Consensus 88 ----------~~~g~~~~~~r~lf~~A~~--~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 88 ----------LFVGVGAARVRDLFAQAKA--HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp ----------CCTTHHHHHHHHHHHHHHH--TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred ----------HHhcccHHHHHHHHHHHHh--cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 2333445556666666554 4589999999999975432 2333333211 1134579
Q ss_pred EEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCH-H
Q psy200 333 VLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDI-R 409 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~-r 409 (490)
+||++||.. +.+++.+.+ ||. ..+.|.+++.++..+|++.++..... .++..++.++. .+.|.. +
T Consensus 156 iVIaaTn~~---~~Ld~allR~gRFd---~~i~i~~Pd~~~R~~Il~~~~~~~~l---~~~v~l~~la~---~t~G~sga 223 (476)
T 2ce7_A 156 IVMAATNRP---DILDPALLRPGRFD---KKIVVDPPDMLGRKKILEIHTRNKPL---AEDVNLEIIAK---RTPGFVGA 223 (476)
T ss_dssp EEEEEESCG---GGSCGGGGSTTSSC---EEEECCCCCHHHHHHHHHHHHTTSCB---CTTCCHHHHHH---TCTTCCHH
T ss_pred EEEEecCCh---hhhchhhcccCcce---eEeecCCCCHHHHHHHHHHHHHhCCC---cchhhHHHHHH---hcCCCcHH
Confidence 999999964 344555554 776 48999999999999999988876421 12223666766 678877 6
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
.+.++|.+|...|...+ ...|+.++|..|+..+...
T Consensus 224 dL~~lv~~Aal~A~~~~-----~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 224 DLENLVNEAALLAAREG-----RDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHHHHHHHHHTT-----CSSBCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcC-----CCeecHHHHHHHHHHHhcC
Confidence 78889999999888777 5689999999999998754
No 36
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=6.5e-19 Score=174.08 Aligned_cols=198 Identities=19% Similarity=0.263 Sum_probs=148.1
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEecc
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINCN 257 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~~ 257 (490)
+|.++|.+... ++++|+++.++.|..++.. +...+++|+||+|+|||++++++++.+.... ...++++++.
T Consensus 14 ~~~~k~~p~~~----~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 14 PWVEKYRPQRL----DDIVGQEHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp CHHHHTCCCST----TTCCSCHHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred chhhccCCCCH----HHhhCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 67778887766 8999999999999988864 4455699999999999999999999874221 2356777765
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEE
Q psy200 258 SVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT----KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 258 ~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~----~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vi 333 (490)
.... ...+.+.+...... .+++.+|||||+|.+....++.|..+++.. ...++
T Consensus 86 ~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~---~~~~~ 142 (327)
T 1iqp_A 86 DERG--------------------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVR 142 (327)
T ss_dssp CHHH--------------------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEE
T ss_pred ccCc--------------------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc---CCCCe
Confidence 4211 11111122222111 145779999999999887888888888753 23566
Q ss_pred EEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
+|+++|. ...+.+.+.+||. .+.|.|++.+++..++...+... ...+++++++.+++ .+.||+|.+++
T Consensus 143 ~i~~~~~---~~~l~~~l~sr~~----~~~~~~l~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~---~~~g~~r~~~~ 210 (327)
T 1iqp_A 143 FILSCNY---SSKIIEPIQSRCA----IFRFRPLRDEDIAKRLRYIAENE--GLELTEEGLQAILY---IAEGDMRRAIN 210 (327)
T ss_dssp EEEEESC---GGGSCHHHHHTEE----EEECCCCCHHHHHHHHHHHHHTT--TCEECHHHHHHHHH---HHTTCHHHHHH
T ss_pred EEEEeCC---ccccCHHHHhhCc----EEEecCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---HCCCCHHHHHH
Confidence 6666763 3557788889985 79999999999999999988765 34589999999987 67899999999
Q ss_pred HHHHHH
Q psy200 414 ITNHLI 419 (490)
Q Consensus 414 ll~~a~ 419 (490)
+++.+.
T Consensus 211 ~l~~~~ 216 (327)
T 1iqp_A 211 ILQAAA 216 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 37
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.80 E-value=3.7e-19 Score=175.19 Aligned_cols=217 Identities=19% Similarity=0.240 Sum_probs=154.7
Q ss_pred cCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEec
Q psy200 178 LFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYINC 256 (490)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~~ 256 (490)
.+|.++|.+... ++++|++..++.|..++.. +...+++|+||+|+|||++++.+++.+.... ...+++++|
T Consensus 5 ~~~~~k~~p~~~----~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 5 EIWVEKYRPRTL----DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp -CTTTTTSCSSG----GGSCSCHHHHHHHHTTTTT----TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred ccHHHhcCCCCH----HHHhCCHHHHHHHHHHHhC----CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 378889988877 8899999999888877753 4445699999999999999999999874211 235678887
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH-hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEE
Q psy200 257 NSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYF-DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 257 ~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l-~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI 335 (490)
....... ........+.... -..+++.||||||+|.+....++.|..+++. ....+++|
T Consensus 77 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~---~~~~~~~i 136 (319)
T 2chq_A 77 SDERGID-----------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM---YSKSCRFI 136 (319)
T ss_dssp TSTTCTT-----------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS---SSSSEEEE
T ss_pred ccccChH-----------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh---cCCCCeEE
Confidence 7542110 1111111111100 0124578999999999987666666555543 34567777
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
+++|. ...+.+.+.+||. .+.|.+++.+++..++..++... ...+++++++.++. .+.||+|.+++++
T Consensus 137 ~~~~~---~~~l~~~l~sr~~----~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~l~~l~~---~~~G~~r~~~~~l 204 (319)
T 2chq_A 137 LSCNY---VSRIIEPIQSRCA----VFRFKPVPKEAMKKRLLEICEKE--GVKITEDGLEALIY---ISGGDFRKAINAL 204 (319)
T ss_dssp EEESC---GGGSCHHHHTTCE----EEECCCCCHHHHHHHHHHHHHTT--CCCBCHHHHHHHHH---TTTTCHHHHHHHH
T ss_pred EEeCC---hhhcchHHHhhCe----EEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHHHHHH
Confidence 77774 3467788999985 89999999999999999998876 35689999999987 7789999999998
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
+.+... + ..|+.+++.+++
T Consensus 205 ~~~~~~----~------~~i~~~~v~~~~ 223 (319)
T 2chq_A 205 QGAAAI----G------EVVDADTIYQIT 223 (319)
T ss_dssp HHHHHS----S------SCBCHHHHHHHT
T ss_pred HHHHHc----C------CCCCHHHHHHHH
Confidence 877532 1 246666665543
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.79 E-value=2.5e-18 Score=177.10 Aligned_cols=229 Identities=17% Similarity=0.176 Sum_probs=156.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.+..++.|.+++...+. ...++++||+||||||||++|+++++++ .+..++.++|..+.+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~~~~~~v~~~~l~~---- 206 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSSDLVS---- 206 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CSSEEEEECCC--------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CCCCEEEEeHHHHHh----
Confidence 7899999999999988743211 2356899999999999999999999987 235788888875422
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------HHHHHHhHhCC---CCCCCcEEE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------QTILYTIFEWP---SIPGSKLVL 334 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------~~~L~~l~~~~---~~~~~~vil 334 (490)
.+.+.+...+...|..+.. ..+.||||||||.+.... ...+..++... .....+++|
T Consensus 207 ----------~~~g~~~~~~~~~f~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 207 ----------KWLGESEKLVKNLFQLARE--NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp ---------------CCCTHHHHHHHHHH--SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred ----------hhcchHHHHHHHHHHHHHH--cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 1222223334444444333 457899999999995431 22333343322 224578999
Q ss_pred EEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHHHHH
Q psy200 335 VGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRKAID 413 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ 413 (490)
|++||.. +.+++.+.+||. ..+.+++++.++...|+..++... ...+++..++.|++ .+.| ..+.+-.
T Consensus 275 I~atn~~---~~ld~al~rRf~---~~i~i~~P~~~~r~~il~~~l~~~--~~~l~~~~l~~la~---~t~G~sgadl~~ 343 (444)
T 2zan_A 275 LGATNIP---WVLDSAIRRRFE---KRIYIPLPEAHARAAMFRLHLGST--QNSLTEADFQELGR---KTDGYSGADISI 343 (444)
T ss_dssp EEEESCG---GGSCHHHHTTCC---EEEECCCCCHHHHHHHHHHHHTTS--CEECCHHHHHHHHH---HTTTCCHHHHHH
T ss_pred EecCCCc---cccCHHHHhhcc---eEEEeCCcCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHH---HcCCCCHHHHHH
Confidence 9999854 567788888997 489999999999999999988765 33468889999988 4455 3445556
Q ss_pred HHHHHHHHHHhccccC--------------------------------------------CcccccCHHHHHHHHHHhcc
Q psy200 414 ITNHLIDLTYDNVKEN--------------------------------------------GEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~--------------------------------------------~~~~~It~~~v~~a~~~~~~ 449 (490)
+|+.|+..+.++.... .....|+++||..|+..+.+
T Consensus 344 l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~p 423 (444)
T 2zan_A 344 IVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKP 423 (444)
T ss_dssp HHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCC
Confidence 7778776665432100 01246999999999998877
Q ss_pred Ccc
Q psy200 450 TSQ 452 (490)
Q Consensus 450 ~~~ 452 (490)
+..
T Consensus 424 s~~ 426 (444)
T 2zan_A 424 TVN 426 (444)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 39
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.79 E-value=3.3e-18 Score=177.06 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=107.4
Q ss_pred EEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEe---------cCCCChhHhhhHHhhhccCCCCeeEEeCCCCHH
Q psy200 300 ILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGV---------ANALDLTDRMLPRLQANVTLQPTLMNFAPYSRE 370 (490)
Q Consensus 300 ~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~---------tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~ 370 (490)
.|+||||+|.|....++.|+..++... ..++++++ ++.......+.+.+++||. .+.|.+|+.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~---~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~----~~~~~~~~~~ 369 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSI---APIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM----IIRTMLYTPQ 369 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTT---CCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE----EEECCCCCHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccC---CCEEEEecCCccccccccccccccccCChhHHhhcc----eeeCCCCCHH
Confidence 599999999998888888888877442 33544454 3323345667889999997 6899999999
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 371 QILEIISQKLKQTDKFNMFNASALQLLAGKVAAV-SGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 371 e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~-~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
++.++|.+++... ...+++++++.|++ .. .|++|.++++|+.|...|..++ ...|+.++|.+++.-+.
T Consensus 370 e~~~iL~~~~~~~--~~~~~~~~~~~i~~---~a~~g~~r~a~~ll~~a~~~A~~~~-----~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 370 EMKQIIKIRAQTE--GINISEEALNHLGE---IGTKTTLRYSVQLLTPANLLAKING-----KDSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHHHHHHHHHHH--TCCBCHHHHHHHHH---HHHHSCHHHHHHTHHHHHHHHHHTT-----CSSBCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHh--CCCCCHHHHHHHHH---HccCCCHHHHHHHHHHHHHHHhhcC-----CCccCHHHHHHHHHHhc
Confidence 9999999998766 35689999999987 34 6999999999999999999888 67899999999987654
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.79 E-value=4.1e-19 Score=173.87 Aligned_cols=227 Identities=17% Similarity=0.220 Sum_probs=152.4
Q ss_pred CCCCChHHHHHHHHHHHHhhh---------ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV---------NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~---------~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
++++|.++.++.|.+++...+ ....+.+++|+||||||||++|+++++.+. ..++.++|..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~~~------ 84 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPE------ 84 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECHHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEhHH------
Confidence 679999999999999886532 124678899999999999999999999874 6778887643
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------------HHHHHHhHhCCCCCCC
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------------QTILYTIFEWPSIPGS 330 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------------~~~L~~l~~~~~~~~~ 330 (490)
+...+. +.....+...|..+.. ..+++|||||+|.+.... +..|+..++-. ....
T Consensus 85 l~~~~~--------g~~~~~~~~~f~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~-~~~~ 153 (301)
T 3cf0_A 85 LLTMWF--------GESEANVREIFDKARQ--AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM-STKK 153 (301)
T ss_dssp HHHHHH--------TTCTTHHHHHHHHHHH--TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS-CTTS
T ss_pred HHhhhc--------CchHHHHHHHHHHHHh--cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc-cCCC
Confidence 222221 1233445555555443 457899999999986431 23444444422 2456
Q ss_pred cEEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCH
Q psy200 331 KLVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDI 408 (490)
Q Consensus 331 ~vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~ 408 (490)
+++||++||.. +.+++.+.+ ||. ..+.|++++.++..+|+..++........++ ++.++....++.|+
T Consensus 154 ~v~vi~atn~~---~~ld~al~r~gRf~---~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~---~~~la~~~~g~sg~- 223 (301)
T 3cf0_A 154 NVFIIGATNRP---DIIDPAILRPGRLD---QLIYIPLPDEKSRVAILKANLRKSPVAKDVD---LEFLAKMTNGFSGA- 223 (301)
T ss_dssp SEEEEEEESCG---GGSCGGGGSTTSSC---EEEECCCCCHHHHHHHHHHHHTTSCBCSSCC---HHHHHHTCSSCCHH-
T ss_pred CEEEEEecCCc---cccChHHhcCCccc---eEEecCCcCHHHHHHHHHHHHccCCCCccch---HHHHHHHcCCCCHH-
Confidence 79999999954 445666665 776 4899999999999999999987653222233 45566534444443
Q ss_pred HHHHHHHHHHHHHHHhcccc--------------------CCcccccCHHHHHHHHHHhccCcc
Q psy200 409 RKAIDITNHLIDLTYDNVKE--------------------NGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~--------------------~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
.+-++|++|+..|..+... ......|+.+||..|+..+.++..
T Consensus 224 -dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~ 286 (301)
T 3cf0_A 224 -DLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 286 (301)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSC
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCC
Confidence 5556788877766543210 001246999999999988765433
No 41
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.78 E-value=1.5e-18 Score=163.50 Aligned_cols=209 Identities=11% Similarity=0.197 Sum_probs=144.6
Q ss_pred CCCCCh---HHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHH
Q psy200 194 CELPGR---EVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIV 270 (490)
Q Consensus 194 ~~lvgr---e~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~ 270 (490)
+++++. +..++.+..++. .....+++|+||+|+|||++++.+++.+... .+.++++++......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~~~~~-------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAAS----GDGVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGIHASI-------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHH----TCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGGGS--------
T ss_pred hhccCCCCCHHHHHHHHHHHh----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHH--------
Confidence 556653 456666666554 3467899999999999999999999988633 567888887654210
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhh
Q psy200 271 NELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTDRML 348 (490)
Q Consensus 271 ~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~ 348 (490)
. .+.+....++.+|||||++.+.... ++.|+.+++.....+...+++++....+....+.
T Consensus 95 ------~------------~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 95 ------S------------TALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp ------C------------GGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred ------H------------HHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 0 0001111335699999999998765 6777776543221222213333332222222334
Q ss_pred HHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhcccc
Q psy200 349 PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKE 428 (490)
Q Consensus 349 ~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~ 428 (490)
+.+.+||..+ ..+.|.+++.+++.+++..++... ...+++++++.+++ .+.||+|.++++++.+...+..++
T Consensus 157 ~~l~~r~~~~-~~i~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~---~~~g~~r~l~~~l~~~~~~a~~~~-- 228 (242)
T 3bos_A 157 PDLVSRMHWG-LTYQLQPMMDDEKLAALQRRAAMR--GLQLPEDVGRFLLN---RMARDLRTLFDVLDRLDKASMVHQ-- 228 (242)
T ss_dssp HHHHHHHHHS-EEEECCCCCGGGHHHHHHHHHHHT--TCCCCHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHHT--
T ss_pred hhhhhHhhcC-ceEEeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HccCCHHHHHHHHHHHHHHHHHhC--
Confidence 7777787311 279999999999999999998765 35689999999987 678999999999999998886555
Q ss_pred CCcccccCHHHHHHHHH
Q psy200 429 NGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 429 ~~~~~~It~~~v~~a~~ 445 (490)
..|+.+++.+++.
T Consensus 229 ----~~It~~~v~~~l~ 241 (242)
T 3bos_A 229 ----RKLTIPFVKEMLR 241 (242)
T ss_dssp ----CCCCHHHHHHHHT
T ss_pred ----CCCcHHHHHHHhh
Confidence 3699999998874
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.4e-18 Score=173.21 Aligned_cols=221 Identities=21% Similarity=0.247 Sum_probs=159.5
Q ss_pred ccCCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC-CceEEEEe
Q psy200 177 LLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKD-AFKTIYIN 255 (490)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~-~~~~~~v~ 255 (490)
..+|.++|.+... ++++|++..++.|..++.. +...+++|+||+|+||||+++++++.+.... ...++.++
T Consensus 12 ~~~~~~k~rp~~~----~~~~g~~~~~~~L~~~i~~----g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 12 NLPWVEKYRPETL----DEVYGQNEVITTVRKFVDE----GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp CCCHHHHTCCSSG----GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred CCchHHHhCCCcH----HHhcCcHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 3478888888777 8899999999988888864 4444599999999999999999999875221 12466676
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCc
Q psy200 256 CNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDT----KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSK 331 (490)
Q Consensus 256 ~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~----~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~ 331 (490)
+..... ...+.+.+...... .+...|+||||+|.+....++.|..+++... ..
T Consensus 84 ~~~~~~--------------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~---~~ 140 (340)
T 1sxj_C 84 ASDDRG--------------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT---KN 140 (340)
T ss_dssp TTSCCS--------------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT---TT
T ss_pred Cccccc--------------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC---CC
Confidence 654322 23333333332211 1346799999999998888888888887542 34
Q ss_pred EEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
..+|.++|. ...+.+.+.+||. .+.|.+++.+++.+++.+.+... ...+++++++.+++ ...|++|.+
T Consensus 141 ~~~il~~n~---~~~i~~~i~sR~~----~~~~~~l~~~~~~~~l~~~~~~~--~~~i~~~~~~~i~~---~s~G~~r~~ 208 (340)
T 1sxj_C 141 TRFCVLANY---AHKLTPALLSQCT----RFRFQPLPQEAIERRIANVLVHE--KLKLSPNAEKALIE---LSNGDMRRV 208 (340)
T ss_dssp EEEEEEESC---GGGSCHHHHTTSE----EEECCCCCHHHHHHHHHHHHHTT--TCCBCHHHHHHHHH---HHTTCHHHH
T ss_pred eEEEEEecC---ccccchhHHhhce----eEeccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HcCCCHHHH
Confidence 555666763 4677889999985 79999999999999999988765 35689999999987 678999999
Q ss_pred HHHHHHHHHHHHhccccCCcccccCHHHHHHHHH
Q psy200 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVIS 445 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~ 445 (490)
+++++.+...+...+ ...|+.+++..++.
T Consensus 209 ~~~l~~~~~~~~~~~-----~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 209 LNVLQSCKATLDNPD-----EDEISDDVIYECCG 237 (340)
T ss_dssp HHHTTTTTTTTCSSS-----CCCBCHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcc-----cccccHHHHHHHhC
Confidence 999877653332222 23577777765543
No 43
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.77 E-value=2.9e-18 Score=177.92 Aligned_cols=226 Identities=15% Similarity=0.201 Sum_probs=161.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
++++|.+.+++.|.+++...+. ...+.++||+||||||||++|+++++++. ..+++++|..+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~vn~~~l~---- 275 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIM---- 275 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS----SEEEEEEHHHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC----CCEEEEEchHhh----
Confidence 6799999999999998875421 35678899999999999999999998864 788999986542
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCCCCCCCcEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~~~~~~~vi 333 (490)
..+.+.....+...|..+.. +++.+|||||||.+.... +..|+.+++.. .....++
T Consensus 276 ----------~~~~g~~~~~~~~~f~~A~~--~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~-~~~~~v~ 342 (489)
T 3hu3_A 276 ----------SKLAGESESNLRKAFEEAEK--NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-KQRAHVI 342 (489)
T ss_dssp ----------TSCTTHHHHHHHHHHHHHHH--TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS-CTTSCEE
T ss_pred ----------hhhcchhHHHHHHHHHHHHh--cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc-ccCCceE
Confidence 13334455556666666554 458899999999987642 24455555532 2456899
Q ss_pred EEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCC-HHH
Q psy200 334 LVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGD-IRK 410 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd-~r~ 410 (490)
||++||.. +.+.+.+.+ ||. ..+.|.+++.++..++|..++.... ...+..++.++. ...|. .+.
T Consensus 343 vIaaTn~~---~~Ld~al~r~gRf~---~~i~i~~P~~~eR~~IL~~~~~~~~---l~~~~~l~~la~---~t~g~s~~d 410 (489)
T 3hu3_A 343 VMAATNRP---NSIDPALRRFGRFD---REVDIGIPDATGRLEILQIHTKNMK---LADDVDLEQVAN---ETHGHVGAD 410 (489)
T ss_dssp EEEEESCG---GGBCGGGGSTTSSC---EEEECCCCCHHHHHHHHHHHTTTSC---BCTTCCHHHHHH---TCTTCCHHH
T ss_pred EEEecCCc---cccCHHHhCCCcCc---eEEEeCCCCHHHHHHHHHHHHhcCC---CcchhhHHHHHH---HccCCcHHH
Confidence 99999954 445677776 665 4799999999999999998877652 122334566666 44454 444
Q ss_pred HHHHHHHHHHHHHhccccCC------------cccccCHHHHHHHHHHhccCcc
Q psy200 411 AIDITNHLIDLTYDNVKENG------------EVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 411 ai~ll~~a~~~a~~~~~~~~------------~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+-.+|..|...+..+..... ....|+++||..|+..+.++..
T Consensus 411 L~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 55688999888877653210 1235899999999988765443
No 44
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.76 E-value=1.3e-17 Score=168.06 Aligned_cols=229 Identities=17% Similarity=0.230 Sum_probs=152.7
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
.|.++|.+... ++++|++++++.|..++.. +..++.++|+||+|+|||++++.+++.+...... ....|..
T Consensus 5 ~l~~k~rp~~~----~~~vg~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~--~~~~~~~ 75 (373)
T 1jr3_A 5 VLARKWRPQTF----ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI--TATPCGV 75 (373)
T ss_dssp CHHHHTCCCST----TTSCSCHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS--CSSCCSS
T ss_pred HHHHhhCCCch----hhccCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC--CCCCCcc
Confidence 34455666555 7899999999999998864 3445678999999999999999999988532111 1112222
Q ss_pred CCCHHHHHHHHHHH----h-cCC-CCCCcHHHHHHHHHHHHh--cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCC
Q psy200 259 VRNAASVYETIVNE----L-KLK-PGGKSERHQLGAILKYFD--TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGS 330 (490)
Q Consensus 259 ~~~~~~l~~~i~~~----l-~~~-~~~~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~ 330 (490)
+.+. ..+... + ... ........+.+.+..... ..+++.||||||+|.+....++.|..+++. ...
T Consensus 76 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~---~~~ 148 (373)
T 1jr3_A 76 CDNC----REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE---PPE 148 (373)
T ss_dssp SHHH----HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS---CCS
T ss_pred cHHH----HHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc---CCC
Confidence 2111 111100 0 000 000112223333332221 124578999999999988777888887764 344
Q ss_pred cEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHH
Q psy200 331 KLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRK 410 (490)
Q Consensus 331 ~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ 410 (490)
.+++|++++. ...+.+.+.+||. .+.|.+++.+++..++.+++... ...+++++++.+++ ...|+++.
T Consensus 149 ~~~~Il~~~~---~~~l~~~l~sr~~----~i~~~~l~~~~~~~~l~~~~~~~--~~~~~~~a~~~l~~---~~~G~~r~ 216 (373)
T 1jr3_A 149 HVKFLLATTD---PQKLPVTILSRCL----QFHLKALDVEQIRHQLEHILNEE--HIAHEPRALQLLAR---AAEGSLRD 216 (373)
T ss_dssp SEEEEEEESC---GGGSCHHHHTTSE----EEECCCCCHHHHHHHHHHHHHHH--TCCBCHHHHHHHHH---HSSSCHHH
T ss_pred ceEEEEEeCC---hHhCcHHHHhhee----EeeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHH---HCCCCHHH
Confidence 6777777763 3456778888874 89999999999999999998776 34578999999987 66899999
Q ss_pred HHHHHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 411 AIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 411 ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
++++++.++..+ .+ .|+.++|.+++
T Consensus 217 ~~~~l~~~~~~~--~~-------~i~~~~v~~~~ 241 (373)
T 1jr3_A 217 ALSLTDQAIASG--DG-------QVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHHT--TT-------CBCHHHHHHHT
T ss_pred HHHHHHHHHHhc--CC-------cccHHHHHHHh
Confidence 999998886432 22 56776666553
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.74 E-value=1.1e-16 Score=158.71 Aligned_cols=238 Identities=13% Similarity=0.129 Sum_probs=168.4
Q ss_pred CCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 180 SEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 180 ~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
|.+.+.+... +.++|+++.++.+...+.. +++++|+||||||||++++++++.+. ..++.++|...
T Consensus 17 ~~~~~~~~~~----~~i~g~~~~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~~~----~~~~~i~~~~~ 82 (331)
T 2r44_A 17 KIKEVIDEVG----KVVVGQKYMINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKTMD----LDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHHHT----TTCCSCHHHHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHHTT----CCEEEEECCTT
T ss_pred HHHHHHHHhc----cceeCcHHHHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHHhC----CCeEEEecCCC
Confidence 3334555544 8999999999888887754 46899999999999999999999875 45677887655
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-CCeEEEEEecCccccccCHHHHHHhHhCCC--------CCCC
Q psy200 260 RNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK-HKSILLILDEIDALESRKQTILYTIFEWPS--------IPGS 330 (490)
Q Consensus 260 ~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~-~~~~vI~IDEid~l~~~~~~~L~~l~~~~~--------~~~~ 330 (490)
....+++.... +. ...+. . .+..+ -...+|||||++.+....+..|...++... ....
T Consensus 83 ~~~~~l~g~~~--~~-~~~~~-~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~ 149 (331)
T 2r44_A 83 LLPSDLIGTMI--YN-QHKGN-F---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDN 149 (331)
T ss_dssp CCHHHHHEEEE--EE-TTTTE-E---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCS
T ss_pred CChhhcCCcee--ec-CCCCc-e---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCC
Confidence 44444322110 00 00000 0 00000 012499999999998888888888776321 1244
Q ss_pred cEEEEEecCCCChhH--hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccC--------------------CCCC
Q psy200 331 KLVLVGVANALDLTD--RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTD--------------------KFNM 388 (490)
Q Consensus 331 ~vilI~~tn~~~~~~--~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~--------------------~~~~ 388 (490)
++++|+++|..+... .+.+.+.+||.+ .+.+.+++.++..+++..++.... ....
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~Rf~~---~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 226 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVDRFMM---KIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVT 226 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHTTSSE---EEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCB
T ss_pred CEEEEEecCCCcccCcccCCHHHHhheeE---EEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCC
Confidence 678888888654322 267889999973 699999999999999998876431 1345
Q ss_pred CCHHHHHHHHHHHHHh--hC---------------CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCc
Q psy200 389 FNASALQLLAGKVAAV--SG---------------DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 389 ~~~~~i~~i~~~i~~~--~G---------------d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~ 451 (490)
+++++++.+++..... .| +.|.++++++.|...|...+ ...|+.+|+..++..++...
T Consensus 227 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g-----~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 227 ISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN-----RDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp CCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT-----CSBCCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHhHhh
Confidence 7888899888754321 12 69999999999999998888 66899999999999988766
Q ss_pred c
Q psy200 452 Q 452 (490)
Q Consensus 452 ~ 452 (490)
.
T Consensus 302 ~ 302 (331)
T 2r44_A 302 I 302 (331)
T ss_dssp S
T ss_pred c
Confidence 5
No 46
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.74 E-value=4.2e-18 Score=184.44 Aligned_cols=226 Identities=15% Similarity=0.215 Sum_probs=157.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.++++++|.+++...+. ...+++||||||||||||++|++++++++ ..+++++|..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg----~~~~~v~~~~l----- 274 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEI----- 274 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT----CEEEEEEHHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----CeEEEEEhHHh-----
Confidence 6799999999999988764332 13678999999999999999999999875 78888987643
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------HHHHHHhHhCC--CCCCCcEEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------QTILYTIFEWP--SIPGSKLVL 334 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------~~~L~~l~~~~--~~~~~~vil 334 (490)
...+.|.+...+...|..+.. ..|+||||||+|.+.... ...+.+++.+. .....+++|
T Consensus 275 ---------~sk~~gese~~lr~lF~~A~~--~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 275 ---------MSKLAGESESNLRKAFEEAEK--NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ---------HSSCTTHHHHHHHHHHHHHTT--SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred ---------hcccchHHHHHHHHHHHHHHH--cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 225666777778877776654 569999999999997542 12233332211 123467999
Q ss_pred EEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCH-HHH
Q psy200 335 VGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDI-RKA 411 (490)
Q Consensus 335 I~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~-r~a 411 (490)
|++||+. +.+++.+++ ||. ..|.+..++.++..+||+.++.... ...+..++.+++ .+.|-. ..+
T Consensus 344 IaaTN~~---d~LD~ALrR~GRFd---~~I~i~~Pd~~~R~~IL~~~l~~~~---~~~dvdl~~lA~---~T~GfsgaDL 411 (806)
T 3cf2_A 344 MAATNRP---NSIDPALRRFGRFD---REVDIGIPDATGRLEILQIHTKNMK---LADDVDLEQVAN---ETHGHVGADL 411 (806)
T ss_dssp EEECSST---TTSCTTTTSTTSSC---EEEECCCCCHHHHHHHHHHTCSSSE---ECTTCCHHHHHH---HCCSCCHHHH
T ss_pred EEecCCh---hhcCHHHhCCcccc---eEEecCCCCHHHHHHHHHHHhcCCC---CCcccCHHHHHH---hcCCCCHHHH
Confidence 9999965 445666665 666 5899999999999999998776541 112334677776 344432 334
Q ss_pred HHHHHHHHHHHHhccccC------------CcccccCHHHHHHHHHHhccCc
Q psy200 412 IDITNHLIDLTYDNVKEN------------GEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 412 i~ll~~a~~~a~~~~~~~------------~~~~~It~~~v~~a~~~~~~~~ 451 (490)
..+|+.|...|..+.... .....|+.+||..|+..+.+..
T Consensus 412 ~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 412 AALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred HHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 457777776665432110 0134688999999998876544
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.74 E-value=1.2e-16 Score=158.04 Aligned_cols=223 Identities=17% Similarity=0.256 Sum_probs=147.7
Q ss_pred CCCC-C--hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHH
Q psy200 194 CELP-G--REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIV 270 (490)
Q Consensus 194 ~~lv-g--re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~ 270 (490)
++|+ | +......+..++.. ......+++|+||+|+|||++++++++.+... +..+++++|.. +...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~--~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~------~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALEN--LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADD------FAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHT--TTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHH------HHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhC--cCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHH------HHHHHH
Confidence 4454 4 33444444554443 11246799999999999999999999988532 56788997654 233333
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccc--cCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhh
Q psy200 271 NELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALES--RKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRML 348 (490)
Q Consensus 271 ~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~--~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~ 348 (490)
..+.. .... .+...+. ++.+|||||+|.+.. ..+..++.+++.....+ ..+++++++.......+.
T Consensus 82 ~~~~~----~~~~----~~~~~~~---~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~-~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKK----GTIN----EFRNMYK---SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE-KQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHH----TCHH----HHHHHHH---TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT-CEEEEEESSCGGGCTTSC
T ss_pred HHHHc----CcHH----HHHHHhc---CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEecCChHHHHHhh
Confidence 33221 0111 1222222 256999999999986 45666666654322222 345555555433233567
Q ss_pred HHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH---HHh-
Q psy200 349 PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDL---TYD- 424 (490)
Q Consensus 349 ~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~---a~~- 424 (490)
+++.+||..+ ..+.|.| +.+++..++..++... ...+++++++.|++ .. ||+|.+.++|..++.. +..
T Consensus 150 ~~L~sR~~~~-~~i~l~~-~~~e~~~il~~~~~~~--~~~l~~~~l~~l~~---~~-g~~r~l~~~l~~~~~~~~~~l~~ 221 (324)
T 1l8q_A 150 DRLVSRFEGG-ILVEIEL-DNKTRFKIIKEKLKEF--NLELRKEVIDYLLE---NT-KNVREIEGKIKLIKLKGFEGLER 221 (324)
T ss_dssp HHHHHHHHTS-EEEECCC-CHHHHHHHHHHHHHHT--TCCCCHHHHHHHHH---HC-SSHHHHHHHHHHHHHHCHHHHHH
T ss_pred hHhhhcccCc-eEEEeCC-CHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH---hC-CCHHHHHHHHHHHHHcCHHHhcc
Confidence 8888888532 2699999 9999999999998865 45789999999998 45 9999999999888765 000
Q ss_pred ccccCCccccc-CHHHHHHHHHHhccC
Q psy200 425 NVKENGEVTGI-GLKEVLGVISSVYCT 450 (490)
Q Consensus 425 ~~~~~~~~~~I-t~~~v~~a~~~~~~~ 450 (490)
.. ...| +.+++.+++.+.+..
T Consensus 222 ~~-----~~~i~t~~~i~~~~~~~~~~ 243 (324)
T 1l8q_A 222 KE-----RKERDKLMQIVEFVANYYAV 243 (324)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHSC
T ss_pred cc-----ccCCCCHHHHHHHHHHHhCC
Confidence 12 2468 999999999987753
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.73 E-value=3.4e-17 Score=168.45 Aligned_cols=201 Identities=17% Similarity=0.250 Sum_probs=142.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
.++++|+||+|+|||||++++++.+... ++..+++++|.. +...+...+... ... .+...+. .
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~----~~~----~~~~~~~--~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVDSMKEG----KLN----EFREKYR--K 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHHHHHTT----CHH----HHHHHHT--T
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHHHHHcc----cHH----HHHHHhc--C
Confidence 6799999999999999999999988532 356788887654 333444433221 111 2222222 1
Q ss_pred CeEEEEEecCccccc--cCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHH
Q psy200 298 KSILLILDEIDALES--RKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEI 375 (490)
Q Consensus 298 ~~~vI~IDEid~l~~--~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~i 375 (490)
.+.||||||+|.+.. ..++.|+.+++.....+ ..+++++.+.......+.+++.+||..+ ..+.|.+++.+++..+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~-~~iIitt~~~~~~l~~l~~~L~sR~~~g-~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDEETRKSI 271 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT-CEEEEEESSCGGGCSSCCHHHHHHHHSS-BCCBCCCCCHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEECCCHHHHHHHHHHHHhhccCC-eEEEeCCCCHHHHHHH
Confidence 466999999999987 45677777765432223 3455554443332334667888888533 3689999999999999
Q ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 376 ISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 376 l~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
+...+... ...+++++++.|+. .+.||+|.+.++|.++...+...+ ..|+.+++.+++.+..
T Consensus 272 L~~~~~~~--~~~i~~e~l~~la~---~~~gn~R~l~~~L~~~~~~a~~~~------~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 272 ARKMLEIE--HGELPEEVLNFVAE---NVDDNLRRLRGAIIKLLVYKETTG------KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHH--TCCCCTTHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHSS------SCCCHHHHHHHTSTTT
T ss_pred HHHHHHHc--CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHh
Confidence 99998765 35578999999987 678999999999999998887665 3588888888887655
No 49
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=2.5e-17 Score=164.86 Aligned_cols=204 Identities=16% Similarity=0.190 Sum_probs=140.4
Q ss_pred CCCCcchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc---------
Q psy200 179 FSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF--------- 249 (490)
Q Consensus 179 ~~~~~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~--------- 249 (490)
+|.++|+|... ++++|++..++.|..++. ..+...+++|+||+|+||||+++.++..+.....-
T Consensus 3 ~w~~kyrP~~~----~~~vg~~~~~~~l~~~~~---~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 3 LWVDKYRPKSL----NALSHNEELTNFLKSLSD---QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp -CTTTTCCCSG----GGCCSCHHHHHHHHTTTT---CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred cchhccCCCCH----HHhcCCHHHHHHHHHHHh---hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 68999998887 899999998887777661 23444459999999999999999999975311110
Q ss_pred ----------------eEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-----------c-CCCeEE
Q psy200 250 ----------------KTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD-----------T-KHKSIL 301 (490)
Q Consensus 250 ----------------~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~-----------~-~~~~~v 301 (490)
.++.+++..... .....+.+.+..... . .+++.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~v 137 (354)
T 1sxj_E 76 VTASNRKLELNVVSSPYHLEITPSDMGN------------------NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKC 137 (354)
T ss_dssp ----------CCEECSSEEEECCC----------------------CCHHHHHHHHHHHTTTTC------------CCEE
T ss_pred cccccccceeeeecccceEEecHhhcCC------------------cchHHHHHHHHHHHHhccccccccccccCCCCeE
Confidence 112222111100 000012222222111 0 235779
Q ss_pred EEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHh
Q psy200 302 LILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLK 381 (490)
Q Consensus 302 I~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~ 381 (490)
|||||++.|....++.|..+++... ....+|.+++.. ..+.+.+++||. .+.|.+++.+++.+++...+.
T Consensus 138 lilDE~~~L~~~~~~~L~~~le~~~---~~~~~Il~t~~~---~~l~~~l~sR~~----~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 138 VIINEANSLTKDAQAALRRTMEKYS---KNIRLIMVCDSM---SPIIAPIKSQCL----LIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp EEEECTTSSCHHHHHHHHHHHHHST---TTEEEEEEESCS---CSSCHHHHTTSE----EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCccccCHHHHHHHHHHHHhhc---CCCEEEEEeCCH---HHHHHHHHhhce----EEecCCcCHHHHHHHHHHHHH
Confidence 9999999988777888888877532 235556566643 346778999984 899999999999999999988
Q ss_pred ccCCCCCCC-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy200 382 QTDKFNMFN-ASALQLLAGKVAAVSGDIRKAIDITNHLIDLT 422 (490)
Q Consensus 382 ~~~~~~~~~-~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a 422 (490)
.++ ..++ +++++.|++ ...||+|.++++++.+....
T Consensus 208 ~~~--~~~~~~~~l~~i~~---~~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 208 NER--IQLETKDILKRIAQ---ASNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp HHT--CEECCSHHHHHHHH---HHTTCHHHHHHHHTHHHHTT
T ss_pred HcC--CCCCcHHHHHHHHH---HcCCCHHHHHHHHHHHHHhC
Confidence 763 4577 899999987 67899999999999887544
No 50
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=1.2e-16 Score=154.00 Aligned_cols=209 Identities=17% Similarity=0.224 Sum_probs=136.8
Q ss_pred CCCCChHHHHHHHHHH---HHhhhc---cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQF---LLGHVN---NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~---L~~~~~---~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~ 267 (490)
..++|....++.+... +...+. ....++++|+||+|||||++|+++++.+. ..++.++|....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~~~~i~~~~~~------- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----FPFIKICSPDKM------- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----CSEEEEECGGGC-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----CCEEEEeCHHHh-------
Confidence 5677887777666663 333332 45668999999999999999999999864 677888876421
Q ss_pred HHHHHhcCCCCCCcH----HHHHHHHHHHHhcCCCeEEEEEecCccccc------cCH----HHHHHhHhCCCCCCCcEE
Q psy200 268 TIVNELKLKPGGKSE----RHQLGAILKYFDTKHKSILLILDEIDALES------RKQ----TILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~----~~~~~~l~~~l~~~~~~~vI~IDEid~l~~------~~~----~~L~~l~~~~~~~~~~vi 333 (490)
.+... ..+...+..+.. .++.+|||||+|.+.. ..+ +.|..+++.....+..++
T Consensus 102 ----------~g~~~~~~~~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 102 ----------IGFSETAKCQAMKKIFDDAYK--SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ----------TTCCHHHHHHHHHHHHHHHHT--SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ----------cCCchHHHHHHHHHHHHHHHh--cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 11222 222333333322 4578999999999832 222 333344443333566888
Q ss_pred EEEecCCCChhHhhhH-HhhhccCCCCeeEEeCCCCH-HHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH--hhCCHH
Q psy200 334 LVGVANALDLTDRMLP-RLQANVTLQPTLMNFAPYSR-EQILEIISQKLKQTDKFNMFNASALQLLAGKVAA--VSGDIR 409 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~-~l~~R~~~~~~~i~~~pls~-~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~--~~Gd~r 409 (490)
+|+++|.. +.+.+ .+.+||. ..+.|++++. +++..++.+. ..+++++++.+++...+ +.|++|
T Consensus 170 ii~ttn~~---~~l~~~~l~~rf~---~~i~~p~l~~r~~i~~i~~~~-------~~~~~~~~~~l~~~~~g~~~~g~ir 236 (272)
T 1d2n_A 170 IIGTTSRK---DVLQEMEMLNAFS---TTIHVPNIATGEQLLEALELL-------GNFKDKERTTIAQQVKGKKVWIGIK 236 (272)
T ss_dssp EEEEESCH---HHHHHTTCTTTSS---EEEECCCEEEHHHHHHHHHHH-------TCSCHHHHHHHHHHHTTSEEEECHH
T ss_pred EEEecCCh---hhcchhhhhcccc---eEEcCCCccHHHHHHHHHHhc-------CCCCHHHHHHHHHHhcCCCccccHH
Confidence 99999854 33333 5677876 4799999987 7777777652 23688999999884322 244899
Q ss_pred HHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 410 KAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
.++++++.|...+. ....+++.+++.+..
T Consensus 237 ~l~~~l~~a~~~~~----------~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 237 KLLMLIEMSLQMDP----------EYRVRKFLALLREEG 265 (272)
T ss_dssp HHHHHHHHHTTSCG----------GGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhhch----------HHHHHHHHHHHHHcC
Confidence 99999988865432 234666666666554
No 51
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.73 E-value=1e-19 Score=175.06 Aligned_cols=223 Identities=15% Similarity=0.147 Sum_probs=144.7
Q ss_pred CCCCChHHHHHHHHHHHHhhh--------ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV--------NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~--------~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.+..++.|.+++.... ....+.+++|+||+|||||++|+++++++. ..+++++|..+..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~v~~~~~~~---- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH----VPFFSMGGSSFIE---- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT----CCCCCCCSCTTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CCEEEechHHHHH----
Confidence 678999888888887765321 123456799999999999999999999875 4566777765432
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH------------HHHHHhH---hCCCCCCC
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ------------TILYTIF---EWPSIPGS 330 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~------------~~L~~l~---~~~~~~~~ 330 (490)
...+.....+...|..+.. ..+.||||||+|.+..... ..+..++ +.......
T Consensus 83 ----------~~~~~~~~~~~~~~~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 ----------MFVGLGASRVRDLFETAKK--QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp ----------SCSSSCSSSSSTTHHHHHH--SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred ----------hhcchHHHHHHHHHHHHHh--cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 1111222222233443333 3467999999999975421 1122222 21122345
Q ss_pred cEEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCH
Q psy200 331 KLVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDI 408 (490)
Q Consensus 331 ~vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~ 408 (490)
.+++|+++|..+ .+++.+.+ ||. ..+.|.+++.++..+++..++..... .++..++.+++...++ ..
T Consensus 151 ~v~vi~ttn~~~---~ld~~l~r~~Rf~---~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~la~~~~g~--~g 219 (268)
T 2r62_A 151 PVIVLAATNRPE---ILDPALMRPGRFD---RQVLVDKPDFNGRVEILKVHIKGVKL---ANDVNLQEVAKLTAGL--AG 219 (268)
T ss_dssp CCEEEECBSCCT---TSCGGGGSSSSSC---CCCBCCCCCTTTHHHHHHHHTSSSCC---CSSCCTTTTTSSSCSS--CH
T ss_pred CEEEEEecCCch---hcCHhHcCCCCCC---eEEEecCcCHHHHHHHHHHHHhcCCC---CCccCHHHHHHHcCCC--CH
Confidence 689999998653 34455555 665 36899999999999999988865421 1222345565522222 23
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccCcc
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+.+.++|++|...|...+ ...|+.+++..++..+.+...
T Consensus 220 ~dl~~l~~~a~~~a~~~~-----~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 220 ADLANIINEAALLAGRNN-----QKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp HHHHHHHHHHHHTTSSSC-----CCSCCHHHHHTSCTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhc-----cCCcCHHHHHHHHHHHhhcch
Confidence 677789999998887766 568999999999887765544
No 52
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.72 E-value=7.7e-17 Score=166.87 Aligned_cols=217 Identities=18% Similarity=0.218 Sum_probs=151.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++.+.++.+.+..... ...+++++|+||||||||+|+++++..+. ..+++++|..+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~---- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVE---- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTS----
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHH----
Confidence 7899999998888877654211 12356799999999999999999999864 6788998876532
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC--CCeEEEEEecCccccccC-----------HHHHHHhHhC-C-CCCCC
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTK--HKSILLILDEIDALESRK-----------QTILYTIFEW-P-SIPGS 330 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~--~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~-~-~~~~~ 330 (490)
.+.+..... +...+... ..+++|||||||.+.... ...+..++.. . .....
T Consensus 103 ----------~~~g~~~~~----v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~ 168 (499)
T 2dhr_A 103 ----------MFVGVGAAR----VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 168 (499)
T ss_dssp ----------SCTTHHHHH----HHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC
T ss_pred ----------hhhhhHHHH----HHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc
Confidence 122222222 23333322 347899999999986432 1233343322 1 12345
Q ss_pred cEEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHHHHhhCC
Q psy200 331 KLVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFN-ASALQLLAGKVAAVSGD 407 (490)
Q Consensus 331 ~vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~-~~~i~~i~~~i~~~~Gd 407 (490)
.+++++++|..+ .+++.+.+ ||. ..+.|++++.++..+||+.++... .++ +..+..++. .+.|+
T Consensus 169 ~viviAatn~p~---~LD~aLlr~gRfd---r~i~i~~Pd~~~R~~IL~~~~~~~----~l~~dv~l~~lA~---~t~G~ 235 (499)
T 2dhr_A 169 AIVVMAATNRPD---ILDPALLRPGRFD---RQIAIDAPDVKGREQILRIHARGK----PLAEDVDLALLAK---RTPGF 235 (499)
T ss_dssp CCEEEECCSCGG---GSCTTTSSTTSSC---CEEECCCCCHHHHHHHHHHTTSSS----CCCCSSTTHHHHT---TSCSC
T ss_pred cEEEEEecCChh---hcCcccccccccc---eEEecCCCCHHHHHHHHHHHHhcC----CCChHHHHHHHHH---hcCCC
Confidence 678889998653 36666766 555 479999999999999998776543 233 233667776 78888
Q ss_pred H-HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhccC
Q psy200 408 I-RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 408 ~-r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~ 450 (490)
. +.+.++|.+|+..|...+ ...|+++|+..|+..+...
T Consensus 236 ~gadL~~lv~~Aa~~A~~~~-----~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 236 VGADLENLLNEAALLAAREG-----RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp CHHHHHHHHHHHHHHHTTTC-----CSSCCSHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHhC-----CCccCHHHHHHHHHHHhcc
Confidence 7 788899999998888776 5689999999999998754
No 53
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.72 E-value=2.3e-18 Score=186.49 Aligned_cols=226 Identities=17% Similarity=0.234 Sum_probs=133.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.++.++.|.+.+...+. ...++++|||||||||||++|++++++++ ..++.++++.+
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~----~~f~~v~~~~l----- 547 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPEL----- 547 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT----CEEEECCHHHH-----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC----CceEEeccchh-----
Confidence 6788999999998887764332 12567899999999999999999999975 67777754432
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHh---HhCCCCCCC
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTI---FEWPSIPGS 330 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l---~~~~~~~~~ 330 (490)
-..+.|.++..+.+.|..+.. ..|+||||||||.+...+ ...+.++ ++- .....
T Consensus 548 ---------~s~~vGese~~vr~lF~~Ar~--~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg-~~~~~ 615 (806)
T 3cf2_A 548 ---------LTMWFGESEANVREIFDKARQ--AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG-MSTKK 615 (806)
T ss_dssp ---------HTTTCSSCHHHHHHHHHHHHT--TCSEEEECSCGGGCC--------------CHHHHHHHHHHHS-SCSSS
T ss_pred ---------hccccchHHHHHHHHHHHHHH--cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC-CCCCC
Confidence 237888899999998887765 468999999999997542 1122333 331 22456
Q ss_pred cEEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-C
Q psy200 331 KLVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-D 407 (490)
Q Consensus 331 ~vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d 407 (490)
.|+||++||+. +.+++.+.+ ||. ..|+|+.++.++..+||+.++.+.. .-.+..++.|++...+++| |
T Consensus 616 ~V~vi~aTN~p---~~lD~AllRpgRfd---~~i~v~lPd~~~R~~il~~~l~~~~---~~~~~dl~~la~~t~g~SGad 686 (806)
T 3cf2_A 616 NVFIIGATNRP---DIIDPAILRPGRLD---QLIYIPLPDEKSRVAILKANLRKSP---VAKDVDLEFLAKMTNGFSGAD 686 (806)
T ss_dssp SEEEECC-CCS---SSSCHHHHSTTTSC---CEEEC-----CHHHHTTTTTSSCC-----CCC----------------C
T ss_pred CEEEEEeCCCc---hhCCHhHcCCCcce---EEEEECCcCHHHHHHHHHHHhcCCC---CCCCCCHHHHHHhCCCCCHHH
Confidence 79999999965 456677766 777 5899999999999999988776541 1233447778876655555 5
Q ss_pred HHHHHHHHHHHHHHHHhccccC--------------------CcccccCHHHHHHHHHHhccCcc
Q psy200 408 IRKAIDITNHLIDLTYDNVKEN--------------------GEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 408 ~r~ai~ll~~a~~~a~~~~~~~--------------------~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+. ++|+.|...|.++.... .....|+++||.+|+..+.++..
T Consensus 687 i~---~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 687 LT---EICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp HH---HHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC--------
T ss_pred HH---HHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 44 46667766665432110 11346999999999999877644
No 54
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.72 E-value=2.2e-17 Score=161.56 Aligned_cols=215 Identities=17% Similarity=0.235 Sum_probs=145.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
++++|+...+..+.+.+.... ....+++|+|++|||||++|+++++... ..+..++.++|..... ..+...++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a--~~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~~~v~v~~~~~~~-~l~~~~lfg~~ 77 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA--PSDATVLIHGDSGTGKELVARALHACSA-RSDRPLVTLNCAALNE-SLLESELFGHE 77 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC--STTSCEEEESCTTSCHHHHHHHHHHHSS-CSSSCCCEEECSSCCH-HHHHHHHTCCC
T ss_pred CCcEECCHHHHHHHHHHHHHh--CCCCcEEEECCCCchHHHHHHHHHHhCc-ccCCCeEEEeCCCCCh-HHHHHHhcCcc
Confidence 468999999999999888743 4567899999999999999999988653 2345789999998732 22222222111
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
...+.+... .....|..+ . ..+||||||+.+....|..|+.+++.... ....+.+|++||.. +.+
T Consensus 78 ~g~~tg~~~-~~~g~~~~a-~----~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~-l~~ 150 (304)
T 1ojl_A 78 KGAFTGADK-RREGRFVEA-D----GGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD-LAE 150 (304)
T ss_dssp SSCCC---C-CCCCHHHHH-T----TSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC-HHH
T ss_pred ccccCchhh-hhcCHHHhc-C----CCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc-HHH
Confidence 111111111 111122221 1 13899999999998888888887764321 13457888888853 222
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----C-CCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----D-KFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~-~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+.+.+..|+.. ..+.++|+. .+++..++.+++... + ....+++++++.+.. +.|.||+|.+.+
T Consensus 151 ~v~~g~fr~~L~~Rl~~--~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~--~~wpGnvReL~~ 226 (304)
T 1ojl_A 151 EVSAGRFRQDLYYRLNV--VAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH--YDWPGNIRELEN 226 (304)
T ss_dssp HHHHTSSCHHHHHHHSS--EEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH--CCCSSHHHHHHH
T ss_pred HHHhCCcHHHHHhhcCe--eEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc--CCCCCCHHHHHH
Confidence 245678888852 368899998 678887777766543 2 234689999999987 567999999999
Q ss_pred HHHHHHHHHH
Q psy200 414 ITNHLIDLTY 423 (490)
Q Consensus 414 ll~~a~~~a~ 423 (490)
++++++..+.
T Consensus 227 ~l~~~~~~~~ 236 (304)
T 1ojl_A 227 AIERAVVLLT 236 (304)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999987654
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=1.3e-16 Score=161.14 Aligned_cols=234 Identities=17% Similarity=0.196 Sum_probs=150.4
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------------------------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcC
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------------------------NETSGSMYISGPPGTGKSASLNLLVSRAEIKD 247 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------------------------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~ 247 (490)
+.++|+++.++.|..++...+. .....+++|+||||||||++|+++++.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~--- 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD--- 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT---
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC---
Confidence 7899999999999888732110 12467899999999999999999999874
Q ss_pred CceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHH-HHHHHHHHH---HhcCCCeEEEEEecCcccccc----------
Q psy200 248 AFKTIYINCNSVRNAASVYETIVNELKLKPGGKSER-HQLGAILKY---FDTKHKSILLILDEIDALESR---------- 313 (490)
Q Consensus 248 ~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~-~~~~~l~~~---l~~~~~~~vI~IDEid~l~~~---------- 313 (490)
..++.++|...... . +.+.... .+...+... +.. ....+|||||++.+...
T Consensus 98 -~~~~~~~~~~~~~~-~------------~~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEi~~l~~~~~~~~~~~~~ 162 (376)
T 1um8_A 98 -IPIAISDATSLTEA-G------------YVGEDVENILTRLLQASDWNVQK-AQKGIVFIDEIDKISRLSENRSITRDV 162 (376)
T ss_dssp -CCEEEEEGGGCC---------------------CTHHHHHHHHHTTTCHHH-HTTSEEEEETGGGC-------------
T ss_pred -CCEEEecchhhhhc-C------------cCCccHHHHHHHHHhhccchhhh-cCCeEEEEcCHHHHhhhcCCCceeccc
Confidence 67888888876321 1 1111111 122222111 111 12459999999999876
Q ss_pred ----CHHHHHHhHhCCC------------------CCCCcEEEEEecCCCChh---------------------------
Q psy200 314 ----KQTILYTIFEWPS------------------IPGSKLVLVGVANALDLT--------------------------- 344 (490)
Q Consensus 314 ----~~~~L~~l~~~~~------------------~~~~~vilI~~tn~~~~~--------------------------- 344 (490)
.++.|+.+++... ....++++|+++|..++.
T Consensus 163 ~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~ 242 (376)
T 1um8_A 163 SGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAI 242 (376)
T ss_dssp -CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTS
T ss_pred chHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHH
Confidence 5677888877321 112456777777632111
Q ss_pred -----------HhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHH----H-------HhccCCCCCCCHHHHHHHHHHHH
Q psy200 345 -----------DRMLPRLQANVTLQPTLMNFAPYSREQILEIISQ----K-------LKQTDKFNMFNASALQLLAGKVA 402 (490)
Q Consensus 345 -----------~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~----~-------l~~~~~~~~~~~~~i~~i~~~i~ 402 (490)
..+.+.+.+||+ ..+.|+|++.+++..++.. . +...+....+++++++.|++...
T Consensus 243 ~~~~~~~~l~~~~~~p~l~~R~~---~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 319 (376)
T 1um8_A 243 LHLVQTHDLVTYGLIPELIGRLP---VLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLAL 319 (376)
T ss_dssp GGGCCHHHHHHTTCCHHHHTTCC---EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred HhhcCHHHHhhcCCChHHhcCCC---ceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhc
Confidence 124577888887 4799999999999998862 1 21122345689999999998443
Q ss_pred HhhCCHHHHHHHHHHHHHHHHhcccc-CCcccccCHHHHHHHHHHhc
Q psy200 403 AVSGDIRKAIDITNHLIDLTYDNVKE-NGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 403 ~~~Gd~r~ai~ll~~a~~~a~~~~~~-~~~~~~It~~~v~~a~~~~~ 448 (490)
...||+|.+.+++++++..+..+... ......|+.++|..+...+.
T Consensus 320 ~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 366 (376)
T 1um8_A 320 ERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 366 (376)
T ss_dssp HTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEE
T ss_pred ccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCcee
Confidence 34599999999999998765544311 11123689999887654433
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=9.4e-17 Score=157.61 Aligned_cols=218 Identities=14% Similarity=0.192 Sum_probs=151.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc-----CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN-----ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~-----~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
+.++|++..++.|...+...... .+..+++|+||+|||||++|+++++.+. .....+++++|........ ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~-~~~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH-SCGGGEEEEEGGGCCSTTH-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc-CCCcceEEeeccccccccc-HHH
Confidence 78999999999999988875321 1235899999999999999999999874 2234688999987754322 222
Q ss_pred HHHHhcCC--CCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCC--------CCcEEEEEec
Q psy200 269 IVNELKLK--PGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIP--------GSKLVLVGVA 338 (490)
Q Consensus 269 i~~~l~~~--~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~--------~~~vilI~~t 338 (490)
++ +.. ..+.... ..+..++.. ....+|||||++.+....+..|+.+++..... -.++++|+++
T Consensus 95 l~---g~~~~~~~~~~~---~~~~~~~~~-~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 95 LI---GAPPGYVGYEEG---GQLTEAVRR-RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp HH---CCCTTSTTTTTC---CHHHHHHHH-CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred hc---CCCCcccccccc---chHHHHHHh-CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 21 111 1111110 123333332 23469999999999888888888887643211 1367788999
Q ss_pred CCC---------------Ch--------hHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-------CCCCC
Q psy200 339 NAL---------------DL--------TDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-------DKFNM 388 (490)
Q Consensus 339 n~~---------------~~--------~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-------~~~~~ 388 (490)
|.. ++ ...+.+.+.+||. ..+.|.|++.+++..|+.+.+... +....
T Consensus 168 n~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~---~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 244 (311)
T 4fcw_A 168 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLD---EIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLE 244 (311)
T ss_dssp STTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCS---EEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEE
T ss_pred ccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCC---eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 862 21 3355678889997 489999999999999998877653 22456
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy200 389 FNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTY 423 (490)
Q Consensus 389 ~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~ 423 (490)
+++++++.+++......||+|.+.+++++++..+.
T Consensus 245 ~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 245 LTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp ECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred eCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 89999999997222227999999998888876544
No 57
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.69 E-value=1.5e-16 Score=152.74 Aligned_cols=216 Identities=17% Similarity=0.150 Sum_probs=139.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
+.++|++..+..+.+.+.... ....+++|+|++|||||++|+++++.+. ..+..+++++|.... ...+...++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~--~~~~~vll~G~~GtGKt~la~~i~~~~~-~~~~~~~~v~~~~~~-~~~~~~~l~g~~ 81 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA--PLDKPVLIIGERGTGKELIASRLHYLSS-RWQGPFISLNCAALN-ENLLDSELFGHE 81 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT--TSCSCEEEECCTTSCHHHHHHHHHHTST-TTTSCEEEEEGGGSC-HHHHHHHHHCCC
T ss_pred ccceeCCHHHHHHHHHHHHHh--CCCCCEEEECCCCCcHHHHHHHHHHhcC-ccCCCeEEEecCCCC-hhHHHHHhcCCc
Confidence 568999999999988887643 3457899999999999999999988764 234578999999873 222222222111
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC--------CCCCcEEEEEecCCC--Ch
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS--------IPGSKLVLVGVANAL--DL 343 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~--------~~~~~vilI~~tn~~--~~ 343 (490)
...+.+.... ....+.. . ...+|||||++.+....|..|+.+++... .....+.+|+++|.. ++
T Consensus 82 ~~~~~g~~~~-~~~~l~~--a---~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~ 155 (265)
T 2bjv_A 82 AGAFTGAQKR-HPGRFER--A---DGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (265)
T ss_dssp ---------C-CCCHHHH--T---TTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH
T ss_pred cccccccccc-ccchhhh--c---CCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH
Confidence 1111111000 0011111 1 12499999999999888888888876321 112457788888853 11
Q ss_pred h--HhhhHHhhhccCCCCeeEEeCCCCH--HHHHHHHHHHHhcc----CCC--CCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 344 T--DRMLPRLQANVTLQPTLMNFAPYSR--EQILEIISQKLKQT----DKF--NMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 344 ~--~~l~~~l~~R~~~~~~~i~~~pls~--~e~~~il~~~l~~~----~~~--~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
. ..+.+.+.+||.. ..+.++|+.. +++..++.+++... +.. ..+++++++.+.. +.|.||+|.+.+
T Consensus 156 ~~~~~~~~~L~~Rl~~--~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~--~~~~gn~reL~~ 231 (265)
T 2bjv_A 156 VNEGTFRADLLDALAF--DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLN--YRWPGNIRELKN 231 (265)
T ss_dssp HHHTSSCHHHHHHHCS--EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHH--SCCTTHHHHHHH
T ss_pred HHcCCccHHHHHhhcC--cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHh--CCCCCCHHHHHH
Confidence 1 1245788888853 3688999985 77777766655432 222 2689999999976 467899999999
Q ss_pred HHHHHHHHHH
Q psy200 414 ITNHLIDLTY 423 (490)
Q Consensus 414 ll~~a~~~a~ 423 (490)
++++++..+.
T Consensus 232 ~l~~~~~~~~ 241 (265)
T 2bjv_A 232 VVERSVYRHG 241 (265)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhCC
Confidence 9999987664
No 58
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.67 E-value=4.5e-15 Score=142.90 Aligned_cols=231 Identities=15% Similarity=0.168 Sum_probs=141.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
+++.|.++.++.|.+.+...+. -..+++++|+||+|||||||+++++..+. ..++++++....+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~--- 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLN--- 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCS---
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHh---
Confidence 6789999998888876543221 13445699999999999999999999875 4678888766532
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------HHHHHHh---HhCCCCCCCcEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------QTILYTI---FEWPSIPGSKLV 333 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------~~~L~~l---~~~~~~~~~~vi 333 (490)
.+.+.....+...+..+.. ..++++|+||++.+.... ...+..+ ++- ......++
T Consensus 83 -----------~~~~~~~~~i~~vf~~a~~--~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsg-g~~~~~~i 148 (274)
T 2x8a_A 83 -----------MYVGESERAVRQVFQRAKN--SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDG-LEARQQVF 148 (274)
T ss_dssp -----------STTHHHHHHHHHHHHHHHH--TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHT-CCSTTCEE
T ss_pred -----------hhhhHHHHHHHHHHHHHHh--cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhc-ccccCCEE
Confidence 1111222333334443322 457899999999875431 1112222 221 12345678
Q ss_pred EEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHH
Q psy200 334 LVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRK 410 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ 410 (490)
+++++|.. +.+++.+.+ ||. ..|.++.++.++..+|++..+........-.+..++.++.... +.| ....
T Consensus 149 ~ia~tn~p---~~LD~al~r~gRfd---~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~sgad 221 (274)
T 2x8a_A 149 IMAATNRP---DIIDPAILRPGRLD---KTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLR-CDCYTGAD 221 (274)
T ss_dssp EEEEESCG---GGSCHHHHSTTSSC---EEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSG-GGSCCHHH
T ss_pred EEeecCCh---hhCCHhhcCcccCC---eEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhc-cCCcCHHH
Confidence 88888854 445677765 776 5899999999999999998775421111112233556654111 123 3344
Q ss_pred HHHHHHHHHHHHHhccccC------CcccccCHHHHHHHHHHhccCcc
Q psy200 411 AIDITNHLIDLTYDNVKEN------GEVTGIGLKEVLGVISSVYCTSQ 452 (490)
Q Consensus 411 ai~ll~~a~~~a~~~~~~~------~~~~~It~~~v~~a~~~~~~~~~ 452 (490)
+.++|+.|...|.++.... .....|+.+||..|+..+.++..
T Consensus 222 l~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 222 LSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 4567888877765532110 11347999999999998876544
No 59
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.67 E-value=5.9e-16 Score=155.50 Aligned_cols=230 Identities=16% Similarity=0.188 Sum_probs=152.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhc-----------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN-----------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA 262 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~-----------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~ 262 (490)
+.++|++..++.|...+..... .....+++|+||||||||++|+++++.+. ..++.++|......
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~----~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD----VPFTMADATTLTEA 90 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHTTC
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCEEEechHHhccc
Confidence 5689999999999888843221 12567899999999999999999999874 67888988754321
Q ss_pred HHHHHHHHHHhcCCCCCCc-HHHHHHHHHHH---HhcCCCeEEEEEecCcccccc--------------CHHHHHHhHhC
Q psy200 263 ASVYETIVNELKLKPGGKS-ERHQLGAILKY---FDTKHKSILLILDEIDALESR--------------KQTILYTIFEW 324 (490)
Q Consensus 263 ~~l~~~i~~~l~~~~~~~s-~~~~~~~l~~~---l~~~~~~~vI~IDEid~l~~~--------------~~~~L~~l~~~ 324 (490)
. ++. .. ...+...+..+ +.. ..+.||||||++.+... .+..|+.+++-
T Consensus 91 ~-~~g------------~~~~~~~~~~~~~~~~~~~~-~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 91 G-YVG------------EDVENIIQKLLQKCDYDVQK-AQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp H-HHH------------HHHTHHHHHHHHHTTTCHHH-HHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred c-ccc------------ccHHHHHHHHHHHhhhhHHh-cCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence 1 100 01 11112222211 000 13569999999999866 47778888771
Q ss_pred C------------------CCCCCcEEEEEecCCCChhH-------------------------------------h---
Q psy200 325 P------------------SIPGSKLVLVGVANALDLTD-------------------------------------R--- 346 (490)
Q Consensus 325 ~------------------~~~~~~vilI~~tn~~~~~~-------------------------------------~--- 346 (490)
. .....++++|++++..++.. .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~ 236 (363)
T 3hws_A 157 TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIK 236 (363)
T ss_dssp C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHH
T ss_pred ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHH
Confidence 1 11334566666666432111 0
Q ss_pred --hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHH----HH-------hccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 347 --MLPRLQANVTLQPTLMNFAPYSREQILEIISQ----KL-------KQTDKFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 347 --l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~----~l-------~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
+.+.|.+||. ..+.|.|++.+++.+|+.. .+ ...+....+++++++.|++..+.+.|+.|.+-+
T Consensus 237 ~~~~~~l~~R~~---~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~ 313 (363)
T 3hws_A 237 FGLIPEFIGRLP---VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRS 313 (363)
T ss_dssp HTCCHHHHTTCC---EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHH
T ss_pred cCCCHHHhcccC---eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHH
Confidence 4577888988 4788999999999888775 22 222234568999999999877788899999999
Q ss_pred HHHHHHHHHHhccccC--CcccccCHHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKEN--GEVTGIGLKEVLGVI 444 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~--~~~~~It~~~v~~a~ 444 (490)
++++++..+..+.... .....|+.++|.+.+
T Consensus 314 ~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 314 IVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp HHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred HHHHHHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 9999987766554221 112357777766544
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.66 E-value=1.5e-15 Score=157.50 Aligned_cols=214 Identities=17% Similarity=0.172 Sum_probs=142.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
+.++||+++++.+...|.. ...++++|+||||||||++++.+++.+... .+..++.++|..
T Consensus 180 d~iiGr~~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~--------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT--------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCcHHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc---------
Confidence 7899999999999998864 556789999999999999999999997421 245677777651
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhH--
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTD-- 345 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~-- 345 (490)
.+.|.....+...+..+.. ..+.||||| .....++.|. .......+.+|++||..++..
T Consensus 247 --------~~~g~~e~~~~~~~~~~~~--~~~~iLfiD----~~~~a~~~L~-----~~L~~g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 --------KYRGEFEDRLKKVMDEIRQ--AGNIILFID----AAIDASNILK-----PSLARGELQCIGATTLDEYRKYI 307 (468)
T ss_dssp --------------CTTHHHHHHHHHT--CCCCEEEEC----C--------C-----CCTTSSSCEEEEECCTTTTHHHH
T ss_pred --------cccchHHHHHHHHHHHHHh--cCCeEEEEe----CchhHHHHHH-----HhhcCCCEEEEecCCHHHHHHHh
Confidence 1122222333444444333 346799999 1111223332 223455789999999766432
Q ss_pred hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHH
Q psy200 346 RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSGD---IRKAIDITNHLID 420 (490)
Q Consensus 346 ~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~Gd---~r~ai~ll~~a~~ 420 (490)
.+++.+.+||. .+.|.+++.+++..||...+... .....+++++++.+++....+.++ .+.+++++..|..
T Consensus 308 ~~~~al~~Rf~----~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 308 EKDAALERRFQ----PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp TTCSHHHHSEE----EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred hcCHHHHHhCc----cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 35688999996 79999999999999999877653 134678999999999866666655 6689999999887
Q ss_pred HHHhccccCCcccccCHHHHHHHHHHh
Q psy200 421 LTYDNVKENGEVTGIGLKEVLGVISSV 447 (490)
Q Consensus 421 ~a~~~~~~~~~~~~It~~~v~~a~~~~ 447 (490)
.+..... ..+..+..+...+..+
T Consensus 384 ~~~~~~~----~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 384 KVRLRSF----TTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHTT----SCCSSTHHHHHHHHHH
T ss_pred HHHhccC----CCchHHHHHHHHHHHH
Confidence 6655442 2344455555555443
No 61
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.66 E-value=1.8e-15 Score=144.17 Aligned_cols=213 Identities=16% Similarity=0.184 Sum_probs=138.1
Q ss_pred CCCCChHHHHHHHHHHHHhhh--------ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV--------NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~--------~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++.+.++.+.....- .-....+++|+||+|+||||++++++..+. ..++++++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~------ 85 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDF------ 85 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHH------
Confidence 678898888777776554321 112345699999999999999999999864 45677765321
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhC--CCCCCCcE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEW--PSIPGSKL 332 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~--~~~~~~~v 332 (490)
.. ...+.....+...+..+. ...+.++|+||+|.+.... ...+..++.. .......+
T Consensus 86 ~~--------~~~~~~~~~i~~~~~~~~--~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 86 VE--------MFVGVGAARVRDLFETAK--RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp HH--------SCTTHHHHHHHHHHHHHT--TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred HH--------HHhhHHHHHHHHHHHHHH--hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11 111122223333333322 1347899999999885331 1122222211 11234457
Q ss_pred EEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHHHHhhCCH-
Q psy200 333 VLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFN-ASALQLLAGKVAAVSGDI- 408 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~-~~~i~~i~~~i~~~~Gd~- 408 (490)
++++++|.. +.+++.+.+ ||. ..+.|++++.++..+|++.++... .+. +..+..++. .+.|+.
T Consensus 156 i~~a~t~~p---~~ld~~l~r~~rf~---~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~---~~~G~~~ 222 (254)
T 1ixz_A 156 VVMAATNRP---DILDPALLRPGRFD---RQIAIDAPDVKGREQILRIHARGK----PLAEDVDLALLAK---RTPGFVG 222 (254)
T ss_dssp EEEEEESCG---GGSCGGGGSTTSSC---EEEECCSCCHHHHHHHHHHHHTTS----CBCTTCCHHHHHH---TCTTCCH
T ss_pred EEEEccCCc---hhCCHHHcCCCcCC---eEEeeCCcCHHHHHHHHHHHHcCC----CCCcccCHHHHHH---HcCCCCH
Confidence 788888854 445677766 565 489999999999999998776543 122 233667776 677765
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
+.+.++|++|...|..++ ...|+++++.+|+
T Consensus 223 ~dl~~~~~~a~~~a~~~~-----~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 223 ADLENLLNEAALLAAREG-----RRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-----CCCcCHHHHHHHh
Confidence 778889999999888776 5689999999875
No 62
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.66 E-value=2.2e-15 Score=145.62 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=139.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhc--------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN--------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASV 265 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~--------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l 265 (490)
++++|.++.++++.......-. -....+++|+||+|+|||||+++++..+. ..++++++..+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~------ 109 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDF------ 109 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHH------
Confidence 6788988888877776543211 12345699999999999999999999874 55677765421
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHh-CC-CCCCCcE
Q psy200 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFE-WP-SIPGSKL 332 (490)
Q Consensus 266 ~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~-~~-~~~~~~v 332 (490)
.. ...+.....+...+..+.. ..+.++|+||++.+.... ...+..++. +. ......+
T Consensus 110 ~~--------~~~~~~~~~i~~~~~~~~~--~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~ 179 (278)
T 1iy2_A 110 VE--------MFVGVGAARVRDLFETAKR--HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 179 (278)
T ss_dssp HH--------STTTHHHHHHHHHHHHHHT--SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCE
T ss_pred HH--------HHhhHHHHHHHHHHHHHHh--cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11 1111222233333443322 347899999999875321 223333332 11 1233457
Q ss_pred EEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHHHHhhCCH-
Q psy200 333 VLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFN-ASALQLLAGKVAAVSGDI- 408 (490)
Q Consensus 333 ilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~-~~~i~~i~~~i~~~~Gd~- 408 (490)
++++++|..+ .+++.+.+ ||. ..+.|.+++.++..+|+..++... .+. +..+..++. .+.|+.
T Consensus 180 i~~a~t~~p~---~ld~~l~r~~rf~---~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~---~~~G~~~ 246 (278)
T 1iy2_A 180 VVMAATNRPD---ILDPALLRPGRFD---RQIAIDAPDVKGREQILRIHARGK----PLAEDVDLALLAK---RTPGFVG 246 (278)
T ss_dssp EEEEEESCTT---SSCHHHHSTTSSC---CEEECCCCCHHHHHHHHHHHHTTS----CBCTTCCHHHHHH---TCTTCCH
T ss_pred EEEEecCCch---hCCHhHcCCCcCC---eEEEeCCcCHHHHHHHHHHHHccC----CCCcccCHHHHHH---HcCCCCH
Confidence 8888888543 35666665 565 479999999999999999877543 222 223666765 677877
Q ss_pred HHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHH
Q psy200 409 RKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVI 444 (490)
Q Consensus 409 r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~ 444 (490)
+.+.++|++|...|..++ ...|+++|+.+|+
T Consensus 247 ~dl~~l~~~a~~~a~~~~-----~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 247 ADLENLLNEAALLAAREG-----RRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhC-----CCCcCHHHHHHHh
Confidence 667789999998888776 5689999999875
No 63
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.66 E-value=2.5e-15 Score=149.93 Aligned_cols=240 Identities=19% Similarity=0.200 Sum_probs=147.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc---CCceEEEEeccCCCCHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK---DAFKTIYINCNSVRNAASVYETIV 270 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~---~~~~~~~v~~~~~~~~~~l~~~i~ 270 (490)
++++|+++.++.+...+. ....++++|+||||||||++|+++++.+... .... ++|..... ......+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~----~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~ 95 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAV----DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEM-IPDWATVL 95 (350)
T ss_dssp GGSCSCHHHHHHHHHHHH----CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGG-SCTTCCCS
T ss_pred hhccChHHHHHHHHHHhh----CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccc---cccccccc-ccchhhhh
Confidence 568999886655433332 2334579999999999999999999987410 0000 12221100 00000000
Q ss_pred HHhcC---------CCCCCcHHHHHHH--HHHHHhcC-----------CCeEEEEEecCccccccCHHHHHHhHhCC---
Q psy200 271 NELKL---------KPGGKSERHQLGA--ILKYFDTK-----------HKSILLILDEIDALESRKQTILYTIFEWP--- 325 (490)
Q Consensus 271 ~~l~~---------~~~~~s~~~~~~~--l~~~l~~~-----------~~~~vI~IDEid~l~~~~~~~L~~l~~~~--- 325 (490)
.+.. ...+.+...+... +...+..+ ....+|||||++.+....++.|+.+++..
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~ 174 (350)
T 1g8p_A 96 -STNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENV 174 (350)
T ss_dssp -CCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEE
T ss_pred -ccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceE
Confidence 0000 0001111111100 00000000 12459999999999988888888877632
Q ss_pred --CCC-----CCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCC-HHHHHHHHHHHHh----------------
Q psy200 326 --SIP-----GSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYS-REQILEIISQKLK---------------- 381 (490)
Q Consensus 326 --~~~-----~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls-~~e~~~il~~~l~---------------- 381 (490)
... ..++++|+++|..+ ..+.+.+.+||+. .+.+.+++ .++..+|+.+++.
T Consensus 175 ~~~~g~~~~~~~~~~li~~~n~~~--~~l~~~L~~R~~~---~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~ 249 (350)
T 1g8p_A 175 VERDGLSIRHPARFVLVGSGNPEE--GDLRPQLLDRFGL---SVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKD 249 (350)
T ss_dssp ECCTTCCEEEECCEEEEEEECSCS--CCCCHHHHTTCSE---EEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEecceEEeeCCceEEEEEeCCCC--CCCCHHHHhhcce---EEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccch
Confidence 111 23789999998532 3567889999973 69999995 5555577655211
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 382 -----------QTDKFNMFNASALQLLAGKVAAVSG-DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 382 -----------~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
.......+++++++.|++......+ ++|.++++|+.|...|..++ ...|+.+|+..++..+..
T Consensus 250 ~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~-----~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 250 MDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG-----ATAVGRDHLKRVATMALS 324 (350)
T ss_dssp HHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT-----CSBCCHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC-----CCcCCHHHHHHHHHHHHh
Confidence 1112346899999999985444444 78999999999999998887 568999999999999887
Q ss_pred Ccc
Q psy200 450 TSQ 452 (490)
Q Consensus 450 ~~~ 452 (490)
...
T Consensus 325 ~r~ 327 (350)
T 1g8p_A 325 HRL 327 (350)
T ss_dssp GGC
T ss_pred hcc
Confidence 665
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=1.2e-14 Score=159.82 Aligned_cols=234 Identities=17% Similarity=0.173 Sum_probs=156.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
++++||+++++.+.+.|.. ....+++|+||||||||++++.+++.+... .+..++.+++.....
T Consensus 186 d~~iGr~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~------ 255 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA------ 255 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C------
T ss_pred CCccCCHHHHHHHHHHHhc----cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc------
Confidence 8899999999999998854 467889999999999999999999987422 134555555443311
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc-----CHHHHHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR-----KQTILYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~-----~~~~L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
+..+.+.....+...+... .. .++.+|||||+|.+... ....+..++. .......+.+|++++..+
T Consensus 256 ------~~~~~g~~e~~l~~~~~~~-~~-~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~-~~l~~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 256 ------GTKYRGDFEKRFKALLKQL-EQ-DTNSILFIDEIHTIIGAGAASGGQVDAANLIK-PLLSSGKIRVIGSTTYQE 326 (758)
T ss_dssp ------CCCCSSCHHHHHHHHHHHH-SS-SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHS-SCSSSCCCEEEEEECHHH
T ss_pred ------cccccchHHHHHHHHHHHH-Hh-cCCeEEEEechHHHhhcCCCCcchHHHHHHHH-HHHhCCCeEEEEEeCchH
Confidence 1123334344444444433 22 34689999999999532 1222223332 122345788888888433
Q ss_pred hhHh--hhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhCC---HHHHHHHH
Q psy200 343 LTDR--MLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSGD---IRKAIDIT 415 (490)
Q Consensus 343 ~~~~--l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~Gd---~r~ai~ll 415 (490)
+... +++++.+||. .+.|.+++.+++.++|...+... .....+++++++.++....++.++ ...+++++
T Consensus 327 ~~~~~~~d~aL~~Rf~----~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~ll 402 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQ----KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_dssp HHCCCCCTTSSGGGEE----EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHH
T ss_pred HhhhhhcCHHHHhCce----EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHH
Confidence 2222 3467888986 79999999999999998776542 124568999999998866555443 45788899
Q ss_pred HHHHHHHHhccccCCcccccCHHHHHHHHHHhccCc
Q psy200 416 NHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTS 451 (490)
Q Consensus 416 ~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~~~ 451 (490)
..|...+...... .....|+.++|..++..+.+.+
T Consensus 403 d~a~~~~~~~~~~-~~~~~v~~~di~~~~~~~~~ip 437 (758)
T 1r6b_X 403 DEAGARARLMPVS-KRKKTVNVADIESVVARIARIP 437 (758)
T ss_dssp HHHHHHHHHSSSC-CCCCSCCHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhccccc-ccCCccCHHHHHHHHHHhcCCC
Confidence 8887766552100 0135799999999999887544
No 65
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.62 E-value=2.2e-14 Score=142.25 Aligned_cols=196 Identities=13% Similarity=0.126 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH---hcC
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE---LKL 275 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~---l~~ 275 (490)
+++.++.+...+.. +..++.++|+||+|+|||++++.+++.+....... ...|..+.+...+...-.-+ +..
T Consensus 7 ~~~~~~~l~~~i~~---~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~--~~~c~~c~~c~~~~~~~~~d~~~~~~ 81 (334)
T 1a5t_A 7 LRPDFEKLVASYQA---GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG--HKSCGHCRGCQLMQAGTHPDYYTLAP 81 (334)
T ss_dssp GHHHHHHHHHHHHT---TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT--TBCCSCSHHHHHHHHTCCTTEEEECC
T ss_pred hHHHHHHHHHHHHc---CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHhcCCCCCEEEEec
Confidence 44555666666642 33456799999999999999999999986322100 01122111111100000000 000
Q ss_pred C--CCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHh
Q psy200 276 K--PGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRL 351 (490)
Q Consensus 276 ~--~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l 351 (490)
. ....+.+.+++.+..+... .++..|+||||+|.|....++.|...++. ....+++|.+++. .+.+.+.+
T Consensus 82 ~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe---p~~~~~~Il~t~~---~~~l~~ti 155 (334)
T 1a5t_A 82 EKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE---PPAETWFFLATRE---PERLLATL 155 (334)
T ss_dssp CTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS---CCTTEEEEEEESC---GGGSCHHH
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC---CCCCeEEEEEeCC---hHhCcHHH
Confidence 0 1123445555544432221 24578999999999988888888888774 3446777777763 46788999
Q ss_pred hhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 352 QANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 352 ~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
++||. .+.|.+++.+++.+++.+++ .+++++++.+++ ...|+++.++++++.+.
T Consensus 156 ~SRc~----~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~---~s~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 156 RSRCR----LHYLAPPPEQYAVTWLSREV-------TMSQDALLAALR---LSAGSPGAALALFQGDN 209 (334)
T ss_dssp HTTSE----EEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHH---HTTTCHHHHHHTTSSHH
T ss_pred hhcce----eeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHH---HcCCCHHHHHHHhccch
Confidence 99995 89999999999999998864 368899888887 67899999998876654
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.62 E-value=5.4e-15 Score=164.36 Aligned_cols=206 Identities=18% Similarity=0.207 Sum_probs=137.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
++++||++++..+.++|.. ...++++|+||||||||++++.+++.+... .+..+++++|.....
T Consensus 170 d~viGr~~~i~~l~~~l~~----~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC----SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cccCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 8899999999999998853 556789999999999999999999988431 256888898865422
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC--------HHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK--------QTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~--------~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
+..+.+.....+...+..+.. .++++||||||+|.+.... .+.|..+++ ...+.+|+++|
T Consensus 240 ------g~~~~g~~~~~l~~~~~~~~~-~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-----~~~i~~I~at~ 307 (854)
T 1qvr_A 240 ------GAKYRGEFEERLKAVIQEVVQ-SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-----RGELRLIGATT 307 (854)
T ss_dssp ------------CHHHHHHHHHHHHHT-TCSSEEEEECCC-------------------HHHHH-----TTCCCEEEEEC
T ss_pred ------cCccchHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-----CCCeEEEEecC
Confidence 112233334444445444333 3468999999999997332 233444443 24577888887
Q ss_pred CCChhH-hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhCC---HHHHHH
Q psy200 340 ALDLTD-RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSGD---IRKAID 413 (490)
Q Consensus 340 ~~~~~~-~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~Gd---~r~ai~ 413 (490)
..++.. .+++.+.+||. .+.|++++.+++..+++..+... .....++++++..+++...++.++ ...+++
T Consensus 308 ~~~~~~~~~d~aL~rRf~----~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQ----PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp HHHHHHHTTCTTTCSCCC----CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred chHHhhhccCHHHHhCCc----eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 433211 23678889996 69999999999999998766533 134568999999999877666555 788999
Q ss_pred HHHHHHHHHHhc
Q psy200 414 ITNHLIDLTYDN 425 (490)
Q Consensus 414 ll~~a~~~a~~~ 425 (490)
++..|...+...
T Consensus 384 lldea~a~~~~~ 395 (854)
T 1qvr_A 384 LIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999988776654
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.61 E-value=3.5e-15 Score=164.02 Aligned_cols=206 Identities=16% Similarity=0.170 Sum_probs=148.7
Q ss_pred CCCCChHHHHHHHHHHHHhhhccC-----CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNE-----TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~-----~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
..++|++..++.|...+.....+. +.++++|+||+|||||++|+++++.+. ..+..+++++|+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~-~~~~~~i~i~~s~~~~~------ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF-GDEESMIRIDMSEYMEK------ 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH-SCTTCEEEEEGGGGCSS------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCcceEEEechhcccc------
Confidence 789999999999999888653221 123699999999999999999999873 34567899999877431
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCC
Q psy200 269 IVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANA 340 (490)
Q Consensus 269 i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~ 340 (490)
.. .+.. .+..++.. ....|||||||+.+....++.|+++++.... ...++++|+++|.
T Consensus 564 --------~~-~~~~----~l~~~~~~-~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 --------HS-TSGG----QLTEKVRR-KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp --------CC-CC-------CHHHHHH-CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred --------cc-cccc----hhhHHHHh-CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 11 1111 12222322 2345999999999988888888888875321 2346788999983
Q ss_pred CC---------hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-------CCCCCCCHHHHHHHHHHHHHh
Q psy200 341 LD---------LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-------DKFNMFNASALQLLAGKVAAV 404 (490)
Q Consensus 341 ~~---------~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-------~~~~~~~~~~i~~i~~~i~~~ 404 (490)
.. +...+.+.+.+||. ..+.|.|++.+++..|+...+... +....+++++++.|++..+.+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~---~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 706 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRID---EIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL 706 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSS---EEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCC---eEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC
Confidence 21 12335688999996 489999999999999988877553 234568999999998866778
Q ss_pred hCCHHHHHHHHHHHHHHHH
Q psy200 405 SGDIRKAIDITNHLIDLTY 423 (490)
Q Consensus 405 ~Gd~r~ai~ll~~a~~~a~ 423 (490)
.||+|.+-+++++++....
T Consensus 707 ~~~~R~L~~~i~~~v~~~l 725 (758)
T 3pxi_A 707 EYGARPLRRAIQKHVEDRL 725 (758)
T ss_dssp TTTTTTHHHHHHHHTHHHH
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 9999998888888765543
No 68
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.61 E-value=4.3e-15 Score=156.59 Aligned_cols=233 Identities=18% Similarity=0.212 Sum_probs=143.7
Q ss_pred CCCCChHHHHHHHHHHHHhhh--ccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHV--NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~--~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
++++|.++....+.+++.-.. ....+.+++|+||||||||+++++++..+. ..+..++|........+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~----~~~~~i~~~~~~~~~~~~g~~~- 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG----RKFVRISLGGVRDESEIRGHRR- 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT----CEEEEECCCC-------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC----CCeEEEEecccchhhhhhhHHH-
Confidence 678999998888876554221 122567899999999999999999999875 5678888877544332221111
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCH----HHHHHhHhCCCC------------CCCcEEEE
Q psy200 272 ELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQ----TILYTIFEWPSI------------PGSKLVLV 335 (490)
Q Consensus 272 ~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~----~~L~~l~~~~~~------------~~~~vilI 335 (490)
.+.+.....+...|..+. ...+ +|||||++.+....+ +.|+.+++.... ....+++|
T Consensus 156 ----~~ig~~~~~~~~~~~~a~--~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 ----TYVGAMPGRIIQGMKKAG--KLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp ------------CHHHHHHTTC--SSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred ----HHhccCchHHHHHHHHhh--ccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111222222222222211 1233 999999999987633 455555432111 11578999
Q ss_pred EecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhc-----cCC---CCCCCHHHHHHHHHHHHHhhCC
Q psy200 336 GVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQ-----TDK---FNMFNASALQLLAGKVAAVSGD 407 (490)
Q Consensus 336 ~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~-----~~~---~~~~~~~~i~~i~~~i~~~~Gd 407 (490)
+++|.. +.+.+.+.+||. .+.|.+|+.++...|+..++.. .+. ...++++++..+++ .+.+.|+
T Consensus 229 ~ttN~~---~~l~~aL~~R~~----vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~-~~~~~~~ 300 (543)
T 3m6a_A 229 ATANNL---ATIPGPLRDRME----IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIR-YYTREAG 300 (543)
T ss_dssp EECSST---TTSCHHHHHHEE----EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHH-HHCCCSS
T ss_pred eccCcc---ccCCHHHHhhcc----eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHH-hCChhhc
Confidence 999954 466788999995 7999999999999998876622 111 34578999999876 3345588
Q ss_pred HHHHHHHHHHHHHHHHhccc-cCCcccccCHHHHHHHHHH
Q psy200 408 IRKAIDITNHLIDLTYDNVK-ENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 408 ~r~ai~ll~~a~~~a~~~~~-~~~~~~~It~~~v~~a~~~ 446 (490)
+|.+-+.++.++..+....- .+.....|+.+++.+++..
T Consensus 301 vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 301 VRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 99887777666655433210 0111457999999988854
No 69
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=2.6e-14 Score=142.15 Aligned_cols=196 Identities=12% Similarity=0.196 Sum_probs=126.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC------CHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR------NAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~------~~~~l~~ 267 (490)
+.|+||+++++.|..++.. ++.++|+|++|+|||+|++.+++.. .+++++|.... +...++.
T Consensus 12 ~~~~gR~~el~~L~~~l~~------~~~v~i~G~~G~GKT~Ll~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN------YPLTLLLGIRRVGKSSLLRAFLNER------PGILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHS------SEEEEEHHHHHHTTTCBCHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhc------CCeEEEECCCcCCHHHHHHHHHHHc------CcEEEEeecccccccCCCHHHHHH
Confidence 5799999999999998864 2799999999999999999999875 26888876543 5566777
Q ss_pred HHHHHhcC-------------------CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccc----cCH---HHHHHh
Q psy200 268 TIVNELKL-------------------KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALES----RKQ---TILYTI 321 (490)
Q Consensus 268 ~i~~~l~~-------------------~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~----~~~---~~L~~l 321 (490)
.+...+.. ........++.+.+.+.....+ +++|||||+|++.. ... ..|..+
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELG-EFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHS-CEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccC-CEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 77665532 0001234555555555444323 89999999999975 222 333344
Q ss_pred HhCCCCCCCcEEEEEecCCCChhHhh------hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHH
Q psy200 322 FEWPSIPGSKLVLVGVANALDLTDRM------LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQ 395 (490)
Q Consensus 322 ~~~~~~~~~~vilI~~tn~~~~~~~l------~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~ 395 (490)
++.. . ++.+|.++....+...+ ...+..|+. ..+.+.|++.+|..+++...+...+ ..++++.+.
T Consensus 159 ~~~~--~--~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~---~~i~l~pl~~~e~~~~l~~~~~~~~--~~~~~~~~~ 229 (350)
T 2qen_A 159 YDSL--P--NLKIILTGSEVGLLHDFLKITDYESPLYGRIA---GEVLVKPFDKDTSVEFLKRGFREVN--LDVPENEIE 229 (350)
T ss_dssp HHHC--T--TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCC---EEEECCCCCHHHHHHHHHHHHHTTT--CCCCHHHHH
T ss_pred HHhc--C--CeEEEEECCcHHHHHHHHhhcCCCCccccCcc---ceeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHH
Confidence 3322 2 34444444321111221 112222322 4799999999999999998776542 346788777
Q ss_pred HHHHHHHHhhCCHHHHHHHH
Q psy200 396 LLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 396 ~i~~~i~~~~Gd~r~ai~ll 415 (490)
.+++ .+|+.+.++..+
T Consensus 230 ~i~~----~tgG~P~~l~~~ 245 (350)
T 2qen_A 230 EAVE----LLDGIPGWLVVF 245 (350)
T ss_dssp HHHH----HHTTCHHHHHHH
T ss_pred HHHH----HhCCCHHHHHHH
Confidence 7765 555555566544
No 70
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.60 E-value=2.3e-15 Score=136.01 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=105.2
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
++++|++++++.+..++.. ....+++|+|++|+|||++++.+++.+... .+..+++++|.....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 91 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA------ 91 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT------
T ss_pred cccccchHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc------
Confidence 7899999999999888853 556789999999999999999999987531 245778887643210
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc--------CHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR--------KQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~--------~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
+....+.....+...+.. +...+++.||||||+|.+... .++.+..+++. .++.+|++++
T Consensus 92 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-----~~~~~i~~~~ 159 (195)
T 1jbk_A 92 ------GAKYRGEFEERLKGVLND-LAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-----GELHCVGATT 159 (195)
T ss_dssp ------TTCSHHHHHHHHHHHHHH-HHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-----TSCCEEEEEC
T ss_pred ------cCCccccHHHHHHHHHHH-HhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-----CCeEEEEeCC
Confidence 001111111122222222 223456789999999999632 25666665542 3566777777
Q ss_pred CCChhH--hhhHHhhhccCCCCeeEEeCCCCHHHHHHHH
Q psy200 340 ALDLTD--RMLPRLQANVTLQPTLMNFAPYSREQILEII 376 (490)
Q Consensus 340 ~~~~~~--~l~~~l~~R~~~~~~~i~~~pls~~e~~~il 376 (490)
..++.. .+.+.+.+||. .+.|.+++.+++.++|
T Consensus 160 ~~~~~~~~~~~~~l~~r~~----~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQ----KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEE----EEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhc----eeecCCCCHHHHHHHh
Confidence 432221 34688999986 6999999999988765
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.57 E-value=1.2e-14 Score=160.05 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=147.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc-----CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN-----ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~-----~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
..++|++..++.|...+.....+ .+.++++|+||+|||||++|+++++.+. ..++.++|+.+.....+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~----~~~~~i~~s~~~~~~~~--- 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYMERHTV--- 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT----CEEEEEEGGGCSSSSCC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc----CCEEEEechhhcchhhH---
Confidence 78999999999998888754321 1334799999999999999999999884 67899999877432100
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCC--------CCcEEEEEecCC
Q psy200 269 IVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIP--------GSKLVLVGVANA 340 (490)
Q Consensus 269 i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~--------~~~vilI~~tn~ 340 (490)
..+.+...|.........+...+.. ....|||||||+.+....++.|+++++..... -.+++||+++|.
T Consensus 531 --~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 531 --SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp --SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred --hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 0011111111111111223333433 33679999999999887888888888743210 146789999985
Q ss_pred CC----------------------hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-------CCCCCCCH
Q psy200 341 LD----------------------LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-------DKFNMFNA 391 (490)
Q Consensus 341 ~~----------------------~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-------~~~~~~~~ 391 (490)
.. +...+.+.+.+||. ..+.|+|++.+++..|+..++... +....+++
T Consensus 608 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~---~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 684 (758)
T 1r6b_X 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD---NIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQ 684 (758)
T ss_dssp SCC-----------------CHHHHHHHSCHHHHTTCS---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECH
T ss_pred chhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCC---cceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCH
Confidence 21 11256788999997 479999999999999999887632 11246899
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy200 392 SALQLLAGKVAAVSGDIRKAIDITNHLIDL 421 (490)
Q Consensus 392 ~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~ 421 (490)
++++.|++......+++|.+.+++++++..
T Consensus 685 ~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 685 EARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 999999983333344588888888877653
No 72
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.55 E-value=1.7e-13 Score=139.07 Aligned_cols=148 Identities=16% Similarity=0.236 Sum_probs=98.6
Q ss_pred eEEEEEecCcccccc------------CHHHHHHhHhCCC-------CCCCcEEEEEecCC-CChhHhhhHHhhhccCCC
Q psy200 299 SILLILDEIDALESR------------KQTILYTIFEWPS-------IPGSKLVLVGVANA-LDLTDRMLPRLQANVTLQ 358 (490)
Q Consensus 299 ~~vI~IDEid~l~~~------------~~~~L~~l~~~~~-------~~~~~vilI~~tn~-~~~~~~l~~~l~~R~~~~ 358 (490)
..+|++||||.+... -|+.|+.+++-.. ....+++|||+... ...+..+.+.|.+||.
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~-- 328 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP-- 328 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCC--
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccc--
Confidence 348999999999754 1457777776321 23567888888720 1112235688999997
Q ss_pred CeeEEeCCCCHHHHHHHHH-----------HHHhccCCCCCCCHHHHHHHHHHHHH-----hhCCHHHHHHHHHHHHHHH
Q psy200 359 PTLMNFAPYSREQILEIIS-----------QKLKQTDKFNMFNASALQLLAGKVAA-----VSGDIRKAIDITNHLIDLT 422 (490)
Q Consensus 359 ~~~i~~~pls~~e~~~il~-----------~~l~~~~~~~~~~~~~i~~i~~~i~~-----~~Gd~r~ai~ll~~a~~~a 422 (490)
.++.|++|+.++...|+. ..+...+....|++++++.|++.... ..++.|.+-++++.++..+
T Consensus 329 -i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~ 407 (444)
T 1g41_A 329 -IRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKI 407 (444)
T ss_dssp -EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHH
T ss_pred -eeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHH
Confidence 369999999999999983 12222345667999999999986543 3578888877777766543
Q ss_pred Hhcccc-CCcccccCHHHHHHHHHHhcc
Q psy200 423 YDNVKE-NGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 423 ~~~~~~-~~~~~~It~~~v~~a~~~~~~ 449 (490)
..+... ....-.|+.+.|...+.....
T Consensus 408 ~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 435 (444)
T 1g41_A 408 SFSASDMNGQTVNIDAAYVADALGEVVE 435 (444)
T ss_dssp HHHGGGCTTCEEEECHHHHHHHHTTTTT
T ss_pred HhhccccCCCeEEEeHHHHHHhcCcccc
Confidence 332111 111346999999887766543
No 73
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.54 E-value=3.5e-14 Score=138.13 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=97.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH--h
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYF--D 294 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l--~ 294 (490)
..+.+++|+||||||||++|++++++++ ..+++++|..+. ..+.|.....+...|..+. .
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~----~~~i~v~~~~l~--------------~~~~g~~~~~i~~~f~~a~~~~ 95 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG----INPIMMSAGELE--------------SGNAGEPAKLIRQRYREAAEII 95 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT----CCCEEEEHHHHH--------------CC---HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEeHHHhh--------------hccCchhHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999985 677888875432 1233344445555555442 1
Q ss_pred cCCCeEEEEEecCccccccC-------------HHHHHHhHhCC----------CCCCCcEEEEEecCCCChhHhhhHHh
Q psy200 295 TKHKSILLILDEIDALESRK-------------QTILYTIFEWP----------SIPGSKLVLVGVANALDLTDRMLPRL 351 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~~~~-------------~~~L~~l~~~~----------~~~~~~vilI~~tn~~~~~~~l~~~l 351 (490)
....++||||||||.+.... +..|..+++-. .....++++|++||..+ .+++.+
T Consensus 96 ~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~---~ld~al 172 (293)
T 3t15_A 96 RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS---TLYAPL 172 (293)
T ss_dssp TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC---C--CHH
T ss_pred hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc---cCCHHH
Confidence 23568999999999987632 14555555411 12356799999999654 334444
Q ss_pred h--hccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC
Q psy200 352 Q--ANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG 406 (490)
Q Consensus 352 ~--~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G 406 (490)
. .||. ..+. .++.++..+|++..+... .++.+.+..+.. ...|
T Consensus 173 ~R~~R~d---~~i~--~P~~~~r~~Il~~~~~~~----~~~~~~l~~~~~---~~~~ 217 (293)
T 3t15_A 173 IRDGRME---KFYW--APTREDRIGVCTGIFRTD----NVPAEDVVKIVD---NFPG 217 (293)
T ss_dssp HHHHHEE---EEEE--CCCHHHHHHHHHHHHGGG----CCCHHHHHHHHH---HSCS
T ss_pred hCCCCCc---eeEe--CcCHHHHHHHHHHhccCC----CCCHHHHHHHhC---CCCc
Confidence 4 3664 2343 349999999999887654 355555555554 5555
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.54 E-value=9.3e-14 Score=152.68 Aligned_cols=196 Identities=16% Similarity=0.149 Sum_probs=132.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
+.++|++++++.+..+|.. ....+++|+||||||||++|+.+++.+... .+..++.+++
T Consensus 180 d~iiG~~~~i~~l~~~l~~----~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCchHHHHHHHHHHhC----CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 7899999999999998864 566789999999999999999999997421 1345666655
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhH--
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTD-- 345 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~-- 345 (490)
+..+.|.....+...+..+.. ..+.||||| .....++.| ........+.+|++||..++..
T Consensus 245 ------g~~~~G~~e~~l~~~~~~~~~--~~~~iLfiD----~~~~~~~~L-----~~~l~~~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 245 ------GTKYRGEFEDRLKKVMDEIRQ--AGNIILFID----AAIDASNIL-----KPSLARGELQCIGATTLDEYRKYI 307 (758)
T ss_dssp --------------CTTHHHHHHHHHT--CCCCEEEEC----C-------------CCCTTSSSCEEEEECCTTTTHHHH
T ss_pred ------cccccchHHHHHHHHHHHHHh--cCCEEEEEc----CchhHHHHH-----HHHHhcCCEEEEeCCChHHHHHHh
Confidence 112233333444555554443 457799999 111123333 2233456789999999766432
Q ss_pred hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHH
Q psy200 346 RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT--DKFNMFNASALQLLAGKVAAVSG---DIRKAIDITNHLID 420 (490)
Q Consensus 346 ~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~--~~~~~~~~~~i~~i~~~i~~~~G---d~r~ai~ll~~a~~ 420 (490)
.+++.+.+||. .+.|.+++.+++..|+...+... .....+++++++.+++....+-+ -...+++++..|..
T Consensus 308 ~~d~al~rRf~----~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 308 EKDAALERRFQ----PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp TTCSHHHHSEE----EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred hccHHHHhhCc----EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHH
Confidence 45788999995 79999999999999999776553 13456899999999886555433 35678888888876
Q ss_pred HHHhc
Q psy200 421 LTYDN 425 (490)
Q Consensus 421 ~a~~~ 425 (490)
.+...
T Consensus 384 ~~~~~ 388 (758)
T 3pxi_A 384 KVRLR 388 (758)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 65543
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.53 E-value=6.6e-14 Score=145.07 Aligned_cols=228 Identities=14% Similarity=0.087 Sum_probs=146.9
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|+++.++.+...+.. +.+++|+||||||||++|+++++.+. ....+.+++|.- .++.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~------~~~VLL~GpPGtGKT~LAraLa~~l~--~~~~f~~~~~~~-~t~~dL~G------ 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS------GESVFLLGPPGIAKSLIARRLKFAFQ--NARAFEYLMTRF-STPEEVFG------ 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH------TCEEEEECCSSSSHHHHHHHGGGGBS--SCCEEEEECCTT-CCHHHHHC------
T ss_pred hhhHHHHHHHHHHHHHHhc------CCeeEeecCchHHHHHHHHHHHHHHh--hhhHHHHHHHhc-CCHHHhcC------
Confidence 7899999999888777753 56999999999999999999998874 223556666653 24433322
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcC-CCeEEEEEecCccccccCHHHHHHhHhCCC--------CCCCcEEEEEecCCCChh
Q psy200 274 KLKPGGKSERHQLGAILKYFDTK-HKSILLILDEIDALESRKQTILYTIFEWPS--------IPGSKLVLVGVANALDLT 344 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~-~~~~vI~IDEid~l~~~~~~~L~~l~~~~~--------~~~~~vilI~~tn~~~~~ 344 (490)
...+..... ...+..+..+. ..+.|||||||+.+....+..|+.+++... ..+.++ +|++||...-.
T Consensus 87 --~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ATN~lpe~ 162 (500)
T 3nbx_X 87 --PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRL-LVAASNELPEA 162 (500)
T ss_dssp --CBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEESSCCCT
T ss_pred --cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhccccCCCc
Confidence 111000000 00111000100 024599999999998888888888876321 112334 56677754222
Q ss_pred HhhhHHhhhccCCCCeeEEeCCCCH-HHHHHHHHHHHhcc---------------------CCCCCCCHHHHHHHHHHHH
Q psy200 345 DRMLPRLQANVTLQPTLMNFAPYSR-EQILEIISQKLKQT---------------------DKFNMFNASALQLLAGKVA 402 (490)
Q Consensus 345 ~~l~~~l~~R~~~~~~~i~~~pls~-~e~~~il~~~l~~~---------------------~~~~~~~~~~i~~i~~~i~ 402 (490)
..+.+.+.+||. ..+.+++++. ++...|+..+.... -....+++++++.+++.+.
T Consensus 163 ~~~~~aLldRF~---~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 163 DSSLEALYDRML---IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQ 239 (500)
T ss_dssp TCTTHHHHTTCC---EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHH---HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHH
Confidence 334568888986 3789999986 66777776543211 0134578888888887553
Q ss_pred H-------hhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 403 A-------VSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 403 ~-------~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
. ...+.|.++.++..|...|...+ ...|+.+|+. ++..+..
T Consensus 240 ~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g-----r~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 240 QLDKLPDAPYVSDRRWKKAIRLLQASAFFSG-----RSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp HHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT-----CSBCCGGGGG-GGGGTSC
T ss_pred HhhcCCCCCccchhHHHHHHHHHHHHHhhcC-----CccccchHHH-HHHhhhh
Confidence 2 13478999999999988999988 6688888888 5544443
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.53 E-value=3.4e-14 Score=157.95 Aligned_cols=220 Identities=15% Similarity=0.194 Sum_probs=147.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhcc-----CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNN-----ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~-----~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
..++|++..++.|...+.....+ .+..+++|+||+|||||++|+++++.+. ..+..+++++|..+..... ...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~-~~~~~~i~i~~~~~~~~~~-~s~ 635 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDMTEYMEKHA-VSR 635 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH-SSGGGEEEECTTTCCSSGG-GGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCcEEEEechhccchhH-HHH
Confidence 46899999999999988765332 1225899999999999999999999874 2245789999988754211 111
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCC--------CCcEEEEEecCC
Q psy200 269 IVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIP--------GSKLVLVGVANA 340 (490)
Q Consensus 269 i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~--------~~~vilI~~tn~ 340 (490)
++..- ..+.|... ...+..++.. ....+||||||+.+....++.|+++++..... -.++++|+++|.
T Consensus 636 l~g~~-~~~~G~~~---~g~l~~~~~~-~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 636 LIGAP-PGYVGYEE---GGQLTEAVRR-RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp C------------------CHHHHHHH-CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred HcCCC-CCCcCccc---cchHHHHHHh-CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 10000 00111111 1122333332 23569999999999888888888888744211 136788999985
Q ss_pred C-----C----------hh--------HhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc-------CCCCCCC
Q psy200 341 L-----D----------LT--------DRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT-------DKFNMFN 390 (490)
Q Consensus 341 ~-----~----------~~--------~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~-------~~~~~~~ 390 (490)
- + +. ..+.+.|.+||. ..+.|.|++.+++..|+.+++... +....++
T Consensus 711 ~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~---~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~ 787 (854)
T 1qvr_A 711 GSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLD---EIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELT 787 (854)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCS---BCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred ChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcC---eEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEEC
Confidence 1 1 11 123467888887 378899999999999998877642 1134689
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy200 391 ASALQLLAGKVAAVSGDIRKAIDITNHLIDLTY 423 (490)
Q Consensus 391 ~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~ 423 (490)
+++++.|++......||+|.+.+++++++..+.
T Consensus 788 ~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 788 EAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 999999998433337999999999988876554
No 77
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=5.2e-13 Score=130.19 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=120.1
Q ss_pred ChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc--CCceEEEEeccCCCCHHHHHHHHHHHhcC
Q psy200 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK--DAFKTIYINCNSVRNAASVYETIVNELKL 275 (490)
Q Consensus 198 gre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~--~~~~~~~v~~~~~~~~~~l~~~i~~~l~~ 275 (490)
|+++.++.|...+.. +..++++|+||+|+|||++++++++.+... ....+++++....
T Consensus 1 g~~~~~~~L~~~i~~----~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---------------- 60 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---------------- 60 (305)
T ss_dssp ---CHHHHHHHHHHT----CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----------------
T ss_pred ChHHHHHHHHHHHHC----CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----------------
Confidence 566777777777764 447789999999999999999999865311 1335566654321
Q ss_pred CCCCCcHHHHHHHHHHHHhc--CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhh
Q psy200 276 KPGGKSERHQLGAILKYFDT--KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQA 353 (490)
Q Consensus 276 ~~~~~s~~~~~~~l~~~l~~--~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~ 353 (490)
..+.+.+++.+..+... .++..|+||||+|.|....++.|...++.+ ....++|.+|+. ..++.+.+++
T Consensus 61 ---~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep---~~~t~fIl~t~~---~~kl~~tI~S 131 (305)
T 2gno_A 61 ---NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP---PEYAVIVLNTRR---WHYLLPTIKS 131 (305)
T ss_dssp ---CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC---CTTEEEEEEESC---GGGSCHHHHT
T ss_pred ---CCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC---CCCeEEEEEECC---hHhChHHHHc
Confidence 12344455544333221 245679999999999988888898888743 345666666653 4678899999
Q ss_pred ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy200 354 NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHL 418 (490)
Q Consensus 354 R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a 418 (490)
| .+.|.+++.+++.+++.+.+. ++++++. ...|+++.++++++..
T Consensus 132 R------~~~f~~l~~~~i~~~L~~~~~-------i~~~~~~-------~~~g~~~~al~~l~~~ 176 (305)
T 2gno_A 132 R------VFRVVVNVPKEFRDLVKEKIG-------DLWEELP-------LLERDFKTALEAYKLG 176 (305)
T ss_dssp T------SEEEECCCCHHHHHHHHHHHT-------THHHHCG-------GGGTCHHHHHHHHHHH
T ss_pred e------eEeCCCCCHHHHHHHHHHHhC-------CCHHHHH-------HHCCCHHHHHHHHHHH
Confidence 8 399999999999999998871 4555552 3589999999887643
No 78
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.49 E-value=2.6e-14 Score=128.60 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=96.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhc------CCceEEEEeccCCCCHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DAFKTIYINCNSVRNAASVYE 267 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~------~~~~~~~v~~~~~~~~~~l~~ 267 (490)
++++|++++++.+.+++.. ....+++|+||+|+|||++++.+++.+... .+..++++++... ..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 91 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSL------IA 91 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHH------HH
T ss_pred chhhcchHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHh------hc
Confidence 7899999999999888853 557789999999999999999999987421 2456777765322 10
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccc---------ccCHHHHHHhHhCCCCCCCcEEEEEec
Q psy200 268 TIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALE---------SRKQTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 268 ~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~---------~~~~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
. ....+.....+...+.. +...+++.+|||||+|.+. ....+.|..+++ ...+++|+++
T Consensus 92 ----~--~~~~~~~~~~~~~~~~~-~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~-----~~~~~ii~~~ 159 (187)
T 2p65_A 92 ----G--AKYRGDFEERLKSILKE-VQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA-----RGELRCIGAT 159 (187)
T ss_dssp ----H--CCSHHHHHHHHHHHHHH-HHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH-----TTCSCEEEEE
T ss_pred ----C--CCchhHHHHHHHHHHHH-HHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh-----cCCeeEEEec
Confidence 0 01111111122223332 3333567899999999997 222345555544 2457788888
Q ss_pred CCCChh--HhhhHHhhhccCCCCeeEEeCCCC
Q psy200 339 NALDLT--DRMLPRLQANVTLQPTLMNFAPYS 368 (490)
Q Consensus 339 n~~~~~--~~l~~~l~~R~~~~~~~i~~~pls 368 (490)
|..++. ..+++.+.+||. .+.+.+++
T Consensus 160 ~~~~~~~~~~~~~~l~~R~~----~i~i~~p~ 187 (187)
T 2p65_A 160 TVSEYRQFIEKDKALERRFQ----QILVEQPS 187 (187)
T ss_dssp CHHHHHHHTTTCHHHHHHEE----EEECCSCC
T ss_pred CHHHHHHHHhccHHHHHhcC----cccCCCCC
Confidence 743321 235788999996 68887764
No 79
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.46 E-value=5.4e-13 Score=134.81 Aligned_cols=227 Identities=17% Similarity=0.168 Sum_probs=153.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|....+.++.+.+... ......++|+|++||||+++++.++.... ...-+++.+||..+. ...+-.+++..-
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~--a~~~~~vli~Ge~GtGK~~lAr~ih~~s~-r~~~~fv~v~~~~~~-~~~~~~elfg~~ 212 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI--SCAECPVLITGESGVGKEVVARLIHKLSD-RSKEPFVALNVASIP-RDIFEAELFGYE 212 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH--TTCCSCEEEECSTTSSHHHHHHHHHHHST-TTTSCEEEEETTTSC-HHHHHHHHHCBC
T ss_pred hhhhhccHHhhHHHHHHHHh--cCCCCCeEEecCCCcCHHHHHHHHHHhcC-CCCCCeEEEecCCCC-HHHHHHHhcCCC
Confidence 46888888888888888763 34567789999999999999999976543 334578999999873 333334443332
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
.+.+.|.... ....|..+ . + -+||||||+.|....|..|.++++.... ....+.+|++||.. +..
T Consensus 213 ~g~~tga~~~-~~g~~~~a--~-~--gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~-l~~ 285 (387)
T 1ny5_A 213 KGAFTGAVSS-KEGFFELA--D-G--GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN-IKE 285 (387)
T ss_dssp TTSSTTCCSC-BCCHHHHT--T-T--SEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC-HHH
T ss_pred CCCCCCcccc-cCCceeeC--C-C--cEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC-HHH
Confidence 2223222111 11122221 1 1 2999999999999889888888764311 12466788888842 222
Q ss_pred -----hhhHHhhhccCCCCeeEEeCCCC--HHHHHHHHHHHHhcc----CCC-CCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 -----RMLPRLQANVTLQPTLMNFAPYS--REQILEIISQKLKQT----DKF-NMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 -----~l~~~l~~R~~~~~~~i~~~pls--~~e~~~il~~~l~~~----~~~-~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
.+.+.+..|+.. ..|.++|+. .+++..++.+++... +.. ..+++++++.+.. +.|.||+|++.+
T Consensus 286 ~~~~g~fr~dl~~rl~~--~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~--~~wpGNvreL~~ 361 (387)
T 1ny5_A 286 LVKEGKFREDLYYRLGV--IEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS--YPWYGNVRELKN 361 (387)
T ss_dssp HHHTTSSCHHHHHHHTT--EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH--SCCTTHHHHHHH
T ss_pred HHHcCCccHHHHHhhcC--CeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh--CCCCcHHHHHHH
Confidence 234556666653 368889987 478887777766543 222 3489999999987 789999999999
Q ss_pred HHHHHHHHHHhccccCCcccccCHHHHHHH
Q psy200 414 ITNHLIDLTYDNVKENGEVTGIGLKEVLGV 443 (490)
Q Consensus 414 ll~~a~~~a~~~~~~~~~~~~It~~~v~~a 443 (490)
++++|+..+. + ..|+.+++-..
T Consensus 362 ~i~~~~~~~~--~------~~i~~~~l~~~ 383 (387)
T 1ny5_A 362 VIERAVLFSE--G------KFIDRGELSCL 383 (387)
T ss_dssp HHHHHHHHCC--S------SEECHHHHHHH
T ss_pred HHHHHHHhCC--C------CcCcHHHCcHh
Confidence 9999987663 2 36888887543
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.45 E-value=2.2e-13 Score=145.68 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=150.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC------------
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN------------ 261 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~------------ 261 (490)
++++|++..++.+...+.. +.+++|+||+||||||+++.++..+... .+..+.+.+.....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~------g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~~~p~i~~~p~g~ 113 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ------KRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDENMPRIKTVPACQ 113 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT------TCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCTTSCEEEEEETTH
T ss_pred ceEECchhhHhhccccccC------CCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccccCCcEEEEecch
Confidence 7899999999888887753 4699999999999999999999977421 22333343322210
Q ss_pred HHHHHHHHHHHhc----------------C-------C----------CCCCcHHHHHHHHH------------------
Q psy200 262 AASVYETIVNELK----------------L-------K----------PGGKSERHQLGAIL------------------ 290 (490)
Q Consensus 262 ~~~l~~~i~~~l~----------------~-------~----------~~~~s~~~~~~~l~------------------ 290 (490)
...+...+..... . . ........++..+.
T Consensus 114 ~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 114 GRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEE
T ss_pred HHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccccccc
Confidence 1122221111000 0 0 00111111111000
Q ss_pred -HHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC------------------CCCCcEEEEEecCCCChhHhhhHHh
Q psy200 291 -KYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS------------------IPGSKLVLVGVANALDLTDRMLPRL 351 (490)
Q Consensus 291 -~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~------------------~~~~~vilI~~tn~~~~~~~l~~~l 351 (490)
..+.. ...-+|||||++.|....++.|+.+++... ....++.||+++|.. ....+.+.|
T Consensus 194 ~g~~~~-a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~-~~~~l~~~l 271 (604)
T 3k1j_A 194 PGMIHR-AHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD-TVDKMHPAL 271 (604)
T ss_dssp CCHHHH-TTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH-HHHHSCHHH
T ss_pred Cceeee-cCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH-HHhhcCHHH
Confidence 00000 122399999999998778888888776321 112467899999853 335678899
Q ss_pred hhccCCCCeeEEeCCC---CHHHHHHHHHHHHhcc---CCCCCCCHHHHHHHHHHHHHhhC-------CHHHHHHHHHHH
Q psy200 352 QANVTLQPTLMNFAPY---SREQILEIISQKLKQT---DKFNMFNASALQLLAGKVAAVSG-------DIRKAIDITNHL 418 (490)
Q Consensus 352 ~~R~~~~~~~i~~~pl---s~~e~~~il~~~l~~~---~~~~~~~~~~i~~i~~~i~~~~G-------d~r~ai~ll~~a 418 (490)
++||......+.|+.. ..+.+..++....... +....+++++++.|.+....+.| +.|.+.++++.|
T Consensus 272 ~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A 351 (604)
T 3k1j_A 272 RSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAA 351 (604)
T ss_dssp HHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHH
T ss_pred HHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHH
Confidence 9998421114565533 4555666664443322 23457899999999986666677 599999999999
Q ss_pred HHHHHhccccCCcccccCHHHHHHHHHH
Q psy200 419 IDLTYDNVKENGEVTGIGLKEVLGVISS 446 (490)
Q Consensus 419 ~~~a~~~~~~~~~~~~It~~~v~~a~~~ 446 (490)
..+|..++ ...|+.+|+.+|+..
T Consensus 352 ~~~A~~~~-----~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 352 GDIAVKKG-----KKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTT-----CSSBCHHHHHHHHHH
T ss_pred HHHHHhcC-----cccccHHHHHHHHHh
Confidence 99998887 678999999999954
No 81
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.44 E-value=3.6e-13 Score=135.10 Aligned_cols=214 Identities=18% Similarity=0.259 Sum_probs=145.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
..++|......++...+... ......++|+|++||||+++++.++....... .++.+||..+.. ..+..+++..-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~--a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~--~fv~vnc~~~~~-~~~~~~lfg~~ 203 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI--AKSKAPVLITGESGTGKEIVARLIHRYSGRKG--AFVDLNCASIPQ-ELAESELFGHE 203 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH--HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS--CEEEEESSSSCT-TTHHHHHHEEC
T ss_pred ccccccchHHHHHHhhhhhh--hccchhheEEeCCCchHHHHHHHHHHhccccC--CcEEEEcccCCh-HHHHHHhcCcc
Confidence 45788888888887777653 24456799999999999999999977654222 389999998743 23333343332
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC--------CCCcEEEEEecCCCChhH
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--------PGSKLVLVGVANALDLTD 345 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--------~~~~vilI~~tn~~~~~~ 345 (490)
.+.+.|.... ....+.. ..+| +||||||+.|....|..|..+++.... ....+.+|++||.. +..
T Consensus 204 ~g~~tga~~~-~~g~~~~--a~~g---tlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~-l~~ 276 (368)
T 3dzd_A 204 KGAFTGALTR-KKGKLEL--ADQG---TLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN-LEE 276 (368)
T ss_dssp SCSSSSCCCC-EECHHHH--TTTS---EEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC-HHH
T ss_pred ccccCCcccc-cCChHhh--cCCC---eEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC-HHH
Confidence 2333322111 1112222 1222 899999999999999999888764311 12356788888842 332
Q ss_pred h-----hhHHhhhccCCCCeeEEeCCCCH--HHHHHHHHHHHhcc----C-CCCCCCHHHHHHHHHHHHHhhCCHHHHHH
Q psy200 346 R-----MLPRLQANVTLQPTLMNFAPYSR--EQILEIISQKLKQT----D-KFNMFNASALQLLAGKVAAVSGDIRKAID 413 (490)
Q Consensus 346 ~-----l~~~l~~R~~~~~~~i~~~pls~--~e~~~il~~~l~~~----~-~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ 413 (490)
. +.+.+..|+.. ..|.++|+.. +++..++.+.+.+. + ....+++++++.+.. +.|.||+|++.+
T Consensus 277 ~v~~g~fr~dL~~rl~~--~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~--~~wpGNvreL~n 352 (368)
T 3dzd_A 277 EIKKGNFREDLYYRLSV--FQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK--QEWKGNVRELKN 352 (368)
T ss_dssp HHHTTSSCHHHHHHHTS--EEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT--CCCTTHHHHHHH
T ss_pred HHHcCCccHHHHHHhCC--eEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh--CCCCcHHHHHHH
Confidence 2 33467777763 3688999987 78888777766543 2 224689999999987 788999999999
Q ss_pred HHHHHHHHHH
Q psy200 414 ITNHLIDLTY 423 (490)
Q Consensus 414 ll~~a~~~a~ 423 (490)
++++++.++.
T Consensus 353 ~i~~~~~~~~ 362 (368)
T 3dzd_A 353 LIERAVILCE 362 (368)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhCC
Confidence 9999987653
No 82
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=7.2e-12 Score=124.61 Aligned_cols=192 Identities=16% Similarity=0.229 Sum_probs=115.1
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC-----CCHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV-----RNAASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~-----~~~~~l~~~ 268 (490)
+.|+||+++++.|.. +.. +.++|+|++|+|||+|++.+++.+. ..++|++|... .+...++..
T Consensus 13 ~~~~gR~~el~~L~~-l~~-------~~v~i~G~~G~GKT~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-------PITLVLGLRRTGKSSIIKIGINELN----LPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-------SEEEEEESTTSSHHHHHHHHHHHHT----CCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-------CcEEEECCCCCCHHHHHHHHHHhcC----CCEEEEEchhhccccCCCHHHHHHH
Confidence 679999999999888 642 5999999999999999999998874 24678887653 355666665
Q ss_pred HHHHhcC--------------------CC----------CCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc----C
Q psy200 269 IVNELKL--------------------KP----------GGKSERHQLGAILKYFDTKHKSILLILDEIDALESR----K 314 (490)
Q Consensus 269 i~~~l~~--------------------~~----------~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~----~ 314 (490)
+...+.. .. .......+.+.+.+ ...++++|||||+|++... .
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQ---ASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHH---TCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHh---cCCCCeEEEEECHHHhhccCchhH
Confidence 5544310 00 01123333333322 1113899999999998752 2
Q ss_pred HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhh------hHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCC
Q psy200 315 QTILYTIFEWPSIPGSKLVLVGVANALDLTDRM------LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNM 388 (490)
Q Consensus 315 ~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l------~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~ 388 (490)
...|..+.+.. . ++.+|.++........+ ...+..|+. ..+.+.|++.++..+++...+...+. .
T Consensus 158 ~~~l~~~~~~~--~--~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~---~~i~l~~l~~~e~~~~l~~~~~~~~~--~ 228 (357)
T 2fna_A 158 LPALAYAYDNL--K--RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAF---STVELKPFSREEAIEFLRRGFQEADI--D 228 (357)
T ss_dssp HHHHHHHHHHC--T--TEEEEEEESSHHHHHHHTTTTCTTSTTTTCCC---EEEEECCCCHHHHHHHHHHHHHHHTC--C
T ss_pred HHHHHHHHHcC--C--CeEEEEEcCchHHHHHHHhccCCCCccccCcc---ceeecCCCCHHHHHHHHHHHHHHcCC--C
Confidence 34555554422 2 34444444422211221 012333322 47999999999999999987754321 1
Q ss_pred CCHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy200 389 FNASALQLLAGKVAAVSGDIRKAIDIT 415 (490)
Q Consensus 389 ~~~~~i~~i~~~i~~~~Gd~r~ai~ll 415 (490)
.++. ..+++ .+|+.+.++..+
T Consensus 229 ~~~~--~~i~~----~t~G~P~~l~~~ 249 (357)
T 2fna_A 229 FKDY--EVVYE----KIGGIPGWLTYF 249 (357)
T ss_dssp CCCH--HHHHH----HHCSCHHHHHHH
T ss_pred CCcH--HHHHH----HhCCCHHHHHHH
Confidence 2222 44443 555555555543
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=1.3e-12 Score=143.82 Aligned_cols=224 Identities=16% Similarity=0.214 Sum_probs=146.0
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
++++|.+++++.|.+++...+. ...+.+++|+||+|||||+++++++..+. ..++.++|....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~----~~~i~v~~~~l~---- 275 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIM---- 275 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT----CEEEEEEHHHHS----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----CcEEEEEchHhh----
Confidence 7899999999999998875332 24567899999999999999999998864 567888875432
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCCCCCCCcEE
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~~~~~~~vi 333 (490)
....+.....+...|..+.. ..+.+|||||++.+.... ...|..+++-. .....++
T Consensus 276 ----------~~~~g~~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~-~~~~~v~ 342 (806)
T 1ypw_A 276 ----------SKLAGESESNLRKAFEEAEK--NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-KQRAHVI 342 (806)
T ss_dssp ----------SSSTTHHHHHHHHHHHHHHH--HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS-CTTSCCE
T ss_pred ----------hhhhhhHHHHHHHHHHHHHh--cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhh-cccccEE
Confidence 13333444555556665544 347899999999987542 23344444422 2446789
Q ss_pred EEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHH
Q psy200 334 LVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKA 411 (490)
Q Consensus 334 lI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~a 411 (490)
+|+++|..+ .+++.+.+ ||. ..+.+..++.++..+++...+.... ...+..+..++. ...|.....
T Consensus 343 vI~atn~~~---~ld~al~r~gRf~---~~i~i~~p~~~~r~~il~~~~~~~~---l~~~~~l~~la~---~t~g~~g~d 410 (806)
T 1ypw_A 343 VMAATNRPN---SIDPALRRFGRFD---REVDIGIPDATGRLEILQIHTKNMK---LADDVDLEQVAN---ETHGHVGAD 410 (806)
T ss_dssp EEEECSCTT---TSCTTTTSTTSSC---EEECCCCCCHHHHHHHHHHTTTTSC---CCTTCCTHHHHH---SCSSCCHHH
T ss_pred EecccCCch---hcCHHHhcccccc---cccccCCCCHHHHHHHHHHHHhcCC---CcccchhHHHHH---hhcCcchHH
Confidence 999998653 34455544 565 4789999999999999988766541 222333555555 344543333
Q ss_pred -HHHHHHHHHHHHhccccC------------CcccccCHHHHHHHHHHhccC
Q psy200 412 -IDITNHLIDLTYDNVKEN------------GEVTGIGLKEVLGVISSVYCT 450 (490)
Q Consensus 412 -i~ll~~a~~~a~~~~~~~------------~~~~~It~~~v~~a~~~~~~~ 450 (490)
..++..+...+....... .....++.+++..++....+.
T Consensus 411 l~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCch
Confidence 345666655544332110 012357788888888876543
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=1.1e-15 Score=168.05 Aligned_cols=202 Identities=17% Similarity=0.221 Sum_probs=131.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhc---------cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVN---------NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAAS 264 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~---------~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~ 264 (490)
++++|.++.++.|.+++...+. -..+.+++|+||||||||+++++++..+. ..++.+++..+.+
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~----~~~i~v~~~~l~~--- 549 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPELLT--- 549 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT----CCCCCCCCSSSTT---
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC----CCEEEEechHhhh---
Confidence 6788998888888877653221 12567899999999999999999999985 4567777776532
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC-----------HHHHHHhHhCC--CCCCCc
Q psy200 265 VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK-----------QTILYTIFEWP--SIPGSK 331 (490)
Q Consensus 265 l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~-----------~~~L~~l~~~~--~~~~~~ 331 (490)
.+.+.....+...|..+... .++||||||||.+.... ...+..++... ......
T Consensus 550 -----------~~~g~~~~~i~~~f~~a~~~--~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~ 616 (806)
T 1ypw_A 550 -----------MWFGESEANVREIFDKARQA--APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp -----------CCTTTSSHHHHHHHHHHHHH--CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------C
T ss_pred -----------hhcCccHHHHHHHHHHHHhc--CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCC
Confidence 45556666666666665543 37899999999986432 12334444332 123467
Q ss_pred EEEEEecCCCChhHhhhHHhhh--ccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHH
Q psy200 332 LVLVGVANALDLTDRMLPRLQA--NVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIR 409 (490)
Q Consensus 332 vilI~~tn~~~~~~~l~~~l~~--R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r 409 (490)
++||++||.. +.+++.+.+ ||. ..+.|++++.++...|++.++..... ..+..++.+++...+.+ -.
T Consensus 617 v~vI~tTN~~---~~ld~allrpgRf~---~~i~~~~p~~~~r~~Il~~~l~~~~~---~~~~~l~~la~~t~g~s--ga 685 (806)
T 1ypw_A 617 VFIIGATNRP---DIIDPAILRPGRLD---QLIYIPLPDEKSRVAILKANLRKSPV---AKDVDLEFLAKMTNGFS--GA 685 (806)
T ss_dssp CBCCCCCBSC---GGGSCTTSSGGGTT---SCCCCCCCCCSHHHHHTTTTTSCC-------CCCCSCSCGGGSSSC--CH
T ss_pred eEEEEecCCc---ccCCHHHhCccccC---ceeecCCCCHHHHHHHHHHHhccCCC---CcccCHHHHHHhccccC--HH
Confidence 8999999954 446677777 887 37999999999999999988765411 11122334443111222 23
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy200 410 KAIDITNHLIDLTYDNV 426 (490)
Q Consensus 410 ~ai~ll~~a~~~a~~~~ 426 (490)
.+-++|+.|...|..+.
T Consensus 686 di~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 686 DLTEICQRACKLAIRES 702 (806)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44457777777776554
No 85
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.41 E-value=2.7e-13 Score=117.55 Aligned_cols=138 Identities=20% Similarity=0.238 Sum_probs=92.2
Q ss_pred CCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc
Q psy200 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK 274 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~ 274 (490)
+++|+...+.++.+.+... .....+++|+||+|||||++|+++++... ..+..++ ++|......
T Consensus 2 ~iiG~s~~~~~~~~~~~~~--a~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~v-~~~~~~~~~------------ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL--SETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEFV-YRELTPDNA------------ 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH--TTCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCCE-EEECCTTTS------------
T ss_pred CceeCCHHHHHHHHHHHHH--hCCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCEE-EECCCCCcc------------
Confidence 5899999999999988764 34567899999999999999999988653 2234667 998876432
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCChhH-----hhhH
Q psy200 275 LKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTD-----RMLP 349 (490)
Q Consensus 275 ~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~-----~l~~ 349 (490)
......+..+ . ..+|||||++.+....|..|+.++.. ....+.+|+++|.. +.+ .+.+
T Consensus 66 --------~~~~~~~~~a-~----~g~l~ldei~~l~~~~q~~Ll~~l~~---~~~~~~~I~~t~~~-~~~~~~~~~~~~ 128 (145)
T 3n70_A 66 --------PQLNDFIALA-Q----GGTLVLSHPEHLTREQQYHLVQLQSQ---EHRPFRLIGIGDTS-LVELAASNHIIA 128 (145)
T ss_dssp --------SCHHHHHHHH-T----TSCEEEECGGGSCHHHHHHHHHHHHS---SSCSSCEEEEESSC-HHHHHHHSCCCH
T ss_pred --------hhhhcHHHHc-C----CcEEEEcChHHCCHHHHHHHHHHHhh---cCCCEEEEEECCcC-HHHHHHcCCCCH
Confidence 1122222222 1 23899999999998888888887743 23456677778742 111 2344
Q ss_pred HhhhccCCCCeeEEeCCC
Q psy200 350 RLQANVTLQPTLMNFAPY 367 (490)
Q Consensus 350 ~l~~R~~~~~~~i~~~pl 367 (490)
.+..|+.. ..|.++|+
T Consensus 129 ~L~~rl~~--~~i~lPpL 144 (145)
T 3n70_A 129 ELYYCFAM--TQIACLPL 144 (145)
T ss_dssp HHHHHHHH--HEEECCCC
T ss_pred HHHHHhcC--CEEeCCCC
Confidence 55555532 25777776
No 86
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.40 E-value=1e-11 Score=131.39 Aligned_cols=195 Identities=11% Similarity=0.142 Sum_probs=129.1
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHH--hhhcCCc-eEEEEeccCCC--CHHHHHHHHHH
Q psy200 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSR--AEIKDAF-KTIYINCNSVR--NAASVYETIVN 271 (490)
Q Consensus 197 vgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~--l~~~~~~-~~~~v~~~~~~--~~~~l~~~i~~ 271 (490)
+||++++++|.++|... .....+.+.|+|++|+||||||+.+++. ......| ..+|++..... +...++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999652 1234578899999999999999999972 2223556 56777766653 57788999999
Q ss_pred HhcCCCC--------CCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCCh
Q psy200 272 ELKLKPG--------GKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDL 343 (490)
Q Consensus 272 ~l~~~~~--------~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~ 343 (490)
.++.... ......+...+.+.+.. +++++||||++|.... + . |....+++|++ +|.....
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~kr~LlVLDdv~~~~~-----~-~---~~~~~gs~ilv--TTR~~~v 277 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALID-RPNTLFVFDDVVQEET-----I-R---WAQELRLRCLV--TTRDVEI 277 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT-STTEEEEEEEECCHHH-----H-H---HHHHTTCEEEE--EESBGGG
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcC-CCcEEEEEECCCCchh-----h-c---ccccCCCEEEE--EcCCHHH
Confidence 9875421 12344556677777763 2389999999999532 1 1 11114444444 3432111
Q ss_pred hHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy200 344 TDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNH 417 (490)
Q Consensus 344 ~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~ 417 (490)
. ..++.....+.+.+++.++.+++|.++.... . .+..+..+++.+...||+++.||.++..
T Consensus 278 ~--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~---~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~ 338 (549)
T 2a5y_B 278 S--------NAASQTCEFIEVTSLEIDECYDFLEAYGMPM---P--VGEKEEDVLNKTIELSSGNPATLMMFFK 338 (549)
T ss_dssp G--------GGCCSCEEEEECCCCCHHHHHHHHHHTSCCC---C----CHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred H--------HHcCCCCeEEECCCCCHHHHHHHHHHHhcCC---C--CchhHHHHHHHHHHHhCCChHHHHHHHH
Confidence 1 1111111369999999999999999874322 1 1244566677777899999999987743
No 87
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.38 E-value=6e-13 Score=115.10 Aligned_cols=137 Identities=8% Similarity=0.097 Sum_probs=91.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
-+++|++..++++.+.+.... ....+++|+|++|||||++|+++++... .+++++|..... .+
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~--~~~~~vll~G~~GtGKt~lA~~i~~~~~-----~~~~~~~~~~~~--~~-------- 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAA--KRTSPVFLTGEAGSPFETVARYFHKNGT-----PWVSPARVEYLI--DM-------- 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHH--TCSSCEEEEEETTCCHHHHHGGGCCTTS-----CEECCSSTTHHH--HC--------
T ss_pred cCceeCCHHHHHHHHHHHHHh--CCCCcEEEECCCCccHHHHHHHHHHhCC-----CeEEechhhCCh--Hh--------
Confidence 468999999999999988654 4567899999999999999999987642 678888875311 00
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCC--ChhHhhhHHh
Q psy200 274 KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANAL--DLTDRMLPRL 351 (490)
Q Consensus 274 ~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~--~~~~~l~~~l 351 (490)
....+.. . ...+|||||++.+....|..|+.+++... ...+.+|+++|.. ++...+.+.+
T Consensus 67 -----------~~~~~~~--a---~~~~l~lDei~~l~~~~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 -----------PMELLQK--A---EGGVLYVGDIAQYSRNIQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp -----------HHHHHHH--T---TTSEEEEEECTTCCHHHHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred -----------hhhHHHh--C---CCCeEEEeChHHCCHHHHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHH
Confidence 1112221 1 12389999999999888888888776432 3456677777632 2211166777
Q ss_pred hhccCCCCeeEEeCCC
Q psy200 352 QANVTLQPTLMNFAPY 367 (490)
Q Consensus 352 ~~R~~~~~~~i~~~pl 367 (490)
..|+.. ..|.++|+
T Consensus 129 ~~rl~~--~~i~lPpL 142 (143)
T 3co5_A 129 AGLFSE--SVVRIPPL 142 (143)
T ss_dssp HHHSSS--EEEEECCC
T ss_pred HHHhcC--cEEeCCCC
Confidence 777653 36788876
No 88
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=8.5e-13 Score=140.31 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=143.6
Q ss_pred cchHHHhhcCCCCCCChHHHHHHHHHHHHhhhccCC-----------CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceE
Q psy200 183 KPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNET-----------SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKT 251 (490)
Q Consensus 183 ~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~~~~~-----------~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~ 251 (490)
.|......+. ..++|++..+..+...+ .++. ..+++|+||||||||++|+++++.+. ..
T Consensus 285 ~~~~l~~~l~-~~I~G~e~vk~al~~~l----~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~-----r~ 354 (595)
T 3f9v_A 285 IRDRIISSIA-PSIYGHWELKEALALAL----FGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP-----RA 354 (595)
T ss_dssp GGGTHHHHTS-STTSCCHHHHHHHTTTT----TCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS-----CE
T ss_pred HHHHHHHhhc-chhcChHHHHHHHHHHH----hCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC-----Cc
Confidence 3443333344 78999998766554333 2221 12899999999999999999988763 11
Q ss_pred EEEeccCCCCHHHHHHHHH-HHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCC---
Q psy200 252 IYINCNSVRNAASVYETIV-NELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSI--- 327 (490)
Q Consensus 252 ~~v~~~~~~~~~~l~~~i~-~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~--- 327 (490)
.+..... .+...+...+. ..+...+. ... ..+.. .. ..+||||||+.+....+..|...++....
T Consensus 355 ~~~~~~~-~~~~~l~~~~~~~~~~g~~~-~~~----G~l~~--A~---~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~ 423 (595)
T 3f9v_A 355 VYTTGKG-STAAGLTAAVVREKGTGEYY-LEA----GALVL--AD---GGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIA 423 (595)
T ss_dssp ECCCTTC-STTTTSEEECSSGGGTSSCS-EEE----CHHHH--HS---SSEECCTTTTCCCSHHHHHHHHHHHSSSEEEE
T ss_pred eecCCCc-cccccccceeeecccccccc-ccC----CeeEe--cC---CCcEEeehhhhCCHhHhhhhHHHHhCCEEEEe
Confidence 1111000 00000000000 00000000 000 01111 11 23999999999998888999888874321
Q ss_pred -------CCCcEEEEEecCCCChhH----------hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhccC------
Q psy200 328 -------PGSKLVLVGVANALDLTD----------RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTD------ 384 (490)
Q Consensus 328 -------~~~~vilI~~tn~~~~~~----------~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~~------ 384 (490)
.+.++.+|+++|...-.. .+.+.+.+||++ .+.+.++...+...++.+.+....
T Consensus 424 ~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl---~~~~~~~~~~e~~~i~~~il~~~~~~~~~~ 500 (595)
T 3f9v_A 424 KAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDL---IFILKDQPGEQDRELANYILDVHSGKSTKN 500 (595)
T ss_dssp SSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSC---CEEECCTTHHHHHHHHHHHHTTTCCCSSSS
T ss_pred cCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeE---EEEeCCCCCHHHHHHHHHHHHHhhcccccc
Confidence 135778999999652111 556788899975 455666655555555555554321
Q ss_pred -----------------CCCCCCHHHHHHHHHHHH------------HhhCCHHHHHHHHHHHHHHHHhccccCCccccc
Q psy200 385 -----------------KFNMFNASALQLLAGKVA------------AVSGDIRKAIDITNHLIDLTYDNVKENGEVTGI 435 (490)
Q Consensus 385 -----------------~~~~~~~~~i~~i~~~i~------------~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~I 435 (490)
....+++++.+.|.+.+. .+.++.|.+.++++.|...|...+ ...|
T Consensus 501 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~-----~~~V 575 (595)
T 3f9v_A 501 IIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL-----KAEV 575 (595)
T ss_dssp TTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS-----SCCS
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC-----cCCC
Confidence 012466666777776433 257889999999999999999988 7799
Q ss_pred CHHHHHHHHHHhc
Q psy200 436 GLKEVLGVISSVY 448 (490)
Q Consensus 436 t~~~v~~a~~~~~ 448 (490)
+.+|+..|+.-+.
T Consensus 576 ~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 576 TREDAERAINIMR 588 (595)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987554
No 89
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.22 E-value=5.1e-10 Score=111.16 Aligned_cols=189 Identities=13% Similarity=0.036 Sum_probs=132.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcC--CceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKD--AFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFD 294 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~--~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~ 294 (490)
.-.+..+|+|+.|.||++.++.+++.+.... .+.++.++. . ....++.+.+...--
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~l~~~~~~~pl 73 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N--------------------TDWNAIFSLCQAMSL 73 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--T--------------------CCHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--C--------------------CCHHHHHHHhcCcCC
Confidence 4577899999999999999999999875322 112222221 1 223334333322111
Q ss_pred cCCCeEEEEEecCcc-ccccCHHHHHHhHhCCCCCCCcEEEEEecCCCC---hhHhhhHHhhhccCCCCeeEEeCCCCHH
Q psy200 295 TKHKSILLILDEIDA-LESRKQTILYTIFEWPSIPGSKLVLVGVANALD---LTDRMLPRLQANVTLQPTLMNFAPYSRE 370 (490)
Q Consensus 295 ~~~~~~vI~IDEid~-l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~---~~~~l~~~l~~R~~~~~~~i~~~pls~~ 370 (490)
.+...||+|||++. +....++.|..+++.+ ....++|.+++..+ -...+.+.+.+||. .+.|.+++..
T Consensus 74 -f~~~kvvii~~~~~kl~~~~~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~----~~~~~~l~~~ 145 (343)
T 1jr3_D 74 -FASRQTLLLLLPENGPNAAINEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRSV----QVTCQTPEQA 145 (343)
T ss_dssp -CCSCEEEEEECCSSCCCTTHHHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTCE----EEEECCCCTT
T ss_pred -ccCCeEEEEECCCCCCChHHHHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCce----EEEeeCCCHH
Confidence 24466999999999 8877788888887643 22344443443322 13467788899985 8999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 371 QILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 371 e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
++..++..++... ...+++++++.+++ ...||++.+++.|+.....+. . ..|+.++|...+....
T Consensus 146 ~l~~~l~~~~~~~--g~~i~~~a~~~l~~---~~~gdl~~~~~elekl~l~~~-~-------~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 146 QLPRWVAARAKQL--NLELDDAANQVLCY---CYEGNLLALAQALERLSLLWP-D-------GKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHHHHHHHHHT--TCEECHHHHHHHHH---SSTTCHHHHHHHHHHHHHHCT-T-------CEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHHH---HhchHHHHHHHHHHHHHHhcC-C-------CCCCHHHHHHHHhhhh
Confidence 9999999999887 45689999999997 678999999999998876541 2 3688888877766543
No 90
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.21 E-value=1.3e-10 Score=124.12 Aligned_cols=194 Identities=15% Similarity=0.140 Sum_probs=120.6
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCc--eEEEEeccCCCCHHHHHHH--
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEI-KDAF--KTIYINCNSVRNAASVYET-- 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~--~~~~v~~~~~~~~~~l~~~-- 268 (490)
..|+||+.+++.|.++|... .+..+.++|+|++|+|||+||..+++.... ...| .++|+++... +...++..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL--KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS--TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcc--cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 67999999999999998642 345678999999999999999999865321 1223 4677777655 33334333
Q ss_pred -HHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCC
Q psy200 269 -IVNELKL-----KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALD 342 (490)
Q Consensus 269 -i~~~l~~-----~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~ 342 (490)
++..++. .........+...+...+....++++|||||+|.. ..+ ++. ..++ .+|.+|....
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l----~~l-~~~~--~ilvTsR~~~ 268 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL----KAF-DSQC--QILLTTRDKS 268 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH----HTT-CSSC--EEEEEESCGG
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH----HHh-cCCC--eEEEECCCcH
Confidence 3445542 12234566677777777766557899999999873 222 222 2333 3443443221
Q ss_pred hhHhhhHHhhhccCCCCeeEEe---CCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 343 LTDRMLPRLQANVTLQPTLMNF---APYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 343 ~~~~l~~~l~~R~~~~~~~i~~---~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
.... +. + ..+.+ .+++.++..++|...+... .... ++....|+ ..+|+.+.+|.++...+
T Consensus 269 ~~~~----~~---~---~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~-~~~~~~i~----~~~~G~PLal~~~a~~l 331 (591)
T 1z6t_A 269 VTDS----VM---G---PKYVVPVESSLGKEKGLEILSLFVNMK--KADL-PEQAHSII----KECKGSPLVVSLIGALL 331 (591)
T ss_dssp GGTT----CC---S---CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGS-CTHHHHHH----HHHTTCHHHHHHHHHHH
T ss_pred HHHh----cC---C---CceEeecCCCCCHHHHHHHHHHHhCCC--cccc-cHHHHHHH----HHhCCCcHHHHHHHHHH
Confidence 1111 00 1 12333 5899999999999887542 1111 23344454 47899999988765543
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.12 E-value=2.3e-10 Score=102.63 Aligned_cols=126 Identities=15% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCCCC----hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 194 CELPG----REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 194 ~~lvg----re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
+++++ +++.++.+..++... ....+..++|+||+|+|||||+++++..+....+..+++++ ..+++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~------~~~~~~~~ 82 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNF-NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD------TKDLIFRL 82 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSC-CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE------HHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhc-cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHH
Confidence 45554 445556666666542 22347889999999999999999999988533445555654 33444444
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcc--ccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 270 VNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDA--LESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 270 ~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~--l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
...+..... .. .+. .+. ++.+|||||++. +....+..++.+++.....+ ..+|.++|
T Consensus 83 ~~~~~~~~~----~~---~~~-~~~---~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~--~~ii~tsn 141 (180)
T 3ec2_A 83 KHLMDEGKD----TK---FLK-TVL---NSPVLVLDDLGSERLSDWQRELISYIITYRYNNL--KSTIITTN 141 (180)
T ss_dssp HHHHHHTCC----SH---HHH-HHH---TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTT--CEEEEECC
T ss_pred HHHhcCchH----HH---HHH-Hhc---CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 433322111 11 111 222 355999999984 34445566767665332122 33444566
No 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.10 E-value=1.9e-09 Score=118.25 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=118.3
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc--eEEEEeccCCCCHHHHHHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF--KTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~--~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
...+||+.++++|.++|.. ....+.+.|+|++|+||||||+.+++.......| .++|++.....+...++..|..
T Consensus 128 k~~VGRe~eLeeL~elL~~---~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHH---CCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhc---cCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4459999999999999974 2346789999999999999999998753222334 4788888877777777777766
Q ss_pred HhcC---CC---CC--C----cHHHHHHHHHHHHh-cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEec
Q psy200 272 ELKL---KP---GG--K----SERHQLGAILKYFD-TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 272 ~l~~---~~---~~--~----s~~~~~~~l~~~l~-~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
.++. .. .+ . ....+.+.+...+. ..+++++|||||+|.. +.+..+ . .+++|++ +|
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~-----eqLe~f-~----pGSRILV--TT 272 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-----KAWNAF-N----LSCKILL--TT 272 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH-----HHHHHH-H----SSCCEEE--EC
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH-----HHHHhh-C----CCeEEEE--ec
Confidence 5432 11 11 0 22334455555552 2467899999999992 333222 2 4455554 34
Q ss_pred CCCChhHhhhHHhhhccCCCCeeEEeC----CCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHH
Q psy200 339 NALDLTDRMLPRLQANVTLQPTLMNFA----PYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414 (490)
Q Consensus 339 n~~~~~~~l~~~l~~R~~~~~~~i~~~----pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~l 414 (490)
. ...... .+..... ..+.+. +++.+|.+++|...+... ..+.. . ..||+++.+|.+
T Consensus 273 R-d~~Va~---~l~g~~v---y~LeL~d~dL~LS~eEA~eLF~~~~g~~------~eeL~----~---eICgGLPLALkL 332 (1221)
T 1vt4_I 273 R-FKQVTD---FLSAATT---THISLDHHSMTLTPDEVKSLLLKYLDCR------PQDLP----R---EVLTTNPRRLSI 332 (1221)
T ss_dssp S-CSHHHH---HHHHHSS---CEEEECSSSSCCCHHHHHHHHHHHHCCC------TTTHH----H---HHCCCCHHHHHH
T ss_pred c-ChHHHH---hcCCCeE---EEecCccccCCcCHHHHHHHHHHHcCCC------HHHHH----H---HHhCCCHHHHHH
Confidence 3 222221 1111101 145555 899999999999885321 11111 1 238899999887
Q ss_pred HHHHH
Q psy200 415 TNHLI 419 (490)
Q Consensus 415 l~~a~ 419 (490)
+...+
T Consensus 333 aGs~L 337 (1221)
T 1vt4_I 333 IAESI 337 (1221)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 93
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.09 E-value=1.8e-09 Score=124.70 Aligned_cols=197 Identities=17% Similarity=0.142 Sum_probs=126.5
Q ss_pred CCCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCc--eEEEEeccCCCCH--HHHHHH
Q psy200 194 CELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEI-KDAF--KTIYINCNSVRNA--ASVYET 268 (490)
Q Consensus 194 ~~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~--~~~~v~~~~~~~~--~~l~~~ 268 (490)
..|+||++++++|.++|.. .....+.+.|+|++|+|||+||+.+++.... ...| .++|++....... ...+..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~--~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWK--LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHT--TTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhh--ccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 6799999999999999964 2345678889999999999999999876432 2223 4668877664322 233566
Q ss_pred HHHHhcCCC-----CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCCCCh
Q psy200 269 IVNELKLKP-----GGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDL 343 (490)
Q Consensus 269 i~~~l~~~~-----~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~~~~ 343 (490)
++..+.... .......+.+.+...+...+++++||||++|... .+.. ...+++ ||.+|....+
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-----~~~~-----~~~~~~--ilvTtR~~~~ 269 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-----VLKA-----FDNQCQ--ILLTTRDKSV 269 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-----HHTT-----TCSSCE--EEEEESSTTT
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-----HHHh-----hcCCCE--EEEEcCCHHH
Confidence 666665432 2345677777777777655568999999999742 2211 123443 3334432222
Q ss_pred hHhhhHHhhhccCCCCeeEEeCC-CCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy200 344 TDRMLPRLQANVTLQPTLMNFAP-YSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLI 419 (490)
Q Consensus 344 ~~~l~~~l~~R~~~~~~~i~~~p-ls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd~r~ai~ll~~a~ 419 (490)
... +......+.+.+ ++.++..++|..+.... ...+. +....| ...||+++.||.++...+
T Consensus 270 ~~~--------~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~-~~~~~i----~~~~~glPLal~~~~~~l 331 (1249)
T 3sfz_A 270 TDS--------VMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLP-AEAHSI----IKECKGSPLVVSLIGALL 331 (1249)
T ss_dssp TTT--------CCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCC-THHHHH----HHHTTTCHHHHHHHHHHH
T ss_pred HHh--------hcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCc-HHHHHH----HHHhCCCHHHHHHHHHHh
Confidence 111 111113688886 99999999999877443 12222 233444 458999999998765544
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.97 E-value=4.8e-09 Score=105.85 Aligned_cols=236 Identities=13% Similarity=0.069 Sum_probs=141.6
Q ss_pred cchHHHhhcCCCCCCChHHHHHHHHHHHHhhh-ccCCCCeEEEECCCCCcHHHHHHHH-HHHhhhcCCceEEEEeccCCC
Q psy200 183 KPKVEEKAKDSCELPGREVQLEGIRQFLLGHV-NNETSGSMYISGPPGTGKSASLNLL-VSRAEIKDAFKTIYINCNSVR 260 (490)
Q Consensus 183 ~~~~~~~~l~~~~lvgre~~~~~l~~~L~~~~-~~~~~~~ill~GppGtGKTtla~~l-~~~l~~~~~~~~~~v~~~~~~ 260 (490)
.|......+. . ++|++..+..|.-.|.... +....-++||.|+||+ ||++++++ ++.+. +.+|.... ..
T Consensus 204 ~~~~l~~sIa-p-I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p-----R~~ft~g~-~s 274 (506)
T 3f8t_A 204 PLTTFARAIA-P-LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP-----RGVYVDLR-RT 274 (506)
T ss_dssp HHHHHHHHHC-C-STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS-----SEEEEEGG-GC
T ss_pred HHHHHHHHhc-c-cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC-----CeEEecCC-CC
Confidence 3444444444 5 9999987666555553200 0001228999999999 99999999 55432 23444322 12
Q ss_pred CHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCCC------CCCCcEEE
Q psy200 261 NAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPS------IPGSKLVL 334 (490)
Q Consensus 261 ~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~------~~~~~vil 334 (490)
+...+... +... .| ..-+ ...+. +..+| +++||||+.+....|..|.+.|+... .-+.++.|
T Consensus 275 s~~gLt~s----~r~~-tG-~~~~-~G~l~--LAdgG---vl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~V 342 (506)
T 3f8t_A 275 ELTDLTAV----LKED-RG-WALR-AGAAV--LADGG---ILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAV 342 (506)
T ss_dssp CHHHHSEE----EEES-SS-EEEE-ECHHH--HTTTS---EEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEE
T ss_pred CccCceEE----EEcC-CC-cccC-CCeeE--EcCCC---eeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEE
Confidence 22222111 1111 11 0000 00111 22222 99999999999999999998876432 12457899
Q ss_pred EEecCCCChhH--------hhhHHhhhccCCCCeeEEe--------------CCCCHHHHHHHHHHHHhccCCCCCCCHH
Q psy200 335 VGVANALDLTD--------RMLPRLQANVTLQPTLMNF--------------APYSREQILEIISQKLKQTDKFNMFNAS 392 (490)
Q Consensus 335 I~~tn~~~~~~--------~l~~~l~~R~~~~~~~i~~--------------~pls~~e~~~il~~~l~~~~~~~~~~~~ 392 (490)
|+++|..+..+ .+-+.+.+||++ .+.+ ..++.+++.+++.. ++.......++++
T Consensus 343 IAA~NP~~~yd~~~s~~~~~Lp~alLDRFDL---i~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~-ar~~~~~p~ls~e 418 (506)
T 3f8t_A 343 LAAINPGEQWPSDPPIARIDLDQDFLSHFDL---IAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLY-AIREHPAPELTEE 418 (506)
T ss_dssp EEEECCCC--CCSCGGGGCCSCHHHHTTCSE---EEETTC--------------CCHHHHHHHHHH-HHHHCSCCEECHH
T ss_pred EEEeCcccccCCCCCccccCCChHHhhheee---EEEecCCCChhHhhcccCCCCCHHHHHHHHHH-HHhcCCCceeCHH
Confidence 99999765211 455788899974 2221 23445556665553 2311124668898
Q ss_pred HHHHHHHHHHHh---------------hCCHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHHHHHhc
Q psy200 393 ALQLLAGKVAAV---------------SGDIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVY 448 (490)
Q Consensus 393 ~i~~i~~~i~~~---------------~Gd~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a~~~~~ 448 (490)
+.+.|.+.+... .-..|.++.+++.|-..|..++ ...|+.+|+..|+.-+.
T Consensus 419 a~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g-----R~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 419 ARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL-----SDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT-----CSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC-----cCCCCHHHHHHHHHHHH
Confidence 888877654322 1247888889999999999999 78999999999987654
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.96 E-value=6.1e-10 Score=96.69 Aligned_cols=106 Identities=21% Similarity=0.303 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
.+..++|+|++|+|||+|+++++..+.. .+..++++++...... ..+ .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~----------------------------~~~---~ 82 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT----------------------------DAA---F 82 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC----------------------------GGG---G
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH----------------------------HHH---h
Confidence 5678999999999999999999998753 3456788877655321 011 2
Q ss_pred CeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC-CCChhHhhhHHhhhccCC
Q psy200 298 KSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN-ALDLTDRMLPRLQANVTL 357 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn-~~~~~~~l~~~l~~R~~~ 357 (490)
++.+|||||++.+....++.|+.+++.....+..++++ +++ .......+ +++.+|+..
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iii-ts~~~p~~l~~~-~~L~SRl~~ 141 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLL-GSEYTPQQLVIR-EDLRTRMAY 141 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEE-EESSCTTTSSCC-HHHHHHGGG
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEE-ECCCCHHHcccc-HHHHHHHhc
Confidence 35599999999987666777888766432223332333 344 22222223 788888864
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.91 E-value=1.5e-09 Score=99.06 Aligned_cols=100 Identities=13% Similarity=0.252 Sum_probs=57.9
Q ss_pred CCCCChH----HHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 194 CELPGRE----VQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 194 ~~lvgre----~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
+++++.. ..++.+..++........+.+++|+|++|+|||++++++++.+.. .+..+++++|. .++..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~-~~~~~~~~~~~------~~~~~~ 97 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK-RNVSSLIVYVP------ELFREL 97 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEEEHH------HHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEhH------HHHHHH
Confidence 4555432 345555566654211112379999999999999999999998852 34577788664 334443
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccc
Q psy200 270 VNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 270 ~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
...+.. .....+.+. +.. ..+|||||++...
T Consensus 98 ~~~~~~----~~~~~~~~~----~~~---~~~lilDei~~~~ 128 (202)
T 2w58_A 98 KHSLQD----QTMNEKLDY----IKK---VPVLMLDDLGAEA 128 (202)
T ss_dssp HHC-------CCCHHHHHH----HHH---SSEEEEEEECCC-
T ss_pred HHHhcc----chHHHHHHH----hcC---CCEEEEcCCCCCc
Confidence 332211 112222222 222 2399999997753
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.85 E-value=1.4e-08 Score=122.37 Aligned_cols=162 Identities=17% Similarity=0.259 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC--CC
Q psy200 202 QLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP--GG 279 (490)
Q Consensus 202 ~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~--~~ 279 (490)
...+...++..++.. +++++|+||||||||++|+.++... .++.++.++++...+...+...+-..+.... .|
T Consensus 1252 DT~R~~~ll~~~l~~--~~~vLL~GPpGtGKT~la~~~l~~~---~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g 1326 (2695)
T 4akg_A 1252 DTIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNS---SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKG 1326 (2695)
T ss_dssp HHHHHHHHHHHHHHH--TCEEEEECSTTSSHHHHHHHHHHSC---SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTT
T ss_pred chHHHHHHHHHHHHC--CCeEEEECCCCCCHHHHHHHHHhcC---CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCC
Confidence 333445555554433 5799999999999999997776654 4578889999887666554443333221100 00
Q ss_pred CcHHHHHHHHHHHHh--cCCCeEEEEEecCcccccc------CHHHHHHhHhCCCC---C-C-----CcEEEEEecCCCC
Q psy200 280 KSERHQLGAILKYFD--TKHKSILLILDEIDALESR------KQTILYTIFEWPSI---P-G-----SKLVLVGVANALD 342 (490)
Q Consensus 280 ~s~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~------~~~~L~~l~~~~~~---~-~-----~~vilI~~tn~~~ 342 (490)
. .+. ..++++||||||++..... ..+.|.++++.... . . .++.+||++|+..
T Consensus 1327 ~-----------~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~ 1395 (2695)
T 4akg_A 1327 L-----------TLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPT 1395 (2695)
T ss_dssp E-----------EEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTT
T ss_pred c-----------cccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCc
Confidence 0 000 1356789999998765433 25677888764311 1 1 3578999999652
Q ss_pred --hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc
Q psy200 343 --LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT 383 (490)
Q Consensus 343 --~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~ 383 (490)
-...+.+++.+||. .+.++.++.+++..|+...+...
T Consensus 1396 ~gGR~~l~~rllRrf~----vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1396 DPGRIPMSERFTRHAA----ILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp STTCCCCCHHHHTTEE----EEECCCCTTTHHHHHHHHHHHHH
T ss_pred cCCCccCChhhhheee----EEEeCCCCHHHHHHHHHHHHHHH
Confidence 11345778888985 89999999999999998887654
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.56 E-value=5.7e-08 Score=94.74 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEecc
Q psy200 200 EVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~ 257 (490)
...++.+..|+...- .....+++|+||+|+|||+|+.++++.+....+..++++++.
T Consensus 134 ~~~~~~~~~~i~~~~-~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 134 MEAFSAILDFVEQYP-SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHCS-CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred HHHHHHHHHHHHhcc-ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 345555566665421 113679999999999999999999998752345677777654
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.35 E-value=4.7e-06 Score=78.52 Aligned_cols=132 Identities=12% Similarity=0.170 Sum_probs=76.4
Q ss_pred HHHHHHhhhccC--CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHH
Q psy200 206 IRQFLLGHVNNE--TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSER 283 (490)
Q Consensus 206 l~~~L~~~~~~~--~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~ 283 (490)
+..+|..++... +.++++|+||||||||+++.++++.+. . ...++.... .+
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~----l-~G~vn~~~~----------------~f------ 141 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP----F-YGCVNWTNE----------------NF------ 141 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS----C-EEECCTTCS----------------SC------
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc----c-cceeecccc----------------cc------
Confidence 344455554443 346899999999999999999998753 1 111121100 00
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCccccccCHHHHHHhHhCC------------CCCCCcEEEEEecCCCChh-------
Q psy200 284 HQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWP------------SIPGSKLVLVGVANALDLT------- 344 (490)
Q Consensus 284 ~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~------------~~~~~~vilI~~tn~~~~~------- 344 (490)
.+.......|++.||.... ...+..+..+++-. +....+ +|.++|..-..
T Consensus 142 --------~l~~~~~k~i~l~Ee~~~~-~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tP--vIitsN~~i~~~~~g~~~ 210 (267)
T 1u0j_A 142 --------PFNDCVDKMVIWWEEGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTP--VIVTSNTNMCAVIDGNST 210 (267)
T ss_dssp --------TTGGGSSCSEEEECSCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCC--EEEEESSCTTCEEETTEE
T ss_pred --------ccccccccEEEEeccccch-hHHHHHHHHHhCCCcEEEecCcCCcccccCCC--EEEEecCCcccccccCcc
Confidence 0111122346666666554 45556677776511 112233 44456631000
Q ss_pred -HhhhHHhhhccCCCCeeEEeC--------CCCHHHHHHHHHHH
Q psy200 345 -DRMLPRLQANVTLQPTLMNFA--------PYSREQILEIISQK 379 (490)
Q Consensus 345 -~~l~~~l~~R~~~~~~~i~~~--------pls~~e~~~il~~~ 379 (490)
+...+.|++|+. .+.|. +++.++...+|...
T Consensus 211 s~~~~~~L~sR~~----~f~F~~~~p~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 211 TFEHQQPLQDRMF----KFELTRRLDHDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp ECTTHHHHHTTEE----EEECCSCCCTTSCCCCHHHHHHHHHHH
T ss_pred chhhhHHHhhhEE----EEECCCcCCcccCCCCHHHHHHHHHHH
Confidence 234567999985 79998 89999999999843
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.34 E-value=2e-06 Score=104.74 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=104.2
Q ss_pred HHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC---CCc
Q psy200 205 GIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG---GKS 281 (490)
Q Consensus 205 ~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~---~~s 281 (490)
+...++..++. .+++++|+||+|||||+++..++..+ .++.++.+|++...+...+...+-..+..... |.-
T Consensus 1292 R~~~ll~~ll~--~~~pvLL~GptGtGKT~li~~~L~~l---~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~ 1366 (3245)
T 3vkg_A 1292 RHVDVLHAWLS--EHRPLILCGPPGSGKTMTLTSTLRAF---PDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV 1366 (3245)
T ss_dssp HHHHHHHHHHH--TTCCCEEESSTTSSHHHHHHHHGGGC---TTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEE
T ss_pred HHHHHHHHHHH--CCCcEEEECCCCCCHHHHHHHHHHhC---CCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcc
Confidence 44445554443 36789999999999999987766554 45678899999887777666655333321110 000
Q ss_pred HHHHHHHHHHHHh--cCCCeEEEEEecCcccccc------CHHHHHHhHhCCC--C-------CCCcEEEEEecCCCC--
Q psy200 282 ERHQLGAILKYFD--TKHKSILLILDEIDALESR------KQTILYTIFEWPS--I-------PGSKLVLVGVANALD-- 342 (490)
Q Consensus 282 ~~~~~~~l~~~l~--~~~~~~vI~IDEid~l~~~------~~~~L~~l~~~~~--~-------~~~~vilI~~tn~~~-- 342 (490)
+. ..|+.+||||||++.-... ..+.|.++++... . .-..+.+|+++|...
T Consensus 1367 -----------~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~g 1435 (3245)
T 3vkg_A 1367 -----------LRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDA 1435 (3245)
T ss_dssp -----------EEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTST
T ss_pred -----------cCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCC
Confidence 00 1267899999999864432 2467777765321 0 123567888888542
Q ss_pred hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhc
Q psy200 343 LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQ 382 (490)
Q Consensus 343 ~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~ 382 (490)
-...+.+++.+||. .+.++.++.+++..|+...+..
T Consensus 1436 Gr~~l~~Rf~r~F~----vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1436 GRVQLTHRFLRHAP----ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp TCCCCCHHHHTTCC----EEECCCCCHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHhhce----EEEeCCCCHHHHHHHHHHHHHH
Confidence 22345678889996 7999999999999998766543
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.26 E-value=8.6e-07 Score=91.40 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=69.4
Q ss_pred cCCCCcchHHHhhcCCCCCC-ChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 178 LFSEDKPKVEEKAKDSCELP-GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~lv-gre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
.+|..+|.+... +.|- ++.+.+..+..++.. + .+.++|.|++|||||+++.+++..+.......++.+ +
T Consensus 12 ~~~~~~~~p~~~----~~Ln~~Q~~av~~~~~~i~~----~-~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~-a 81 (459)
T 3upu_A 12 SGLVPRGSHMTF----DDLTEGQKNAFNIVMKAIKE----K-KHHVTINGPAGTGATTLTKFIIEALISTGETGIILA-A 81 (459)
T ss_dssp ---------CCS----SCCCHHHHHHHHHHHHHHHS----S-SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE-E
T ss_pred CCCccccCCCcc----ccCCHHHHHHHHHHHHHHhc----C-CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe-c
Confidence 367778887655 5554 455555555555542 2 349999999999999999999998864333233333 2
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHH----------H-HHHhcCCCeEEEEEecCccccccCHHHHHHhHhCC
Q psy200 257 NSVRNAASVYETIVNELKLKPGGKSERHQLGAI----------L-KYFDTKHKSILLILDEIDALESRKQTILYTIFEWP 325 (490)
Q Consensus 257 ~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l----------~-~~l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~ 325 (490)
... .....+...++.. ..+...+.... . .......+..+|||||++.+.......|..++.
T Consensus 82 ~T~----~Aa~~l~~~~~~~--~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~-- 153 (459)
T 3upu_A 82 PTH----AAKKILSKLSGKE--ASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP-- 153 (459)
T ss_dssp SSH----HHHHHHHHHHSSC--EEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC--
T ss_pred CcH----HHHHHHHhhhccc--hhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc--
Confidence 221 1111111112110 01111111000 0 000011235699999999987544444443332
Q ss_pred CCCCCcEEEEEecC
Q psy200 326 SIPGSKLVLVGVAN 339 (490)
Q Consensus 326 ~~~~~~vilI~~tn 339 (490)
.+.+++++|-.+
T Consensus 154 --~~~~~~~vGD~~ 165 (459)
T 3upu_A 154 --PWCTIIGIGDNK 165 (459)
T ss_dssp --TTCEEEEEECTT
T ss_pred --CCCEEEEECCHH
Confidence 566788887665
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.24 E-value=2.6e-06 Score=77.29 Aligned_cols=136 Identities=13% Similarity=0.182 Sum_probs=66.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhh----cCC-ceEEEEeccCCCCHHHH-HHHHHHHhcCCCC-CCcHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEI----KDA-FKTIYINCNSVRNAASV-YETIVNELKLKPG-GKSERHQLGAILK 291 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~----~~~-~~~~~v~~~~~~~~~~l-~~~i~~~l~~~~~-~~s~~~~~~~l~~ 291 (490)
....+|+|+||+|||+++...+..... ..+ ..+.+.++..+...... ... ...+..... ........+.+.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~-k~~~~~~~~~~~~~~~~~~~~~- 82 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETD-AKKLPKSTDEQLSAHDMYEWIK- 82 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECC-TTTCSSCCSSCEEGGGHHHHTT-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchh-hhhccccCcccccHHHHHHHhh-
Confidence 347889999999999999876554321 223 34445555543210000 000 000000000 001122222110
Q ss_pred HHhcCCCeEEEEEecCccccccC---H--HHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCC
Q psy200 292 YFDTKHKSILLILDEIDALESRK---Q--TILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAP 366 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~~~---~--~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~p 366 (490)
.. .++..||||||+|.+.... . ..+...++.....+..+ |.+++. ...+...++.|+.. .+++.+
T Consensus 83 -~~-~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~i--il~tq~---~~~l~~~lr~ri~~---~~~l~~ 152 (199)
T 2r2a_A 83 -KP-ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDI--FVLTQG---PKLLDQNLRTLVRK---HYHIAS 152 (199)
T ss_dssp -SG-GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEE--EEEESC---GGGBCHHHHTTEEE---EEEEEE
T ss_pred -cc-ccCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEE--EEECCC---HHHHhHHHHHHhhe---EEEEcC
Confidence 11 2457799999999995322 1 12333444333333344 444543 45566678888873 566665
No 103
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.23 E-value=1.1e-06 Score=79.13 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 197 vgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+.-..-+..+..++.. -...++++|+||||||||+++.++++.+.
T Consensus 39 ~~~~~f~~~l~~~~~~---iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 39 IEFITFLGALKSFLKG---TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CCHHHHHHHHHHHHHT---CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhc---CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444456666666653 12346799999999999999999999874
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.17 E-value=6.7e-05 Score=91.05 Aligned_cols=130 Identities=13% Similarity=0.118 Sum_probs=84.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
..+.++.||+|||||++++.+++.++ ..++.+||....+..+ +...|..+...+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg----~~~v~~nc~e~ld~~~--------------------lg~~~~g~~~~G-- 698 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLG----RVVVVFNCDDSFDYQV--------------------LSRLLVGITQIG-- 698 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTT----CCCEEEETTSSCCHHH--------------------HHHHHHHHHHHT--
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhC----CcEEEEECCCCCChhH--------------------hhHHHHHHHhcC--
Confidence 46788999999999999999999986 5678889998755433 334444444432
Q ss_pred eEEEEEecCccccccCHHHHHHh-------HhCCC----------CCCCcEEEEEecCCC-ChhHhhhHHhhhccCCCCe
Q psy200 299 SILLILDEIDALESRKQTILYTI-------FEWPS----------IPGSKLVLVGVANAL-DLTDRMLPRLQANVTLQPT 360 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l-------~~~~~----------~~~~~vilI~~tn~~-~~~~~l~~~l~~R~~~~~~ 360 (490)
..+++|||+.+.......+... +.... ..+..+.++.+.|.- .-...+-+.++.||.
T Consensus 699 -aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr---- 773 (2695)
T 4akg_A 699 -AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFR---- 773 (2695)
T ss_dssp -CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEE----
T ss_pred -CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheE----
Confidence 4899999999977654444221 11000 012344555566631 011223346777884
Q ss_pred eEEeCCCCHHHHHHHHHHH
Q psy200 361 LMNFAPYSREQILEIISQK 379 (490)
Q Consensus 361 ~i~~~pls~~e~~~il~~~ 379 (490)
.+.+..++.+.+.+++...
T Consensus 774 ~v~m~~Pd~~~i~ei~l~s 792 (2695)
T 4akg_A 774 EFSMKSPQSGTIAEMILQI 792 (2695)
T ss_dssp EEECCCCCHHHHHHHHHHH
T ss_pred EEEeeCCCHHHHHHHHHHh
Confidence 7999999999988886544
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.00 E-value=3.2e-06 Score=77.95 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=61.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCC---CcHHHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGG---KSERHQLGAILKYF 293 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~---~s~~~~~~~l~~~l 293 (490)
..+..++++|++|+||||++..++..+... +..++.+..... + . ....++..++..... ....++.+.+.+..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d-~-r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKID-T-R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCC-G-G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccC-c-h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 356788899999999999999888887532 334555533221 1 1 111223333322211 12233433333222
Q ss_pred hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEe
Q psy200 294 DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGV 337 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~ 337 (490)
. .+++-+|+|||++.+.....+.+..+.+ .+..++++|.
T Consensus 86 ~-~~~~dvViIDEaQ~l~~~~ve~l~~L~~----~gi~Vil~Gl 124 (223)
T 2b8t_A 86 F-NDETKVIGIDEVQFFDDRICEVANILAE----NGFVVIISGL 124 (223)
T ss_dssp S-CTTCCEEEECSGGGSCTHHHHHHHHHHH----TTCEEEEECC
T ss_pred h-CCCCCEEEEecCccCcHHHHHHHHHHHh----CCCeEEEEec
Confidence 2 2446799999999986543344444443 2456666655
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.94 E-value=7.8e-05 Score=69.28 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=56.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcC-----CceEEEEeccCCCCHHHHHHHHHHHhcCCC----------CCCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKD-----AFKTIYINCNSVRNAASVYETIVNELKLKP----------GGKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~-----~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~----------~~~s~ 282 (490)
.+..++|+|++|+||||++..++....... ...++|++.........+. .++..++... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 567899999999999999999998643211 3578888876643333332 2333333211 11223
Q ss_pred HHHHH---HHHHHHhcCCCeEEEEEecCcccccc
Q psy200 283 RHQLG---AILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 283 ~~~~~---~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
.+... .+.+.+.. .++.+|||||+..+...
T Consensus 102 ~~~~~~~~~~~~~~~~-~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVE-SRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHH-SCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHhc-CCceEEEEeCchHHHHH
Confidence 33222 23333433 45889999999988643
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.92 E-value=3.4e-05 Score=70.61 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=52.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc-----------C--CCCCCcHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK-----------L--KPGGKSERH 284 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~-----------~--~~~~~s~~~ 284 (490)
.+..++|+|++|+||||++..++. . .+..++|++.....+...+.. +...++ . .........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 567899999999999999999988 2 345778887765334443332 222221 1 111111122
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 285 QLGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 285 ~~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
....+.. +... ++.+|||||+..+..
T Consensus 94 ~~~~~~~-l~~~-~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 94 VIGSLKK-TVDS-NFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHHHH-HCCT-TEEEEEEECCCCCTT
T ss_pred HHHHHHH-Hhhc-CCCEEEEcCcHHHhh
Confidence 2332222 2222 588999999998853
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.87 E-value=0.00015 Score=64.43 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+.|+||+|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998874
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.81 E-value=9.8e-05 Score=67.99 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=54.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC--------------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP-------------------- 277 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~-------------------- 277 (490)
.+..++|+|++|+||||+++.++..+... ...+++++... ....+...+. .++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 46788999999999999999999766422 23566665433 3344433322 332110
Q ss_pred ----CCCcHHHHHHHHHHHHhcCCCeE--EEEEecCcccc
Q psy200 278 ----GGKSERHQLGAILKYFDTKHKSI--LLILDEIDALE 311 (490)
Q Consensus 278 ----~~~s~~~~~~~l~~~l~~~~~~~--vI~IDEid~l~ 311 (490)
...+..++...+...+.. .++- +|||||+..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQK-LGYGKARLVIDSVSALF 136 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHH-HCSSCEEEEEETGGGGS
T ss_pred eeeecCCCHHHHHHHHHHHHHh-hCCCceEEEEECchHhh
Confidence 011345555555554433 2355 99999999875
No 110
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.80 E-value=4.3e-05 Score=73.80 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=45.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKH 297 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~ 297 (490)
.+..++|+||||+|||+|+.+++...+ ....++.+......+ . .. ...+...+.+.+.+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G--~~VlyIs~~~eE~v~-------------~-~~-~~le~~l~~i~~~l~~~~ 184 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALG--GKDKYATVRFGEPLS-------------G-YN-TDFNVFVDDIARAMLQHR 184 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHH--TTSCCEEEEBSCSST-------------T-CB-CCHHHHHHHHHHHHHHCS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCC--CCEEEEEecchhhhh-------------h-hh-cCHHHHHHHHHHHHhhCC
Confidence 345679999999999999999998722 222233331121100 0 00 234555555555555433
Q ss_pred CeEEEEEecCccccc
Q psy200 298 KSILLILDEIDALES 312 (490)
Q Consensus 298 ~~~vI~IDEid~l~~ 312 (490)
+||||+++.+..
T Consensus 185 ---LLVIDsI~aL~~ 196 (331)
T 2vhj_A 185 ---VIVIDSLKNVIG 196 (331)
T ss_dssp ---EEEEECCTTTC-
T ss_pred ---EEEEeccccccc
Confidence 999999999854
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.78 E-value=7.3e-06 Score=73.38 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=54.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
+..++|+|++|+||||++..++..+.. .+..++.+..... + ......+...++............+.+ +.+. +.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~~~d-~-r~~~~~i~s~~g~~~~~~~~~~~~~~~-~~~~--~~ 76 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL-GKKKVAVFKPKID-S-RYHSTMIVSHSGNGVEAHVIERPEEMR-KYIE--ED 76 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEEEEEC-------CCCEECC----CEECEEESSGGGGG-GGCC--TT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeeccc-c-ccCcccEEecCCCceeeEEECCHHHHH-HHhc--CC
Confidence 457889999999999999767666532 2344444432211 0 000000000001000000000111111 1111 24
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
.-+|||||+|.+.....+.|..+.+. +..+++.|.+.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~----~~~Vi~~Gl~~ 113 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDR----GIDVFCAGLDL 113 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHT----TCEEEEEEESB
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHC----CCCEEEEeecc
Confidence 67999999999865555566555552 45666666653
No 112
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.70 E-value=0.00013 Score=71.40 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcC-----CceEEEEeccCCCCHHHHHHHHHHHhcCCC----------CCCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKD-----AFKTIYINCNSVRNAASVYETIVNELKLKP----------GGKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~-----~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~----------~~~s~ 282 (490)
.+..++|+|++|+|||+++..++....... +..++|++.....+...+. .++..++... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 567899999999999999999998754221 4578898876643444443 2334443211 01122
Q ss_pred H---HHHHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 283 R---HQLGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 283 ~---~~~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
. .+...+...+....++.+||||.+..+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 2 23344444444435688999999999853
No 113
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.68 E-value=0.00021 Score=70.43 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP------GGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~------~~~s~~~~~~~l~~ 291 (490)
.+..++|+||+|+|||||+..++..+.. .+..++|++........ .+..++... ...+..++...+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4668999999999999999999988753 23467888776554432 333343321 12345566665555
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
.+.. ..+.+||||.+..+..
T Consensus 134 l~~~-~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRS-GVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHT-SCCSEEEEECTTTCCC
T ss_pred Hhhh-cCCCeEEehHhhhhcC
Confidence 4443 4567999999998874
No 114
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.68 E-value=2.3e-05 Score=70.05 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=58.5
Q ss_pred CCCCeEEEECCCCCcHH-HHHHHHHHHhhhcCCceEEEEeccCC-CCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKS-ASLNLLVSRAEIKDAFKTIYINCNSV-RNAASVYETIVNELKLKPGGKSERHQLGAILKYFD 294 (490)
Q Consensus 217 ~~~~~ill~GppGtGKT-tla~~l~~~l~~~~~~~~~~v~~~~~-~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~ 294 (490)
..+...+|||+.|+||| .|++++.+... .+..++++...-. +....+...+-........ ....++.+. ..
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~-~~~~d~~~~----~~ 90 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPA-CLLRDVAQE----AL 90 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEE-SSGGGGHHH----HH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEccccCccchhhhhhccCCcccceec-CCHHHHHHh----cc
Confidence 35678999999999999 88888877654 3456666653311 1112233333222111000 112223322 21
Q ss_pred cCCCeEEEEEecCccccccCHHH-HHHhHhCCCCCCCcEEEEEecC
Q psy200 295 TKHKSILLILDEIDALESRKQTI-LYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~~~~~~~-L~~l~~~~~~~~~~vilI~~tn 339 (490)
..-+|+|||+|.+ .. +.. +..+.+ .+.+|++.|...
T Consensus 91 ---~~DvIlIDEaQFf-k~-~ve~~~~L~~----~gk~VI~~GL~~ 127 (195)
T 1w4r_A 91 ---GVAVIGIDEGQFF-PD-IVEFCEAMAN----AGKTVIVAALDG 127 (195)
T ss_dssp ---TCSEEEESSGGGC-TT-HHHHHHHHHH----TTCEEEEEEESB
T ss_pred ---CCCEEEEEchhhh-HH-HHHHHHHHHH----CCCeEEEEeccc
Confidence 1349999999999 43 433 333332 455777766654
No 115
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.68 E-value=0.00023 Score=70.17 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=58.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-----CCceEEEEeccCCCCHHHHHHHHHHHhcCC-------------CCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-----DAFKTIYINCNSVRNAASVYETIVNELKLK-------------PGG 279 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~-------------~~~ 279 (490)
.+..++|+|++|+|||+++..++...... .+..++|++.....+...+.. ++..++.. ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 45678999999999999999999875321 245788998766444444432 23333321 111
Q ss_pred CcHHHHHHHHHHHHhcC-CCeEEEEEecCccccc
Q psy200 280 KSERHQLGAILKYFDTK-HKSILLILDEIDALES 312 (490)
Q Consensus 280 ~s~~~~~~~l~~~l~~~-~~~~vI~IDEid~l~~ 312 (490)
....++...+...+... .+..+||||.+..+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 22223333444444442 5678999999998863
No 116
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.66 E-value=0.00047 Score=68.35 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=58.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP------GGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~------~~~s~~~~~~~l~~ 291 (490)
.+..++|+|+||+|||+++..++..+.. .+..++|++....... ++ +..++... ...+.+++.+.+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s~~~--~~---a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHALDP--VY---ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCH--HH---HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCChhH--HH---HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 5678999999999999999999887643 2357888887654332 21 33333221 11345666666655
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
.... +...+||||.+..+..
T Consensus 147 l~~~-~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 147 LVRS-GAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHTT-TCCSEEEEECTTTCCC
T ss_pred HHhc-CCCCEEEEeChHHhcc
Confidence 5443 4567999999999873
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.64 E-value=0.00017 Score=71.15 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=57.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP------GGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~------~~~s~~~~~~~l~~ 291 (490)
.+..++|+|++|+|||||+..++..+.. .+..++|++........ ....++... ...+..++.+.+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 5678999999999999999999877642 34467888766543322 233343221 11235555555544
Q ss_pred HHhcCCCeEEEEEecCcccc
Q psy200 292 YFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~ 311 (490)
... ..++.+||||++..+.
T Consensus 134 l~~-~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVR-SGALDIIVIDSVAALV 152 (349)
T ss_dssp HHT-TTCCSEEEEECGGGCC
T ss_pred HHh-cCCCCEEEEcChHhhc
Confidence 443 3457799999999987
No 118
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.64 E-value=0.00022 Score=75.22 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=58.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHH----HHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGA----ILKYFD 294 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~----l~~~l~ 294 (490)
.+.++|+|+||||||+++..++..+.. .+..++.+ ++..... ..+...++.. ..+...+... +.....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~-ApT~~Aa----~~L~e~~~~~--a~Tih~ll~~~~~~~~~~~~ 275 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLC-APTGKAA----RRLGEVTGRT--ASTVHRLLGYGPQGFRHNHL 275 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEE-ESSHHHH----HHHHHHHTSC--EEEHHHHTTEETTEESCSSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEe-cCcHHHH----HHhHhhhccc--HHHHHHHHcCCcchhhhhhc
Confidence 578999999999999999999987753 23444433 3322111 1222222111 0111111100 000000
Q ss_pred cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 295 TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
.....-+|||||++.+.. ..+..++.... .+.+++++|-.+
T Consensus 276 ~~~~~dvlIIDEasml~~---~~~~~Ll~~~~-~~~~lilvGD~~ 316 (574)
T 3e1s_A 276 EPAPYDLLIVDEVSMMGD---ALMLSLLAAVP-PGARVLLVGDTD 316 (574)
T ss_dssp SCCSCSEEEECCGGGCCH---HHHHHHHTTSC-TTCEEEEEECTT
T ss_pred ccccCCEEEEcCccCCCH---HHHHHHHHhCc-CCCEEEEEeccc
Confidence 112345999999999864 34444554332 567889988775
No 119
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.62 E-value=0.00015 Score=85.46 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=57.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP------GGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~------~~~s~~~~~~~l~~ 291 (490)
.+.+++|+||||||||+||.+++.+... .+..++|+++........ +..++.+. .-...+++...+..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 5679999999999999999999887652 345788887766544333 33333210 01123344444444
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
..+. .++.+|||||++.+..
T Consensus 1500 lvr~-~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1500 LARS-GAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHH-TCCSEEEESCGGGCCC
T ss_pred HHhc-CCCCEEEEcChhHhcc
Confidence 4433 5688999999987654
No 120
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.61 E-value=0.00095 Score=67.47 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHhhhcc---------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-HHHHHHH
Q psy200 199 REVQLEGIRQFLLGHVNN---------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-AASVYET 268 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~---------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-~~~l~~~ 268 (490)
.+..++.+.+.|...+.. ..+..++|+|++|+||||++..++..+.. .+..+..++|..... ..+.+..
T Consensus 68 ~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~ 146 (433)
T 3kl4_A 68 KEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQ 146 (433)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHH
Confidence 344445555555543332 13568889999999999999999998863 355677777665532 2223334
Q ss_pred HHHHhcCCC----CCCcHHHHH-HHHHHHHhcCCCeEEEEEecCcccc--ccC--HHHHHHhHhCCCCCCCcEEEEEec-
Q psy200 269 IVNELKLKP----GGKSERHQL-GAILKYFDTKHKSILLILDEIDALE--SRK--QTILYTIFEWPSIPGSKLVLVGVA- 338 (490)
Q Consensus 269 i~~~l~~~~----~~~s~~~~~-~~l~~~l~~~~~~~vI~IDEid~l~--~~~--~~~L~~l~~~~~~~~~~vilI~~t- 338 (490)
+...++.+. .+.....+. ..+..+.. ...-+||||....+. ... ...+..+.... ....++++..+
T Consensus 147 ~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~--~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~--~pd~vlLVlDa~ 222 (433)
T 3kl4_A 147 LGNQIGVQVYGEPNNQNPIEIAKKGVDIFVK--NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL--KPDDVILVIDAS 222 (433)
T ss_dssp HHHTTTCCEECCTTCSCHHHHHHHHHHHTTT--TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH--CCSEEEEEEEGG
T ss_pred HHHhcCCceeeccccCCHHHHHHHHHHHHHh--cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh--CCcceEEEEeCc
Confidence 444444321 112222222 22222221 245699999998765 222 12222222221 12244444333
Q ss_pred CCCChhHhhhHHhhhccCCCCeeEEeCCCCHH----HHHHHHHHHHhcc------CCC----CCCCHH-HHHHHHHHHHH
Q psy200 339 NALDLTDRMLPRLQANVTLQPTLMNFAPYSRE----QILEIISQKLKQT------DKF----NMFNAS-ALQLLAGKVAA 403 (490)
Q Consensus 339 n~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~----e~~~il~~~l~~~------~~~----~~~~~~-~i~~i~~~i~~ 403 (490)
+..+.. .+...+...+.. ..+.+..++.+ ....+... ...- +.. ..+.++ .+..|.
T Consensus 223 ~gq~a~-~~a~~f~~~~~~--~gVIlTKlD~~a~~G~als~~~~-~g~Pi~fig~Ge~v~dL~~f~p~~~~~~ll----- 293 (433)
T 3kl4_A 223 IGQKAY-DLASRFHQASPI--GSVIITKMDGTAKGGGALSAVVA-TGATIKFIGTGEKIDELETFNAKRFVSRIL----- 293 (433)
T ss_dssp GGGGGH-HHHHHHHHHCSS--EEEEEECGGGCSCHHHHHHHHHH-HTCEEEEEECCSSSSCEEECCHHHHHHHHH-----
T ss_pred cchHHH-HHHHHHhcccCC--cEEEEecccccccchHHHHHHHH-HCCCEEEEECCCChHhCccCCHHHHHHHhc-----
Confidence 221211 222334433332 45777777642 23333332 1110 111 123442 223332
Q ss_pred hhCCHHHHHHHHHHHHHHHHhccc-cCCccc--ccCHHHHHHHHHHhcc
Q psy200 404 VSGDIRKAIDITNHLIDLTYDNVK-ENGEVT--GIGLKEVLGVISSVYC 449 (490)
Q Consensus 404 ~~Gd~r~ai~ll~~a~~~a~~~~~-~~~~~~--~It~~~v~~a~~~~~~ 449 (490)
..||+-.++.-++.++.....+.. +..... ..+.+|+...+..+..
T Consensus 294 g~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 294 GMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp CSSHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 357777666555444322210000 000123 7999999998888753
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.60 E-value=0.0033 Score=63.53 Aligned_cols=233 Identities=12% Similarity=0.116 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhhhcc--------CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHH
Q psy200 200 EVQLEGIRQFLLGHVNN--------ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIV 270 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~--------~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~ 270 (490)
+..++.|.+.|...+.. ..+..++|+|++|+||||++..++..+.. .+..++.+.|...... .+.+..+.
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHH
Confidence 44445555555544321 23568899999999999999999998863 3567777877766543 23333444
Q ss_pred HHhcCC----CCCCcHHHH-HHHHHHHHhcCCCeEEEEEecCccccccC--HHHHHHhHhCCCCCCCcEEEEE-ecCCCC
Q psy200 271 NELKLK----PGGKSERHQ-LGAILKYFDTKHKSILLILDEIDALESRK--QTILYTIFEWPSIPGSKLVLVG-VANALD 342 (490)
Q Consensus 271 ~~l~~~----~~~~s~~~~-~~~l~~~l~~~~~~~vI~IDEid~l~~~~--~~~L~~l~~~~~~~~~~vilI~-~tn~~~ 342 (490)
...+.+ ..+.....+ .+.+..+.. ...-+||||....+.... ...+..+..... . ..+++|. ++...+
T Consensus 152 ~~~gvpv~~~~~~~dp~~i~~~al~~a~~--~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~-p-d~vlLVvDA~~gq~ 227 (443)
T 3dm5_A 152 DRYHIEVFGNPQEKDAIKLAKEGVDYFKS--KGVDIIIVDTAGRHKEDKALIEEMKQISNVIH-P-HEVILVIDGTIGQQ 227 (443)
T ss_dssp GGGTCEEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC-C-SEEEEEEEGGGGGG
T ss_pred HhcCCcEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCcccchHHHHHHHHHHHHhhc-C-ceEEEEEeCCCchh
Confidence 444331 122233333 344444333 224599999998765331 112222222111 2 2344443 332222
Q ss_pred hhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc---------CC----CCCCCHHHHHHHHHHHHHhhCCHH
Q psy200 343 LTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT---------DK----FNMFNASALQLLAGKVAAVSGDIR 409 (490)
Q Consensus 343 ~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~---------~~----~~~~~~~~i~~i~~~i~~~~Gd~r 409 (490)
... ....+...+.+ ..+.++.++.......+....... +. -..|+++ .++..+ -.-||+-
T Consensus 228 a~~-~a~~f~~~~~i--~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~---~~~~~l-lg~gd~~ 300 (443)
T 3dm5_A 228 AYN-QALAFKEATPI--GSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPP---RFVSRL-LGLGDIQ 300 (443)
T ss_dssp HHH-HHHHHHHSCTT--EEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHH---HHHHHH-TTTTCHH
T ss_pred HHH-HHHHHHhhCCC--eEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHH---HHHHHH-cCCCcHH
Confidence 111 12334333332 357777776432222222221111 11 1123443 222211 2468888
Q ss_pred HHHHHHHHHHH-------HHHhccccCCcccccCHHHHHHHHHHhcc
Q psy200 410 KAIDITNHLID-------LTYDNVKENGEVTGIGLKEVLGVISSVYC 449 (490)
Q Consensus 410 ~ai~ll~~a~~-------~a~~~~~~~~~~~~It~~~v~~a~~~~~~ 449 (490)
.++.-.+.++. ++..-. ....|.+|+..-+..+..
T Consensus 301 ~l~e~~~~~~~~~~~~~~~~~k~~-----~~~f~l~d~~~q~~~~~k 342 (443)
T 3dm5_A 301 GLLEKFKELEKEVEIKEEDIERFL-----RGKFTLKDMYAQLEAMRK 342 (443)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHH-----TTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHh-----hCCcCHHHHHHHHHHHHh
Confidence 77765544432 221111 346999999998888654
No 122
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.58 E-value=0.00031 Score=67.60 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=30.9
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
..+..++|.|++|+|||||++.++..+....+..+++++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4567899999999999999999998876443435566654
No 123
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.58 E-value=0.00045 Score=70.82 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=59.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHH-hcC---------------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE-LKL--------------------- 275 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~-l~~--------------------- 275 (490)
.+..++|.|+||+|||+++..++..+....+..+++++... +...+...+... ++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a 279 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMA 279 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 55689999999999999999999887643445677776432 344444443211 110
Q ss_pred ------------CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 276 ------------KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 276 ------------~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
...+.+..++...+...... .++-+||||+++.+..
T Consensus 280 ~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~-~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 280 MGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE-SGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT-TCCCEEEEECGGGSCC
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEEccHHHhcc
Confidence 11123556666555554433 3477999999999874
No 124
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.00063 Score=63.11 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=54.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC----------------C----
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK----------------P---- 277 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~----------------~---- 277 (490)
.+..++|+|++|+|||+++..++..+.. .+..++|++... +...+...+. .++.. +
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~~e~--~~~~~~~~~~-~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-MGEPGIYVALEE--HPVQVRQNMA-QFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEESSS--CHHHHHHHHH-TTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccC--CHHHHHHHHH-HcCCCHHHHhhCCcEEEEecchhhcc
Confidence 4668999999999999998888776542 344677776543 3344433321 11110 0
Q ss_pred -----------CCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccc
Q psy200 278 -----------GGKSERHQLGAILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 278 -----------~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
...+..++...+.+.+.. .++.+|+||++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRD-INAKRVVVDSVTTLY 141 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHH-HTCCEEEEETSGGGT
T ss_pred cccccccccccCccCHHHHHHHHHHHHHH-hCCCEEEECCchHhh
Confidence 012334445555555543 235699999999986
No 125
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.54 E-value=0.0003 Score=70.57 Aligned_cols=93 Identities=24% Similarity=0.300 Sum_probs=54.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-----CCceEEEEeccCCCCHHHHHHHHHHHhcCCC----------CCCcH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-----DAFKTIYINCNSVRNAASVYETIVNELKLKP----------GGKSE 282 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~----------~~~s~ 282 (490)
.+..+.|+|++|+|||||+..++-..... ....++|++.........+ ..+...++... .....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 56789999999999999999876444321 1346888887654333332 23444443210 01122
Q ss_pred HHH---HHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 283 RHQ---LGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 283 ~~~---~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
... ...+...+.. .++.+|+||++..+..
T Consensus 256 ~~~~~~l~~~~~~l~~-~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSE-SRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHH-SCEEEEEEETGGGGCC
T ss_pred HHHHHHHHHHHHHHHh-cCCceEEecchhhhCc
Confidence 222 2222333333 4688999999988764
No 126
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.52 E-value=0.00069 Score=69.21 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=61.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc-C---------------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK-L--------------------- 275 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~-~--------------------- 275 (490)
.+..++|.|+||+|||+++..++.......+.+++|++.-. +...+...++.... .
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a 276 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--PAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDV 276 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--CHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHH
Confidence 56689999999999999999999887644455777776532 45555555432211 0
Q ss_pred ------------CCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 276 ------------KPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 276 ------------~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
...+.+..++...+.+..... ++-+||||.++.+...
T Consensus 277 ~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~-~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 277 ASRLSEAPIYIDDTPDLTLMEVRARARRLVSQN-QVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHS-CCCEEEEECGGGCBCC
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEcChhhcCCC
Confidence 112235566666666555443 4679999999998643
No 127
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.50 E-value=0.00094 Score=62.05 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC-
Q psy200 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL- 275 (490)
Q Consensus 197 vgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~- 275 (490)
.-+..+.+.+..++. .+.++|+||+|+|||.++..++..+. ..++++. +. ..+..++...+..
T Consensus 93 ~l~~~Q~~ai~~~~~-------~~~~ll~~~tG~GKT~~a~~~~~~~~----~~~liv~-P~----~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINELS----TPTLIVV-PT----LALAEQWKERLGIF 156 (237)
T ss_dssp CCCHHHHHHHHHHTT-------TSEEEEEESSSTTHHHHHHHHHHHSC----SCEEEEE-SS----HHHHHHHHHHHGGG
T ss_pred CcCHHHHHHHHHHHh-------CCCEEEEeCCCCCHHHHHHHHHHHcC----CCEEEEe-CC----HHHHHHHHHHHHhC
Confidence 334455555555442 23589999999999999998887752 3444442 21 2233333333221
Q ss_pred --C-C---CC----------CcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHH
Q psy200 276 --K-P---GG----------KSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTIL 318 (490)
Q Consensus 276 --~-~---~~----------~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L 318 (490)
. . .+ .+.+.+...+.. +. .+..+|||||+|.+.......+
T Consensus 157 ~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~~-~~--~~~~llIiDEaH~l~~~~~~~i 212 (237)
T 2fz4_A 157 GEEYVGEFSGRIKELKPLTVSTYDSAYVNAEK-LG--NRFMLLIFDEVHHLPAESYVQI 212 (237)
T ss_dssp CGGGEEEESSSCBCCCSEEEEEHHHHHHTHHH-HT--TTCSEEEEECSSCCCTTTHHHH
T ss_pred CCCeEEEEeCCCCCcCCEEEEeHHHHHhhHHH-hc--ccCCEEEEECCccCCChHHHHH
Confidence 1 0 00 012233322221 21 2355999999999976654443
No 128
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.50 E-value=0.00013 Score=67.97 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=27.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
.+..+.|.||+|+|||||++.++........-..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 567899999999999999999984322112234455544
No 129
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.45 E-value=0.00088 Score=65.50 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=75.9
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc----------------------
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK---------------------- 274 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~---------------------- 274 (490)
.++..++|.|+||+|||+++..++..+.. .+..+++++.- .+..++...++....
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlE--ms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~ 120 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLE--MSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAK 120 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESS--SCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC--CCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHH
Confidence 35678999999999999999999988754 44567777543 255555555433210
Q ss_pred ------------CCCCCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccccC---------HHHHHHhHhCCCCCCCcEE
Q psy200 275 ------------LKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK---------QTILYTIFEWPSIPGSKLV 333 (490)
Q Consensus 275 ------------~~~~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~---------~~~L~~l~~~~~~~~~~vi 333 (490)
....+.+..++...+.......++.-+||||-++.|.... .+....|..+....+..|+
T Consensus 121 a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi 200 (338)
T 4a1f_A 121 CFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPII 200 (338)
T ss_dssp HHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEE
Confidence 0123346677777777665554368899999999986421 1222233222233456777
Q ss_pred EEEecCC
Q psy200 334 LVGVANA 340 (490)
Q Consensus 334 lI~~tn~ 340 (490)
+++-.|+
T Consensus 201 ~lsQl~R 207 (338)
T 4a1f_A 201 ALVQLNR 207 (338)
T ss_dssp EEEECCG
T ss_pred EEEecCc
Confidence 7776653
No 130
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.44 E-value=0.00045 Score=68.28 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP------GGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~------~~~s~~~~~~~l~~ 291 (490)
.+..++|+|+||+|||+++..++..+.. .+..++|++.....+.. + +..++... ...+..++.+.+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E~s~~~~--~---a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCccHH--H---HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 5678999999999999999999887653 33478888875543322 1 23333211 11234555555554
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
.... ....+||||.+..+..
T Consensus 136 l~~~-~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 136 LARS-GAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHH-TCCSEEEEECGGGCCC
T ss_pred HHhc-cCCCEEEEcCHHHhcc
Confidence 4433 3466999999999874
No 131
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.43 E-value=0.00026 Score=65.03 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=31.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-----CCceEEEEeccCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-----DAFKTIYINCNSV 259 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-----~~~~~~~v~~~~~ 259 (490)
.+..+.|+||+|+|||||++.++..+... ..-..++++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 46688999999999999999998865321 1235778876553
No 132
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.42 E-value=0.00049 Score=69.87 Aligned_cols=97 Identities=14% Similarity=0.240 Sum_probs=58.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcC-------CCCCCcH--HH---
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKL-------KPGGKSE--RH--- 284 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~-------~~~~~s~--~~--- 284 (490)
.++.++|+|++|+|||+|++.++...........+++.+.... ...+++.++...=.. .....+. ..
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 4668999999999999999999887654333334566555543 234555555332000 0110111 11
Q ss_pred -HHHHHHHHHhc-CCCeEEEEEecCccccccC
Q psy200 285 -QLGAILKYFDT-KHKSILLILDEIDALESRK 314 (490)
Q Consensus 285 -~~~~l~~~l~~-~~~~~vI~IDEid~l~~~~ 314 (490)
..-.+.+++.. .++.++||+|++.++....
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR~a~A~ 261 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAG 261 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHHHHHHH
Confidence 01134455555 6889999999999987543
No 133
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.41 E-value=0.00035 Score=68.95 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=54.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcC-----CceEEEEeccCCCCHHHHHHHHHHHhcCC-------------CCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKD-----AFKTIYINCNSVRNAASVYETIVNELKLK-------------PGG 279 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~-----~~~~~~v~~~~~~~~~~l~~~i~~~l~~~-------------~~~ 279 (490)
.+..+.|+|++|+|||||++.++..+...+ +-.++|++.........+ ..+...++.. +..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 567888999999999999999998763211 125688887554322222 2233322211 000
Q ss_pred CcHHHHHHHHHHHHhcC----CCeEEEEEecCccccc
Q psy200 280 KSERHQLGAILKYFDTK----HKSILLILDEIDALES 312 (490)
Q Consensus 280 ~s~~~~~~~l~~~l~~~----~~~~vI~IDEid~l~~ 312 (490)
.....+...+...+... .++-+|||||+-.+..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 11122333333334321 4688999999998853
No 134
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.39 E-value=0.0002 Score=76.23 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+.++|+|+|||||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999888775
No 135
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.38 E-value=1.9e-05 Score=70.94 Aligned_cols=25 Identities=24% Similarity=0.612 Sum_probs=22.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+.|+|++|+||||+++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4688999999999999999999875
No 136
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.36 E-value=0.00092 Score=64.28 Aligned_cols=88 Identities=15% Similarity=0.187 Sum_probs=57.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhhhc-CCceEEEEeccCCCCHHHHHHHHHHHhcCCCC------CCcHHHH-HHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAEIK-DAFKTIYINCNSVRNAASVYETIVNELKLKPG------GKSERHQ-LGAILK 291 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~~~-~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~------~~s~~~~-~~~l~~ 291 (490)
+.++|+||||+|||+|+-.++..+... .+-.++|++........ .+..|+.... ..+.+++ .+.+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 368899999999999998888776533 24578999876654432 2455554211 1244555 443333
Q ss_pred HH-hcCCCeEEEEEecCccccc
Q psy200 292 YF-DTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l-~~~~~~~vI~IDEid~l~~ 312 (490)
.- -..+++.+||||-|..|..
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 20 2336789999999999973
No 137
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.36 E-value=0.0019 Score=62.65 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=59.3
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc---------------C------
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK---------------L------ 275 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~---------------~------ 275 (490)
..+..++|.|+||+|||+++..++...... +..++|++.- .+...+...+..... .
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE--~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l 142 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE--MGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKL 142 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESS--SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECC--CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHH
Confidence 356789999999999999999998776532 2577777654 255555544443210 0
Q ss_pred ---------------CCCCCcHHHHHHHHHHHHhcCCCeE--EEEEecCccccc
Q psy200 276 ---------------KPGGKSERHQLGAILKYFDTKHKSI--LLILDEIDALES 312 (490)
Q Consensus 276 ---------------~~~~~s~~~~~~~l~~~l~~~~~~~--vI~IDEid~l~~ 312 (490)
...+.+..++...+.+..... +.- +||||-++.+..
T Consensus 143 ~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~-~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 143 SMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKN-PGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTS-SSCCEEEEEECGGGSBC
T ss_pred HHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCCeEEEEeCchhcCC
Confidence 112245666666666654432 344 999999998863
No 138
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.33 E-value=0.0025 Score=59.38 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..|+|+|++|+||||+++.+++.++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999998864
No 139
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.31 E-value=0.0014 Score=60.70 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=58.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh-hhcC---CceEEEEeccCCCCHHHHHHHHHHHhcCCC----------------C
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA-EIKD---AFKTIYINCNSVRNAASVYETIVNELKLKP----------------G 278 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l-~~~~---~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~----------------~ 278 (490)
+..++|.|+.|+|||+++..++-.. .... ...++++. ........+...+...++... .
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~-p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 154 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQ-PRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRP 154 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEE-SSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCS
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEec-cchHHHHHHHHHHHHHhccccCceEEEeechhhccCCC
Confidence 5689999999999998776654432 1111 22444442 211122233444444433210 0
Q ss_pred C-----CcHHHHHHHHHHHHhcCCCeEEEEEecCccc-cccC-H-HHHHHhHhCCCCCCCcEEEEEecC
Q psy200 279 G-----KSERHQLGAILKYFDTKHKSILLILDEIDAL-ESRK-Q-TILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 279 ~-----~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l-~~~~-~-~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
+ .+...+.+.+.. .-....+|||||+|.+ ...+ . ..+..++... ...+++++.+|-
T Consensus 155 ~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~--~~~~~il~SAT~ 218 (235)
T 3llm_A 155 HASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY--PEVRIVLMSATI 218 (235)
T ss_dssp SSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC--TTSEEEEEECSS
T ss_pred CCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC--CCCeEEEEecCC
Confidence 0 133444444433 2234569999999985 2211 1 2333343322 345677776663
No 140
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.30 E-value=0.0015 Score=59.26 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|.||||+||+|.++.+++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999999999864
No 141
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.29 E-value=0.00082 Score=65.50 Aligned_cols=94 Identities=11% Similarity=0.167 Sum_probs=57.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc-----------CC----ceEEEEeccCCCCHHHHHHHHHHHhcCCC-----
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK-----------DA----FKTIYINCNSVRNAASVYETIVNELKLKP----- 277 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~-----------~~----~~~~~v~~~~~~~~~~l~~~i~~~l~~~~----- 277 (490)
.+..++|+|+||+|||+++..++...... .+ ..++|++.....+...+.. ++..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 46688999999999999999998764211 11 5788888766434554432 233333211
Q ss_pred -----CCCcHHH---HHHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 278 -----GGKSERH---QLGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 278 -----~~~s~~~---~~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
...+..+ +.+.+...+....+..+||||.+..+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 0112222 3334444444435678999999998853
No 142
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.28 E-value=0.0042 Score=59.70 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=54.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHhc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKLKPG-GKSERHQLGAILKYFDT 295 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~~~-~~s~~~~~~~l~~~l~~ 295 (490)
.+..++|+|++|+||||++..++..+....+..+..+.+.... ...+.+..+...++.... ......+...+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh---
Confidence 4678999999999999999999998864345566777665543 223334443333333221 12334444444322
Q ss_pred CCCeEEEEEecCccc
Q psy200 296 KHKSILLILDEIDAL 310 (490)
Q Consensus 296 ~~~~~vI~IDEid~l 310 (490)
..+-+||||-....
T Consensus 181 -~~~dlvIiDT~G~~ 194 (296)
T 2px0_A 181 -SEYDHVFVDTAGRN 194 (296)
T ss_dssp -GGSSEEEEECCCCC
T ss_pred -cCCCEEEEeCCCCC
Confidence 33569999966554
No 143
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.27 E-value=0.0047 Score=56.41 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=24.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++.|+|.||||+||+|.++.+++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3567899999999999999999999864
No 144
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.27 E-value=0.00043 Score=80.59 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=56.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC---CCCC----cHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK---PGGK----SERHQLGAILK 291 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~---~~~~----s~~~~~~~l~~ 291 (490)
++.++||||||||||+++.+++.+.... +-..+||.+.... .+++. ..|+.. +.+. ++..+...+..
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~~~~-g~~~~fi~~~~~~--~~~~~---~~~G~d~~~~~~~~~~~~e~~l~~~~~~ 1155 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHAL--DPIYA---RKLGVDIDNLLCSQPDTGEQALEICDAL 1155 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCC--CHHHH---HHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhhc-CCceeEEEcccch--HHHHH---HHhCCCHHHHhhccccchHHHHHHHHHH
Confidence 4559999999999999999999887543 4567888765533 23332 344431 2222 44445333332
Q ss_pred HHhcCCCeEEEEEecCcccccc
Q psy200 292 YFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~~ 313 (490)
+ +...+++||+|+++.|...
T Consensus 1156 a--r~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1156 A--RSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp H--HHTCCSEEEESCGGGCCCH
T ss_pred H--HhcCCeEEEeCchHhcCcc
Confidence 2 2256899999999977655
No 145
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.21 E-value=0.0052 Score=54.66 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l 243 (490)
+.|+|+||+|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998875
No 146
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.18 E-value=0.00033 Score=63.60 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=52.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC--C-CcHHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG--G-KSERHQLGAILKYFD 294 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~--~-~s~~~~~~~l~~~l~ 294 (490)
.+...+++|+.|+||||.+-.++..+.. .+..++.+..... + ..-...+...++.... . ....++.+. +.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~k~~~d-~-R~ge~~i~s~~g~~~~a~~~~~~~~~~~~----~~ 99 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVFKPCID-N-RYSEEDVVSHNGLKVKAVPVSASKDIFKH----IT 99 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEECC-------------------CCEEECSSGGGGGGG----CC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeccC-C-cchHHHHHhhcCCeeEEeecCCHHHHHHH----Hh
Confidence 4567779999999999988888877642 3345555542221 1 1111123333322111 0 111111111 11
Q ss_pred cCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEe
Q psy200 295 TKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGV 337 (490)
Q Consensus 295 ~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~ 337 (490)
+..-+|+|||++.+....-+.+..+.+ .+..|++.|.
T Consensus 100 --~~~dvViIDEaQF~~~~~V~~l~~l~~----~~~~Vi~~Gl 136 (214)
T 2j9r_A 100 --EEMDVIAIDEVQFFDGDIVEVVQVLAN----RGYRVIVAGL 136 (214)
T ss_dssp --SSCCEEEECCGGGSCTTHHHHHHHHHH----TTCEEEEEEC
T ss_pred --cCCCEEEEECcccCCHHHHHHHHHHhh----CCCEEEEEec
Confidence 234599999999986554444544433 2445555554
No 147
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.18 E-value=0.00013 Score=65.51 Aligned_cols=109 Identities=26% Similarity=0.347 Sum_probs=54.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCC--C-CcHHHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG--G-KSERHQLGAILKYF 293 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~--~-~s~~~~~~~l~~~l 293 (490)
..+...+++|+.|+||||.+-.+++.+.. .+..++.+..... +... ...+...++.... . ....++.+ .+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~-~g~kV~v~k~~~d-~r~~-~~~i~s~~g~~~~a~~~~~~~~i~~----~~ 78 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQVFKPEID-NRYS-KEDVVSHMGEKEQAVAIKNSREILK----YF 78 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEEC---------CEEECTTSCEEECEEESSSTHHHH----HC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeccC-ccch-HHHHHhhcCCceeeEeeCCHHHHHH----HH
Confidence 34568889999999999999888888742 2334444432111 1000 0111112221100 0 01112221 12
Q ss_pred hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEec
Q psy200 294 DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
. +..-+|+|||++.+.....+.+..+.+ .+..|++.|..
T Consensus 79 ~--~~~dvViIDEaqfl~~~~v~~l~~l~~----~~~~Vi~~Gl~ 117 (191)
T 1xx6_A 79 E--EDTEVIAIDEVQFFDDEIVEIVNKIAE----SGRRVICAGLD 117 (191)
T ss_dssp C--TTCSEEEECSGGGSCTHHHHHHHHHHH----TTCEEEEEECS
T ss_pred h--ccCCEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEEecc
Confidence 1 124599999999986543444444433 24566666553
No 148
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.17 E-value=0.0011 Score=63.20 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|+|++|+|||||+..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998665
No 149
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.15 E-value=0.0011 Score=61.67 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=32.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYET 268 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~ 268 (490)
.+..++|+|+||+|||+++..++.+.....+..+++++... +...+...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC--CHHHHHHH
Confidence 56789999999999999998877654323334566665432 44555443
No 150
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.13 E-value=0.00049 Score=67.84 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=57.7
Q ss_pred ccCCCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCceEEEEeccCCCCHHHHHHHHHHHhcC-----CCCCCcHHHH---
Q psy200 215 NNETSGSMYISGPPGTGKSASLNLLVSRAEI-KDAFKTIYINCNSVRNAASVYETIVNELKL-----KPGGKSERHQ--- 285 (490)
Q Consensus 215 ~~~~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~-----~~~~~s~~~~--- 285 (490)
.-..+..++|+|++|+|||+|++.+++.+.. .+++.++++-+..- ..+ ...+.+.+.. .........+
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER--~~E-v~~~~~~~~~~vV~atadep~~~r~~~a 246 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER--PEE-VTEMQRLVKGEVVASTFDEPASRHVQVA 246 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSC--HHH-HHHHHTTCSSEEEEECTTSCHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCC--hHH-HHHHHHHhCeEEEEeCCCCCHHHHHHHH
Confidence 3457889999999999999999999887753 35666666655432 111 2222333311 1111111111
Q ss_pred --HHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 286 --LGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 286 --~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
.-.+.+++...++.++||+|++-++..
T Consensus 247 ~~alt~AEyfrd~G~dVLil~DslTR~A~ 275 (422)
T 3ice_A 247 EMVIEKAKRLVEHKKDVIILLDSITRLAR 275 (422)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCchHHHH
Confidence 112334455568899999999988764
No 151
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.11 E-value=0.003 Score=64.35 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=58.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh---------------cC-------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL---------------KL------- 275 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l---------------~~------- 275 (490)
++..++|.|+||+|||+++..++...... +..+++++.-. +..++...+.... ..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEm--s~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~ 272 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEM--GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLS 272 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSS--CTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHH
Confidence 55689999999999999999999887543 56777776543 3333333332211 00
Q ss_pred --------------CCCCCcHHHHHHHHHHHHhcCCCeE--EEEEecCccccc
Q psy200 276 --------------KPGGKSERHQLGAILKYFDTKHKSI--LLILDEIDALES 312 (490)
Q Consensus 276 --------------~~~~~s~~~~~~~l~~~l~~~~~~~--vI~IDEid~l~~ 312 (490)
...+.+..++...+.+..... +.- +||||-++.+..
T Consensus 273 ~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~-~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 273 MAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKN-PGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp HHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHS-CSSCEEEEEECSTTSBC
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEecHHhccC
Confidence 112345666776666655442 345 999999998863
No 152
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.09 E-value=0.00026 Score=64.22 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=54.0
Q ss_pred CCCCeEEEECCCCCcHHH-HHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSA-SLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGK---SERHQLGAILKY 292 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTt-la~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~---s~~~~~~~l~~~ 292 (490)
..+...+|+|+.|+|||| |++.+.+... .+..++.+...-. + ..-...+...++...... ...++.+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~D-~-R~~~~~I~Sr~G~~~~a~~v~~~~di~~~---- 97 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAID-D-RYHKEKVVSHNGNAIEAINISKASEIMTH---- 97 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC-------------CBTTBCCEEEEESSGGGGGGS----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEeccC-C-cchhhhHHHhcCCceeeEEeCCHHHHHHH----
Confidence 356788899999999999 5566544332 2333333322211 1 111122333333221111 11222221
Q ss_pred HhcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 293 FDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
+ ..+..+|+|||+|.+....-+.+..+.+ .+.+|++.|...
T Consensus 98 i--~~~~dvV~IDEaQFf~~~~v~~l~~la~----~gi~Vi~~GLd~ 138 (219)
T 3e2i_A 98 D--LTNVDVIGIDEVQFFDDEIVSIVEKLSA----DGHRVIVAGLDM 138 (219)
T ss_dssp C--CTTCSEEEECCGGGSCTHHHHHHHHHHH----TTCEEEEEEESB
T ss_pred H--hcCCCEEEEechhcCCHHHHHHHHHHHH----CCCEEEEeeccc
Confidence 1 1345699999999998654455555543 355666666654
No 153
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.08 E-value=0.015 Score=60.38 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=47.1
Q ss_pred eEEEEEecCccccccC----HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHH
Q psy200 299 SILLILDEIDALESRK----QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~----~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~ 374 (490)
+++|||||++.+.... .+.|..+.... ....|.+|.+|.+.. .+.+...++..|. .+|.|.--+..+...
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs-~d~I~~~Iran~~---~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKA--RAAGIHLILATQRPS-VDVITGLIKANIP---TRIAFQVSSKIDSRT 417 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHC--TTTTEEEEEEESCCC-TTTSCHHHHHTCC---EEEEECCSCHHHHHH
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHH--hhCCeEEEEEecCcc-cccccHHHHhhhc---cEEEEEcCCHHHHHH
Confidence 5899999999886432 23455555544 344566666676443 1233445666666 478899889988887
Q ss_pred HHH
Q psy200 375 IIS 377 (490)
Q Consensus 375 il~ 377 (490)
+|-
T Consensus 418 ILd 420 (574)
T 2iut_A 418 ILD 420 (574)
T ss_dssp HHS
T ss_pred hcC
Confidence 774
No 154
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.07 E-value=0.0016 Score=76.96 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=56.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCC-----cHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGK-----SERHQLGAILKY 292 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~-----s~~~~~~~l~~~ 292 (490)
.+.+++|+|++|||||+++.+++.+... .+..++|+.+...... ++ ...++...... ...+....+.+.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k-~Ge~~~Fit~ee~~~~--L~---a~~~G~dl~~l~~~~pd~~e~~~~i~~~ 1153 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDP--IY---ARKLGVDIDNLLCSQPDTGEQALEICDA 1153 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCH--HH---HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEccccHHH--HH---HHHcCCChhHheeecCcchHHHHHHHHH
Confidence 5678999999999999999999987653 3667889987765433 22 23333221100 011222233333
Q ss_pred HhcCCCeEEEEEecCccccc
Q psy200 293 FDTKHKSILLILDEIDALES 312 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~~ 312 (490)
+.+..++.+||||++..+..
T Consensus 1154 l~~~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1154 LARSGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCC
T ss_pred HHHhCCCCEEEECCcccccc
Confidence 43345688999999999843
No 155
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.06 E-value=0.0032 Score=65.33 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=58.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh-cCC--------------------
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL-KLK-------------------- 276 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l-~~~-------------------- 276 (490)
.+..++|.|+||+|||+++..++..+....+..+++++.-. +..++...++... +..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 318 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW 318 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHH
Confidence 46689999999999999999999887643345677776533 4555554443221 110
Q ss_pred --------------C-CCCcHHHHHHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 277 --------------P-GGKSERHQLGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 277 --------------~-~~~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
. ...+..++...+...... .++-+||||-++.+..
T Consensus 319 ~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~-~~~~lvVID~l~~l~~ 368 (503)
T 1q57_A 319 FDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSG-LGCDVIILDHISIVVS 368 (503)
T ss_dssp HHHHHTTTCEEEECCC---CHHHHHHHHHHHHHT-TCCSEEEEECTTCCCS
T ss_pred HHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHh-cCCCEEEEccchhcCC
Confidence 0 113455666666555444 3466999999998753
No 156
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.06 E-value=0.0034 Score=60.57 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=53.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHHHHhcCC----CCCCcHHH-HHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIVNELKLK----PGGKSERH-QLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~----~~~~s~~~-~~~~l~~ 291 (490)
.+..++|+|++|+||||++..++..+... +..+..+++...... .+-+..+...++.. ..+..... ..+.+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 45678899999999999999999888632 345666665544321 11223344444331 11222222 2334444
Q ss_pred HHhcCCCeEEEEEecCccc
Q psy200 292 YFDTKHKSILLILDEIDAL 310 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l 310 (490)
++. ..+-+||||+...+
T Consensus 182 a~~--~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 182 ALA--RNKDVVIIDTAGRL 198 (306)
T ss_dssp HHH--TTCSEEEEEECCCC
T ss_pred HHh--cCCCEEEEECCCch
Confidence 443 33559999999864
No 157
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.05 E-value=0.018 Score=70.92 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=90.3
Q ss_pred CCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc
Q psy200 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK 274 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~ 274 (490)
+||--++.+++|..+-+- -..+.+++||+|.+|+||++|++.++.-. ++.++.+......+..+
T Consensus 1624 ~LVlF~daleHv~RI~RI--L~qp~GhaLLVGvgGSGkqSLtrLAa~i~----~~~vfqi~i~k~Y~~~~---------- 1687 (3245)
T 3vkg_A 1624 PLVLFNEVLDHILRIDRV--FRQPQGHALLIGVSGGGKSVLSRFVAWMN----GLSIYTIKVNNNYKSSD---------- 1687 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHH--HTSTTCCEEEEESTTSSHHHHHHHHHHHT----TCEEECCC----CCHHH----------
T ss_pred eEEeHHHHHHHHHHHHHH--HccCCCCeEEecCCCCcHHHHHHHHHHHh----CCeeEEEeeeCCCCHHH----------
Confidence 466667777776665432 34567899999999999999999887764 46777666554433333
Q ss_pred CCCCCCcHHHHHHHHHHHHh---cCCCeEEEEEecCccccccC-------------------------------------
Q psy200 275 LKPGGKSERHQLGAILKYFD---TKHKSILLILDEIDALESRK------------------------------------- 314 (490)
Q Consensus 275 ~~~~~~s~~~~~~~l~~~l~---~~~~~~vI~IDEid~l~~~~------------------------------------- 314 (490)
+.+.|...+. -.+++++++++|-+-....-
T Consensus 1688 ----------f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~a~~~g 1757 (3245)
T 3vkg_A 1688 ----------FDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNG 1757 (3245)
T ss_dssp ----------HHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 3333333221 12455566665544322110
Q ss_pred -----HHHHHHhHhCCCCCCCcEEEEEecCCCChhH--hhhHHhhhccCCCCeeEEeCCCCHHHHHHHHHHHHhcc
Q psy200 315 -----QTILYTIFEWPSIPGSKLVLVGVANALDLTD--RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT 383 (490)
Q Consensus 315 -----~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~--~l~~~l~~R~~~~~~~i~~~pls~~e~~~il~~~l~~~ 383 (490)
.+.++.+|-..-..+-+|+++.......+.. +..|.|..+|. +--|.+++.+.+..+-.+.+...
T Consensus 1758 ~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncct----IDWf~~Wp~eAL~~Va~~fl~~~ 1829 (3245)
T 3vkg_A 1758 LILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCV----LDWFGEWSPEALFQVGSEFTRNL 1829 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHHHSE----EEEEESCCHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCce----eeecCCCCHHHHHHHHHHHHhhc
Confidence 1112222111111345566655443222322 34688888885 78899999999988888777653
No 158
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.03 E-value=0.0022 Score=58.63 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHH-HHHHHHHhhhc-CCceEEEE
Q psy200 220 GSMYISGPPGTGKSAS-LNLLVSRAEIK-DAFKTIYI 254 (490)
Q Consensus 220 ~~ill~GppGtGKTtl-a~~l~~~l~~~-~~~~~~~v 254 (490)
+.+++.+|+|+|||.. +-.+++.+... ....++++
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 88 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEE
Confidence 5799999999999987 44455554322 22344544
No 159
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.98 E-value=0.0033 Score=57.38 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=23.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..|+|.|++|+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999874
No 160
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.96 E-value=0.001 Score=65.05 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 197 vgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..++.++.+...+...+..+....++|+|++|+||||+++.++..+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 455666777777777666656666799999999999999999999875
No 161
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.00072 Score=59.43 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..++|+|++|+||||+++.+++.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999999875
No 162
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.93 E-value=0.0023 Score=74.63 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=59.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC------CCCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK------PGGKSERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~------~~~~s~~~~~~~l~~ 291 (490)
++..++|+|+||+|||+|+..++..+.. .+..++|++....... ++ +..++.. ....+..++.+.+..
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~-~g~~VlyiS~Ees~~q--l~---A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDP--IY---ARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCH--HH---HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHH-cCCCeEEEeccchHHH--HH---HHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 5568999999999999999999988753 3346788876654332 22 3444421 112355666666665
Q ss_pred HHhcCCCeEEEEEecCcccc
Q psy200 292 YFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~ 311 (490)
.... .++.+||||.++.+.
T Consensus 805 lv~~-~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 805 LARS-GAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHH-TCCSEEEESCSTTCC
T ss_pred HHHc-cCCCEEEEechhhhc
Confidence 5544 457799999999987
No 163
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.89 E-value=0.00094 Score=59.70 Aligned_cols=118 Identities=9% Similarity=0.016 Sum_probs=62.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC---CCHHHHHHHHHHH---hcC--CCCCCc----HHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV---RNAASVYETIVNE---LKL--KPGGKS----ERHQ 285 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~---~~~~~l~~~i~~~---l~~--~~~~~s----~~~~ 285 (490)
..+.++|++.+|.||||+|-.++-... ..++++..+..... .....++..+.-. ++. .+.... ....
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 356888999999999999999887764 34566666643321 1233444443100 011 111111 1222
Q ss_pred HHHHHHHHhc--CCCeEEEEEecCcccccc---CHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 286 LGAILKYFDT--KHKSILLILDEIDALESR---KQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 286 ~~~l~~~l~~--~~~~~vI~IDEid~l~~~---~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
...+..+.+. .++.-+|||||+-..... ..+.++.++. ......-+|.+++
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~---~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN---ARPGHQTVIITGR 161 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH---TSCTTCEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH---hCcCCCEEEEECC
Confidence 3333333332 256779999999654222 3445555554 2333455555555
No 164
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.87 E-value=0.0031 Score=57.64 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=29.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
-.+++.|++|+||||++-.++..+.. .++.++.+.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCCC
Confidence 46899999999999999999988753 3456666655443
No 165
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.87 E-value=0.0036 Score=58.93 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=26.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
+..|+|.|+||+||||+++.+++.+.. .++.++.+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~-~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK-NNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh-CCCEEEEE
Confidence 457899999999999999999988541 23445544
No 166
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.87 E-value=0.004 Score=55.97 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=18.6
Q ss_pred CCeEEEECCCCCcHHHHH-HHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASL-NLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla-~~l~~~l 243 (490)
++.+++.+|+|+|||..+ -.+...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 357999999999999874 3444444
No 167
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.86 E-value=0.0075 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|+|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998864
No 168
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.78 E-value=0.0052 Score=60.23 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh-hhcCCceEEEE
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA-EIKDAFKTIYI 254 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l-~~~~~~~~~~v 254 (490)
.+.+++.+|+|+|||..+-..+-.+ .......++++
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil 80 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIIL 80 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEE
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEE
Confidence 3689999999999999866554443 22223445555
No 169
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.78 E-value=0.0027 Score=64.33 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=50.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHHHHhcCCC-----CCCcHHH-HHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIVNELKLKP-----GGKSERH-QLGAILK 291 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~~-----~~~s~~~-~~~~l~~ 291 (490)
+..++|+|++|+||||++..++..+... +..++.+++...... .+.+..+....+... .+..... +...+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999987532 456777776554321 111222333332211 1111111 1222222
Q ss_pred HHhcCCCeEEEEEecCcccc
Q psy200 292 YFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~ 311 (490)
+ ...-+||||....+.
T Consensus 178 ~----~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 178 F----KKADVLIIDTAGRHK 193 (432)
T ss_dssp T----SSCSEEEEECCCSCS
T ss_pred h----hCCCEEEEcCCCCcc
Confidence 2 334589999998875
No 170
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.74 E-value=0.0011 Score=58.81 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
...|+|+|++|+||||+++.+++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999999875
No 171
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.0012 Score=59.39 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=24.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|+|++|+||||+++.+++.++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999999875
No 172
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.70 E-value=0.0039 Score=56.04 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=24.1
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
+..+|||||+|.+.... ...+..++.... ...+++++.+|
T Consensus 146 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~-~~~~~l~~SAT 186 (206)
T 1vec_A 146 HVQMIVLDEADKLLSQDFVQIMEDIILTLP-KNRQILLYSAT 186 (206)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHSC-TTCEEEEEESC
T ss_pred cCCEEEEEChHHhHhhCcHHHHHHHHHhCC-ccceEEEEEee
Confidence 45699999999987543 344444443321 24566666555
No 173
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.70 E-value=0.0031 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..|+|.|++|+||||+++.+++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998874
No 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.68 E-value=0.0011 Score=59.75 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=28.6
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
...+..++|.|++|+||||+++.++..++ .++++....
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g------~~~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETG------LEFAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHC------CEEEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhC------CeEEccccc
Confidence 34677899999999999999999998763 345555444
No 175
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.68 E-value=0.0012 Score=63.14 Aligned_cols=26 Identities=19% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..++|.|++|+||||+++.+++.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999876
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.67 E-value=0.0016 Score=58.58 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=29.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
..+..++|.|++|+||||+++.++..+. ..+...++++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 5677899999999999999999999886 3334334554
No 177
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.66 E-value=0.0014 Score=59.97 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=48.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccC-CCCHHHHHHHHHHHhcCCCCC---CcHHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNS-VRNAASVYETIVNELKLKPGG---KSERHQLGAILKYF 293 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~-~~~~~~l~~~i~~~l~~~~~~---~s~~~~~~~l~~~l 293 (490)
.+...+++|+.|+||||.+-..+..... .+..++.+.-.. .+... .+...++..... ....++.+. .
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~-~g~kvli~kp~~D~Ryg~----~i~sr~G~~~~a~~i~~~~di~~~----~ 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYAKDTRYSS----SFCTHDRNTMEALPACLLRDVAQE----A 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT-TTCCEEEEEETTCCCC---------------CEEEEESSGGGGHHH----H
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEeecCCccchH----HHHhhcCCeeEEEecCCHHHHHHH----h
Confidence 4567889999999999766666555532 334444443222 12112 233333221100 111222222 2
Q ss_pred hcCCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEe
Q psy200 294 DTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGV 337 (490)
Q Consensus 294 ~~~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~ 337 (490)
+..-+|+|||++.+.. ...+..++. ..+..|++-|.
T Consensus 89 ---~~~dvViIDEaQF~~~--v~el~~~l~---~~gi~VI~~GL 124 (234)
T 2orv_A 89 ---LGVAVIGIDEGQFFPD--IVEFCEAMA---NAGKTVIVAAL 124 (234)
T ss_dssp ---TTCSEEEESSGGGCTT--HHHHHHHHH---HTTCEEEEECC
T ss_pred ---ccCCEEEEEchhhhhh--HHHHHHHHH---hCCCEEEEEec
Confidence 2345999999999963 333334333 23444554443
No 178
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.65 E-value=0.0018 Score=60.71 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|.|+||+||||+++.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456789999999999999999998874
No 179
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.64 E-value=0.0013 Score=57.27 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..|+|.|++|+||||+++.+++.++
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999998875
No 180
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.64 E-value=0.002 Score=59.62 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=23.7
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
...+|||||+|.+.... ...+..++.... ...+++++.+|
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~-~~~~~i~~SAT 213 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLN-TSIQVVLLSAT 213 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSC-TTCEEEEECSS
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCC-CCCeEEEEEEe
Confidence 35699999999886442 344445544321 34455665555
No 181
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.64 E-value=0.00057 Score=67.55 Aligned_cols=86 Identities=14% Similarity=0.198 Sum_probs=46.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~ 296 (490)
...+.++|+||.|+||||+++.++..+.....-.++.+.-......... ..+ +.....+.....+.+.+..++.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-~~~---v~q~~~~~~~~~~~~~La~aL~-- 194 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-KCL---VNQREVHRDTLGFSEALRSALR-- 194 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-SSE---EEEEEBTTTBSCHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-ccc---eeeeeeccccCCHHHHHHHHhh--
Confidence 3456899999999999999999998876432233333321110000000 000 0000001111234446666665
Q ss_pred CCeEEEEEecCc
Q psy200 297 HKSILLILDEID 308 (490)
Q Consensus 297 ~~~~vI~IDEid 308 (490)
..|-+|++||+-
T Consensus 195 ~~PdvillDEp~ 206 (356)
T 3jvv_A 195 EDPDIILVGEMR 206 (356)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEecCCCC
Confidence 457799999996
No 182
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.63 E-value=0.037 Score=53.78 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=52.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcCC----CCCCc-HHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKLK----PGGKS-ERHQLGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~----~~~~s-~~~~~~~l~~ 291 (490)
.+..+.|.||.|+||||+++.++..+... ...+....+.... ...+.+..+...++.. ..+.. ...+.+.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 46688899999999999999999887533 2344444443332 3344455555555531 11122 2233444443
Q ss_pred HHhcCCCeEEEEEecCcccc
Q psy200 292 YFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~ 311 (490)
..... .-+++||......
T Consensus 207 ~~~~~--~d~vliDtaG~~~ 224 (328)
T 3e70_C 207 AKARG--IDVVLIDTAGRSE 224 (328)
T ss_dssp HHHHT--CSEEEEEECCSCC
T ss_pred HHhcc--chhhHHhhccchh
Confidence 33322 2367789877654
No 183
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.62 E-value=0.028 Score=57.93 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=43.6
Q ss_pred EEEEEecCccccccC----HHHHHHhHhCCCCCCCcEEEEEecCCCChhHhhhHHhhhccCCCCeeEEeCCCCHHHHHHH
Q psy200 300 ILLILDEIDALESRK----QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEI 375 (490)
Q Consensus 300 ~vI~IDEid~l~~~~----~~~L~~l~~~~~~~~~~vilI~~tn~~~~~~~l~~~l~~R~~~~~~~i~~~pls~~e~~~i 375 (490)
++|+|||++.+.... .+.+..+.... ....+.+|.+|.+... +-+...++..|. .+|.|.--+..+...+
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~g--Ra~GI~LIlaTQrp~~-dvl~~~i~~n~~---~RI~lrv~s~~dsr~i 372 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKA--RAAGIHLVLATQRPSV-DVITGLIKANIP---TRIAFTVSSKIDSRTI 372 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHC--GGGTEEEEEEESCCCT-TTSCHHHHHHCC---EEEEECCSSHHHHHHH
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHh--hhCCcEEEEEecCCcc-ccccHHHHhhcC---CeEEEEcCCHHHHHHh
Confidence 699999998876422 23333443333 2235666666765431 223344555555 4788888899888877
Q ss_pred HHH
Q psy200 376 ISQ 378 (490)
Q Consensus 376 l~~ 378 (490)
+..
T Consensus 373 lg~ 375 (512)
T 2ius_A 373 LDQ 375 (512)
T ss_dssp HSS
T ss_pred cCC
Confidence 653
No 184
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.60 E-value=0.0014 Score=57.39 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLL 239 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l 239 (490)
.+..+.|.|++|+||||+++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4668899999999999999964
No 185
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.59 E-value=0.0015 Score=59.00 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 197 vgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.-+.-+.+.+..++. ++.++|.+|+|+|||.++-.++..+
T Consensus 33 ~l~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 33 QLRPYQMEVAQPALE-------GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCCHHHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 334445444444442 3579999999999999988777654
No 186
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.59 E-value=0.0017 Score=57.23 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
....|+|+|++|+||||+++.+++.++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999998874
No 187
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.58 E-value=0.0058 Score=61.74 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|+|+||+||||+++.+++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999987753
No 188
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.57 E-value=0.0026 Score=57.25 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 198 gre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+.+.++.|.+.+... ....+..+.|.|++|+||||+++.++..+.
T Consensus 2 ~~~~~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3556777777777542 223456788999999999999999998774
No 189
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.54 E-value=0.0015 Score=57.13 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..++|+|++|+||||+++.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998864
No 190
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.53 E-value=0.0016 Score=64.14 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=55.9
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCceEEEEeccCCCC-HHHHHHHHHHHhcCCCCCCcH-HH-----HHH
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEI-KDAFKTIYINCNSVRN-AASVYETIVNELKLKPGGKSE-RH-----QLG 287 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~~~~~v~~~~~~~-~~~l~~~i~~~l~~~~~~~s~-~~-----~~~ 287 (490)
-+.++.++|.|++|+|||+|+..+++.... .+++.++++-+..-.. ..++++.+...+-........ .. ..-
T Consensus 172 igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~al 251 (427)
T 3l0o_A 172 IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTL 251 (427)
T ss_dssp CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHH
Confidence 357889999999999999999999987653 3566666665543211 011111111000001111111 11 111
Q ss_pred HHHHHHhcCCCeEEEEEecCccccc
Q psy200 288 AILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 288 ~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
.+.+++...++.++|++|++-++..
T Consensus 252 tiAEyfrd~G~dVLil~DslTR~A~ 276 (427)
T 3l0o_A 252 EMAKRLVEFNYDVVILLDSLTRLAR 276 (427)
T ss_dssp HHHHHHHHTTCEEEEEEECHHHHHH
T ss_pred HHHHHHHHcCCCEEEecccchHHHH
Confidence 2344555568899999999988753
No 191
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.53 E-value=0.016 Score=55.73 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=20.4
Q ss_pred CCCCeEEEECCCCCcHHHHHH-HHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLN-LLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~-~l~~~l~ 244 (490)
+.++.+++.+|.|+|||...- .+++.+.
T Consensus 129 ~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 129 EPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp SSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 345789999999999997643 4445543
No 192
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.53 E-value=0.014 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++|.|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999874
No 193
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.50 E-value=0.0022 Score=56.85 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.+..++|+|++|+||||+++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999987
No 194
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.49 E-value=0.0017 Score=57.58 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..++|.|++|+||||+++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999875
No 195
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.47 E-value=0.0021 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++|.|++|+||||+++.+++.++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999999875
No 196
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.47 E-value=0.0021 Score=55.89 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
...+++|.|++|+||||+++.+++.++
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999999876
No 197
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.47 E-value=0.0023 Score=58.03 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=24.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|++|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567888999999999999999998875
No 198
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.46 E-value=0.0046 Score=62.38 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=56.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK----PGGKSERHQLGAILKYF 293 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~----~~~~s~~~~~~~l~~~l 293 (490)
..+..+|.|+||+|||+++..+++. . ..+.+. -......+|.+.+... ........+..++.+..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~----~--~~lVlT-----pT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~ 228 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF----E--EDLILV-----PGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYG 228 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT----T--TCEEEE-----SCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc----C--CeEEEe-----CCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCC
Confidence 5568889999999999999877642 1 112221 1133344454555321 11112223333332211
Q ss_pred hcC-CCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecCC
Q psy200 294 DTK-HKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANA 340 (490)
Q Consensus 294 ~~~-~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn~ 340 (490)
... ...-+|||||+..+... .+..++... ...+++++|-.+-
T Consensus 229 ~~~~~~~d~liiDE~sm~~~~---~l~~l~~~~--~~~~vilvGD~~Q 271 (446)
T 3vkw_A 229 KGARCQFKRLFIDEGLMLHTG---CVNFLVEMS--LCDIAYVYGDTQQ 271 (446)
T ss_dssp SSCCCCCSEEEEETGGGSCHH---HHHHHHHHT--TCSEEEEEECTTS
T ss_pred CCCCCcCCEEEEeCcccCCHH---HHHHHHHhC--CCCEEEEecCccc
Confidence 100 01359999999977543 333333222 2378899887763
No 199
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.46 E-value=0.0021 Score=57.13 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|++|+||||+++.+++.++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356789999999999999999998874
No 200
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.45 E-value=0.035 Score=57.15 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=52.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHHHHhcCC----CCCCcHHHH-HHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIVNELKLK----PGGKSERHQ-LGAILKY 292 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~----~~~~s~~~~-~~~l~~~ 292 (490)
+..|+|+|.+|+||||++..++..+... +..+..+++-..... .+.+.......+.+ ..+....++ .+.+..+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999888633 456677776554432 23333333333332 122223232 2333333
Q ss_pred HhcCCCeEEEEEecCcccc
Q psy200 293 FDTKHKSILLILDEIDALE 311 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~ 311 (490)
.. ...-++|||-...+.
T Consensus 180 ~~--~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 180 KN--ENFEIIIVDTSGRHK 196 (504)
T ss_dssp HH--TTCCEEEEEECCCCT
T ss_pred HH--CCCcEEEEeCCCCcc
Confidence 21 224599999988764
No 201
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.43 E-value=0.0025 Score=55.41 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++|.|++|+||||+++.+ +.++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 36889999999999999999 6654
No 202
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.41 E-value=0.0023 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..|+|+|++|+||||+++.+++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999875
No 203
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.41 E-value=0.011 Score=54.17 Aligned_cols=36 Identities=11% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCeEEEECCCCCcHHHHH-HHHHHHhhh-cCCceEEEE
Q psy200 219 SGSMYISGPPGTGKSASL-NLLVSRAEI-KDAFKTIYI 254 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla-~~l~~~l~~-~~~~~~~~v 254 (490)
++.+++.+|.|+|||... -.+...+.. .....++++
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil 98 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILIL 98 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 367999999999999873 334444422 222345555
No 204
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.40 E-value=0.0098 Score=59.44 Aligned_cols=40 Identities=28% Similarity=0.452 Sum_probs=24.1
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
...+|||||+|.+.... ...+..++... ....+++++.+|
T Consensus 183 ~~~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~i~~SAT 223 (414)
T 3eiq_A 183 YIKMFVLDEADEMLSRGFKDQIYDIFQKL-NSNTQVVLLSAT 223 (414)
T ss_dssp TCCEEEECSHHHHHHTTTHHHHHHHHTTS-CTTCEEEEECSC
T ss_pred cCcEEEEECHHHhhccCcHHHHHHHHHhC-CCCCeEEEEEEe
Confidence 34599999999986543 34444454432 244566666555
No 205
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.39 E-value=0.0029 Score=56.89 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|+|++|+||||+++.+++.++
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455789999999999999999999875
No 206
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.36 E-value=0.03 Score=51.68 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=24.9
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
...+|||||+|.+.... ...+..++... ....+++++.+|
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~-~~~~q~~~~SAT 216 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQI-RPDRQTLMWSAT 216 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTS-CSSCEEEEEESC
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhC-CccceEEEEEee
Confidence 45599999999987643 34444555433 234566666665
No 207
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.34 E-value=0.0098 Score=54.06 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=24.4
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
...+|||||+|.+.... ...+..++.... ...+++++.+|
T Consensus 150 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~-~~~~~l~~SAT 190 (219)
T 1q0u_A 150 TAHILVVDEADLMLDMGFITDVDQIAARMP-KDLQMLVFSAT 190 (219)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSC-TTCEEEEEESC
T ss_pred cceEEEEcCchHHhhhChHHHHHHHHHhCC-cccEEEEEecC
Confidence 34589999999987543 344445544322 34556666666
No 208
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.34 E-value=0.003 Score=57.65 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|++|+||||+++.+++.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999999875
No 209
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.34 E-value=0.0029 Score=56.37 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=24.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|++|+||||+++.+++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998874
No 210
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.33 E-value=0.0025 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..++|.|++|+||||+++.+++.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998874
No 211
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.32 E-value=0.0056 Score=54.47 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=32.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
.|+|.|++|+||||+++.+++.+.. .++.++.............+..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~v~~~~~~~~~~~g~~~~~~~~ 51 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-CCC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEeeCCCCCcHHHHHHHHHH
Confidence 4789999999999999999998732 2356655544332223334444443
No 212
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.32 E-value=0.0031 Score=54.90 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..|+|+|++|+||||+++.+++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999875
No 213
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.32 E-value=0.023 Score=52.80 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.-.|+|.|.+|+|||||++.+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346889999999999999999754
No 214
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.31 E-value=0.015 Score=57.42 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=18.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLV 240 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~ 240 (490)
+.++.+++.+|+|+|||..+-..+
T Consensus 42 ~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 42 NPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SSCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Confidence 345789999999999998765433
No 215
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.31 E-value=0.0083 Score=64.13 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=24.5
Q ss_pred eEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEec
Q psy200 299 SILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
.-.|+|||+|.+.......+..+.. .+.+++++|-.
T Consensus 214 ~~~ilVDE~QD~~~~q~~ll~~l~~----~~~~l~~vGD~ 249 (647)
T 3lfu_A 214 FTNILVDEFQDTNNIQYAWIRLLAG----DTGKVMIVGDD 249 (647)
T ss_dssp CCEEEESSGGGCCHHHHHHHHHHHT----TTCEEEEEECG
T ss_pred CCEEEEECcccCCHHHHHHHHHHhc----CCCEEEEEcCc
Confidence 4589999999997665566655543 34467777654
No 216
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.30 E-value=0.0027 Score=57.13 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|.|++|+||||+++.++..++
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998874
No 217
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.30 E-value=0.03 Score=51.71 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=24.5
Q ss_pred CeEEEEEecCcccccc----CHHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESR----KQTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~----~~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
...+|||||+|.+... -...+..++........+++++.+|
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT 219 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSAT 219 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESS
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 3558999999999752 2334444443333345566666655
No 218
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.29 E-value=0.0022 Score=56.29 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~ 241 (490)
..++|.|+||+||||+++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4688999999999999999987
No 219
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0026 Score=56.22 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..++|+||+|+|||||++.++..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35688999999999999999998875
No 220
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.27 E-value=0.007 Score=53.64 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=27.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
.++|.|++|+||||+++.+++.+.. .++.++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ-KGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 5789999999999999999998731 2355665543
No 221
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.26 E-value=0.0025 Score=57.52 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|+|++|+||||+++.++..+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 567899999999999999999998763
No 222
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.25 E-value=0.0023 Score=56.72 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
..|+|.|++|+||||+++.+++.+.. .++.+.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~-~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN-QGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT-TTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-cCceEEEE
Confidence 36889999999999999999998852 23445555
No 223
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.24 E-value=0.006 Score=54.66 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
.+..|+|.|++|+||||+++.+++.+ .++.++.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI---PANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS---CGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---CCCceEEEec
Confidence 35688999999999999999999886 2245555543
No 224
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.24 E-value=0.02 Score=56.93 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.7
Q ss_pred CeEEEECCCCCcHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLV 240 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~ 240 (490)
+.+++.+|+|+|||..+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 469999999999998654443
No 225
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.23 E-value=0.0029 Score=59.37 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.++|.|++|+||||+++.++..++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 688999999999999999999875
No 226
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.23 E-value=0.0046 Score=54.34 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
.+..++|+|++|+||||+++.++..+.. .++.++.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 4567889999999999999999988742 345666665
No 227
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.23 E-value=0.002 Score=56.71 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=19.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..|+|.|++|+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56789999999999999999998875
No 228
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.22 E-value=0.0023 Score=56.89 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=26.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
..+..++|.|++|+||||+++.++..+ +...++++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~ 41 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFH 41 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEc
Confidence 346689999999999999999998753 23445554
No 229
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.20 E-value=0.0029 Score=57.06 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..|+|.|++|+||||+++.+++.++
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45788999999999999999999886
No 230
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.20 E-value=0.0036 Score=55.89 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..|+|.|++|+||||+++.+++.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 231
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.20 E-value=0.0031 Score=55.14 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|+|++|+||||+++.++..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 356789999999999999999988763
No 232
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.19 E-value=0.04 Score=51.18 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=23.9
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
...+|||||+|.+.... ...+..++.... ...+++++.+|
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~-~~~~~l~~SAT 226 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIP-RDRKTFLFSAT 226 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSC-SSSEEEEEESS
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCC-CCCeEEEEecc
Confidence 34589999999886542 344445554332 24556666555
No 233
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.18 E-value=0.0052 Score=65.83 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHH
Q psy200 200 EVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i 269 (490)
+.+.+.+...|.. ....+|.||||||||+++-.+..++... +.. +.+.+.+......++..|
T Consensus 192 ~~Q~~AV~~al~~------~~~~lI~GPPGTGKT~ti~~~I~~l~~~-~~~-ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 192 TSQKEAVLFALSQ------KELAIIHGPPGTGKTTTVVEIILQAVKQ-GLK-VLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp HHHHHHHHHHHHC------SSEEEEECCTTSCHHHHHHHHHHHHHHT-TCC-EEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC------CCceEEECCCCCCHHHHHHHHHHHHHhC-CCe-EEEEcCchHHHHHHHHHH
Confidence 4566666666642 3478999999999998877777666432 223 333333322334444444
No 234
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.17 E-value=0.062 Score=51.43 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHHHHhcCCC----CCCcHHHHH-HHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIVNELKLKP----GGKSERHQL-GAILKY 292 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~~----~~~s~~~~~-~~l~~~ 292 (490)
+..++|+|++|+||||++..++..+.. .+..+..+++...... ...+..+....+... .+....++. +.+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999988753 3456777776655432 223444444444321 123344443 333333
Q ss_pred HhcCCCeEEEEEecCcccc
Q psy200 293 FDTKHKSILLILDEIDALE 311 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~ 311 (490)
.. ...-+||||=...+.
T Consensus 177 ~~--~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 177 LS--EKMEIIIVDTAGRHG 193 (297)
T ss_dssp HH--TTCSEEEEECCCSCC
T ss_pred Hh--CCCCEEEEeCCCCcc
Confidence 21 223499999987765
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.16 E-value=0.034 Score=56.22 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=56.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCH-HHHHHHHHHHhcCC----CCCCcHHHH-HHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNA-ASVYETIVNELKLK----PGGKSERHQ-LGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~-~~l~~~i~~~l~~~----~~~~s~~~~-~~~l~~ 291 (490)
.+..++|+|++|+||||++..++..+....+.++..++|...... .+.+..+....+.. ..+.+...+ .+.+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 356888999999999999999999987543678888888766533 22233333333321 112233444 333433
Q ss_pred HHhcCCCeEEEEEecCcccc
Q psy200 292 YFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~ 311 (490)
+... ..-+||||=...+.
T Consensus 179 ~~~~--~~D~VIIDTpG~l~ 196 (433)
T 2xxa_A 179 AKLK--FYDVLLVDTAGRLH 196 (433)
T ss_dssp HHHT--TCSEEEEECCCCCT
T ss_pred HHhC--CCCEEEEECCCccc
Confidence 3221 23489999876654
No 236
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.16 E-value=0.013 Score=53.54 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=24.5
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
...+|||||+|.+.... ...+..++... ....+++++.+|
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT 207 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDV-RPDRQTVMTSAT 207 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHS-CSSCEEEEEESC
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhC-CcCCeEEEEEee
Confidence 35689999999987553 34444444332 234566666666
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.15 E-value=0.003 Score=57.20 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..++|+||+|+||||+++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567899999999999999999998763
No 238
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.12 E-value=0.0041 Score=55.08 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=23.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..|+|.|++|+||||+++.+++.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998874
No 239
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.12 E-value=0.0037 Score=57.37 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|++|+||||+++.+++.++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356799999999999999999998864
No 240
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.11 E-value=0.033 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
+.+++.+|.|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 56999999999999876555443
No 241
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.11 E-value=0.0042 Score=55.74 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|++|+||||+++.+++.++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999998864
No 242
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.10 E-value=0.0055 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|++|+||||+++.+++.++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999999875
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.10 E-value=0.0037 Score=55.34 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=29.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
..+..++|.|++|+||||+++.++..+.. .++.+.+++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~-~~~~~~~~~ 48 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK-EGYRVEVLD 48 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEee
Confidence 35678899999999999999999998853 233445553
No 244
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.09 E-value=0.0033 Score=57.45 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|++|+||||+++.+++.++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999999875
No 245
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.09 E-value=0.0041 Score=56.37 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=30.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
..+..++|.|++|+||||+++.++..+....++.+++++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 456788999999999999999999987522344466664
No 246
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.08 E-value=0.0035 Score=56.65 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|++|+||||+++.+++.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999876
No 247
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.06 E-value=0.031 Score=56.59 Aligned_cols=96 Identities=14% Similarity=0.304 Sum_probs=59.3
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCceEEEEeccCCC-CHHHHHHHHHHHhcCC-------------CCCC
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEI-KDAFKTIYINCNSVR-NAASVYETIVNELKLK-------------PGGK 280 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~-------------~~~~ 280 (490)
-..++.++|.|++|+|||+|+..+++.... ..++ ++++-|..-. ...+|++++...=... ....
T Consensus 150 igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v-~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~ 228 (482)
T 2ck3_D 150 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY-SVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNE 228 (482)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSE-EEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS
T ss_pred cccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCE-EEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCC
Confidence 357889999999999999999999987632 2344 4555554432 3456666665531111 0011
Q ss_pred c-HH-----HHHHHHHHHHhc-CCCeEEEEEecCccccc
Q psy200 281 S-ER-----HQLGAILKYFDT-KHKSILLILDEIDALES 312 (490)
Q Consensus 281 s-~~-----~~~~~l~~~l~~-~~~~~vI~IDEid~l~~ 312 (490)
. .. ...-.+.+++.. .++.++|++|++-++..
T Consensus 229 p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~ 267 (482)
T 2ck3_D 229 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQ 267 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 1 11 112234455665 68999999999887753
No 248
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.05 E-value=0.016 Score=59.03 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=59.7
Q ss_pred ccCCCCeEEEECCCCCcHHHH-HHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcC--------CCCCCcHHH
Q psy200 215 NNETSGSMYISGPPGTGKSAS-LNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKL--------KPGGKSERH 284 (490)
Q Consensus 215 ~~~~~~~ill~GppGtGKTtl-a~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~--------~~~~~s~~~ 284 (490)
.-+.++.++|.|++|+|||+| +..+++... .++.++++-+..-. ...++++++...=.. .........
T Consensus 158 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 158 PIGRGQRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp CCBTTCBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred ccccCCEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 345788999999999999999 668877753 56666777666542 334556665542111 111111111
Q ss_pred H-----HHHHHHHHhcCCCeEEEEEecCcccc
Q psy200 285 Q-----LGAILKYFDTKHKSILLILDEIDALE 311 (490)
Q Consensus 285 ~-----~~~l~~~l~~~~~~~vI~IDEid~l~ 311 (490)
+ .-.+.+++...++.++|++|++-++.
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A 267 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMYKGKHALVVYDDLSKQA 267 (502)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 1 12345566667899999999987765
No 249
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.03 E-value=0.0048 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|+|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999875
No 250
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.02 E-value=0.038 Score=60.30 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
+..++|.||+|+|||+++..++...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999777775443
No 251
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.02 E-value=0.0042 Score=57.82 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|.|++|+||||+++.+++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998875
No 252
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.01 E-value=0.019 Score=58.66 Aligned_cols=97 Identities=16% Similarity=0.279 Sum_probs=60.3
Q ss_pred cCCCCeEEEECCCCCcHHHH-HHHHHHHhhh------cCCceEEEEeccCCC-CHHHHHHHHHHHhcC--------CCCC
Q psy200 216 NETSGSMYISGPPGTGKSAS-LNLLVSRAEI------KDAFKTIYINCNSVR-NAASVYETIVNELKL--------KPGG 279 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtl-a~~l~~~l~~------~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~--------~~~~ 279 (490)
-+.++.++|.|++|+|||+| +..+++.... ..++.++++-+..-. ...++++.+...=.. ....
T Consensus 159 igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~ 238 (510)
T 2ck3_A 159 IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASD 238 (510)
T ss_dssp CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTS
T ss_pred cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCC
Confidence 45788999999999999999 6677777652 245666777666542 334556655542100 1111
Q ss_pred CcHHHH-----HHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 280 KSERHQ-----LGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 280 ~s~~~~-----~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
.....+ .-.+.+++...++.++|++|++-++..
T Consensus 239 p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~ 276 (510)
T 2ck3_A 239 AAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAV 276 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHH
Confidence 111111 123455566678999999999877653
No 253
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.01 E-value=0.011 Score=61.60 Aligned_cols=113 Identities=14% Similarity=0.208 Sum_probs=61.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC----------------CCCCc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK----------------PGGKS 281 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~----------------~~~~s 281 (490)
.+..++|.|++|+|||||++.++...... +..++++.... ....+...+ ..++.. ....+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee--~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE--SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS--CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC--CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 56789999999999999999999876532 33455554322 233333222 111110 00123
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCcccccc-----CHHHHHHhHhCCCCCCCcEEEE
Q psy200 282 ERHQLGAILKYFDTKHKSILLILDEIDALESR-----KQTILYTIFEWPSIPGSKLVLV 335 (490)
Q Consensus 282 ~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~-----~~~~L~~l~~~~~~~~~~vilI 335 (490)
..+....+...... .++-+||||=+..|... ....+..++......+..++++
T Consensus 356 ~g~~q~~~~a~~l~-~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 356 LEDHLQIIKSEIND-FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp HHHHHHHHHHHHHT-TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHh-hCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34444333332222 45779999977777665 4555555544332233444444
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.01 E-value=0.0044 Score=55.61 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.||+|+||||+++.++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45688899999999999999998864
No 255
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.00 E-value=0.0089 Score=55.05 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=28.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
.+..++|.|++|+||||+++.+++.+.. ++.++...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~~ 60 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMTR 60 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEEC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceeec
Confidence 4667889999999999999999999864 45555443
No 256
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.00 E-value=0.0042 Score=56.17 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=24.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|++|+||||+++.+++.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999875
No 257
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.00 E-value=0.0038 Score=56.69 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|+|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998874
No 258
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.99 E-value=0.083 Score=53.15 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHH-HHHHHHHHHhcCC----CCCCcHHHH-HHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA-SVYETIVNELKLK----PGGKSERHQ-LGAILKY 292 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~-~l~~~i~~~l~~~----~~~~s~~~~-~~~l~~~ 292 (490)
+..++|+|+.|+||||++..++..+... +..+..+++....... ..+..+....+.+ ..+....++ .+.+..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 5578899999999999999999988633 4566777764443222 2234444444432 112233444 3344433
Q ss_pred HhcCCCeEEEEEecCcccc
Q psy200 293 FDTKHKSILLILDEIDALE 311 (490)
Q Consensus 293 l~~~~~~~vI~IDEid~l~ 311 (490)
.. ...-+||||=...+.
T Consensus 177 ~~--~~~DvVIIDTaG~l~ 193 (425)
T 2ffh_A 177 RL--EARDLILVDTAGRLQ 193 (425)
T ss_dssp HH--TTCSEEEEECCCCSS
T ss_pred HH--CCCCEEEEcCCCccc
Confidence 22 223489999776654
No 259
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.99 E-value=0.073 Score=46.71 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
-.|+|.|.+|+|||+|++.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 260
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.081 Score=46.26 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~ 241 (490)
.....++|.|.+|+|||+|++.+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999974
No 261
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.94 E-value=0.0045 Score=55.42 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999999885
No 262
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.93 E-value=0.045 Score=52.36 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=53.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHH-HHHHHHHHHhcCCC----CCCcHHHH-HHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA-SVYETIVNELKLKP----GGKSERHQ-LGAILK 291 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~-~l~~~i~~~l~~~~----~~~s~~~~-~~~l~~ 291 (490)
.+..+.|+|++|+||||++..++..+.. .+..+..+++....... ..+..+....+... .+....++ ...+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3557889999999999999999988763 23456666654433221 12334444444321 12234344 334444
Q ss_pred HHhcCCCeEEEEEecCccccc
Q psy200 292 YFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 292 ~l~~~~~~~vI~IDEid~l~~ 312 (490)
+... .+-+||||+...+..
T Consensus 176 ~~~~--~~D~viiDtpp~~~~ 194 (295)
T 1ls1_A 176 ARLE--ARDLILVDTAGRLQI 194 (295)
T ss_dssp HHHH--TCCEEEEECCCCSSC
T ss_pred HHhC--CCCEEEEeCCCCccc
Confidence 3322 245999999977643
No 263
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.92 E-value=0.0052 Score=55.11 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..++|+||+|+|||||++.++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 356789999999999999999998875
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.90 E-value=0.0044 Score=54.96 Aligned_cols=25 Identities=44% Similarity=0.624 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+.|.||.|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998764
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.90 E-value=0.0045 Score=55.59 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.|++|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45688999999999999999998876
No 266
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.89 E-value=0.028 Score=57.15 Aligned_cols=97 Identities=13% Similarity=0.244 Sum_probs=61.0
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCceEEEEeccCCC-CHHHHHHHHHHHhcCC--------------CCC
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEI-KDAFKTIYINCNSVR-NAASVYETIVNELKLK--------------PGG 279 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~--------------~~~ 279 (490)
-..++.+.|.|++|+|||+|+..+++.... ..++ ++++-|..-. ...+|++++...=... ...
T Consensus 162 igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v-~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d 240 (498)
T 1fx0_B 162 YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGV-SVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 240 (498)
T ss_dssp CCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSC-EEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTT
T ss_pred cccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCE-EEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCC
Confidence 357889999999999999999999987642 2233 4555554432 4456777766531111 000
Q ss_pred Cc------HHHHHHHHHHHHhc-CCCeEEEEEecCcccccc
Q psy200 280 KS------ERHQLGAILKYFDT-KHKSILLILDEIDALESR 313 (490)
Q Consensus 280 ~s------~~~~~~~l~~~l~~-~~~~~vI~IDEid~l~~~ 313 (490)
.. .....-.+.+++.. .++.++||+|++-++...
T Consensus 241 ~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~A 281 (498)
T 1fx0_B 241 EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQA 281 (498)
T ss_dssp SCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHH
Confidence 11 11122245566766 689999999999887643
No 267
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.89 E-value=0.017 Score=58.97 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=59.7
Q ss_pred cCCCCeEEEECCCCCcHHHH-HHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcC--------CCCCCcHHHH
Q psy200 216 NETSGSMYISGPPGTGKSAS-LNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKL--------KPGGKSERHQ 285 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtl-a~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~--------~~~~~s~~~~ 285 (490)
-+.++.++|.|++|+|||+| +..+++... .++.++++-+..-. ...++++.+...=.. .........+
T Consensus 172 igrGQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 172 IGRGQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp EETTCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cccCCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 35788999999999999999 568877753 55666777666543 334556665542100 1111111111
Q ss_pred -----HHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 286 -----LGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 286 -----~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
.-.+.+++...++.++|++|++-++..
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~ 281 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLSKHAV 281 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHHHHHH
Confidence 123455666678999999999877653
No 268
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=95.87 E-value=0.02 Score=54.27 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 196 LPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 196 lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
+.-+.-+.+.+..++.. +..+|.+++|+|||.++-.++..........++++
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil 163 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILII 163 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence 34555566666666642 34578999999999999777766433333356655
No 269
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.86 E-value=0.058 Score=49.38 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=24.2
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
...+|||||+|.+.... ...+..++.... ...+++++.+|
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~-~~~~~l~~SAT 211 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLP-KKRQTLLFSAT 211 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSC-TTSEEEEEESS
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCC-CCCeEEEEEee
Confidence 34599999999986543 344555554332 34456666555
No 270
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.86 E-value=0.08 Score=51.21 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
.+..++|+|++|+||||++..++..+.. .+..++.+++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCc
Confidence 4567889999999999999999998863 3456666766543
No 271
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.85 E-value=0.024 Score=56.55 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=25.3
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
...+|||||+|.+.... ...+..++... ....+++++.+|-
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~ 220 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYL-PPATQVVLISATL 220 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTS-CTTCEEEEEESCC
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhC-ccCceEEEEEcCC
Confidence 35699999999986554 34455555432 2345666666653
No 272
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.84 E-value=0.016 Score=57.44 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHH-HHHHHHhhhc-CCceEEEE
Q psy200 220 GSMYISGPPGTGKSASL-NLLVSRAEIK-DAFKTIYI 254 (490)
Q Consensus 220 ~~ill~GppGtGKTtla-~~l~~~l~~~-~~~~~~~v 254 (490)
+.+++.+|+|+|||..+ -.+++.+... ....++++
T Consensus 59 ~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 95 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 95 (394)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 56899999999999874 3344444321 22344555
No 273
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.83 E-value=0.0051 Score=55.23 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=22.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
+..+.|+||+|+|||||++.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5678999999999999999998865
No 274
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.81 E-value=0.0073 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+.|+|++|+||||+++.++..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999998764
No 275
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.81 E-value=0.043 Score=56.07 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|+|+.|+|||||++.++..+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 456888999999999999999998875
No 276
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.80 E-value=0.0076 Score=58.33 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=26.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
...++|+||+|+||||++..+++.++ ..++.++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~----~~iis~D 37 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP----CELISVD 37 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC----EEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC----CcEEecc
Confidence 34789999999999999999999874 4455554
No 277
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.80 E-value=0.014 Score=60.61 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHhhhcC-CceEEEE
Q psy200 218 TSGSMYISGPPGTGKSASL-NLLVSRAEIKD-AFKTIYI 254 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla-~~l~~~l~~~~-~~~~~~v 254 (490)
..+.++|.+|.|+|||.++ ..++..+.... ...++++
T Consensus 157 ~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl 195 (508)
T 3fho_A 157 PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 195 (508)
T ss_dssp SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEE
T ss_pred CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 3578999999999999874 34445443222 2245555
No 278
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.79 E-value=0.0074 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=24.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..++|+|++|+||||+++.++..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999999875
No 279
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.76 E-value=0.022 Score=57.69 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=29.9
Q ss_pred CCeEEEECCCCCcHHHHH-HHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASL-NLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla-~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
++.+++.||.|+|||..+ -.+++.+. ..+..++++.- ...+..++...+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~P-----t~~La~Q~~~~~ 51 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAP-----TRVVASEMYEAL 51 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEES-----SHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEECc-----HHHHHHHHHHHh
Confidence 568999999999999985 54554432 23345555531 233455555555
No 280
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.75 E-value=0.013 Score=56.07 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|++|+||||+++.++..+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3556788999999999999999998886
No 281
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.74 E-value=0.024 Score=61.38 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=24.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHH-HHhhhcCCceEEEE
Q psy200 219 SGSMYISGPPGTGKSASLNLLV-SRAEIKDAFKTIYI 254 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~-~~l~~~~~~~~~~v 254 (490)
+..++|.||+|+|||+.+-..+ +.+. ..+..++++
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~il~i 81 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLL-KNGGKAIYV 81 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHH-HSCSEEEEE
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHH-HCCCeEEEE
Confidence 6789999999999999985444 3332 134566666
No 282
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.73 E-value=0.03 Score=56.97 Aligned_cols=95 Identities=18% Similarity=0.272 Sum_probs=59.1
Q ss_pred cCCCCeEEEECCCCCcHHHH-HHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcC--------CCCCCcHHHH
Q psy200 216 NETSGSMYISGPPGTGKSAS-LNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKL--------KPGGKSERHQ 285 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtl-a~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~--------~~~~~s~~~~ 285 (490)
-+.++.++|.|++|+|||++ +..+++.- ..++.++++-+..-. ...+|+.++...=.. .........+
T Consensus 159 igrGQR~~Ifg~~g~GKT~l~l~~I~n~~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 159 IGRGQRELIIGDRQTGKTALAIDAIINQR--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp CBTTCBCEEEESSSSSHHHHHHHHHHTTS--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cccCCEEEeecCCCCCcchHHHHHHHhhc--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 35788999999999999999 46777653 355666777666542 345566665443111 1111111111
Q ss_pred -----HHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 286 -----LGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 286 -----~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
.-.+.+++...++.++|++|++-+...
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~ 268 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDLSKQAV 268 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecChHHHHH
Confidence 123455566678999999999877653
No 283
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.68 E-value=0.0099 Score=61.95 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=27.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHH-HHhhhcCCceEEEEeccC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLV-SRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~-~~l~~~~~~~~~~v~~~~ 258 (490)
.+..++|.|++|+|||||++.++ .-+.. .+-..++++...
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeC
Confidence 57789999999999999999952 32321 123457776544
No 284
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.67 E-value=0.13 Score=43.58 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~ 242 (490)
.++|.|++|+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 285
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.66 E-value=0.019 Score=58.73 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC-
Q psy200 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK- 276 (490)
Q Consensus 198 gre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~- 276 (490)
-+..+.+.+..++. .+.++|.|+.|+|||.++-.++..+. ..++.+ |+...-..++...+.. ++..
T Consensus 94 l~~~Q~~ai~~i~~-------~~~~ll~~~TGsGKT~~~l~~i~~~~----~~~Lvl-~P~~~L~~Q~~~~~~~-~~~~~ 160 (472)
T 2fwr_A 94 LRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINELS----TPTLIV-VPTLALAEQWKERLGI-FGEEY 160 (472)
T ss_dssp BCHHHHHHHHHHTT-------TTEEEEECCTTSCHHHHHHHHHHHHC----SCEEEE-ESSHHHHHHHHHHGGG-GCGGG
T ss_pred cCHHHHHHHHHHHh-------cCCEEEEeCCCCCHHHHHHHHHHHcC----CCEEEE-ECCHHHHHHHHHHHHh-CCCcc
Confidence 34455555554443 24599999999999999988877653 344444 2221112233333322 3221
Q ss_pred ---CCC----------CcHHHHHHHHHHHHhcCCCeEEEEEecCccccccCHHHH
Q psy200 277 ---PGG----------KSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTIL 318 (490)
Q Consensus 277 ---~~~----------~s~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~L 318 (490)
..+ .+.+.+...+.. +. .+..+|||||+|.+.......+
T Consensus 161 v~~~~g~~~~~~~Ivv~T~~~l~~~~~~-~~--~~~~liIvDEaH~~~~~~~~~~ 212 (472)
T 2fwr_A 161 VGEFSGRIKELKPLTVSTYDSAYVNAEK-LG--NRFMLLIFDEVHHLPAESYVQI 212 (472)
T ss_dssp EEEBSSSCBCCCSEEEEEHHHHHHTHHH-HT--TTCSEEEEETGGGTTSTTTHHH
T ss_pred eEEECCCcCCcCCEEEEEcHHHHHHHHH-hc--CCCCEEEEECCcCCCChHHHHH
Confidence 000 022333332222 21 2355999999999976544333
No 286
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.64 E-value=0.0051 Score=54.53 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l 243 (490)
..++|.|++|+||||+++.++...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 467899999999999999998743
No 287
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.64 E-value=0.0077 Score=54.64 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|+|.|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 288
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.63 E-value=0.052 Score=46.43 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~ 242 (490)
...++|.|++|+|||+|++.+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999764
No 289
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.59 E-value=0.01 Score=54.69 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..+.|.||+|+||||+++.+++.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999875
No 290
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.59 E-value=0.034 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=20.1
Q ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASL-NLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla-~~l~~~l~ 244 (490)
.++.+++.+|+|+|||..+ -.+++.+.
T Consensus 63 ~~~~~lv~apTGsGKT~~~~~~~~~~~~ 90 (412)
T 3fht_A 63 PPQNLIAQSQSGTGKTAAFVLAMLSQVE 90 (412)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCeEEEECCCCchHHHHHHHHHHHHhh
Confidence 4578999999999999875 33444443
No 291
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.58 E-value=0.0091 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+.|+|++|+||||+++.++. ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 688999999999999999988 63
No 292
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.58 E-value=0.042 Score=48.32 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.-.|+|.|.+|+|||+|++.+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478899999999999999987654
No 293
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.57 E-value=0.072 Score=49.34 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=23.7
Q ss_pred eEEEEEecCccccccC-HHHHHHhHhCCCCC---CCcEEEEEec
Q psy200 299 SILLILDEIDALESRK-QTILYTIFEWPSIP---GSKLVLVGVA 338 (490)
Q Consensus 299 ~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~---~~~vilI~~t 338 (490)
..+|||||+|.+.... ...+..++...... ..+++++.+|
T Consensus 175 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT 218 (253)
T 1wrb_A 175 CKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSAT 218 (253)
T ss_dssp CCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESS
T ss_pred CCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEe
Confidence 4589999999986543 34455555432222 3455665555
No 294
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.57 E-value=0.065 Score=50.13 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=23.6
Q ss_pred CeEEEEEecCccccccC-HHHHHHhHhCCCCCCCcEEEEEec
Q psy200 298 KSILLILDEIDALESRK-QTILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 298 ~~~vI~IDEid~l~~~~-~~~L~~l~~~~~~~~~~vilI~~t 338 (490)
+..+|||||+|.+.... ...+..++.... ...+++++.+|
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~-~~~q~l~~SAT 241 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKLLP-TRRQTMLFSAT 241 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHHSC-SSSEEEEECSS
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHhCC-CCCeEEEEEec
Confidence 45689999999987653 344444444322 33455555555
No 295
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.57 E-value=0.045 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+.|.|+||+||||+++.+++.++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3567999999999999999999874
No 296
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.52 E-value=0.034 Score=56.31 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=31.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
.++|.+|.|+|||..+-.++..........++++. +...-..++..++...+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~-P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA-PTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC-SSHHHHHHHHHHHHHHB
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEE-CCHHHHHHHHHHHHHHh
Confidence 78899999999999988887665322334555552 22112234445554444
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.52 E-value=0.0085 Score=54.78 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|.||.|+|||||++.++..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 567899999999999999999988763
No 298
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.51 E-value=0.02 Score=56.79 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..++|+||+|+||||+++.++..+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999998753
No 299
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.50 E-value=0.0079 Score=54.31 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|.|+.|+||||+++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456788999999999999999988764
No 300
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.49 E-value=0.032 Score=53.77 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=19.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~ 242 (490)
++.+++.+|+|+|||.++-..+-+
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 357999999999999877655544
No 301
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.48 E-value=0.025 Score=51.39 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 201 VQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 201 ~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..+.+...+. ......++|.|.+|+|||||+..++....
T Consensus 24 ~~a~~~r~~~~----~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 24 RLADKNRKLLN----KHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHH----HTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----hCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33444444443 34567788999999999999999998864
No 302
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.47 E-value=0.0094 Score=55.71 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=24.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|.|++|+||||+++.+++.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456889999999999999999998875
No 303
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.47 E-value=0.009 Score=53.94 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=23.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346788999999999999999998876
No 304
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.46 E-value=0.012 Score=56.47 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|+||+|+|||+|+..+++.+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 346788999999999999999999864
No 305
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.44 E-value=0.031 Score=56.30 Aligned_cols=97 Identities=10% Similarity=0.154 Sum_probs=60.8
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhh---cCCceEEEEeccCCC-CHHHHHHHHHHH--hc-----CCCCCCc-HH
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEI---KDAFKTIYINCNSVR-NAASVYETIVNE--LK-----LKPGGKS-ER 283 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~---~~~~~~~~v~~~~~~-~~~~l~~~i~~~--l~-----~~~~~~s-~~ 283 (490)
-..++.++|.|++|+|||+|+..+++.... .+++.++++-|..-. ...+|+.++... +. ....... ..
T Consensus 148 igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 148 LVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp CBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred cccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 356778889999999999999999988653 345566777666532 345566665443 11 0001111 11
Q ss_pred HH-----HHHHHHHHhc-CCCeEEEEEecCccccc
Q psy200 284 HQ-----LGAILKYFDT-KHKSILLILDEIDALES 312 (490)
Q Consensus 284 ~~-----~~~l~~~l~~-~~~~~vI~IDEid~l~~ 312 (490)
.+ .-.+.+++.. .++.++|++|++-++..
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~A~ 262 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMTNYAE 262 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHH
Confidence 11 1235566665 48899999999987653
No 306
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.44 E-value=0.0095 Score=51.44 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.2
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456688899999999999999999987
No 307
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.43 E-value=0.013 Score=56.85 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|.|++|+||||+++.+...+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344788999999999999999988775
No 308
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.43 E-value=0.13 Score=45.17 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l 243 (490)
-.|+|.|.+|+|||+|++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 368899999999999999998754
No 309
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.41 E-value=0.0089 Score=58.10 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..++|.||+|+|||+|+..|++.++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 345899999999999999999998864
No 310
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.41 E-value=0.0091 Score=54.48 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|+||.|+|||||++.++..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356789999999999999999998865
No 311
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.41 E-value=0.073 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.-.++|.|.+|+|||+|++.+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999754
No 312
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.39 E-value=0.026 Score=63.26 Aligned_cols=117 Identities=13% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC-----CCC-----------CcH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK-----PGG-----------KSE 282 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~-----~~~-----------~s~ 282 (490)
++.+++.||.|+|||.++...+..+. ..+..++++. +...-..+.+..+...+... ..+ .+.
T Consensus 54 g~~vlv~apTGsGKTlv~~~~i~~~~-~~g~~vlvl~-PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~~~~IlV~Tp 131 (997)
T 4a4z_A 54 GDSVFVAAHTSAGKTVVAEYAIAMAH-RNMTKTIYTS-PIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTT 131 (997)
T ss_dssp TCEEEEECCTTSCSHHHHHHHHHHHH-HTTCEEEEEE-SCGGGHHHHHHHHHTTC--CCEEEECSSCEECTTSSEEEEEH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHH-hcCCeEEEEe-CCHHHHHHHHHHHHHHcCCCeEEEEeCCCccCCCCCEEEECH
Confidence 46899999999999987655544432 1233444442 22223344555544433210 000 123
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCccccccCHH-HHHHhHhCCCCCCCcEEEEEec
Q psy200 283 RHQLGAILKYFDTKHKSILLILDEIDALESRKQT-ILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 283 ~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~-~L~~l~~~~~~~~~~vilI~~t 338 (490)
..+...+...........+|||||+|.+...... .+..++... ....+++++.+|
T Consensus 132 e~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l-~~~v~iIlLSAT 187 (997)
T 4a4z_A 132 EILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML-PQHVKFILLSAT 187 (997)
T ss_dssp HHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS-CTTCEEEEEECC
T ss_pred HHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhc-ccCCCEEEEcCC
Confidence 3343333321111134679999999998654211 122222211 134567776666
No 313
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.37 E-value=0.064 Score=55.17 Aligned_cols=95 Identities=21% Similarity=0.349 Sum_probs=58.5
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCC-HHHHHHHHHH----Hhc----------CCCCCC
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN-AASVYETIVN----ELK----------LKPGGK 280 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~-~~~l~~~i~~----~l~----------~~~~~~ 280 (490)
-..++.++|.|++|+|||+|+..+++... .+ .++++-|..-.. ..+++.++-+ .++ ......
T Consensus 224 igkGqr~~I~g~~g~GKT~L~~~ia~~~~--~~-~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~ 300 (588)
T 3mfy_A 224 QAKGGTAAIPGPAGSGKTVTQHQLAKWSD--AQ-VVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNM 300 (588)
T ss_dssp EETTCEEEECSCCSHHHHHHHHHHHHHSS--CS-EEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTS
T ss_pred cccCCeEEeecCCCCCHHHHHHHHHhccC--CC-EEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCC
Confidence 35688999999999999999999987642 23 456666665543 3455555422 011 001111
Q ss_pred cH-HHH-----HHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 281 SE-RHQ-----LGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 281 s~-~~~-----~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
.. ... .-.+.+++...++.++|++|++-++...
T Consensus 301 p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A~A 339 (588)
T 3mfy_A 301 PVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEA 339 (588)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHHHH
Confidence 11 111 1234455666688999999999877654
No 314
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.34 E-value=0.099 Score=46.98 Aligned_cols=27 Identities=33% Similarity=0.581 Sum_probs=23.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.....++|.|++|+|||+|++.+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998754
No 315
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.32 E-value=0.03 Score=50.83 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEecc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~ 257 (490)
.+..|.|.|++|+||||+++.+++.+.. .++.++...-+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~~~~~p 43 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQLTREP 43 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEEESS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcccccCC
Confidence 3567889999999999999999998862 33555554433
No 316
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.31 E-value=0.083 Score=46.10 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
....++|.|++|+|||+|++.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999998654
No 317
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.30 E-value=0.041 Score=56.33 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=20.1
Q ss_pred CCCCeEEEECCCCCcHHHHH-HHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASL-NLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla-~~l~~~l 243 (490)
+.++.+++.||.|+|||... -.++..+
T Consensus 129 ~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 129 EPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp BSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred CCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 34689999999999999874 3444444
No 318
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.27 E-value=0.014 Score=52.18 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
...+.|+|++|+||||+++.+++.++
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34678999999999999999988754
No 319
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.26 E-value=0.023 Score=52.20 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=32.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhc---CCceEEEEeccCCCCHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIK---DAFKTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~---~~~~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
.+..|.|.|++|+||||+++.+++.+... .++.++...-+........+.+++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~ 80 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILL 80 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHH
Confidence 45678899999999999999999998632 1455555544432222333444443
No 320
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.25 E-value=0.011 Score=55.22 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
....|.|.|++|+||||+++.+++.++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 455788999999999999999999876
No 321
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.24 E-value=0.022 Score=51.64 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=33.7
Q ss_pred CCCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 195 ~lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+-...+..+.+...+.. .....++|.|.+|+||||++..++..+.
T Consensus 10 ~l~~~~~~~~~~~~~~~~----~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 10 LLAENKRLAEKNREALRE----SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp -CHHHHHHHHHHHHHHHH----HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHhhcHHHHHHHHHhhcc----cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344455566666665532 3567889999999999999999998864
No 322
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.23 E-value=0.025 Score=57.80 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=32.2
Q ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc
Q psy200 218 TSGSMYISGPPGTGKSAS-LNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK 274 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtl-a~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~ 274 (490)
.++.+++.||+|+|||+. +-.+++.+.. .+..++++. -...+..++...+.
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~-----Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLA-----PTRVVAAEMAEALR 71 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEE-----CSHHHHHHHHHHTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEC-----chHHHHHHHHHHhc
Confidence 467899999999999997 4555554431 234455553 12446666666664
No 323
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.22 E-value=0.012 Score=56.47 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
...++|.||+|+|||+|+..+++.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35788999999999999999998864
No 324
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.20 E-value=0.012 Score=55.39 Aligned_cols=28 Identities=25% Similarity=0.623 Sum_probs=25.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..++|+||.|+||||+++.++..+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4567899999999999999999998775
No 325
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.20 E-value=0.044 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~ 241 (490)
.....++|.|++|+|||+|++.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4566899999999999999988863
No 326
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.11 Score=58.41 Aligned_cols=117 Identities=12% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC---CCCC-----------CcHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL---KPGG-----------KSERH 284 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~---~~~~-----------~s~~~ 284 (490)
+..+++.+|.|+|||.++...+.... ..+..++++.- .-.-..+.+..+...++. -..+ .+.+.
T Consensus 101 g~~vLV~apTGSGKTlva~lai~~~l-~~g~rvL~l~P-tkaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~ 178 (1010)
T 2xgj_A 101 GESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSP-IKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEI 178 (1010)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHH-HTTCEEEEEES-SHHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHh-ccCCeEEEECC-hHHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHH
Confidence 45799999999999998755444322 23445666532 111123334444333321 0000 12333
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCccccccCHHH-HHHhHhCCCCCCCcEEEEEec
Q psy200 285 QLGAILKYFDTKHKSILLILDEIDALESRKQTI-LYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 285 ~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~~-L~~l~~~~~~~~~~vilI~~t 338 (490)
+...+.........-.+|||||+|.+....... +..++... ....+++++.+|
T Consensus 179 L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l-~~~~~il~LSAT 232 (1010)
T 2xgj_A 179 LRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL-PDKVRYVFLSAT 232 (1010)
T ss_dssp HHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS-CTTCEEEEEECC
T ss_pred HHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhc-CCCCeEEEEcCC
Confidence 333332211111345699999999997653222 22222221 234566666666
No 327
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.16 E-value=0.015 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+.|.|++|+||||+++.++..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 788999999999999999999875
No 328
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=95.12 E-value=0.025 Score=57.68 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=58.2
Q ss_pred CCCCeEEEECCCCCcHHHH-HHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcC--------CCCC-----Cc
Q psy200 217 ETSGSMYISGPPGTGKSAS-LNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKL--------KPGG-----KS 281 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtl-a~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~--------~~~~-----~s 281 (490)
+.++.++|.|++|+|||+| +..+++... .++.++++-+..-. ...++++++...=.. .... .-
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 5678899999999999999 568877653 56666777666542 233445444331000 0100 01
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCcccccc
Q psy200 282 ERHQLGAILKYFDTKHKSILLILDEIDALESR 313 (490)
Q Consensus 282 ~~~~~~~l~~~l~~~~~~~vI~IDEid~l~~~ 313 (490)
.....-.+.+++...++.++|++|++-++...
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A 270 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLSKQAQA 270 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHHHHHH
Confidence 11222344555666689999999998776543
No 329
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.11 E-value=0.063 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=17.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~ 241 (490)
++.+++.+|.|+|||...-..+.
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999995544433
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.10 E-value=0.0089 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|+|++|+||||+++.++..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45578899999999999999998764
No 331
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.10 E-value=0.043 Score=59.47 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=24.6
Q ss_pred CCeEEEECCCCCcHHHHHH-HHHHHhhhcCCceEEEEe
Q psy200 219 SGSMYISGPPGTGKSASLN-LLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~-~l~~~l~~~~~~~~~~v~ 255 (490)
+..++|.||.|+|||+.+. .+++.+.. .+..++++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~~l~i~ 75 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIV 75 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEEC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHh-CCCEEEEEc
Confidence 5789999999999999884 44444321 234566663
No 332
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.08 E-value=0.033 Score=53.51 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|.|+.|+||||+++.++..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999999876
No 333
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.032 Score=63.29 Aligned_cols=117 Identities=12% Similarity=0.195 Sum_probs=59.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcC---CCC------C-----CcHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKL---KPG------G-----KSERH 284 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~---~~~------~-----~s~~~ 284 (490)
+..+++.|+.|+|||.++...+.... ..+..++++. +.-.-..+.+..+...++. -.. + .+...
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~-PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~ 276 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTS-PIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEI 276 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEE-SSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEc-CcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeChHH
Confidence 56899999999999998765554432 2334555552 2111123334444443321 000 0 13334
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCccccccCHH-HHHHhHhCCCCCCCcEEEEEec
Q psy200 285 QLGAILKYFDTKHKSILLILDEIDALESRKQT-ILYTIFEWPSIPGSKLVLVGVA 338 (490)
Q Consensus 285 ~~~~l~~~l~~~~~~~vI~IDEid~l~~~~~~-~L~~l~~~~~~~~~~vilI~~t 338 (490)
+...+......-....+|||||+|.+...... .+..++... ....+++++.+|
T Consensus 277 L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l-~~~~qvl~lSAT 330 (1108)
T 3l9o_A 277 LRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL-PDKVRYVFLSAT 330 (1108)
T ss_dssp HHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS-CTTSEEEEEECS
T ss_pred HHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhc-CCCceEEEEcCC
Confidence 44433321000023559999999999754322 222233222 245667777666
No 334
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.05 E-value=0.06 Score=48.17 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=33.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHH
Q psy200 222 MYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIV 270 (490)
Q Consensus 222 ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~ 270 (490)
|.|-|.-|+||||.++.+++.+.. .+..++...-+...........++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~-~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK-RGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCCcHHHHHHHHh
Confidence 668899999999999999998863 345666665554434444444444
No 335
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.01 E-value=0.06 Score=54.21 Aligned_cols=97 Identities=10% Similarity=0.167 Sum_probs=60.1
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhh----------cCCceEEEEeccCCC-CHHHHHHHHHHH--hc------CC
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEI----------KDAFKTIYINCNSVR-NAASVYETIVNE--LK------LK 276 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~----------~~~~~~~~v~~~~~~-~~~~l~~~i~~~--l~------~~ 276 (490)
-..++.+.|.|++|+|||+|+..+++.... ..++.++++-|..-. ...+|+.++... +. ..
T Consensus 144 igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t 223 (464)
T 3gqb_B 144 LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNK 223 (464)
T ss_dssp CBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEE
T ss_pred cccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEEC
Confidence 356778889999999999999999988653 345566777665432 345566655432 10 00
Q ss_pred CCCCcHHHH-----HHHHHHHHhc-CCCeEEEEEecCccccc
Q psy200 277 PGGKSERHQ-----LGAILKYFDT-KHKSILLILDEIDALES 312 (490)
Q Consensus 277 ~~~~s~~~~-----~~~l~~~l~~-~~~~~vI~IDEid~l~~ 312 (490)
........+ .-.+.+++.. .++.++|++|++-++..
T Consensus 224 ~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~ 265 (464)
T 3gqb_B 224 ADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSE 265 (464)
T ss_dssp TTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHH
Confidence 111111111 1234566665 58899999999977653
No 336
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.01 E-value=0.024 Score=54.55 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|+||.|+||||+++.++..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 456888999999999999999998876
No 337
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.01 E-value=0.013 Score=52.27 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.....|.|+|++|+||||+++.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34567899999999999999999875
No 338
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=95.00 E-value=0.089 Score=54.33 Aligned_cols=93 Identities=16% Similarity=0.283 Sum_probs=55.4
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcCCCCC---------------
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKLKPGG--------------- 279 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~~~~--------------- 279 (490)
-..++.+.|.|++|+|||+|+..+++... .+ .++++-|..-. ...+++.++-+ +..+..|
T Consensus 229 igrGqr~~Ifgg~g~GKT~L~~~ia~~~~--~~-v~V~~~iGER~~Ev~e~~~~~~e-l~d~~~G~~~m~rtvvV~~tsd 304 (600)
T 3vr4_A 229 VTKGGAAAVPGPFGAGKTVVQHQIAKWSD--VD-LVVYVGCGERGNEMTDVVNEFPE-LIDPNTGESLMERTVLIANTSN 304 (600)
T ss_dssp CBTTCEEEEECCTTSCHHHHHHHHHHHSS--CS-EEEEEEEEECHHHHHHHHHHTTT-CBCTTTCSBGGGGEEEEEEETT
T ss_pred ccCCCEEeeecCCCccHHHHHHHHHhccC--CC-EEEEEEecccHHHHHHHHHHHHh-hcccccccccccceEEEEECCC
Confidence 35688999999999999999999988743 23 35666555431 23344443211 1111111
Q ss_pred Cc-HHHH-----HHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 280 KS-ERHQ-----LGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 280 ~s-~~~~-----~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
.. .... .-.+.+++...++.++|++|.+-++..
T Consensus 305 ~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~ 343 (600)
T 3vr4_A 305 MPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAE 343 (600)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHH
Confidence 11 1111 123445666668899999999986653
No 339
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.00 E-value=0.036 Score=58.95 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 200 EVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+.+.+.+...+. .+.++|.||||||||+++..++..+.
T Consensus 183 ~~Q~~av~~~l~-------~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 183 HSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp HHHHHHHHHHHT-------CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-------CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 445555555442 35789999999999999998888765
No 340
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.00 E-value=0.058 Score=50.49 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
..-.|+|.|.+|+|||||++++...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999864
No 341
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.99 E-value=0.024 Score=51.89 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=25.7
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
...+..|.|.|+.|+||||+++.+++.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 446778889999999999999999999864
No 342
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.99 E-value=0.0069 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.|.|.|++|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999885
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.98 E-value=0.017 Score=50.35 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=27.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
...+.|.|++|+||||++..++..+.. .++.+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~-~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVR-EGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHh-cCCeeeEEE
Confidence 457889999999999999999998752 234444443
No 344
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.96 E-value=0.013 Score=52.69 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~ 241 (490)
.+.|+|++|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 345
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.95 E-value=0.031 Score=53.93 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|++|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4566888999999999999999998875
No 346
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.95 E-value=0.047 Score=55.30 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=58.2
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhc---CCceEEEEeccCCC-CHHHHHHHHHHHhcC--------CCCCCcHH
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIK---DAFKTIYINCNSVR-NAASVYETIVNELKL--------KPGGKSER 283 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~---~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~--------~~~~~s~~ 283 (490)
-..++.++|.|++|+|||+|+..+++..... .++.++++-|..-. ...+|++++...=.. ........
T Consensus 149 igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 149 LVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp CBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHH
Confidence 3567788889999999999999999886521 13456666665532 345666666543110 11111111
Q ss_pred H-----HHHHHHHHHh-cCCCeEEEEEecCcccc
Q psy200 284 H-----QLGAILKYFD-TKHKSILLILDEIDALE 311 (490)
Q Consensus 284 ~-----~~~~l~~~l~-~~~~~~vI~IDEid~l~ 311 (490)
. ..-.+.+++. ..++.++|++|++-++.
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A 262 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTDITNYA 262 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHH
Confidence 1 1123445565 35889999999876654
No 347
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.94 E-value=0.01 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=17.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHH-HHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLV-SRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~-~~l 243 (490)
.+..+.|+||+|+||||+++.++ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46788999999999999999998 664
No 348
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.88 E-value=0.053 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=17.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~ 241 (490)
++.+++.+|+|+|||..+-..+-
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 36799999999999987644433
No 349
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.87 E-value=0.018 Score=55.34 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|+||+|+|||||++.++..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 567889999999999999999999876
No 350
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.86 E-value=0.08 Score=51.55 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=35.4
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHH
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA 263 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~ 263 (490)
......+++.|.+|+||||++-.++..+.. .+.+++.+++-...+..
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~-~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAK-VRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTT-SSSCEEEEECCSSCHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEECCCCCChh
Confidence 345678899999999999999999998863 34577777776443333
No 351
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.85 E-value=0.033 Score=60.12 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=24.5
Q ss_pred CCeEEEECCCCCcHHHHHHHH-HHHhhhcCCceEEEEe
Q psy200 219 SGSMYISGPPGTGKSASLNLL-VSRAEIKDAFKTIYIN 255 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l-~~~l~~~~~~~~~~v~ 255 (490)
++.++|.||+|+|||+.+-.. .+.+. .+..++++.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~--~~~~~l~i~ 75 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVV 75 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHH--hCCcEEEEe
Confidence 578999999999999998443 34433 234566663
No 352
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=94.85 E-value=0.074 Score=39.66 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhccccCCcccccCHHHHHHH
Q psy200 365 APYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSG-DIRKAIDITNHLIDLTYDNVKENGEVTGIGLKEVLGV 443 (490)
Q Consensus 365 ~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~G-d~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v~~a 443 (490)
+.++.++..+||+.++...... ++..++.|++ .+.| .-..+-++|..|...|..++ ...|+.+||..|
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~---~~~dl~~la~---~t~G~SGADi~~l~~eA~~~a~~~~-----~~~i~~~d~~~A 69 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT---RGINLRKIAE---LMPGASGAEVKGVCTEAGMYALRER-----RVHVTQEDFEMA 69 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC---TTCCHHHHHH---TCTTCCHHHHHHHHHHHHHHHHHTT-----CSEECHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC---CccCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHhC-----CCCCCHHHHHHH
Confidence 3578899999999888765211 2334777877 3344 23444568999999999888 678999999999
Q ss_pred HHHhcc
Q psy200 444 ISSVYC 449 (490)
Q Consensus 444 ~~~~~~ 449 (490)
+..+..
T Consensus 70 l~~v~~ 75 (78)
T 3kw6_A 70 VAKVMQ 75 (78)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998764
No 353
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.85 E-value=0.052 Score=49.26 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=34.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCc-eEEEEeccCCCCHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAF-KTIYINCNSVRNAASVYETIVN 271 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~-~~~~v~~~~~~~~~~l~~~i~~ 271 (490)
+..|.|.|+.|+||||+++.+++.+... ++ .++...-+........++.++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 4678899999999999999999998633 33 3444433332223444555544
No 354
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.84 E-value=0.026 Score=56.79 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=24.9
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++.++|+||.|+||||++++++..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999999875
No 355
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.84 E-value=0.055 Score=53.23 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=29.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
+....+.|+|.+|+||||++..++..+.. .+.++..+.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~-~g~kV~vi~~ 115 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIE-RGHRVAVLAV 115 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHh-CCCceEEEec
Confidence 45668899999999999999999988742 2334444444
No 356
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.83 E-value=0.042 Score=54.03 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|+|+.|+||||+++.++..+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 355788999999999999999999876
No 357
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.83 E-value=0.025 Score=52.10 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|++|+||||+++.++..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3566899999999999999999998875
No 358
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.83 E-value=0.021 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..|.|.|++|+||||+++.++. ++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TT
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cC
Confidence 45788999999999999999976 53
No 359
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.78 E-value=0.037 Score=56.36 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=29.7
Q ss_pred CCeEEEECCCCCcHHHH-HHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhc
Q psy200 219 SGSMYISGPPGTGKSAS-LNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK 274 (490)
Q Consensus 219 ~~~ill~GppGtGKTtl-a~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~ 274 (490)
...+++.||+|+|||+. +-.++..+.. .+..++++. -...+..++...+.
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~-----Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILA-----PTRVVAAEMEEALR 69 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEE-----SSHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEEC-----CCHHHHHHHHHHhc
Confidence 45679999999999993 4444444322 233455553 12446666666663
No 360
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.77 E-value=0.032 Score=57.68 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=27.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
+.+++|+||+|+||||++++++..+. +...++.+..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied 295 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIED 295 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcC
Confidence 55799999999999999999988774 3344555543
No 361
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.77 E-value=0.13 Score=45.25 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~ 241 (490)
...-.++|.|++|+|||+|++.+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998854
No 362
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.75 E-value=0.079 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
..|+|.|++|+|||+|++.+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999764
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.73 E-value=0.036 Score=53.40 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|+.|+||||+++.++..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556888999999999999999988764
No 364
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.71 E-value=0.017 Score=55.35 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l 243 (490)
..++|.|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999998853
No 365
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.70 E-value=0.28 Score=43.87 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
-.|+|.|.+|+|||+|++.+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999998753
No 366
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.70 E-value=0.053 Score=48.84 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=34.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIV 270 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~ 270 (490)
.-|.|-|.-|+||||+++.+++.+. .++.++...-+........+..++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~~~~eP~~t~~g~~ir~~l 51 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV--KDYDVIMTREPGGVPTGEEIRKIV 51 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT--TTSCEEEEESSTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeeCCCCChHHHHHHHHH
Confidence 4577899999999999999999985 456666665444333334444443
No 367
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.69 E-value=0.02 Score=53.15 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.||.|+||||+++.++..++
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456788999999999999999988764
No 368
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.69 E-value=0.04 Score=57.86 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=29.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
..+..|+|+|.+|+||||+++.+++.+.......++.++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 345678899999999999999999998633224455564
No 369
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.68 E-value=0.061 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~ 241 (490)
....++|.|++|+|||+|++.+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 445788999999999999999864
No 370
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.66 E-value=0.015 Score=52.04 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..++|.||+|+|||+|+..+++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999998765
No 371
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.64 E-value=0.069 Score=46.58 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.....++|.|++|+|||+|++.+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998754
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.64 E-value=0.03 Score=55.52 Aligned_cols=29 Identities=24% Similarity=0.580 Sum_probs=25.3
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
..+..++|+||+|+||||+++.++..+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 45678999999999999999999998753
No 373
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.64 E-value=0.023 Score=55.25 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++|.||+|+||||++..++..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4788999999999999999999874
No 374
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.64 E-value=0.057 Score=49.83 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCce-EEEEecc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFK-TIYINCN 257 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~-~~~v~~~ 257 (490)
.+..|.|.|++|+||||+++.+++.+... ++. ++...-+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep 65 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREP 65 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCC
Confidence 45688899999999999999999988632 344 4444433
No 375
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.63 E-value=0.017 Score=53.35 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456789999999999999999998655
No 376
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.63 E-value=0.025 Score=49.62 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
...+.|.|++|+||||+++.++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46788999999999999999998875
No 377
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.031 Score=49.20 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
....++|.|++|+|||+|++.+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999865
No 378
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.60 E-value=0.028 Score=50.93 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..+.|+|++|+||||+++.+++.++
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34789999999999999999998864
No 379
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.60 E-value=0.063 Score=55.39 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 197 vgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
.-+..+.+.+..++.. ..++|.|+.|+|||.++-.++..........++++
T Consensus 113 ~l~~~Q~~ai~~~~~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl 163 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILII 163 (510)
T ss_dssp CCCHHHHHHHHHHHHH-------SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred CCCHHHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3455666666666642 57899999999999998777665432233355555
No 380
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.59 E-value=0.042 Score=48.45 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.-.|+|.|++|+|||+|++++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 381
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.58 E-value=0.025 Score=56.25 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..++|.||+|+|||+|+..+++.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4688999999999999999999875
No 382
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.58 E-value=0.37 Score=46.19 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.2
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.+.+.+.|+|.+|+|||||++++...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34567889999999999999999764
No 383
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.57 E-value=0.034 Score=57.25 Aligned_cols=48 Identities=8% Similarity=-0.109 Sum_probs=33.7
Q ss_pred CCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhh
Q psy200 196 LPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEI 245 (490)
Q Consensus 196 lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~ 245 (490)
...+.+..+.+.+.... ....+..|+|.|.+|+||||+++++++.+..
T Consensus 374 ~f~rpeV~~vLr~~~~~--~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPP--RPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCC--GGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhccc--ccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34445555455554321 1235578999999999999999999999974
No 384
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.55 E-value=0.37 Score=54.90 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCC--
Q psy200 199 REVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLK-- 276 (490)
Q Consensus 199 re~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~-- 276 (490)
+..+.+.+..++... ..+.+..++|+|+.|+|||.++-..+-... ..+..++++ ++...-..+++..+...+...
T Consensus 605 t~~Q~~ai~~il~~~-~~g~p~d~ll~~~TGsGKT~val~aa~~~~-~~g~~vlvl-vPt~~La~Q~~~~~~~~~~~~~i 681 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDM-CQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVL-VPTTLLAQQHYDNFRDRFANWPV 681 (1151)
T ss_dssp CHHHHHHHHHHHHHH-HSSSCCEEEEECCCCTTTHHHHHHHHHHHH-TTTCEEEEE-CSSHHHHHHHHHHHHHHSTTTTC
T ss_pred CHHHHHHHHHHHHHH-hcCCcCcEEEECCCCCCHHHHHHHHHHHHH-HhCCeEEEE-echHHHHHHHHHHHHHHhhcCCC
Confidence 455555555555432 234556899999999999988764443322 123344444 222212334455554443221
Q ss_pred -----CCCCcHHHHHHHHHHH--------------Hhc---CCCeEEEEEecCccccccCHHHHHHhHhCCCCCCCcEEE
Q psy200 277 -----PGGKSERHQLGAILKY--------------FDT---KHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVL 334 (490)
Q Consensus 277 -----~~~~s~~~~~~~l~~~--------------l~~---~~~~~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vil 334 (490)
....+..+....+... +.. .....+|||||+|.+.......+..+. ....+++
T Consensus 682 ~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~~~l~~l~-----~~~~vl~ 756 (1151)
T 2eyq_A 682 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMR-----ANVDILT 756 (1151)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHHHHHHHHH-----TTSEEEE
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHHHHHHHhc-----CCCCEEE
Confidence 0111222322222221 111 134569999999997544333333332 2345555
Q ss_pred EEec
Q psy200 335 VGVA 338 (490)
Q Consensus 335 I~~t 338 (490)
+.+|
T Consensus 757 lSAT 760 (1151)
T 2eyq_A 757 LTAT 760 (1151)
T ss_dssp EESS
T ss_pred EcCC
Confidence 5555
No 385
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.53 E-value=0.026 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|.|+|++|+||||+++.++ .++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCC
Confidence 34578999999999999999998 443
No 386
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.49 E-value=0.017 Score=52.94 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.||.|+|||||++.++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56788899999999999999998655
No 387
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.43 E-value=0.033 Score=58.75 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=31.8
Q ss_pred CCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 196 LPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 196 lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+.-|..+.+.+...+.... ...+.++|+++.|+|||.++-.++..+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~--~~~~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVL--QGKKRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp --CCHHHHHHHHHHHHHHH--TTCSEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHh--cCCCceEEEecCCCChHHHHHHHHHHHH
Confidence 3556666666666555432 2346688999999999999888777664
No 388
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.43 E-value=0.02 Score=52.92 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.||.|+|||||++.++..+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567899999999999999999987653
No 389
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.42 E-value=0.049 Score=48.07 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
....|+|.|.+|+|||+|++.+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998653
No 390
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.39 E-value=0.056 Score=59.09 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 200 EVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+.+.+.+...+. .+.++|.||||||||+++..++..+.
T Consensus 359 ~~Q~~Av~~~l~-------~~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 359 HSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp HHHHHHHHHHHT-------SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-------CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445555554442 35789999999999999998888775
No 391
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.38 E-value=0.02 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~ 242 (490)
+..+.|.||.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 568889999999999999999876
No 392
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.37 E-value=0.19 Score=54.71 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=25.0
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
.+.+..++|.|+.|+|||.++-..+-..-. .+..++++
T Consensus 386 ~~~~~~~Ll~a~TGSGKTlvall~il~~l~-~g~qvlvl 423 (780)
T 1gm5_A 386 SEKPMNRLLQGDVGSGKTVVAQLAILDNYE-AGFQTAFM 423 (780)
T ss_dssp SSSCCCCEEECCSSSSHHHHHHHHHHHHHH-HTSCEEEE
T ss_pred ccCCCcEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 344568999999999999987655443311 23445555
No 393
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=94.36 E-value=0.22 Score=55.72 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=47.6
Q ss_pred CCChHHHHHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCc-eEEEEeccCCCCHHHHHHHHHHHhc
Q psy200 196 LPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAF-KTIYINCNSVRNAASVYETIVNELK 274 (490)
Q Consensus 196 lvgre~~~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~-~~~~v~~~~~~~~~~l~~~i~~~l~ 274 (490)
+--+..+.+.+...+. .....++|.++.|+|||..+-.++..+...... .++.+ |+. .-..++..++...++
T Consensus 152 ~~LrpyQ~eav~~~l~-----~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIV-vP~-sLl~Qw~~E~~~~f~ 224 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGR-----RHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLII-VPE-TLQHQWLVEMLRRFN 224 (968)
T ss_dssp SCCCHHHHHHHHHHHH-----SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEE-CCT-TTHHHHHHHHHHHSC
T ss_pred CCCcHHHHHHHHHHHH-----hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE-eCH-HHHHHHHHHHHHHhC
Confidence 4445666666665554 235678999999999999998888776433322 44444 444 456777777766664
Q ss_pred C
Q psy200 275 L 275 (490)
Q Consensus 275 ~ 275 (490)
.
T Consensus 225 l 225 (968)
T 3dmq_A 225 L 225 (968)
T ss_dssp C
T ss_pred C
Confidence 3
No 394
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.35 E-value=0.037 Score=58.71 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=31.4
Q ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSAS-LNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtl-a~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
.++.+++.+++|+|||+. +-.+++.+.. .+..++++. -...+..++...+
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~-----PtreLa~Qi~~~l 235 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILA-----PTRVVAAEMEEAL 235 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEE-----SSHHHHHHHHHHT
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEc-----ChHHHHHHHHHHh
Confidence 467899999999999996 3445444432 333455553 1244666666666
No 395
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.33 E-value=0.022 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788999999999999999998765
No 396
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.30 E-value=0.021 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.||.|+|||||++.++..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56788899999999999999998765
No 397
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=94.26 E-value=0.059 Score=41.16 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=57.1
Q ss_pred EEeCCCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHhccccCCcccccCHHHH
Q psy200 362 MNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGD-IRKAIDITNHLIDLTYDNVKENGEVTGIGLKEV 440 (490)
Q Consensus 362 i~~~pls~~e~~~il~~~l~~~~~~~~~~~~~i~~i~~~i~~~~Gd-~r~ai~ll~~a~~~a~~~~~~~~~~~~It~~~v 440 (490)
..-.|++.++..+||+..+...... ++..++.|++ .+.|- -..+-++|+.|...|.++. ...|+.+||
T Consensus 6 ~~~~~Pd~~~R~~IL~~~l~~~~l~---~dvdl~~LA~---~T~G~SGADL~~l~~eAa~~alr~~-----~~~I~~~df 74 (86)
T 2krk_A 6 HHHSHPNEEARLDILKIHSRKMNLT---RGINLRKIAE---LMPGASGAEVKGVCTEAGMYALRER-----RVHVTQEDF 74 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHTTTSEEC---TTCCCHHHHH---TCSSCCHHHHHHHHHHHHHHHHHTT-----CSEECHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHcCCCCC---cccCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHc-----CCCCCHHHH
Confidence 4457999999999999988765211 2233677776 33342 3344568999999999887 678999999
Q ss_pred HHHHHHhccC
Q psy200 441 LGVISSVYCT 450 (490)
Q Consensus 441 ~~a~~~~~~~ 450 (490)
..|+..+.+.
T Consensus 75 ~~Al~~v~p~ 84 (86)
T 2krk_A 75 EMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHccC
Confidence 9999988653
No 398
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.25 E-value=0.027 Score=55.59 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=28.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
.+..++|+|+.|+||||+++.++..+. .....+.++
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEEC
Confidence 467899999999999999999988764 333455555
No 399
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.23 E-value=0.05 Score=52.97 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCC
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~ 298 (490)
+..++|+|+.|+||||+++.++..+. +.-..+.++.......... . +.+..-. + ........+..++. .+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g-gg~~~r~~la~aL~--~~ 240 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHH-K---NYTQLFF-G-GNITSADCLKSCLR--MR 240 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSC-S---SEEEEEC-B-TTBCHHHHHHHHTT--SC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccc-h---hEEEEEe-C-CChhHHHHHHHHhh--hC
Confidence 56899999999999999999988764 3334556654321110000 0 0000000 0 11233444555554 45
Q ss_pred eEEEEEecCcc
Q psy200 299 SILLILDEIDA 309 (490)
Q Consensus 299 ~~vI~IDEid~ 309 (490)
|-+|++||.-.
T Consensus 241 p~ilildE~~~ 251 (330)
T 2pt7_A 241 PDRIILGELRS 251 (330)
T ss_dssp CSEEEECCCCS
T ss_pred CCEEEEcCCCh
Confidence 77999999876
No 400
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.22 E-value=0.13 Score=51.13 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=15.2
Q ss_pred CCeEEEECCCCCcHHHHH
Q psy200 219 SGSMYISGPPGTGKSASL 236 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla 236 (490)
++.+++.+|.|+|||...
T Consensus 52 ~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHH
Confidence 467999999999999743
No 401
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.21 E-value=0.028 Score=52.93 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
..+..+.|.||.|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999875
No 402
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.21 E-value=0.03 Score=49.07 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+|+|+.|+||||++++|+-.+.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34788999999999999999987664
No 403
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.19 E-value=0.041 Score=57.41 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=25.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..++|+|++|+||||+++.++..+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3567899999999999999999999886
No 404
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.19 E-value=1.7 Score=41.41 Aligned_cols=24 Identities=46% Similarity=0.583 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.+.+.|.|.+|+|||||++++...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999764
No 405
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.16 E-value=0.23 Score=50.02 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=25.5
Q ss_pred CCeEEEEEecCccccccC-HHHHHHhHhCCC-CCCCcEEEEEec
Q psy200 297 HKSILLILDEIDALESRK-QTILYTIFEWPS-IPGSKLVLVGVA 338 (490)
Q Consensus 297 ~~~~vI~IDEid~l~~~~-~~~L~~l~~~~~-~~~~~vilI~~t 338 (490)
.+..+|||||+|.+.... ...+..++.... ....+++++.+|
T Consensus 202 ~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT 245 (434)
T 2db3_A 202 EDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSAT 245 (434)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESC
T ss_pred ccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEecc
Confidence 345699999999987653 344555554332 234456666555
No 406
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.15 E-value=0.025 Score=53.15 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 466789999999999999999998765
No 407
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.13 E-value=0.029 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.+..+.|.||.|+|||||++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678899999999999999999875
No 408
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.11 E-value=0.024 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.||.|+|||||++.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56788899999999999999998765
No 409
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.10 E-value=0.03 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.. ..+.|.||.|+|||||++.++..+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 788899999999999999998765
No 410
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.10 E-value=0.025 Score=51.94 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|.||.|+|||||++.++..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 567889999999999999999987653
No 411
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.09 E-value=0.055 Score=50.35 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=29.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEecc
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~ 257 (490)
....+++.|.+|+||||++..++..+. .+.++..+++-
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D 50 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLD 50 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 445788999999999999999998886 44566666543
No 412
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.09 E-value=0.035 Score=55.64 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 203 LEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 203 ~~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
...+.++|.... .....+.|.|++|+|||||++.++...
T Consensus 55 ~~~i~~~L~~~~--~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 55 NSAISDALKEID--SSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHHH--HCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred chhhhhhhhhcc--cCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 344555555432 345688899999999999999998743
No 413
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.08 E-value=0.025 Score=52.39 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.||.|+|||||++.++..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56788899999999999999998765
No 414
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.06 E-value=0.026 Score=53.47 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356788999999999999999998755
No 415
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.05 E-value=0.021 Score=54.50 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=26.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
....|.|.|++|+||||+++.+++.++.. ++.+..++...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~~D~~ 44 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIEGDAF 44 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEEGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEeecchh
Confidence 34578899999999999999999877521 223455555444
No 416
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.03 E-value=0.026 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.||.|+|||||++.++..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56788999999999999999997765
No 417
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.02 E-value=0.025 Score=52.45 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356788999999999999999998765
No 418
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.01 E-value=0.034 Score=52.73 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.||.|+|||||++.++..+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3567889999999999999999987653
No 419
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.01 E-value=0.028 Score=52.80 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 466789999999999999999998754
No 420
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.99 E-value=0.028 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788999999999999999998765
No 421
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.98 E-value=0.027 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.||.|+|||||++.++..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56788999999999999999998765
No 422
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.96 E-value=0.028 Score=53.08 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998765
No 423
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.96 E-value=0.042 Score=49.38 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=23.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
...|.|.|+.|+|||++++.+++.++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999999986
No 424
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.94 E-value=0.03 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
+..|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999999873
No 425
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.94 E-value=0.13 Score=48.50 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCeEEEECC-CCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 200 EVQLEGIRQFLLGHVNNETSGSMYISGP-PGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~~~~~~ill~Gp-pGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
.+.+..|+..|.........+.++|+|+ +|+||||++-.++..+.. .+.+++.+++..-
T Consensus 63 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~-~G~rVLLID~D~~ 122 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQ-AGYKTLIVDGDMR 122 (271)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCSS
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence 3566677777765434456678888876 899999999999998863 4557788877543
No 426
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.94 E-value=0.028 Score=52.95 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356788999999999999999998765
No 427
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.93 E-value=0.03 Score=54.98 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 356788899999999999999998765
No 428
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.92 E-value=0.24 Score=51.69 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.4
Q ss_pred CCCeEEEECCCCCcHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASL 236 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla 236 (490)
.++.+++.+|.|+|||...
T Consensus 110 ~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 4678999999999999853
No 429
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.87 E-value=0.048 Score=55.36 Aligned_cols=50 Identities=12% Similarity=0.259 Sum_probs=30.9
Q ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASL-NLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla-~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
.++.+++.||.|+|||..+ -.+++.+.. .+...+++. -...+..++...+
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~-----Ptr~La~Q~~~~l 57 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLA-----PTRVVLSEMKEAF 57 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEE-----SSHHHHHHHHHHT
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEc-----chHHHHHHHHHHH
Confidence 4678999999999999984 445554432 334455553 1234555555555
No 430
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.87 E-value=0.032 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~ 242 (490)
.++|.|++|+|||||++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 431
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=93.84 E-value=0.089 Score=54.10 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=54.6
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC-CHHHHHHHHHHHhcCCCCC---------------
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR-NAASVYETIVNELKLKPGG--------------- 279 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~-~~~~l~~~i~~~l~~~~~~--------------- 279 (490)
-..++.+.|.|++|+|||+|+..+++... .+ .++++-|..-. ...+++.++-+ +..+..|
T Consensus 218 igrGqr~~Ifg~~g~GKT~l~~~ia~~~~--~~-v~V~~~iGER~~Ev~e~~~~~~e-l~d~~~G~~~~~rtvvv~~tsd 293 (578)
T 3gqb_A 218 VAMGGTAAIPGPFGSGKSVTQQSLAKWSN--AD-VVVYVGSGERGNEMTDVLVEFPE-LTDPKTGGPLMHRTVLIANTSN 293 (578)
T ss_dssp EETTCEEEECCCTTSCHHHHHHHHHHHSS--CS-EEEEEEEEECHHHHHHHHTTGGG-CBCTTTSSBSGGGEEEEEEETT
T ss_pred ccCCCEEeeeCCCCccHHHHHHHHHhccC--CC-EEEEEEecccHHHHHHHHHHHHh-hcccccccccccceEEEEECCC
Confidence 35688999999999999999999988743 23 35566555431 22333333211 1111111
Q ss_pred CcH-HHH-----HHHHHHHHhcCCCeEEEEEecCccccc
Q psy200 280 KSE-RHQ-----LGAILKYFDTKHKSILLILDEIDALES 312 (490)
Q Consensus 280 ~s~-~~~-----~~~l~~~l~~~~~~~vI~IDEid~l~~ 312 (490)
... ... .-.+.+++...++.++|++|.+-++..
T Consensus 294 ~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~ 332 (578)
T 3gqb_A 294 MPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAE 332 (578)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChHHHHH
Confidence 111 111 123445565668899999999886653
No 432
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.84 E-value=0.031 Score=52.66 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356788899999999999999998755
No 433
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.79 E-value=0.031 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l 243 (490)
.+.|.|++|+|||||++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 434
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.77 E-value=0.038 Score=54.46 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 356788899999999999999998765
No 435
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.75 E-value=0.037 Score=54.41 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 356788899999999999999998765
No 436
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.75 E-value=0.031 Score=52.18 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..+.|.||.|+|||||++.++..+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566888999999999999999987653
No 437
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.74 E-value=0.038 Score=54.72 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 356788899999999999999998765
No 438
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.73 E-value=0.037 Score=46.85 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~ 242 (490)
.++|.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999865
No 439
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.71 E-value=0.037 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.||.|+|||||++.++..+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56788899999999999999998765
No 440
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.069 Score=58.40 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=21.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+.++|.||||||||+++..++..+.
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~ 400 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLS 400 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999888877664
No 441
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.70 E-value=0.066 Score=52.43 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEE
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v 254 (490)
..+..+.|.|+.|+|||||++.++.... ++..++.+
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~ 104 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLAL 104 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEE
Confidence 5678999999999999999999999864 34434444
No 442
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.69 E-value=0.023 Score=49.68 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=22.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+.|+|++|+|||||++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999998875
No 443
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.67 E-value=0.39 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=19.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
++.+++.+|.|+|||..+-..+-+.
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHH
Confidence 3579999999999998866655443
No 444
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.67 E-value=0.13 Score=49.25 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhccCCCCeEEEECC-CCCcHHHHHHHHHHHhhhcCCceEEEEeccC
Q psy200 201 VQLEGIRQFLLGHVNNETSGSMYISGP-PGTGKSASLNLLVSRAEIKDAFKTIYINCNS 258 (490)
Q Consensus 201 ~~~~~l~~~L~~~~~~~~~~~ill~Gp-pGtGKTtla~~l~~~l~~~~~~~~~~v~~~~ 258 (490)
+.+..|+..|.........+.|+|+|. +|+||||++..++..+.. .+.+++.+++..
T Consensus 86 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~ 143 (299)
T 3cio_A 86 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADL 143 (299)
T ss_dssp HHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEECCT
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 556666666654434456678888886 799999999999998863 356778887654
No 445
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.66 E-value=0.035 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+.|.||.|+|||||++.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998763
No 446
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.64 E-value=0.04 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456788899999999999999998765
No 447
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.54 E-value=0.45 Score=50.38 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=60.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCe
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKS 299 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~ 299 (490)
+..+|+|++|.|||+++-.++..+. .. ++|.++...+...++......+ .+ ...+++. ......
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~--~~---~~vtAP~~~a~~~l~~~~~~~i--~~--~~Pd~~~-------~~~~~~ 256 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIA--GR---AIVTAPAKASTDVLAQFAGEKF--RF--IAPDALL-------ASDEQA 256 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSS--SC---EEEECSSCCSCHHHHHHHGGGC--CB--CCHHHHH-------HSCCCC
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHH--hC---cEEECCCHHHHHHHHHHhhCCe--EE--eCchhhh-------hCcccC
Confidence 5679999999999999999999875 22 4777777766665554432221 11 1222211 222234
Q ss_pred EEEEEecCccccccCHHHHHHhHhCCCCCCCcEEEEEecC
Q psy200 300 ILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339 (490)
Q Consensus 300 ~vI~IDEid~l~~~~~~~L~~l~~~~~~~~~~vilI~~tn 339 (490)
-+|||||+=.+.- ..|..++. ...++++..+.+
T Consensus 257 dlliVDEAAaIp~---pll~~ll~----~~~~v~~~tTv~ 289 (671)
T 2zpa_A 257 DWLVVDEAAAIPA---PLLHQLVS----RFPRTLLTTTVQ 289 (671)
T ss_dssp SEEEEETGGGSCH---HHHHHHHT----TSSEEEEEEEBS
T ss_pred CEEEEEchhcCCH---HHHHHHHh----hCCeEEEEecCC
Confidence 5999999999864 45555554 223566655555
No 448
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.53 E-value=0.08 Score=53.58 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=30.0
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEec
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~ 256 (490)
-..+..+.|.|+.|+|||||++.++.... .+...+.++.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G 192 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIG 192 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEES
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEec
Confidence 35678899999999999999999999864 3344455543
No 449
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.53 E-value=0.011 Score=65.39 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLV 240 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~ 240 (490)
.+..++|+||.|+||||+++.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999984
No 450
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.52 E-value=0.041 Score=46.88 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
-.++|.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36889999999999999999875
No 451
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.51 E-value=0.034 Score=54.51 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 456788899999999999999998765
No 452
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.50 E-value=0.1 Score=51.05 Aligned_cols=44 Identities=11% Similarity=0.311 Sum_probs=34.6
Q ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHHhhh-cCCceEEEEeccCC
Q psy200 216 NETSGSMYISGPPGTGKSASLNLLVSRAEI-KDAFKTIYINCNSV 259 (490)
Q Consensus 216 ~~~~~~ill~GppGtGKTtla~~l~~~l~~-~~~~~~~~v~~~~~ 259 (490)
....+.+++.|.+|+||||++..++..+.. ..+.+++.+++-..
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 455689999999999999999999988862 44567777777543
No 453
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.50 E-value=0.041 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+.|.||.|+|||||++.++..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 56788899999999999999998765
No 454
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.45 E-value=0.041 Score=47.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
..++|.|++|+|||||++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999753
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.43 E-value=0.049 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=24.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|.|.|++|+||||+++.+++.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467889999999999999999999986
No 456
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.42 E-value=0.035 Score=48.71 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~ 241 (490)
.++|.|++|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999876
No 457
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.40 E-value=0.045 Score=46.44 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~ 242 (490)
.++|.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998764
No 458
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.38 E-value=0.1 Score=49.99 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhccCCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCC
Q psy200 204 EGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR 260 (490)
Q Consensus 204 ~~l~~~L~~~~~~~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~ 260 (490)
..+...+.........+.|.|+|-+|+||||++-.++..+... +.+++.+++....
T Consensus 26 ~~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~~ 81 (307)
T 3end_A 26 GSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCDPKH 81 (307)
T ss_dssp --------------CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEESSSC
T ss_pred chhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 3455555554444567788888999999999999999988643 5577777776543
No 459
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.38 E-value=0.044 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
.+..++|.|++|+||||++..+.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4678999999999999999999874
No 460
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=93.38 E-value=0.13 Score=55.07 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHh
Q psy200 218 TSGSMYISGPPGTGKSASL-NLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL 273 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla-~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l 273 (490)
.++.+++.|+.|+|||..+ -.+++.+.. ....++++. + ...+..++...+
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lila-P----Tr~La~Q~~~~l 290 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLA-P----TRVVAAEMAEAL 290 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEE-S----SHHHHHHHHHHT
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEc-c----HHHHHHHHHHHH
Confidence 4789999999999999973 555554332 334455553 1 234555555555
No 461
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.33 E-value=0.056 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
+..+.|.|++|+|||||++.++ .+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4578899999999999999998 54
No 462
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.32 E-value=0.049 Score=46.31 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
.+..+|+||.|+|||+++.++.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999997655
No 463
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.30 E-value=0.064 Score=56.61 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=28.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
.+..|+|+|.+|+||||+++.+++.+.. .++.++.++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~-~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEec
Confidence 4567899999999999999999998731 235556654
No 464
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.28 E-value=0.043 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l 243 (490)
.++|.|++|+|||+|++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998653
No 465
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.26 E-value=0.046 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
-.++|.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 36889999999999999998754
No 466
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.21 E-value=0.05 Score=46.93 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
-.++|.|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999764
No 467
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.21 E-value=0.039 Score=53.04 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.8
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|+||.|+|||||++.++..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467789999999999999999998765
No 468
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.21 E-value=0.05 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
..++|.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999865
No 469
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.20 E-value=0.05 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy200 221 SMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~l 243 (490)
.++|.|++|+|||+|++.+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998653
No 470
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.19 E-value=0.062 Score=52.45 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.|++|+|||||++.++..+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4667888999999999999999988764
No 471
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.17 E-value=0.054 Score=56.19 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
....|+|+|.||+||||+++.+++.++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345789999999999999999999875
No 472
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.16 E-value=0.042 Score=52.42 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=24.0
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
..+..+.|.||.|+|||||++.++..+.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3667889999999999999999987653
No 473
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.16 E-value=0.052 Score=46.41 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
-.++|.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36889999999999999999865
No 474
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.15 E-value=0.044 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
+..+.|.||.|+|||||++.++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6688899999999999999998654
No 475
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.15 E-value=0.052 Score=46.34 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Q psy200 220 GSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~l 243 (490)
-.++|.|++|+|||+|++.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998753
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.15 E-value=0.023 Score=53.35 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
.+..|+|.|+.|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999998873
No 477
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.14 E-value=0.28 Score=47.57 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~ 241 (490)
.|+|.|.+|+|||+|++.+..
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCS
T ss_pred eEEEECCCCccHHHHHHHHhC
Confidence 589999999999999998854
No 478
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.14 E-value=0.5 Score=50.62 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
++.++|.+|.|+|||..+-.++.+.
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~~~ 52 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICEHH 52 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHH
Confidence 4679999999999999887766543
No 479
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.11 E-value=0.31 Score=43.71 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
....|+|.|.+|+|||+|++.+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999765
No 480
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.07 E-value=0.073 Score=47.38 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=47.6
Q ss_pred eEEEE-CCCCCcHHHHHHHHHHHhhhcCCceEEEEeccCCCCHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCCe
Q psy200 221 SMYIS-GPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKS 299 (490)
Q Consensus 221 ~ill~-GppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~~l~~~~~~~s~~~~~~~l~~~l~~~~~~ 299 (490)
.+.|+ +.+|+||||++-.++..+.. .+.+++.+++....+...++..- .-...........+.+.+..... ..
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~-~g~~vlliD~D~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~---~y 76 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSR-SGYNIAVVDTDPQMSLTNWSKAG--KAAFDVFTAASEKDVYGIRKDLA---DY 76 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHTTS--CCSSEEEECCSHHHHHTHHHHTT---TS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEECCCCCCHHHHHhcC--CCCCcEEecCcHHHHHHHHHhcC---CC
Confidence 44455 77899999999999999874 45688888876544433332200 00000000112444444444322 24
Q ss_pred EEEEEecCccc
Q psy200 300 ILLILDEIDAL 310 (490)
Q Consensus 300 ~vI~IDEid~l 310 (490)
-+||||=-..+
T Consensus 77 D~viiD~~~~~ 87 (206)
T 4dzz_A 77 DFAIVDGAGSL 87 (206)
T ss_dssp SEEEEECCSSS
T ss_pred CEEEEECCCCC
Confidence 48999976665
No 481
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.06 E-value=0.2 Score=47.54 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEC-CCCCcHHHHHHHHHHHhhhcCCceEEEEeccCC
Q psy200 200 EVQLEGIRQFLLGHVNNETSGSMYISG-PPGTGKSASLNLLVSRAEIKDAFKTIYINCNSV 259 (490)
Q Consensus 200 e~~~~~l~~~L~~~~~~~~~~~ill~G-ppGtGKTtla~~l~~~l~~~~~~~~~~v~~~~~ 259 (490)
.+.+..|+..|.........+.|+|+| -+|+||||++-.++..+.. .+.+++.+++..-
T Consensus 73 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~~ 132 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQ-TNKRVLLIDCDMR 132 (286)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHT-TTCCEEEEECCTT
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCCEEEEeccCC
Confidence 466677777776544445567777666 5799999999999998863 3567888887654
No 482
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.05 E-value=0.49 Score=49.59 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.4
Q ss_pred CCCeEEEECCCCCcHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASL 236 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla 236 (490)
.++.+++.+|.|+|||...
T Consensus 59 ~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHH
Confidence 4678999999999999853
No 483
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.04 E-value=0.02 Score=64.25 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.7
Q ss_pred CCeEEEECCCCCcHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLL 239 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l 239 (490)
+..++|+||.|+||||+++.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 578999999999999999998
No 484
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.03 E-value=0.035 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.4
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356788899999999999999998754
No 485
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.02 E-value=0.055 Score=46.77 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
...++|.|++|+|||+|++.+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4578899999999999999997653
No 486
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.02 E-value=0.055 Score=46.02 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~ 242 (490)
.++|.|.+|+|||+|++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 487
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.01 E-value=0.068 Score=46.09 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
....|+|.|++|+|||+|++.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999763
No 488
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.99 E-value=0.082 Score=48.30 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=23.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
...|.|.|++|+|||++++.|++.++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999999986
No 489
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.96 E-value=0.062 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l 243 (490)
+..+.|.|++|+|||||++.++...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4578899999999999999997643
No 490
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.95 E-value=0.051 Score=46.37 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~ 242 (490)
.++|.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999754
No 491
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.94 E-value=0.054 Score=53.89 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRA 243 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l 243 (490)
..+..+.|.||.|+|||||++.++..+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 492
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=92.93 E-value=0.14 Score=54.46 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=17.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLL 239 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l 239 (490)
..+.+++.|+.|+|||+.+-..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ 252 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAA 252 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH
T ss_pred cCCeEEEEeCCchhHHHHHHHH
Confidence 4567999999999999765543
No 493
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.92 E-value=0.056 Score=47.69 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=20.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Q psy200 218 TSGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 218 ~~~~ill~GppGtGKTtla~~l~~~ 242 (490)
....++|.|++|+|||+|++.+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999863
No 494
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.056 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~~ 242 (490)
.++|.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999763
No 495
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.89 E-value=0.059 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
-.++|.|.+|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36889999999999999999864
No 496
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.87 E-value=0.13 Score=50.32 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhh
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSRAE 244 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~l~ 244 (490)
...+.|+|+||+|||||++.+...+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 56788999999999999999998654
No 497
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.83 E-value=0.089 Score=54.86 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=28.7
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhhhcCCceEEEEe
Q psy200 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYIN 255 (490)
Q Consensus 217 ~~~~~ill~GppGtGKTtla~~l~~~l~~~~~~~~~~v~ 255 (490)
..+..++|+|.+|+||||+++.+++.+... +..+.+++
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~-G~~~~~ld 407 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQAR-GRKVTLLD 407 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhc-CCeEEEEC
Confidence 345678899999999999999999987532 23455554
No 498
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.83 E-value=0.053 Score=46.99 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy200 219 SGSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 219 ~~~ill~GppGtGKTtla~~l~~~ 242 (490)
+..++|.|++|+|||||++.+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446889999999999999999764
No 499
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.83 E-value=0.057 Score=46.14 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy200 221 SMYISGPPGTGKSASLNLLVS 241 (490)
Q Consensus 221 ~ill~GppGtGKTtla~~l~~ 241 (490)
.++|.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 500
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.79 E-value=0.06 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy200 220 GSMYISGPPGTGKSASLNLLVSR 242 (490)
Q Consensus 220 ~~ill~GppGtGKTtla~~l~~~ 242 (490)
-.|+|.|++|+|||+|++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999864
Done!