RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy200
(490 letters)
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 89.5 bits (220), Expect = 1e-20
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 13/245 (5%)
Query: 195 ELPGREVQLEGIRQFLLGHVNN--ETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTI 252
LP RE QL+ + L + N + G PGTGK+ +L L + K + +
Sbjct: 17 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFV 76
Query: 253 YINCNSVRNAASVYETIVNE--LKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDAL 310
YIN RN ++ I + G S L ++++ + + L+LD+ L
Sbjct: 77 YINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 136
Query: 311 ESRKQTILYTIFEW-PSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSR 369
+ + + + ++ LV V + + + + P + + ++ F+PY++
Sbjct: 137 APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGI--MGKYVIRFSPYTK 194
Query: 370 EQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVS------GDIRKAIDITNHLIDLTY 423
+QI +I+ + K ++ LQ++A A + GD R AIDI
Sbjct: 195 DQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 254
Query: 424 DNVKE 428
N ++
Sbjct: 255 QNGRK 259
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 75.9 bits (185), Expect = 7e-16
Identities = 40/250 (16%), Positives = 90/250 (36%), Gaps = 23/250 (9%)
Query: 195 ELPGREVQLEGIRQFLLGHVNNETSGSM-----YISGPPGTGKSASLNLLVSR-----AE 244
EL R + E + + L + + S G G GK+ V R A+
Sbjct: 17 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAK 76
Query: 245 IKDAFKTIYINCNSVRNAASVYETIVNE--LKLKPGGKSERHQLGAILKYFDTKHKSILL 302
K Y+N + N ++ IV + ++ G L A++ ++ +L+
Sbjct: 77 EGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLV 136
Query: 303 ILDEIDALESRKQTILYTIFEW--------PSIPGSKLVLVGVANALDLTDRMLPRLQAN 354
ILDE ++ S + ++ +++ + VA+ + M ++
Sbjct: 137 ILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQV 196
Query: 355 VTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVA---AVSGDIRKA 411
+ ++ Y ++ I+ Q+ + + ++ L+L++ G R+A
Sbjct: 197 ESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRA 256
Query: 412 IDITNHLIDL 421
I ++
Sbjct: 257 IVALKMACEM 266
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 49.7 bits (118), Expect = 2e-07
Identities = 45/252 (17%), Positives = 84/252 (33%), Gaps = 30/252 (11%)
Query: 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254
++ G+E L + L + SG G GK++ L +
Sbjct: 13 DVVGQEHVLTALANGLS---LGRIHHAYLFSGTRGVGKTSIARL--LAKGLNCETGITAT 67
Query: 255 NCNSVRNAASVYE-TIVNELKLKPGGKSERHQLGAILKYFDTK---HKSILLILDEIDAL 310
C N + + V+ +++ +++ +L + + ++DE+ L
Sbjct: 68 PCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML 127
Query: 311 ESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSRE 370
L E P K +L A ++ + + LQ L
Sbjct: 128 SRHSFNALLKTLEEPP-EHVKFLL-----ATTDPQKLPVTIL-SRCLQFHLKALDVEQIR 180
Query: 371 QILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENG 430
LE I + + ALQLLA A G +R A+ +T+ I +G
Sbjct: 181 HQLEHILNE-----EHIAHEPRALQLLA---RAAEGSLRDALSLTDQAI------ASGDG 226
Query: 431 EVTGIGLKEVLG 442
+V+ + +LG
Sbjct: 227 QVSTQAVSAMLG 238
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 47.8 bits (112), Expect = 9e-07
Identities = 39/249 (15%), Positives = 82/249 (32%), Gaps = 24/249 (9%)
Query: 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254
E+ ++ + +++ L + M GPPGTGK++++ L D K+ +
Sbjct: 13 EVTAQDHAVTVLKKTL----KSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 68
Query: 255 NCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRK 314
N+ + ++K + + Y +K I ILDE D++ +
Sbjct: 69 ELNASDE--RGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKII--ILDEADSMTADA 124
Query: 315 QTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILE 374
Q+ L E S + L F + +
Sbjct: 125 QSALRRTMETYSGVTRF------------CLICNYVTRIIDPLASQCSKFRFKALDASNA 172
Query: 375 IISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVTG 434
I + + + L+ + +GD+R+ I + + + +T
Sbjct: 173 IDRLRFISEQENVKCDDGVLERIL---DISAGDLRRGITLLQSASKGA-QYLGDGKNITS 228
Query: 435 IGLKEVLGV 443
++E+ GV
Sbjct: 229 TQVEELAGV 237
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 41.7 bits (96), Expect = 1e-04
Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%)
Query: 195 ELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKT--- 251
L E ++ + + GP GTGK L+ ++
Sbjct: 12 ALSHNEELTNFLKSLSD---QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 68
Query: 252 ---IYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEID 308
N V E+ G ++R + +LK + + D D
Sbjct: 69 VRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ--VDFQDSKD 126
Query: 309 ALESRKQTILYTIFEWPSIPGSKLVL----VGVANALDLTDRMLPRLQANVTLQPTLMNF 364
L R + ++ + + N + L+
Sbjct: 127 GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIR 186
Query: 365 APYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414
P + + I + ++ + L+ +A A +G++R ++ +
Sbjct: 187 CPAPSDSEISTILSDVVTNERIQLETKDILKRIA---QASNGNLRVSLLM 233
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 41.6 bits (96), Expect = 1e-04
Identities = 33/262 (12%), Positives = 75/262 (28%), Gaps = 27/262 (10%)
Query: 177 LLFSEDKPKVEEKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASL 236
+LF PK K + RE ++E ++ + G TGKS+
Sbjct: 1 MLFDT-SPKDNRK-----DFFDREKEIEKLKGLRAPIT--------LVLGLRRTGKSS-- 44
Query: 237 NLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTK 296
++ + Y+ + EL+ + +R ++LK
Sbjct: 45 -IIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLP--SLLKALKNI 101
Query: 297 HKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDLTD----RMLPRLQ 352
+++ + + + + E V++ + A +L +LP L
Sbjct: 102 QGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALA 161
Query: 353 ANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAI 412
+ S +L + S ++L + + +
Sbjct: 162 YAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSRE----EAIEFL 217
Query: 413 DITNHLIDLTYDNVKENGEVTG 434
D+ + + + E G
Sbjct: 218 RRGFQEADIDFKDYEVVYEKIG 239
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 40.4 bits (94), Expect = 4e-04
Identities = 26/251 (10%), Positives = 72/251 (28%), Gaps = 41/251 (16%)
Query: 181 EDKPKVEEKAKDSCELP--GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNL 238
+ +++ + + +F SG + ++G +GK+ ++
Sbjct: 86 VENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRY---ASGMVIVTGKGNSGKTPLVHA 142
Query: 239 LVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK 298
L KD + T+ + I +
Sbjct: 143 LGEALGGKDKYATV--------RFGEPLSGYN--------TDFNV-FVDDI---ARAMLQ 182
Query: 299 SILLILDEIDAL----------ESRKQTILYTIFEWPSIPGSKLVLVGVA-NALDLTDRM 347
++++D + + + + + ++ S+ +V + N D++
Sbjct: 183 HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKI 242
Query: 348 LPRLQANVTLQPTLMNFAP--YSREQILEIISQKLKQT--DKFNMFN-ASALQLLAGKVA 402
+ ++ T + + Q+L + L++ + S L + K +
Sbjct: 243 VELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEHSVLTIHTSKQS 302
Query: 403 AVSGDIRKAID 413
KAI
Sbjct: 303 GGKQASGKAIQ 313
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 36.7 bits (83), Expect = 0.004
Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 28/224 (12%)
Query: 221 SMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGK 280
+ + GPPG GK+ + +L+ + + A V + N
Sbjct: 54 AAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDN--------M 105
Query: 281 SERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANA 340
S + + K ++I+DE+D + + + + ++ + L+L+
Sbjct: 106 SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERN 165
Query: 341 LDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGK 400
L +P + + +K K + L
Sbjct: 166 LPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR---EKFKLDPN-------VIDRLI-- 213
Query: 401 VAAVSGDIRKAIDITNHLI----DLTYDNVKENGEVTGIGLKEV 440
GDIR+ I++ + + + ++N+ E++ K +
Sbjct: 214 -QTTRGDIRQVINLLSTISTTTKTINHENIN---EISKAWEKNI 253
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 36.6 bits (84), Expect = 0.005
Identities = 24/206 (11%), Positives = 51/206 (24%), Gaps = 48/206 (23%)
Query: 221 SMYISGPPGTGKSASLNLLVSRAEIKDA-FKTIYINCNSVRNAASVYETIVNELKLKPGG 279
GP +GK+ ++ A ++ K + +N R + I
Sbjct: 156 YWLFKGPIDSGKT-----TLAAALLELCGGKALNVNLPLDRLNFELGVAI----DQFLVV 206
Query: 280 KSERHQLGAILKYFDTKHKSILLILDEIDAL------------ESRKQTILYTIFEWPSI 327
+ G + + ++ +D L E + IF
Sbjct: 207 FEDVKGTGGESRDLPS-----GQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFP---- 257
Query: 328 PGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFN 387
+ N + + R + + LE L+
Sbjct: 258 -----PGIVTMNEYSVPKTLQARFVKQI------DFRPKDYLKHCLERSEFLLE-----K 301
Query: 388 MFNASALQLLAGKVAAVSG-DIRKAI 412
S + LL + + ++I
Sbjct: 302 RIIQSGIALLLMLIWYRPVAEFAQSI 327
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 35.9 bits (81), Expect = 0.007
Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 25/218 (11%)
Query: 202 QLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN 261
+ + + ++ I PG G A + L +
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 262 AAS-----VYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQT 316
Y T+ E G ++ L + ++ + + L
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126
Query: 317 ILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEII 376
L E P L R RL A + + L AP + + +
Sbjct: 127 ALLKTLEEPPAE----------TWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL 176
Query: 377 SQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDI 414
S+++ + AL +G A+ +
Sbjct: 177 SREVTMSQD-------ALLAAL---RLSAGSPGAALAL 204
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 35.9 bits (82), Expect = 0.008
Identities = 22/168 (13%), Positives = 58/168 (34%), Gaps = 26/168 (15%)
Query: 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAE--IKDAFKT-IYI 254
RE ++ + + L + + S +++ G G+GKS + +S+++ I + + +++
Sbjct: 24 IREYHVDRVIKKLDEMCDLD-SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL 82
Query: 255 NCNSVRNAASVYETIVNELKLKPGGKSE---------RHQLGAILKYFDTKHKSILLILD 305
+ ++ L LK L ++ + L + D
Sbjct: 83 KDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFD 142
Query: 306 EIDALESRKQTILYTIFEWPSIPGSKLVLV----GVANALDLTDRMLP 349
++ E+ W + ++ ++NA T +
Sbjct: 143 DVVQEET---------IRWAQELRLRCLVTTRDVEISNAASQTCEFIE 181
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 34.6 bits (78), Expect = 0.022
Identities = 24/228 (10%), Positives = 62/228 (27%), Gaps = 21/228 (9%)
Query: 198 GREVQLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257
+ + + + G E+ + + G PG+GK+ L S + I I+ +
Sbjct: 11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKT----SLRSAIFEETQGNVIVIDND 66
Query: 258 SVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHK--------SILLILDEIDA 309
+ + ++ +V + + D
Sbjct: 67 TFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQ 126
Query: 310 LESRKQTILYTIFEWPSIPGSKLVLVGVAN-------ALDLTDRMLPRLQANVTLQPTLM 362
+ Q Y + +G +T R P+ ++ ++
Sbjct: 127 TATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPT 186
Query: 363 NFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRK 410
N + + I + + ++++ ++ K RK
Sbjct: 187 NLETLHKTGLFSDIRLYNR--EGVKLYSSLETPSISPKETLEKELNRK 232
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 33.5 bits (75), Expect = 0.038
Identities = 32/229 (13%), Positives = 54/229 (23%), Gaps = 33/229 (14%)
Query: 204 EGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA 263
+ L + M ISG PG GK+ S++ L + + S
Sbjct: 21 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI 80
Query: 264 SVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFE 323
V + K IL D+ L L S + +
Sbjct: 81 DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 140
Query: 324 WPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQT 383
I LQ +
Sbjct: 141 SNKIIE--------------------------PLQSQCAILRYSKLSDEDVLKRLLQIIK 174
Query: 384 DKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLI----DLTYDNVKE 428
+ + L+ + GD+R+AI+ + + DNV +
Sbjct: 175 LEDVKYTNDGLEAII---FTAEGDMRQAINNLQSTVAGHGLVNADNVFK 220
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 33.6 bits (77), Expect = 0.039
Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 72/279 (25%)
Query: 178 LFSEDKPKVE-------EKAKDSCELPGREVQLEGIRQFLLGHVNNETSGSMYISGPPGT 230
+ +ED+ K ++AK+ E+ + + + + GPPGT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEV----AELVEYLREPSRFQKLGGKIPKGVLMVGPPGT 56
Query: 231 GKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAIL 290
GK+ + A++ I+ + G ++ +
Sbjct: 57 GKTLLAKAIAGEAKVP----FFTISGSDFVE--------------MFVGVGAS-RVRDMF 97
Query: 291 KYFDTKHKSILLILDEIDAL------------ESRKQTILYTIFEWPSIPGSKLVLV-GV 337
+ I+ I DEIDA+ + R+QT+ + E G++ ++V
Sbjct: 98 EQAKKAAPCIIFI-DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 156
Query: 338 ANALDLTDRML---PRLQANVTLQ-PTLMNFAPYSREQILEIISQKLKQTDKFNM----- 388
N D+ D L R V + P REQIL++ +++ +
Sbjct: 157 TNRPDVLDPALLRPGRFDRQVVVGLPD-----VRGREQILKVHMRRVPLAPDIDAAIIAR 211
Query: 389 ----FNASALQLL---AGKVAAVSG-------DIRKAID 413
F+ + L L A AA + KA D
Sbjct: 212 GTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 33.4 bits (75), Expect = 0.045
Identities = 38/231 (16%), Positives = 82/231 (35%), Gaps = 38/231 (16%)
Query: 204 EGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDA-FKTIYINCNSVRNA 262
E I + L +V + + +GPPG GK+ + L ++ + +N + R
Sbjct: 30 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI 89
Query: 263 ASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIF 322
+ E + + KP G + I+ + + + +Q + T+
Sbjct: 90 NVIREKVKEFARTKPIGGASFK---------------IIFLDEADALTQDAQQALRRTME 134
Query: 323 EWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQ-KLK 381
+ S L + + + +++ +Q+ + +++ I L+
Sbjct: 135 MFSSNVRFIL-------SCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 187
Query: 382 QTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDL----TYDNVKE 428
T++ LQ + GD+R+AI+I L T +NV
Sbjct: 188 LTEE-------GLQAIL---YIAEGDMRRAINILQAAAALDKKITDENVFM 228
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 32.3 bits (72), Expect = 0.083
Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 5/187 (2%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSER 283
G +GK+ L++ + +D +I + + + L PG +S R
Sbjct: 5 FVGLCDSGKTLLFVRLLT-GQYRDTQTSITDSSAIYKV--NNNRGNSLTLIDLPGHESLR 61
Query: 284 HQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDL 343
QL K ++ ++ + + + + ++ S +L+ N D+
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLI-ACNKQDI 120
Query: 344 TDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAGKVAA 403
+L L+ L + S L KV
Sbjct: 121 AMAKSAKLIQQQ-LEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEF 179
Query: 404 VSGDIRK 410
+ +
Sbjct: 180 LECSAKG 186
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 32.2 bits (72), Expect = 0.10
Identities = 38/251 (15%), Positives = 86/251 (34%), Gaps = 27/251 (10%)
Query: 195 ELPGREVQLEGIRQFL-LGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIY 253
E G+E + + L + E + ++GPPG GK+ +++ S + +
Sbjct: 10 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 69
Query: 254 INCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESR 313
+ AA + + G ++ + K + S + +ID +
Sbjct: 70 VLVKQGDMAAILTSL-------ERGDVLFIDEIHRLNKAVEELLYSAIED-FQIDIMIG- 120
Query: 314 KQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQIL 373
K +I LVG A + + L++ + L + ++I+
Sbjct: 121 KGPSAKSIRIDI----QPFTLVG---ATTRSGLLSSPLRSRFGIILELDFYTVKELKEII 173
Query: 374 EIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGEVT 433
+ + +A +++A G R AI +T + D+ V + +
Sbjct: 174 KRA-----ASLMDVEIEDAAAEMIAK---RSRGTPRIAIRLTKRVRDML--TVVKADRIN 223
Query: 434 GIGLKEVLGVI 444
+ + + V+
Sbjct: 224 TDIVLKTMEVL 234
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 31.9 bits (71), Expect = 0.15
Identities = 33/253 (13%), Positives = 70/253 (27%), Gaps = 30/253 (11%)
Query: 195 ELPGREVQLEGIRQFL-LGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIY 253
E G+E + +R +L E + + GPPG GK+ +
Sbjct: 10 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTL---------AHVIAHELG 60
Query: 254 INCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDE--IDALE 311
+N A + + + + + I + + + +++ +D +
Sbjct: 61 VNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVI 120
Query: 312 SRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQ 371
+ E P + A + L + + L + P Q
Sbjct: 121 GQGPAARTIRLELPRFT--------LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQ 172
Query: 372 ILEIISQKLKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGE 431
+ ++ L A + G +R A + + D V
Sbjct: 173 GVMRDARLLG-----VRITEEAALEIG---RRSRGTMRVAKRLFRRVRDFA--QVAGEEV 222
Query: 432 VTGIGLKEVLGVI 444
+T E L +
Sbjct: 223 ITRERALEALAAL 235
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 31.4 bits (70), Expect = 0.21
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 224 ISGPPGTGKSASLNLLVSR-AEIKDAFKTIYINCNSVRNAASVYETIV 270
++G PG GKS L I ++ +S S+
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKT 106
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.3 bits (67), Expect = 0.29
Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 27/180 (15%)
Query: 224 ISGPPGTGKSASLNLL----------VSRAEIKDAFKT-----IYINCNSVRNAASVYET 268
I+G PG GK+ + + E++D I + S
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF 64
Query: 269 IVNELKLKPGGKSERHQLGAILKYFDTKHKSI-----LLILDEIDALESRKQTILYTIFE 323
+L G + + AI ++ ++I+DEI +E + + +
Sbjct: 65 TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124
Query: 324 WPSIPGSKLVLVG-VANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQ 382
P +V + + L + L+ P +R+ ILE I L++
Sbjct: 125 IMHDPNVNVVATIPIRDVHPLVKEIR------RLPGAVLIELTPENRDVILEDILSLLER 178
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 30.2 bits (67), Expect = 0.34
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 224 ISGPPGTGKSASLNLLVSR--------AEIKDAFKTIYINCNSVRNAASVYETIVNELKL 275
+ G +GK+ + V+ +K ++ +
Sbjct: 6 VVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVATAV 65
Query: 276 KPGGKSERHQ------LGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPG 329
+ G + H L +L + ++L+ + K ++ + +W S+
Sbjct: 66 EGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLV-EGYKQERHPKVVLVRSEEDWASLQH 124
Query: 330 SKLVLVGVANALDLTDRMLPRLQAN 354
+ +A P
Sbjct: 125 LANIRAVIAWEPLEGPLAHPVFSLA 149
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 30.2 bits (68), Expect = 0.46
Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 47/206 (22%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSER 283
+ GPPG GK+ + A + I + + G
Sbjct: 47 LVGPPGVGKTHLARAVAGEARVP----FITASGSDFVE--------------MFVGVGAA 88
Query: 284 HQLGAILKYFDTKHKSILLILDEIDAL------------ESRKQTILYTIFEWPSIPGSK 331
++ + + I+ I DEIDA+ + R+QT+ + E
Sbjct: 89 -RVRDLFETAKRHAPCIVFI-DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 146
Query: 332 LVLV-GVANALDLTDRML---PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFN 387
++V N D+ D L R + + +I+ +
Sbjct: 147 AIVVMAATNRPDILDPALLRPGRFD-------RQIAIDAPDVKGREQILRIHARGKPLAE 199
Query: 388 MFNASALQLLAGKVAAVSG-DIRKAI 412
+ L LLA + G D+ +
Sbjct: 200 DVD---LALLAKRTPGFVGADLENLL 222
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.0 bits (66), Expect = 0.55
Identities = 27/242 (11%), Positives = 71/242 (29%), Gaps = 18/242 (7%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGGKSER 283
G G+GK+ ++D +K Y+N YE ++ + + R
Sbjct: 5 FVGTAGSGKTTLTGEF--GRYLEDNYKVAYVN-LDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 284 HQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALDL 343
G ++ + + + ++ + ++ Y + + P + L ++
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121
Query: 344 TDRML------PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLL 397
L P + + FA ++ L + D + +
Sbjct: 122 LPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKY 181
Query: 398 AGKVAAVSGDIRKAIDITNHLIDLTYDNVKENGE---------VTGIGLKEVLGVISSVY 448
+ ++ ++ + + + E T G +++ + Y
Sbjct: 182 FEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 241
Query: 449 CT 450
CT
Sbjct: 242 CT 243
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 30.2 bits (67), Expect = 0.58
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 224 ISGPPGTGKSASLNLLVSR-AEIKDAFKTIYINCNSVRNAASVYETIV 270
I+G PG GKS +++ L S + ++ +S R S+
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 103
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 29.9 bits (67), Expect = 0.66
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 312 SRKQTILYTIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQ 371
S K T+ + G + +ALD +L ++ L+ P + EQ
Sbjct: 65 SGKTTLTLQVIAAAQREGKTCAFIDAEHALD--PIYARKLGVDID---NLLCSQPDTGEQ 119
Query: 372 ILEIISQKLKQTDKFNMF 389
LEI L ++ ++
Sbjct: 120 ALEIC-DALARSGAVDVI 136
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 29.6 bits (65), Expect = 0.69
Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 17/194 (8%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYINC-NSVRNAASVYETIVNELKLKPGGKSE 282
+ G PG GK LV + ++++ + +R + EL + +
Sbjct: 13 VLGGPGAGKGTQCEKLVKD------YSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQ 66
Query: 283 RHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANALD 342
L + ++ + + I I SK +L
Sbjct: 67 IVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDI 126
Query: 343 LTDRML---PRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNASALQLLAG 399
+ +R+L + ++ +E + +I + + K
Sbjct: 127 MLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI-EYFETKSKVVRVRCD------R 179
Query: 400 KVAAVSGDIRKAID 413
V V D++ AI
Sbjct: 180 SVEDVYKDVQDAIR 193
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 112
Score = 28.3 bits (63), Expect = 0.78
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 462 SFPLQQKLALASLLLLKSRPNVKDVTLGK 490
PL +KL L +++ + +T G
Sbjct: 8 GLPLHEKLFLLAIVRSLKISHTPYITFGD 36
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.1 bits (64), Expect = 1.0
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYI 254
+ PG GK+ + R IK +T+ +
Sbjct: 14 MDLHPGAGKTKRYLPAIVREAIKRGLRTLIL 44
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 29.1 bits (65), Expect = 1.2
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 218 TSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKP 277
+ I+G G GK +V+R I ++ A+ + EL
Sbjct: 22 AECPVLITGESGVGKE-----VVARL-IHKLSDRSKEPFVALNVASIPRDIFEAEL---- 71
Query: 278 GGKSERHQLGAILK---YFDTKHKSILLILDEIDALESRKQTIL 318
G + GA+ +F+ L LDEI L Q L
Sbjct: 72 FGYEKGAFTGAVSSKEGFFELADGGTLF-LDEIGELSLEAQAKL 114
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.4 bits (62), Expect = 1.5
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 222 MYISGPPGTGKSASLNLLVSRAE 244
++++GPPG GK+ ++ +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLK 26
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 28.2 bits (62), Expect = 1.9
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 210 LLGHVNNETSGSMYIS--GPPGTGKSASLNLLVS--RAEIKDAFKTIYINCNSVRNAASV 265
LLG++ E S+ I G G GKS+++N ++ I R+ A
Sbjct: 21 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF 80
Query: 266 YETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDA 309
I++ L GG L I + K +LL +D +DA
Sbjct: 81 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA 124
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.7 bits (60), Expect = 2.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 224 ISGPPGTGKSASLNLLVSR 242
I G +GKS +N L +
Sbjct: 12 ILGGESSGKSVLVNKLAAV 30
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.9 bits (61), Expect = 2.3
Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 4/134 (2%)
Query: 223 YISGPPGTGKSASLNLLVSRAEIKDAFKTIYI----NCNSVRNAASVYETIVNELKLKPG 278
+ G G G+ N L+++ + A+ + + + + ++
Sbjct: 7 VLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISN 66
Query: 279 GKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVA 338
+ + Y + + A+ + L + P +
Sbjct: 67 NEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTI 126
Query: 339 NALDLTDRMLPRLQ 352
D L RLQ
Sbjct: 127 TPGLNEDESLQRLQ 140
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 130
Score = 27.0 bits (60), Expect = 2.6
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 108 AASAVDATSTSDAVRSVSGSRSSAKADCLRPLSPIKNIILDKKSP----FKAFIRDD 160
AASA+ S+S+ ++ VSG + +C++ + P +I + S F+ +D
Sbjct: 58 AASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKHFRGVADED 114
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 27.9 bits (61), Expect = 2.7
Identities = 35/264 (13%), Positives = 79/264 (29%), Gaps = 50/264 (18%)
Query: 220 GSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELKLKPGG 279
++ + GP G GK+ ++R K A + V+
Sbjct: 50 KNILMIGPTGVGKT-----EIARRLAKLANAPFIKVEATKFTEVGYVGKEVD-------- 96
Query: 280 KSERHQLGAILKYFDTKHKSILLILDEIDAL-------------ESRKQTILYTI----- 321
R + D ++ ++ +DEID + E ++ +L +
Sbjct: 97 SIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV 156
Query: 322 -FEWPSIPGSK-LVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQK 379
+ + L + A + ++P LQ + ++ L + E+IL
Sbjct: 157 STKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHAS 216
Query: 380 L--------KQTDKFNMFNASALQLLAGKVAAVSGDIRKA------IDITNHLIDLTYDN 425
L F A++ +A V+ + + +++
Sbjct: 217 LTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA 276
Query: 426 VKENGE---VTGIGLKEVLGVISS 446
NG+ + + + LG +
Sbjct: 277 SDMNGQTVNIDAAYVADALGEVVE 300
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.7 bits (60), Expect = 2.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 223 YISGPPGTGKSASLNLLVSR 242
+SGP GKS + L R
Sbjct: 6 VLSGPSAVGKSTVVRCLRER 25
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 3.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 222 MYISGPPGTGKSASLNLLV 240
+ ++G GTGKS L L
Sbjct: 53 LLVNGATGTGKSVLLRELA 71
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.3 bits (59), Expect = 3.8
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAA 263
++G PG GKS L + + + I + + A
Sbjct: 6 VTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 333
Score = 27.4 bits (59), Expect = 3.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 58 LSDLHLGSPRTPSSLLRSLKLDSPKRKIDTALE 90
L+D+HLG + ++ K ++ A++
Sbjct: 6 LADIHLGYEQFHKPQREEEFAEAFKNALEIAVQ 38
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 27.2 bits (59), Expect = 3.9
Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 26/204 (12%)
Query: 215 NNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNELK 274
+ S+ + GPP +GK+ ++ +++ C+ + +K
Sbjct: 36 DRTPLVSVLLEGPPHSGKT-----ALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMK 90
Query: 275 LKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVL 334
+ D +L + + L + + G KL++
Sbjct: 91 KIFDDAYKSQL---SCVVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 146
Query: 335 VGVANALDLTD--RMLPRLQANVTLQPTLMNFAPYSREQILEIISQKLKQTDKFNMFNAS 392
+G + D+ ML + + P + + EQ+LE + F
Sbjct: 147 IGTTSRKDVLQEMEMLNAFSTTIHV-PNI-----ATGEQLLEALE-------LLGNFKDK 193
Query: 393 ALQLLAGKV--AAVSGDIRKAIDI 414
+A +V V I+K + +
Sbjct: 194 ERTTIAQQVKGKKVWIGIKKLLML 217
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium
sporotrichioides [TaxId: 5514]}
Length = 354
Score = 27.6 bits (61), Expect = 4.0
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 281 SERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILYTIFEWPSIPGSKLVLVGVANA 340
+ + +F + LL +D S + + ++ W + + + +
Sbjct: 35 NLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQTIVGMVVYSWAKVSKECMADLSIHYT 94
Query: 341 L-----DLTDRMLPRLQ 352
D D P +
Sbjct: 95 YTLVLEDSKDDPYPTMV 111
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 27.0 bits (58), Expect = 4.1
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 207 RQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSR 242
R ++G +++++G G GK+ L
Sbjct: 7 RGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEY 42
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.9 bits (59), Expect = 4.2
Identities = 24/217 (11%), Positives = 65/217 (29%), Gaps = 32/217 (14%)
Query: 202 QLEGIRQFLLGHVNNETSGSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRN 261
QLE +++ + S+ I+G + L E + + +
Sbjct: 2 QLETLKRI----IEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE 57
Query: 262 AASVYET--IVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALESRKQTILY 319
+ + I + L P + +I+ + + + +
Sbjct: 58 NIGIDDIRTIKDFLNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFL 100
Query: 320 TIFEWPSIPGSKLVLVGVANALDLTDRMLPRLQANVTLQPTLMNFAPYSREQILEIISQK 379
E P ++++ L + R+ + F +E+I + + ++
Sbjct: 101 KALE--EPPEYAVIVLNTRRWHYLLPTIKSRVF--RVVVNVPKEFRDLVKEKIGD-LWEE 155
Query: 380 LKQTDKFNMFNASALQLLAGKVAAVSGDIRKAIDITN 416
L ++ A +L A K + +++ +
Sbjct: 156 LPLLERDFKTALEAYKLGAEK----LSGLMESLKVLE 188
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.5 bits (57), Expect = 5.5
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCN 257
+ GTGK+ L L+ + + +
Sbjct: 7 FAAWSGTGKTTLLKKLI--PALCARGIRPGLIKH 38
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.5 bits (57), Expect = 5.6
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYE 267
I+G PGTGK++ ++ + + + + + E
Sbjct: 10 ITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTE 53
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 26.8 bits (58), Expect = 5.6
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 220 GSMYISGPPGTGKSASLNLLVSRAEIKDAFKTIYINCNSVRNAASVYETIVNE 272
G + + G GTGKS ++ L + +A + ++ +V +
Sbjct: 29 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 81
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.7 bits (58), Expect = 5.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 223 YISGPPGTGKSASLNLLVSRAEIKD 247
+S P G GKS+ + L+ + D
Sbjct: 6 IVSAPSGAGKSSLIQALLKTQPLYD 30
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 26.8 bits (59), Expect = 6.1
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 206 IRQFLLGHVNNETSGSMYISGPPGTGKSASLNLL 239
+ + +++ GP TGK+ +
Sbjct: 93 FLGWATKKFGKRNT--IWLFGPATTGKTNIAEAI 124
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.1 bits (56), Expect = 6.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 224 ISGPPGTGKSASLNLLVSR 242
I+GP G GKS + L ++
Sbjct: 7 ITGPAGVGKSTTCKRLAAQ 25
>d1t9ia_ d.95.2.1 (A:) DNA endonuclease I-CreI {Chlamydomonas
reinhardtii [TaxId: 3055]}
Length = 153
Score = 25.9 bits (57), Expect = 7.2
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 253 YINCNSVRNAASVYETIVNELKLKPGGKSERHQLGAILKYFDTKHKSILLILDEIDALES 312
I VR+ SV + I++E+K + L + + K K L+L I+ L S
Sbjct: 60 EIGVGYVRDRGSVSDYILSEIK------PLHNFLTQLQPFLKLKQKQANLVLKIIEQLPS 113
Query: 313 RKQT 316
K++
Sbjct: 114 AKES 117
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.1 bits (56), Expect = 7.6
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 224 ISGPPGTGKSASLNLLVSR 242
++G PG G + S L +
Sbjct: 6 VTGVPGVGSTTSSQLAMDN 24
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 26.3 bits (57), Expect = 8.7
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 224 ISGPPGTGKSASLNLLVSRAEIKDAFKTI 252
SGP G+GKS + + + K +
Sbjct: 32 FSGPQGSGKSFTSIQIYNHLMEKYGGEKS 60
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal
subdomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 25.5 bits (56), Expect = 8.8
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 324 WPSIPGSKLVLVGVANALDLTDRMLPRLQAN 354
W IP + + D + +LQ N
Sbjct: 17 WKDIPNENELQFQIKECHLNADTVSSKLQNN 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.366
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,642,381
Number of extensions: 74629
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 55
Length of query: 490
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,185,626
Effective search space: 475436026
Effective search space used: 475436026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.6 bits)