RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy200
(490 letters)
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 192 bits (489), Expect = 9e-57
Identities = 62/307 (20%), Positives = 117/307 (38%), Gaps = 22/307 (7%)
Query: 195 ELPGREVQLEGIRQFLLGHVNN--ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTI 252
LP RE QL+ + L + N + G PGTGK+ +L L + K + +
Sbjct: 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFV 77
Query: 253 YINCNSVRNAASVYETIVNELKLKPG--GKSERHQLGAILKYFDTKHKSILLILDEIDAL 310
YIN RN ++ I L + G S L ++++ + + L+LD+ L
Sbjct: 78 YINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137
Query: 311 ESRKQTILYTIF-EWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSR 369
+ + E + ++ LV V + + + + P + + ++ F+PY++
Sbjct: 138 APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTK 195
Query: 370 EQILEIISQKLKQTDKFNMFNASALQLLAGKVAAV------SGDIRKAIDITNHLIDLTY 423
+QI +I+ + K ++ LQ++A A GD R AIDI
Sbjct: 196 DQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255
Query: 424 DNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNV 483
N ++ + + + PL +KL L +++ +
Sbjct: 256 QNGRK--HIA-------PEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHT 306
Query: 484 KDVTLGK 490
+T G
Sbjct: 307 PYITFGD 313
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 190 bits (484), Expect = 5e-56
Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 18/302 (5%)
Query: 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSR--AEIKDAFKTI 252
ELP RE Q+ I L E +++I G GTGK+A + ++S+ + FK +
Sbjct: 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV 80
Query: 253 YINCNSVRNAASVYETIVNELKLKPG--GKSERHQLGAILKYFDTKHKSILLILDEIDAL 310
YIN + V ++ L +K G S ++K ++++LDEIDA
Sbjct: 81 YINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140
Query: 311 ESRK-QTILYTIFEWPS-IPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYS 368
+ ILY + S + SK+ +G+ N + D + PR+++ +L + F PY+
Sbjct: 141 VKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYN 198
Query: 369 REQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKE 428
E++ +I++++ + K + + ++L A A GD R+A+D+ ++ E
Sbjct: 199 AEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA-----E 253
Query: 429 NGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNVKDVTL 488
+ T + + V + + P KL L +++ + S N T
Sbjct: 254 RMKDTKVKEEYVYMAKEEIE----RDRVRDIILTLPFHSKLVLMAVVSISSEEN-VVSTT 308
Query: 489 GK 490
G
Sbjct: 309 GA 310
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 177 bits (449), Expect = 5e-51
Identities = 68/306 (22%), Positives = 126/306 (41%), Gaps = 24/306 (7%)
Query: 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSR-----AEIKDAF 249
LP RE +L + + L + E + + G GTGK+A L++ R + +
Sbjct: 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLV 79
Query: 250 KTIYINCNSVRNAASVYETIVNELKL--KPGGKSERHQLGAILKYFDTKHKSILLILDEI 307
K IY+N V I + + G S ++K +++LDEI
Sbjct: 80 KPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEI 139
Query: 308 DALESRK--QTILYTIFEWPSIPGSK--LVLVGVANALDLTDRMLPRLQANVTLQPTLMN 363
D L R Q +LY I G + + LVG+ N+L + + PR+++ +L +
Sbjct: 140 DFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELV 197
Query: 364 FAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTY 423
F PY+ Q+ +I+ + ++ + + + L A A GD R+A+D+ ++
Sbjct: 198 FPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA- 256
Query: 424 DNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNV 483
E + + V + + S+ + PL KL L S+++L+
Sbjct: 257 ----ERRREERVRREHVYSARAEIERD----RVSEVVRTLPLHAKLVLLSIMMLED--GG 306
Query: 484 KDVTLG 489
+ + G
Sbjct: 307 RPASTG 312
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 166 bits (422), Expect = 4e-47
Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 29/303 (9%)
Query: 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSR-------AEIKD 247
E+P RE L + V NE S G GTGK+ + + E
Sbjct: 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYK 80
Query: 248 AFKTIYINCNSVRNAA-SVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKS-ILLILD 305
K Y+NC V +V ++ +L K + I K + ++ LD
Sbjct: 81 DVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLD 140
Query: 306 EIDALESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMN 363
E+D L R+ +LY + + + ++ ++N +++ D M PR+ ++ +
Sbjct: 141 EVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSS---LGPSVI 193
Query: 364 FAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTY 423
F PY EQ+ I+S+ + ++ L +A A GD RKA+++ L
Sbjct: 194 FKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL-- 251
Query: 424 DNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLALASLLLLKSRPNV 483
G + + + + + P KLAL SL+ + +
Sbjct: 252 --ASGGGIIR-------KEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSA 302
Query: 484 KDV 486
+
Sbjct: 303 HKM 305
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 162 bits (410), Expect = 4e-46
Identities = 43/268 (16%), Positives = 84/268 (31%), Gaps = 44/268 (16%)
Query: 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIK------DA 248
L + I + + + + YI+ + K +N ++
Sbjct: 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPI 80
Query: 249 FKTIYINCNSVRNAASVYETIVNELKLK--PGGKSERHQLGAILKYFDTKHKSILLILDE 306
F I+I+ + ++YE I + + G S I K + L+++
Sbjct: 81 FDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQN 140
Query: 307 IDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAP 366
+ L + IL +W S SKL ++ V + + + T +
Sbjct: 141 PENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSL-KAHFTEIKLNK 197
Query: 367 YSREQILEIISQKLKQTDKF---------------------------------NMFNASA 393
+ ++ ++I +LK K + N
Sbjct: 198 VDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKI 257
Query: 394 LQLLAGKVAAVSGDIRKAIDITNHLIDL 421
QL+A VA VSG KA I +++
Sbjct: 258 TQLIAKNVANVSGSTEKAFKICEAAVEI 285
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 147 bits (372), Expect = 8e-40
Identities = 48/309 (15%), Positives = 108/309 (34%), Gaps = 31/309 (10%)
Query: 195 ELPGREVQLEGIRQFLLGHVNNETSGS-----MYISGPPGTGKSASLNLLVSR-----AE 244
EL R + E + + L + + S G G GK+ V R A+
Sbjct: 23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAK 82
Query: 245 IKDAFKTIYINCNSVRNAASVYETIVNEL--KLKPGGKSERHQLGAILKYFDTKHKSILL 302
K Y+N + N ++ IV + ++ G L A++ ++ +L+
Sbjct: 83 EGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLV 142
Query: 303 ILDEIDALESRKQT---ILYTIFE-----WPSIPGSKLVLVGVANALDLTDRMLPRLQAN 354
ILDE ++ S + LYT+ +++ + VA+ + M ++
Sbjct: 143 ILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQV 202
Query: 355 VTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVA---AVSGDIRKA 411
+ ++ Y ++ I+ Q+ + + ++ L+L++ G R+A
Sbjct: 203 ESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRA 262
Query: 412 IDITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLAL 471
I ++ E + V +S + S+ + ++ + + + L
Sbjct: 263 IVALKMACEMA-----EAMGRDSLSEDLVRKAVSENE--AASIQTHE-LEALSIHELIIL 314
Query: 472 ASLLLLKSR 480
+
Sbjct: 315 RLIAEATLG 323
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 83.4 bits (205), Expect = 5e-17
Identities = 71/448 (15%), Positives = 146/448 (32%), Gaps = 108/448 (24%)
Query: 113 DATSTSDAVRSVSGSRSSAKADCLRPLSPIKN-------IILDK-KSPFKAFI----RDD 160
D D +S+ S + D + + +L K + + F+ R +
Sbjct: 34 DCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 161 EDLIKRSPAKLC---SPRKLLFSEDKPK----VEEKAKDSCELPGREVQLEGIRQFLLGH 213
+ S ++ E + + + AK + R +RQ LL
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALL-- 145
Query: 214 VNNETSGSMYIS--GPPGTGKSASLNLLVSRA---EIKDAFKTIYINCNSVRNAASVYET 268
E + + G G+GK+ + L V + + K FK ++N + + +V E
Sbjct: 146 ---ELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 269 IVN-ELKLKPGGKSERHQLGAI----------LKYF--DTKHKSILLILDE------IDA 309
+ ++ P S I L+ +++ LL+L +A
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 310 LESRKQTILYT----IFEWPSIPGSKLVLVG--------------VANALDLTDRMLPRL 351
+ +L T + ++ S + + + + LD + LPR
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR- 320
Query: 352 QANVTLQPTLMN-FAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRK 410
+ +T P ++ A R+ + + K DK S+L +L + RK
Sbjct: 321 EV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------PAEYRK 373
Query: 411 -----AI-----DITNHLIDLTYDNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDE 460
++ I L+ L + +V ++ +V+ V++ SL K
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKS---------DVMVVVNK--LHKYSL-VEKQP 421
Query: 461 DSFPLQQKLALASLLLLKSRPNVKDVTL 488
+++ S+ L + L
Sbjct: 422 KES----TISIPSIYLELKVKLENEYAL 445
Score = 59.5 bits (143), Expect = 2e-09
Identities = 84/476 (17%), Positives = 150/476 (31%), Gaps = 155/476 (32%)
Query: 61 LHLGSPRTPSSLLRSL-KLDSPKRKIDTALEFASPKRVFKDADATSSGAASA-VDATSTS 118
L+L + +P ++L L KL +ID + + S +++ + S
Sbjct: 187 LNLKNCNSPETVLEMLQKL---LYQID------------PNWTSRSDHSSNIKLRIHSIQ 231
Query: 119 DAVRSVSGSRSSAKADCLRPLSPIKNIILD---KKSPFKAF--------------IRDDE 161
+R + S+ +CL ++L + AF + D
Sbjct: 232 AELRRLLKSKP--YENCL--------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 162 DLIKRSPAKLCSPRKLLFSEDKPK------VEEKAKDSCELPGREVQL----------EG 205
+ L + + D+ K ++ + +D LP REV E
Sbjct: 282 SAATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRPQD---LP-REVLTTNPRRLSIIAES 336
Query: 206 IRQFL-----LGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR 260
IR L HVN + ++ I +SLN+L AE + F + + S
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTI-I--------ESSLNVL-EPAEYRKMFDRLSVFPPSAH 386
Query: 261 NAASVY------------ETIVNELK----LKPGGKSERHQLGAILKYFDTKHKSILLIL 304
+ +VN+L ++ K + +I Y + K K L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVK-----L 439
Query: 305 DEIDALESRKQTIL--YTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLM 362
+ AL I+ Y I + D D + P L
Sbjct: 440 ENEYALHRS---IVDHYNIPK----------------TFDSDDLIPPYLDQ--------- 471
Query: 363 NFAPYSREQILEIIS---QKLKQTDKFNMFNASALQL--LAGKVAAVSGDIRKAIDITNH 417
Y I + ++ ++ +F L L K+ S + I N
Sbjct: 472 ----Y----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 418 LIDL-TY-DNVKENGEVTGIGLKEVLGVISSVYCTSQSLHCSKDEDSFPLQQKLAL 471
L L Y + +N + +L + + ++L CSK D L + +AL
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKI---EENLICSKYTD---LLR-IAL 572
Score = 49.1 bits (116), Expect = 3e-06
Identities = 44/249 (17%), Positives = 71/249 (28%), Gaps = 64/249 (25%)
Query: 284 HQLGAILKYFDTKH-----KSILL--ILDEIDALESRKQTILYTIFEWPSIPGSKLVLVG 336
A + FD K KSIL +D I + +F ++V
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLFWTLLSKQEEMVQKF 82
Query: 337 VANALD-----LTDRMLPRLQANVTLQPTLMN----------------FAPY--SREQIL 373
V L L + QP++M FA Y SR Q
Sbjct: 83 VEEVLRINYKFLMSPI-----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 374 EIISQKLKQTDK------FNMFNASALQLLAGK---VAAVSGDIRKAIDITNHLIDLTYD 424
+ Q L + + + GK V + + + L
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGS-------GKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 425 NVKENGEVTGIGLKEVLGVISSVYC--------TSQSLHCSKDEDSFPLQQKLALASLLL 476
N V + L+++L I + +H + E L+ K LL+
Sbjct: 191 NCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 477 LKSRPNVKD 485
L NV++
Sbjct: 250 LL---NVQN 255
Score = 32.9 bits (74), Expect = 0.29
Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 64/230 (27%)
Query: 2 VLHPNEPITT----------VEEVPRSPRVTRSCSQLPQTPKSQRPNTCRTPTSHQPITP 51
V P+ I T ++ V + K + +T P+ + +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVM--VVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 52 KTPSTLLSDLH---LGSPRTPSSLLRSLKLDSPK------------RKIDTALEFASPKR 96
K + LH + P + + + I+ +
Sbjct: 438 KLEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 97 VFKD---------ADATSSGAASAVDATSTSDAVRSVSGSRSSAKADCLRPLSPIKNIIL 147
VF D D+T+ A+ ++ + L+ L K I
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSI--------------------LNTLQQLKFYKPYIC 535
Query: 148 DKKSPFKAFIRDDEDLIKRSPAKL-CSP-----RKLLFSEDKPKVEEKAK 191
D ++ + D + + L CS R L +ED+ EE K
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 9e-11
Identities = 45/287 (15%), Positives = 87/287 (30%), Gaps = 96/287 (33%)
Query: 220 GSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA--SVYETIVNELKLK- 276
GS G G +L + +D + N ++ S+ + ++N
Sbjct: 1625 GSQE----QGMGM----DLYKTSKAAQDVWNRA---DNHFKDTYGFSILDIVINNPVNLT 1673
Query: 277 -----PGGKSERHQLGAIL--KYFDTKHKSILLILDEIDALESR----------KQT--- 316
GK R A++ D K K+ I EI+ + T
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKT-EKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 317 ---IL---YTIFE----WPSIPGSKLV----------LVGVANALDLTD-------R--- 346
+ FE IP L +A+ + + R
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT 1792
Query: 347 ---MLPRLQAN------VTLQPTLMNFAPYSREQILEIISQKLKQTDKF----NMFNASA 393
+PR + + + P + A +S+E + ++ + K+T N +N
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVA-ASFSQEALQYVVERVGKRTGWLVEIVN-YNVEN 1850
Query: 394 LQL-LAGKVAAVSGDIRKAIDITNHL----IDL-------TYDNVKE 428
Q AG + A+ ++ N + ID+ + + V+
Sbjct: 1851 QQYVAAGDLRALD----TVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 54.3 bits (130), Expect = 8e-08
Identities = 68/392 (17%), Positives = 117/392 (29%), Gaps = 129/392 (32%)
Query: 133 ADCLRPLS----PIKNIILDKKSPFKAFIRDDEDLIKRSPAKLCSPRKLLFSEDKPKVEE 188
A RPL+ +++++L + F + E K P P + ++D+P
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE----PTEGFAADDEPT--- 55
Query: 189 KAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSAS--LNLLVSRAEIK 246
EL G+ FL G+V++ P LNL +
Sbjct: 56 ---TPAELVGK---------FL-GYVSSLVE--------PSKVGQFDQVLNLCL------ 88
Query: 247 DAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILK-YF----------DT 295
F+ Y+ N + + +L + + + ++K Y D
Sbjct: 89 TEFENCYLEGNDI-------HALAAKLLQENDTTLVKTK--ELIKNYITARIMAKRPFDK 139
Query: 296 KHKSILLILDEIDALESRKQTILYTIFEWPSIPG------------SKL-----VLVGVA 338
K S L A+ L IF G L VLVG
Sbjct: 140 KSNSALF-----RAVGE-GNAQLVAIF------GGQGNTDDYFEELRDLYQTYHVLVG-- 185
Query: 339 NALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLA 398
DL L L T ++ Q L I+ L+ L
Sbjct: 186 ---DLIKFSAETLS---ELIRTTLDAEKV-FTQGLNILEW-LENPSN-----TPDKDYLL 232
Query: 399 GKVAAVSGDIRKAI--------DITNHLIDLTYDNVKEN--GEVTGIGLKEVLGVISSVY 448
+S I +T L+ T ++ G TG G++++V
Sbjct: 233 S--IPISC---PLIGVIQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQ----GLVTAV- 281
Query: 449 CTSQSLHCSKDEDSFPLQQKLALASLLLLKSR 480
+++ +SF + + A+ L + R
Sbjct: 282 AIAET----DSWESFFVSVRKAITVLFFIGVR 309
Score = 40.4 bits (94), Expect = 0.001
Identities = 58/256 (22%), Positives = 86/256 (33%), Gaps = 90/256 (35%)
Query: 40 CRTPTSHQ--PITPKTPSTLLSDLHLGSPRTPSSLL--RSLKLDSPKRKID-TALEFASP 94
R ++ P T PS L L PS +L +L + + ++ T +
Sbjct: 308 VR---CYEAYPNTSLPPSILEDSLENNEG-VPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 95 KRVFKDADATSSGAASAVDATSTSDAVRSVSGSRSSAKADCLRPLSPIKNIILDKKSPFK 154
K+V + +GA + V VSG S L L N+ L K K
Sbjct: 364 KQVEI---SLVNGAKNLV-----------VSGPPQS-----LYGL----NLTLRKA---K 397
Query: 155 AFIRDDEDLIKRSPAKLCSPRKLLFS-----------------------ED--KPKVEEK 189
A D+ R P S RKL FS +D K V
Sbjct: 398 APSGLDQS---RIPF---SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 190 AKDSCELP------GREVQ-LEG------IRQFLLGHVNNETSGSMYIS-----GPPGTG 231
AKD ++P G +++ L G + + V ET+ + GP G
Sbjct: 452 AKD-IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP---G 507
Query: 232 KSASLNLLVSRAEIKD 247
++ L +L R KD
Sbjct: 508 GASGLGVLTHR--NKD 521
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 53.7 bits (129), Expect = 7e-08
Identities = 37/231 (16%), Positives = 77/231 (33%), Gaps = 44/231 (19%)
Query: 222 MYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKS 281
+ GPPG GK+ + LV++ E+ + + N + VR+ + + N L S
Sbjct: 80 AMLYGPPGIGKT-TAAHLVAQ-ELG--YDILEQNASDVRSKTLLNAGVKNAL----DNMS 131
Query: 282 ERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANAL 341
+ + K ++I+DE+D + + + + + + L+ + N
Sbjct: 132 VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQ--FCRKTSTPLILICN-- 187
Query: 342 DLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQ-----KLKQTDKFNMFNASALQL 396
+ + + F I + K K +
Sbjct: 188 ERNLPKMRPFDRVC----LDIQFRRPDANSIKSRLMTIAIREKFKLDPN-------VIDR 236
Query: 397 LAGKVAAVSGDIRKAIDITNHL-------IDLTYDNVKENGEVTGIGLKEV 440
L + GDIR+ I N L + ++N+ E++ K +
Sbjct: 237 L---IQTTRGDIRQVI---NLLSTISTTTKTINHENIN---EISKAWEKNI 278
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 43.3 bits (102), Expect = 1e-04
Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 21/130 (16%)
Query: 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256
R I F+ + +Y+ G G GKS L + K T ++
Sbjct: 131 ASRMEAFSAILDFV-EQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189
Query: 257 NSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDAL---ESR 313
S ++K S + ++ A+ +LILD+I A
Sbjct: 190 PS----------FAIDVKNAISNGSVKEEIDAVKNV-P------VLILDDIGAEQATSWV 232
Query: 314 KQTILYTIFE 323
+ +L I +
Sbjct: 233 RDEVLQVILQ 242
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 42.4 bits (100), Expect = 1e-04
Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 21/130 (16%)
Query: 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC 256
GR + +F+ + + +Y+ G G GK+ L + + K ++ +
Sbjct: 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-AKRNVSSLIVY- 89
Query: 257 NSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDAL---ESR 313
+ ELK ++ +L I K +L+LD++ A
Sbjct: 90 ---------VPELFRELKHSLQDQTMNEKLDYIKKV-P------VLMLDDLGAEAMSSWV 133
Query: 314 KQTILYTIFE 323
+ + I +
Sbjct: 134 RDDVFGPILQ 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 41.6 bits (98), Expect = 2e-04
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 26/115 (22%)
Query: 197 PGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKS----ASLNLLVSRAEIKDAFKTI 252
+ L IR F+ + N E + G PG GK+ A+L + + I +
Sbjct: 17 VSQNRALLTIRVFV-HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI----RGY 71
Query: 253 YINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEI 307
+ + ++ LK + L +L +L+LD++
Sbjct: 72 FFDTKD----------LIFRLKHLMDEGKDTKFLKTVLNS-P------VLVLDDL 109
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 42.5 bits (100), Expect = 3e-04
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 48/201 (23%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSER 283
+ GPPGTGK+ L+ + IN E+ K G+SE
Sbjct: 243 LYGPPGTGKT----LIARAVANETGAFFFLING--------------PEIMSKLAGESES 284
Query: 284 HQLGAILKYFDTKHKSILLILDEIDAL-----------ESRKQTILYTIFEWPSIPGSKL 332
+ L + + +I+ I DE+DA+ E R + L T+ + + +
Sbjct: 285 N-LRKAFEEAEKNAPAIIFI-DELDAIAPKREKTHGEVERRIVSQLLTLMD-GLKQRAHV 341
Query: 333 VLVGVANALDLTD---RMLPRLQANVTLQ-PTLMNFAPYSREQILEIISQKLKQTDKFNM 388
+++ N + D R R V + P R +IL+I ++ +K D +
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPD-----ATGRLEILQIHTKNMKLADDVD- 395
Query: 389 FNASALQLLAGKVAA-VSGDI 408
L+ +A + V D+
Sbjct: 396 -----LEQVANETHGHVGADL 411
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 38.9 bits (91), Expect = 0.003
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 222 MYISGPPGTGKSASLNLLVSRAEIKDAFK--TIYINCNSVRNAASVYETIVNELKLKPGG 279
+ SGPPGTGK+ + + ++R + ++ I +N + R V I + P
Sbjct: 41 LLFSGPPGTGKT-ATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP-- 97
Query: 280 KSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFE 323
K ++ LDE DAL + Q L E
Sbjct: 98 ------------IGGAPFK--IIFLDEADALTADAQAALRRTME 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 37.6 bits (88), Expect = 0.005
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 222 MYISGPPGTGKSASLNLLVSRAEIKDAFK--TIYINCNSVRNAASVYETIVNELKLKPGG 279
+ SGPPGTGK+ + + ++R + ++ I +N + R V I + P
Sbjct: 41 LLFSGPPGTGKT-ATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP-- 97
Query: 280 KSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTIL 318
K ++ LDE DAL + Q L
Sbjct: 98 ------------IGGAPFK--IIFLDEADALTADAQAAL 122
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 37.7 bits (88), Expect = 0.006
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 222 MYISGPPGTGKSASLNLLVSRAEIKDAFKT--IYINCNSVRNAASVYETIVNELKLKPGG 279
+ +GPPG GK+ + L ++R + ++ + +N + R + E + + KP
Sbjct: 49 LLFAGPPGVGKT-TAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKP-- 105
Query: 280 KSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFE 323
K ++ LDE DAL Q L E
Sbjct: 106 ------------IGGASFK--IIFLDEADALTQDAQQALRRTME 135
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 37.9 bits (88), Expect = 0.008
Identities = 38/255 (14%), Positives = 86/255 (33%), Gaps = 27/255 (10%)
Query: 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSA-SLNLLVSRAEIKDAFKTIYI-- 254
R+ + I+Q L N G + I G G GKS + + + ++ F
Sbjct: 128 TRKKLVHAIQQKL--WKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 185
Query: 255 ---NCNSVRNAASVYETIV----NELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEI 307
+ + + E + + + KH LLILD++
Sbjct: 186 SIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV 245
Query: 308 ------DALESRKQTILYT--IFEWPSIPGSKLVL-----VGVANALDLTDRMLPRLQAN 354
A +++ Q +L T S+ G K V+ +G L++ + + +
Sbjct: 246 WDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED 305
Query: 355 VTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414
+ + + ++ +I L+ D N + QL + + +
Sbjct: 306 LPAEAHSIIKECKGSPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFKRIRKSSSYDYEA 363
Query: 415 TNHLIDLTYDNVKEN 429
+ + ++ + ++E+
Sbjct: 364 LDEAMSISVEMLRED 378
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 36.7 bits (85), Expect = 0.013
Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 28/228 (12%)
Query: 222 MYISGPPGTGKSASLNLLVSRAEIKDAFK--TIYINCNSVRNAASVYETIVNELKLKPGG 279
M GPPGTGK++++ L D K + +N + R + V E + N +L
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSK 120
Query: 280 KSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVAN 339
S+ Y +K ++ILDE D++ + Q+ L E S ++ L + N
Sbjct: 121 PSKHDLEN----YPCPPYK--IIILDEADSMTADAQSALRRTMETYS-GVTRFCL--ICN 171
Query: 340 ALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAG 399
R++ L + + F ++ + +Q + + L+ +
Sbjct: 172 Y---VTRIIDPLASQC----SKFRFKALDASNAIDRLRFISEQ-ENVK-CDDGVLERI-- 220
Query: 400 KVAAVSGDIRKAIDITNHL--IDLTYDNVKENGEVTGIGLKEVLGVIS 445
+ +GD+R+ I L + + +T ++E+ GV+
Sbjct: 221 -LDISAGDLRRGI---TLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 35.7 bits (82), Expect = 0.026
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAF 249
T+ + I PG GKS + +L+ R ++ +
Sbjct: 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSR 65
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 36.2 bits (84), Expect = 0.027
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 29/146 (19%)
Query: 302 LILDEID------------ALESRKQTI--LYTIFEWPSIPG----SKLVLVGVANALD- 342
L +DEI A++ +K I + + VLV N
Sbjct: 205 LFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264
Query: 343 ------LTDRM-LPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQ 395
L R+ + T M +R ++++ ++Q++K+ K F A++
Sbjct: 265 DKMHPALRSRIRGYGYEV---YMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVE 321
Query: 396 LLAGKVAAVSGDIRKAIDITNHLIDL 421
+ + +G L +
Sbjct: 322 EIVREAQKRAGRKGHLTLRLRDLGGI 347
Score = 29.7 bits (67), Expect = 2.4
Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 8/149 (5%)
Query: 159 DDEDLIKRSPAKLCSPRKLLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNET 218
D+E + + + A L + EE + Q +
Sbjct: 3 DNEKINREALAPREYGESLELGIEFTTTEEIEVPEKLIDQVIGQEHAVEVIKTAANQKR- 61
Query: 219 SGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG 278
+ + G PGTGKS L ++ + + I + N + + G
Sbjct: 62 --HVLLIGEPGTGKS-MLGQAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPACQG 114
Query: 279 GKSERHQLGAILKYFDTKHKSILLILDEI 307
+ K ++ L +
Sbjct: 115 RRIVEKYREKAKSQESVKSSNMRLKSTVL 143
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 34.6 bits (79), Expect = 0.079
Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 21/178 (11%)
Query: 148 DKKSPFKAFIRDDEDLIKRSPAKLCSPRKLLFSEDKPKVEEKAKDSC--ELP---GREVQ 202
+ +S F+ D D P L P + + ++ K + RE
Sbjct: 78 NNQSHLADFLEDYIDFAINEPDLL-RPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIREYH 136
Query: 203 LEGIRQFLLGHVNNETSGSMYISGPPGTGKS--ASLNLLVSRAEIKDAFKT----IYINC 256
++ + + L + + S +++ G G+GKS AS L ++ + +
Sbjct: 137 VDRVIKKLDEMCDLD-SFFLFLHGRAGSGKSVIAS-QALSKSDQLIGINYDSIVWLKDSG 194
Query: 257 NSVRNAASVYETIVNELK-------LKPGGKSERHQLGAILKYFDTKHKSILLILDEI 307
+ ++ ++ I+ LK L ++ + L + D++
Sbjct: 195 TAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 252
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.24
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 16/42 (38%)
Query: 74 RSLKLDSPKRKIDTALEFASPKRVFKDADATSSGAASAVDAT 115
++LK K+ +L+ + D S A A+ AT
Sbjct: 20 QALK------KLQASLKLYAD-------D---SAPALAIKAT 45
Score = 28.4 bits (62), Expect = 3.0
Identities = 8/54 (14%), Positives = 13/54 (24%), Gaps = 28/54 (51%)
Query: 306 EIDALESR-KQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQ 358
+ L++ K LY S P L T++
Sbjct: 21 ALKKLQASLK---LYA-------DDSA-----------------PALAIKATME 47
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.9 bits (75), Expect = 0.27
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 226 GPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNEL--KLKPGGK 280
GPPG+GK+ +L + F+ + +N +S + +T + K P G+
Sbjct: 1311 GPPGSGKTMTLTSTLRA---FPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGE 1364
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 31.9 bits (72), Expect = 0.27
Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 224 ISGPPGTGKSASLNLLVSR----------AEIKD-------AFKTIYINCNSVRNAASVY 266
I+G PG GK+ + +V R E++D F+ I ++ +
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF 64
Query: 267 ETIVNELKLKPGGKSERHQLGAILK---YFDTKHKSILLILDEIDALESRKQTILYTIFE 323
+ + IL+ K + ++I+DEI +E + + +
Sbjct: 65 TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124
Query: 324 WPSIPGSKLVLVGVA---NALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKL 380
+ + +V + L + A + ++ T N R+ ILE I L
Sbjct: 125 --IMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVL-IELTPEN-----RDVILEDILSLL 176
Query: 381 KQ 382
++
Sbjct: 177 ER 178
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 32.4 bits (74), Expect = 0.33
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 19/104 (18%)
Query: 222 MYISGPPGTGKSASLNLLVSRAEIKDAFK--TIYINCNSVRNAASVYETIVNELKLKPGG 279
+ GPPGTGK++++ + ++R + + +N + R V I + +
Sbjct: 49 LLFYGPPGTGKTSTI-VALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQ-- 105
Query: 280 KSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFE 323
F K L+ILDE DA+ + Q L + E
Sbjct: 106 ------------IFSKGFK--LIILDEADAMTNAAQNALRRVIE 135
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 32.4 bits (74), Expect = 0.40
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 181 EDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLV 240
+ + E Q + Q + ++G PGTGKS + +
Sbjct: 173 DGAGNDDWAVPKKARKGLSEEQASVLDQLA-------GHRLVVLTGGPGTGKSTTTKAVA 225
Query: 241 SRAE 244
AE
Sbjct: 226 DLAE 229
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 32.1 bits (73), Expect = 0.48
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 30/90 (33%)
Query: 226 GPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVN--ELKLKPGGKSER 283
GPPGTGK+ L++RA V N + ++N E+ K G+SE
Sbjct: 245 GPPGTGKT-----LIARA---------------VANETGAFFFLINGPEIMSKLAGESES 284
Query: 284 HQLGAILKYFDTKHK---SILLILDEIDAL 310
+ K F+ K +I+ I DE+DA+
Sbjct: 285 ----NLRKAFEEAEKNAPAIIFI-DELDAI 309
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 31.6 bits (71), Expect = 0.53
Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 28/192 (14%)
Query: 201 VQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVR 260
+ +E RQ LG + + M +G PGTGK+ V+ + Y+ +
Sbjct: 50 LLVERARQ-KLGLAHETPTLHMSFTGNPGTGKT-----TVALKMAGLLHRLGYVRKGHLV 103
Query: 261 --NAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK---- 314
+ + K + +L I DE L
Sbjct: 104 SVTRDDLVGQYIGHTAPK------------TKEVLKRAMGGVLFI-DEAYYLYRPDNERD 150
Query: 315 --QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQI 372
Q + + + LV++ +A D + + + F YS E++
Sbjct: 151 YGQEAIEILLQVMENNRDDLVVI-LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEEL 209
Query: 373 LEIISQKLKQTD 384
EI L +
Sbjct: 210 FEIAGHMLDDQN 221
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.7 bits (72), Expect = 0.65
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 226 GPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETI 269
GPPG+GK+ +N + + + IN + + +
Sbjct: 1274 GPPGSGKTMIMNNALRN---SSLYDVVGINFSKDTTTEHILSAL 1314
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 30.4 bits (68), Expect = 0.87
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 224 ISGPPGTGKSAS-----LNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPG 278
I+G PG+GK+ N + + + + ++ N ++ + ET +L
Sbjct: 10 ITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTD 69
Query: 279 GKSERHQLGAILKYFDTKHKSILLILDE 306
+ H + +K + ++I+DE
Sbjct: 70 EQLSAHDMYEWIKKPENIGS--IVIVDE 95
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.8 bits (69), Expect = 0.89
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257
+ + Q L + + + + G PG+GKS L I + + T
Sbjct: 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI--INEKYHTFLSEHP 60
Query: 258 SVRNAASVYETIVNELKLKPGGKSERHQLGAILKY 292
+V + +VN + + +++ +++
Sbjct: 61 NVIEVNDRLKPMVNLVDSLKT--LQPNKVAEMIEN 93
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A*
1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A*
3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Length = 420
Score = 30.8 bits (70), Expect = 1.1
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
Query: 279 GKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKL--VLVG 336
G S QL I+K T + ++I + YT F++P I V
Sbjct: 259 GDSGVDQLVEIIKVLGTPTR------EQIREMNPN-----YTEFKFPQIKAHPWTKVFRP 307
Query: 337 VAN--ALDLTDRML 348
A+ L R+L
Sbjct: 308 RTPPEAIALCSRLL 321
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 30.5 bits (69), Expect = 1.1
Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 66/247 (26%)
Query: 188 EKAKDSCELPGREVQL---EGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE 244
+ D EL ++ + + LL GPP +GK+A L AE
Sbjct: 43 TRVLDDGELLVQQTKNSDRTPLVSVLL-------------EGPPHSGKTA---LAAKIAE 86
Query: 245 IKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSIL--L 302
+ +I S ET K + + K FD +KS L +
Sbjct: 87 ESNFP---FIKICSPDKMIGFSET----------AKCQA-----MKKIFDDAYKSQLSCV 128
Query: 303 ILDEIDAL---------ESRK--QTILYTIFEWPSIPGSKLVLVGVANALDLTD--RMLP 349
++D+I+ L S Q +L + + P G KL+++G + D+ ML
Sbjct: 129 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLN 187
Query: 350 RLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFN-ASALQLLAGKVAAVSGDI 408
+ + P + + EQ+LE L+ F + Q + GK + I
Sbjct: 188 AFSTTIHV-PNIA-----TGEQLLEA----LELLGNFKDKERTTIAQQVKGKKVWIG--I 235
Query: 409 RKAIDIT 415
+K + +
Sbjct: 236 KKLLMLI 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 30.0 bits (68), Expect = 1.5
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 220 GSMY-ISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254
G ++G PGTGK+ +L ++D IY+
Sbjct: 23 GFFIALTGEPGTGKT-IFSLHFIAKGLRDGDPCIYV 57
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 30.4 bits (68), Expect = 1.6
Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 32/150 (21%)
Query: 202 QLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC----- 256
Q + + + I+GP GTG + ++ + +T I
Sbjct: 30 QKNAFNIVMKAIKEKK--HHVTINGPAGTGATTLTKFII--EALISTGETGIILAAPTHA 85
Query: 257 ------NSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDE---I 307
AS TI + LK+ P E K K +LI DE
Sbjct: 86 AKKILSKLSGKEAS---TIHSILKINPVTYEENVLFE--QKEVPDLAKCRVLICDEVSMY 140
Query: 308 DALESRKQTILYTIFEWPSIP-GSKLVLVG 336
D + + +IP ++ +G
Sbjct: 141 DR------KLFKILLS--TIPPWCTIIGIG 162
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 29.9 bits (67), Expect = 2.0
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 14/96 (14%)
Query: 223 YISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSE 282
I+G PGTGK+A + A + ++ A + E E+
Sbjct: 74 LIAGQPGTGKTA------IAMGMAQA-----LGPDTPFTAIAGSEIFSLEMSKTEALTQA 122
Query: 283 RHQLGAILKYFDTKHKSILLILDEIDALESRKQTIL 318
+ + + L EID + SR Q L
Sbjct: 123 FRRSIGVRI---KAGAVHTVSLHEIDVINSRTQGFL 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 29.3 bits (66), Expect = 2.6
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 222 MYISGPPGTGKSASLNLLVSRAEIKDAFK--TIYINCNSVRNAASVYETIVNELKLKPGG 279
M ISG PG GK+ S+ ++ + ++ + +N + R V I + + K
Sbjct: 45 MIISGMPGIGKTTSV-HCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH- 102
Query: 280 KSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFE 323
KHK ++ILDE D++ + Q L E
Sbjct: 103 ------------LPPGKHK--IVILDEADSMTAGAQQALRRTME 132
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.80A {Coccidioides immitis}
Length = 353
Score = 29.5 bits (67), Expect = 2.7
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 361 LMNFAPYSREQILEII--SQKLKQTDKFNMFNASALQLLAGKVAAV 404
L++ A + + ++ + K+T K + L+GK A+
Sbjct: 26 LLSIADLTPTEFATLVRNASSYKKTIKSDSMPERLTGALSGKTVAM 71
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 29.8 bits (67), Expect = 2.7
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 217 ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254
+ IS P +GK+ + + + K +YI
Sbjct: 37 LEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYI 74
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.4 bits (65), Expect = 2.9
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 224 ISGPPGTGKSASL-------NLLV------SRAEIKDAFKTIYINCNSVRNAASVYETIV 270
+ G PG GK+ + L+ + I+ I + N +V ++
Sbjct: 166 VDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLM 225
Query: 271 NELKLKP 277
N K
Sbjct: 226 NYGKGAR 232
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 28.9 bits (65), Expect = 2.9
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 220 GSMY-ISGPPGTGKS 233
++ +SG PGTGK+
Sbjct: 23 RNVVLLSGGPGTGKT 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 28.8 bits (65), Expect = 3.5
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 20/88 (22%)
Query: 226 GPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQ 285
GPPGTGK+ L+++A A +T N +R S EL K G+
Sbjct: 58 GPPGTGKT-----LLAKAV---ATET---NATFIRVVGS-------ELVKKFIGEGAS-L 98
Query: 286 LGAILKYFDTKHKSILLILDEIDALESR 313
+ I K K SI+ I DEIDA+ ++
Sbjct: 99 VKDIFKLAKEKAPSIIFI-DEIDAIAAK 125
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna
unguiculata}
Length = 225
Score = 28.8 bits (64), Expect = 3.5
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 60 DLHLGSPRTPSSLLRSLKLDSPKRKIDTALEFASPKRV--FKD 100
D L P T + + L + ID+A K V FK
Sbjct: 93 DKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG 135
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 29.0 bits (65), Expect = 3.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 204 EGIRQFLLGHVNNETSGSMYISGPPGTGKS 233
E ++ LL + G + + G GTGKS
Sbjct: 30 EDMKLALLLTAVDPGIGGVLVFGDRGTGKS 59
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 28.8 bits (65), Expect = 4.1
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 279 GKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTI-LYTIFEWPSIPGSKLVLVGV 337
G QL I K T+ + I+ + ++ W S+ +
Sbjct: 234 GHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVS 293
Query: 338 ANALDLTDRML 348
ALD D++L
Sbjct: 294 PEALDFLDKLL 304
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 28.7 bits (64), Expect = 4.5
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 220 GSMY-ISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254
S+ +G GTGK+ L + + I
Sbjct: 281 DSIILATGATGTGKT-LLVSRFVENACANKERAILF 315
Score = 28.4 bits (63), Expect = 6.3
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 220 GSMY-ISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254
G +SG GTGK+ + I+ +++
Sbjct: 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 28.7 bits (64), Expect = 5.1
Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 37/212 (17%)
Query: 222 MYISGPPGTGKSASLNLLV------SRAEIKDAFKTIYINCNSVRNAASVYETIVNEL-- 273
+ + GP GTGK L+ +K + N V E+
Sbjct: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 98
Query: 274 -------------KLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYT 320
LK + E+ ++K + I++E ++L Q L
Sbjct: 99 SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCV--IINEANSLTKDAQAALRR 156
Query: 321 IFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKL 380
E S +L++ V ++ ++ +++ L+ S +I I+S +
Sbjct: 157 TMEKYS-KNIRLIM--VCDS---MSPIIAPIKSQC----LLIRCPAPSDSEISTILSDVV 206
Query: 381 KQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412
++ + L+ +A + + +G++R ++
Sbjct: 207 TN-ERIQLETKDILKRIA-QAS--NGNLRVSL 234
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 28.5 bits (63), Expect = 5.8
Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 18/122 (14%)
Query: 153 FKAFIRDDEDLIKRSPAKLCSPRKLLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLG 212
K + D + I + S + Q + ++Q +
Sbjct: 139 LKRVLTADNEAILWRQNQPFSL--------AHFTPRTDWYPATGAPQPEQQQLLKQLM-- 188
Query: 213 HVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272
G ++ G GKSA L+SR + + + + + +
Sbjct: 189 ---TMPPGVAAVTAARGRGKSALAGQLISR-----IAGRAIVTAPAKASTDVLAQFAGEK 240
Query: 273 LK 274
+
Sbjct: 241 FR 242
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 28.4 bits (63), Expect = 6.1
Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 20/149 (13%)
Query: 301 LLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPT 360
+L +DE+ L+ T L+ E P +++ +N + R + + +
Sbjct: 298 VLFVDEVHMLDIECFTYLHRALESSIAP----IVIFASNRGNCVIRGTEDITSPHGIPLD 353
Query: 361 L------MNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414
L + Y+ +++ +II + + + AL L +R
Sbjct: 354 LLDRVMIIRTMLYTPQEMKQIIKIRAQTEGI--NISEEALNHLGEI--GTKTTLR----Y 405
Query: 415 TNHLIDLTYD--NVKENGEVTGIGLKEVL 441
+ L+ + + ++E+
Sbjct: 406 SVQLLTPANLLAKINGKDSIEKEHVEEIS 434
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.8 bits (61), Expect = 6.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 224 ISGPPGTGKSASLNLLVSR 242
I+G PGTGK++ ++ +
Sbjct: 15 ITGTPGTGKTSMAEMIAAE 33
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular
signal regulated kinase 3, serine phosphorylation,
threonine phosphorylation; 2.25A {Homo sapiens}
Length = 320
Score = 28.0 bits (63), Expect = 7.1
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 279 GKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVA 338
G E Q+ IL+ H+ ++ L S + P P ++L+
Sbjct: 227 GAHELEQMQLILESIPVVHE------EDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISR 280
Query: 339 NALDLTDRML 348
A+D +++L
Sbjct: 281 EAVDFLEQIL 290
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.9 bits (62), Expect = 7.2
Identities = 6/15 (40%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 220 GSMY-ISGPPGTGKS 233
G+ ++G GTGK+
Sbjct: 30 GTTVLLTGGTGTGKT 44
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 27.2 bits (61), Expect = 8.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 208 QFLLGHVNNETSGSMYISGPPGTGKS 233
L+ + ++ +Y+ G G GKS
Sbjct: 25 AELVYVLRHKHGQFIYVWGEEGAGKS 50
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 27.8 bits (61), Expect = 8.3
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 223 YISGPPGTGKSASLNLLVSRAEIKDAFKTIY 253
Y+ G G GKS + ++ S A
Sbjct: 11 YLDGVYGIGKSTTGRVMASAASGGSPTLYFP 41
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 27.8 bits (61), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257
I G TGK++ L S A +A++ +YIN +
Sbjct: 143 IVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.366
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,877,495
Number of extensions: 405322
Number of successful extensions: 1029
Number of sequences better than 10.0: 1
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 80
Length of query: 490
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 393
Effective length of database: 3,993,456
Effective search space: 1569428208
Effective search space used: 1569428208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.5 bits)