Query psy2001
Match_columns 202
No_of_seqs 140 out of 503
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 21:43:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00536 SAM_1: SAM domain (St 99.7 6.4E-17 1.4E-21 112.1 7.2 63 122-186 1-64 (64)
2 PF07647 SAM_2: SAM domain (St 99.6 1E-15 2.2E-20 106.4 5.9 64 121-186 1-66 (66)
3 smart00454 SAM Sterile alpha m 99.6 1.4E-14 3E-19 98.5 7.6 65 121-187 1-67 (68)
4 cd00166 SAM Sterile alpha moti 99.6 9.4E-15 2E-19 98.7 6.7 62 123-186 1-63 (63)
5 KOG4375|consensus 98.9 1E-09 2.3E-14 97.7 3.4 65 119-185 205-270 (272)
6 KOG1170|consensus 98.8 5.1E-09 1.1E-13 104.8 3.8 70 118-189 992-1062(1099)
7 KOG3678|consensus 98.7 1.6E-08 3.5E-13 97.6 6.3 74 116-190 457-531 (832)
8 KOG4374|consensus 98.6 1.6E-08 3.5E-13 87.9 1.9 63 126-190 151-214 (216)
9 PF09235 Ste50p-SAM: Ste50p, s 98.4 4.2E-07 9.2E-12 67.7 4.1 69 120-188 2-73 (75)
10 PF02198 SAM_PNT: Sterile alph 98.0 4.9E-06 1.1E-10 61.8 2.7 71 116-188 12-83 (84)
11 KOG4384|consensus 97.8 4E-05 8.7E-10 71.2 6.2 74 124-199 213-288 (361)
12 smart00251 SAM_PNT SAM / Point 97.8 3.2E-05 7E-10 57.9 4.1 66 117-187 13-81 (82)
13 cd08203 SAM_PNT Sterile alpha 97.5 0.00027 5.9E-09 50.7 5.5 61 120-186 1-65 (66)
14 cd08532 SAM_PNT-PDEF-like Ster 97.5 0.00057 1.2E-08 50.8 7.1 68 116-189 5-75 (76)
15 KOG1899|consensus 97.4 0.00028 6.1E-09 70.1 6.2 73 118-191 544-617 (861)
16 cd08757 SAM_PNT_ESE Sterile al 97.4 0.00037 8.1E-09 50.5 4.9 64 120-186 1-67 (68)
17 cd08540 SAM_PNT-ERG Sterile al 97.3 0.0008 1.7E-08 50.0 5.9 67 118-188 2-72 (75)
18 cd08533 SAM_PNT-ETS-1,2 Steril 97.2 0.00074 1.6E-08 49.7 5.3 66 118-188 1-70 (71)
19 cd08541 SAM_PNT-FLI-1 Sterile 97.2 0.0011 2.4E-08 51.1 6.2 70 116-189 12-85 (91)
20 PF09597 IGR: IGR protein moti 97.1 0.00057 1.2E-08 48.6 3.6 55 129-187 1-56 (57)
21 KOG1899|consensus 97.1 0.00068 1.5E-08 67.5 5.2 73 120-194 619-692 (861)
22 cd08531 SAM_PNT-ERG_FLI-1 Ster 97.0 0.0016 3.4E-08 48.3 5.5 67 118-188 2-72 (75)
23 cd08538 SAM_PNT-ESE-2-like Ste 97.0 0.0018 3.8E-08 48.7 5.8 68 118-188 4-74 (78)
24 KOG4403|consensus 96.9 0.00046 1E-08 66.2 2.4 68 118-186 129-196 (575)
25 cd08539 SAM_PNT-ESE-3-like Ste 96.9 0.002 4.4E-08 48.1 5.1 67 118-187 2-71 (74)
26 cd08535 SAM_PNT-Tel_Yan Steril 96.9 0.0011 2.4E-08 48.3 3.7 62 120-187 2-67 (68)
27 cd08534 SAM_PNT-GABP-alpha Ste 96.9 0.0023 4.9E-08 49.1 5.5 69 116-189 14-86 (89)
28 cd08537 SAM_PNT-ESE-1-like Ste 96.8 0.0024 5.3E-08 48.1 4.9 68 118-188 7-77 (78)
29 cd08542 SAM_PNT-ETS-1 Sterile 96.8 0.0033 7.2E-08 48.2 5.4 68 116-188 14-85 (88)
30 cd08543 SAM_PNT-ETS-2 Sterile 96.7 0.0038 8.3E-08 48.0 5.6 69 116-189 14-86 (89)
31 KOG1738|consensus 96.5 0.0031 6.7E-08 62.4 4.5 70 119-189 2-73 (638)
32 cd08536 SAM_PNT-Mae Sterile al 96.2 0.0078 1.7E-07 43.6 4.3 52 120-175 1-56 (66)
33 KOG1945|consensus 95.3 0.038 8.2E-07 51.9 5.9 66 118-185 261-327 (377)
34 KOG0196|consensus 94.1 0.11 2.4E-06 53.6 6.3 63 126-190 923-987 (996)
35 KOG3930|consensus 93.8 0.076 1.6E-06 49.6 4.2 49 140-189 19-68 (389)
36 KOG0249|consensus 86.1 0.55 1.2E-05 48.1 2.7 53 116-170 753-809 (916)
37 KOG3804|consensus 60.7 4.4 9.5E-05 38.6 1.3 71 116-189 57-130 (390)
38 KOG4374|consensus 56.0 9.7 0.00021 33.8 2.5 65 124-189 115-180 (216)
39 KOG4279|consensus 53.1 29 0.00063 36.7 5.7 66 124-190 1150-1216(1226)
40 PF13543 KSR1-SAM: SAM like do 52.6 39 0.00084 27.7 5.4 59 127-186 67-129 (129)
41 KOG3678|consensus 49.2 39 0.00085 34.1 5.7 69 120-188 531-601 (832)
42 PF14520 HHH_5: Helix-hairpin- 44.5 98 0.0021 21.0 6.0 55 128-182 2-58 (60)
43 KOG3791|consensus 43.4 13 0.00028 37.2 1.5 51 128-182 477-528 (569)
44 PF10281 Ish1: Putative stress 43.1 24 0.00051 22.4 2.2 15 122-136 2-16 (38)
45 PF13877 RPAP3_C: Potential Mo 42.0 34 0.00074 25.1 3.3 34 125-160 20-53 (94)
46 KOG0249|consensus 40.7 33 0.00072 35.7 3.9 80 119-200 583-664 (916)
47 COG4396 Mu-like prophage host- 40.4 27 0.00059 29.6 2.7 52 116-172 101-153 (170)
48 PLN03186 DNA repair protein RA 35.5 1.2E+02 0.0025 28.2 6.3 55 130-185 28-84 (342)
49 COG4476 Uncharacterized protei 35.1 54 0.0012 25.5 3.4 33 122-158 9-41 (90)
50 PF08806 Sep15_SelM: Sep15/Sel 34.9 16 0.00034 27.2 0.5 21 118-139 57-77 (78)
51 TIGR00373 conserved hypothetic 31.8 78 0.0017 26.1 4.1 53 129-186 4-56 (158)
52 TIGR00014 arsC arsenate reduct 29.8 1.1E+02 0.0024 23.5 4.4 28 122-150 34-61 (114)
53 PF04904 NCD1: NAB conserved r 26.1 1.9E+02 0.0042 22.1 5.0 64 125-190 8-75 (82)
54 PTZ00035 Rad51 protein; Provis 25.5 2.1E+02 0.0045 26.3 6.1 56 130-186 23-80 (337)
55 PF07352 Phage_Mu_Gam: Bacteri 25.2 79 0.0017 25.5 3.1 46 125-174 92-140 (149)
56 PRK04301 radA DNA repair and r 24.4 2.1E+02 0.0046 25.4 5.9 52 133-184 8-61 (317)
57 KOG1945|consensus 24.3 25 0.00055 33.5 0.0 71 116-189 141-211 (377)
58 PLN03187 meiotic recombination 22.2 2.6E+02 0.0056 26.0 6.1 56 130-186 31-88 (344)
59 TIGR02238 recomb_DMC1 meiotic 22.1 1.9E+02 0.0042 26.3 5.2 50 138-187 8-59 (313)
60 PRK04387 hypothetical protein; 21.1 1.4E+02 0.003 23.2 3.5 36 122-161 9-44 (90)
61 PF08513 LisH: LisH; InterPro 21.0 1E+02 0.0022 18.3 2.2 20 129-149 7-26 (27)
62 PF00165 HTH_AraC: Bacterial r 20.5 90 0.002 19.5 2.0 26 122-149 7-32 (42)
No 1
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.69 E-value=6.4e-17 Score=112.07 Aligned_cols=63 Identities=32% Similarity=0.679 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHH
Q psy2001 122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMR 186 (202)
Q Consensus 122 ~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr 186 (202)
+.|++++|++||.++ |+++|++.|+++.|||+.|+.|+++||. .||| ++|+|.||+++|++||
T Consensus 1 s~W~~~~V~~WL~~~-~l~~y~~~F~~~~i~g~~L~~lt~~dL~-~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 1 SEWSVEDVSEWLKSL-GLEQYAENFEKNYIDGEDLLSLTEEDLE-ELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp GGTSHHHHHHHHHHT-TGGGGHHHHHHTTSSHHHHTTSCHHHHH-HTT-SSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHC-CCHHHHHHHHcCCchHHHHHhcCHHHHH-HcCCCCHHHHHHHHHHHHHhC
Confidence 369999999999998 9999999999999999999999999996 5999 5699999999999997
No 2
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.61 E-value=1e-15 Score=106.42 Aligned_cols=64 Identities=25% Similarity=0.623 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHH
Q psy2001 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMR 186 (202)
Q Consensus 121 V~~WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr 186 (202)
|..||.++|++||.++ |+.+|++.|++++||| ..|+.|++++|. .||| ..|+|.||+++|++||
T Consensus 1 v~~w~~~~v~~WL~~~-gl~~y~~~f~~~~i~g~~~L~~l~~~~L~-~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 1 VSTWSPEDVAEWLKSL-GLEQYADNFRENGIDGLEDLLQLTEEDLK-ELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp GGGHCHHHHHHHHHHT-TCGGGHHHHHHTTCSHHHHHTTSCHHHHH-HTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC-CcHHHHHHHHHcCCcHHHHHhhCCHHHHH-HcCCCCHHHHHHHHHHHHHcC
Confidence 4679999999999998 9999999999999999 999999999995 8999 8999999999999997
No 3
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=99.56 E-value=1.4e-14 Score=98.52 Aligned_cols=65 Identities=29% Similarity=0.647 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCC-HHHHHHhhCC-CcchHHHHHHHHHHHHH
Q psy2001 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQ-AKHLMEAMSM-KLGPALKIVAKIDSMRQ 187 (202)
Q Consensus 121 V~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLt-eedL~k~LGI-KLGprlKI~~~Ik~Lr~ 187 (202)
+..|++++|++||..+ ||.+|++.|++++|||..|+.++ .++| +.||| ..|+|.+|+..|+.||.
T Consensus 1 ~~~w~~~~v~~wL~~~-g~~~y~~~f~~~~i~g~~ll~~~~~~~l-~~lgi~~~~~r~~ll~~i~~l~~ 67 (68)
T smart00454 1 VSQWSPESVADWLESI-GLEQYADNFRKNGIDGALLLLLTSEEDL-KELGITKLGHRKKILKAIQKLKD 67 (68)
T ss_pred CCCCCHHHHHHHHHHC-ChHHHHHHHHHCCCCHHHHHhcChHHHH-HHcCCCcHHHHHHHHHHHHHHHh
Confidence 3679999999999998 99999999999999999999999 7777 68999 89999999999999985
No 4
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=99.56 E-value=9.4e-15 Score=98.71 Aligned_cols=62 Identities=27% Similarity=0.640 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHH
Q psy2001 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMR 186 (202)
Q Consensus 123 ~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr 186 (202)
.||+++|++||.++ |+++|++.|++++|||..|+.|++++|. .|||+ .|+|.+|+.+|+.|+
T Consensus 1 ~w~~~~V~~wL~~~-~~~~y~~~f~~~~i~g~~L~~l~~~dL~-~lgi~~~g~r~~i~~~i~~l~ 63 (63)
T cd00166 1 NWSPEDVAEWLESL-GLGQYADNFRENGIDGDLLLLLTEEDLK-ELGITLPGHRKKILKAIQKLK 63 (63)
T ss_pred CCCHHHHHHHHHHc-ChHHHHHHHHHcCCCHHHHhHCCHHHHH-HcCCCCHHHHHHHHHHHHHcC
Confidence 59999999999997 9999999999999999999999999996 99995 599999999999875
No 5
>KOG4375|consensus
Probab=98.88 E-value=1e-09 Score=97.70 Aligned_cols=65 Identities=25% Similarity=0.478 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHH
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSM 185 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~L 185 (202)
+-+-.||+.||.+||+++ .+.+|-+.|.+|+|||..|..|+++|++ .+|+ .+|+|..|-++++.|
T Consensus 205 Kpl~~Wsk~DV~dWLssl-~L~E~~~aF~d~eIdG~hLp~l~k~df~-~LGVTRVgHRmnIerALr~l 270 (272)
T KOG4375|consen 205 KPLQRWSKIDVNDWLSSL-HLIEYDDAFHDIEIDGKHLPLLRKLDFR-GLGVTRVGHRMNIERALRQL 270 (272)
T ss_pred cccceeccccHHHHHHhh-hhhhcchhhhhcccccchhhhcchhhhh-cccchhhhhHHHHHHHHHHh
Confidence 557789999999999998 8999999999999999999999999996 7999 899999999999887
No 6
>KOG1170|consensus
Probab=98.75 E-value=5.1e-09 Score=104.76 Aligned_cols=70 Identities=29% Similarity=0.635 Sum_probs=64.8
Q ss_pred CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
..++..|++++|+.||+.+ ++.+|.+.|++|+|.|.-||-|...|| +.+|+ |+|+.++|+.+|++||...
T Consensus 992 ~a~~~~w~seeV~awLe~~-~LsEy~d~f~kndirGseLl~L~rrDL-kdlgvtkVGhvkril~aIkdl~~~~ 1062 (1099)
T KOG1170|consen 992 FANIPYWTSEEVCAWLESI-GLSEYKDTFRKNDIRGSELLHLERRDL-KDLGVTKVGHVKRILSAIKDLRAQN 1062 (1099)
T ss_pred cccCccccHHHHHHHHhcc-ccchhhhhhhccCcccceeeecCcccc-cccchhhhHHHHHHHHHHHHHHhcc
Confidence 4578999999999999998 999999999999999999999999999 57888 9999999999999996554
No 7
>KOG3678|consensus
Probab=98.73 E-value=1.6e-08 Score=97.65 Aligned_cols=74 Identities=27% Similarity=0.500 Sum_probs=67.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcc-hHHHHHHHHHHHHHHhc
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLG-PALKIVAKIDSMRQAAE 190 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLG-prlKI~~~Ik~Lr~~~~ 190 (202)
.....|-.|++.||..||++| ||++|++.|+++.+||.-||-||++||..++||+-| +|+++++.+..|+....
T Consensus 457 ~l~~qVPgWt~AdVQ~WvkkI-GFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv~Ad 531 (832)
T KOG3678|consen 457 KLAQQVPGWTCADVQYWVKKI-GFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAAD 531 (832)
T ss_pred hhhccCCCcchHHHHHHHHHh-CHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhc
Confidence 345678889999999999998 999999999999999999999999999989999766 78999999999988764
No 8
>KOG4374|consensus
Probab=98.60 E-value=1.6e-08 Score=87.93 Aligned_cols=63 Identities=29% Similarity=0.412 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001 126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 126 vedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~ 190 (202)
.++|-.||..+ ||+.|...|..++||..+|+.||+++| +.||| .+|+|.||+++|.++|....
T Consensus 151 ~~~vl~~L~~l-glg~y~~~f~~~evd~~~l~~lte~dl-k~~gi~~~GpRkKi~~A~~~~r~~~s 214 (216)
T KOG4374|consen 151 TEGVLMELGIL-GLGAYWKMFEAIEVDMDNLRLLTEEDL-KDMGINSVGPRKKILCAIGKLRRSFS 214 (216)
T ss_pred cchHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcccchh-hhhcccccCcchhhhhhhhccccccc
Confidence 57899999997 999999999999999999999999999 58999 99999999999999987543
No 9
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=98.37 E-value=4.2e-07 Score=67.68 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=51.9
Q ss_pred CCCCCCHHHHHHHHHhCCCC---hHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 120 NPLKWTVTEVCDFIRNLPGC---AEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 120 nV~~WTvedV~ewL~sl~Gc---~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
+...||+++|+.|..+..+. ......|++|+|+|..|..|+-+|=.+..+--+..|+|+--.|++|+..
T Consensus 2 ~~~~Wsv~eVv~WC~~~L~l~~~d~l~~~l~en~I~Gd~L~eLtl~DCKeLc~~d~~~Aik~Ki~iNkL~dt 73 (75)
T PF09235_consen 2 DFSNWSVDEVVSWCISSLELDDEDPLCNNLRENDITGDVLPELTLEDCKELCDNDLKLAIKLKILINKLRDT 73 (75)
T ss_dssp -TTT--HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHHHHHHHHCTTS-HHHHHHHHHHHHHHHH-
T ss_pred ccccccHHHHHHHHHHhcCCCCCCHHHHHHHHccCccchhhhccHHHHHHHcCccHHHHHHHHHHHHhhhhc
Confidence 57889999999999443233 3377779999999999999999999766776888899999999999864
No 10
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=97.97 E-value=4.9e-06 Score=61.78 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
..+.++..||.+||.+||.-. ..+.-..-.|..-.|||..|..|++++++...+. +..-.|+..++.||..
T Consensus 12 ~~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~lt~e~F~~~~~~--~~G~~Ly~~L~~Lk~~ 83 (84)
T PF02198_consen 12 WLPKDPRLWTKEDVLQWLRWVVREFDLPAIDFSRFNMNGRELCSLTKEDFRRRFPS--GYGDILYSHLQLLKKC 83 (84)
T ss_dssp TSCSSGGG--HHHHHHHHHHHHHHTT-SSCHGGGGTS-HHHHHHSHHHHHHHHSTH--TTHHHHHHHHHHHHHH
T ss_pred CCCCChhhCCHHHHHHHHHHHHHhcCCCcCchhccCCCHHHHHHcCHHHHHHHcCC--CcHHHHHHHHHHHHHc
Confidence 457799999999999999532 1121112235555899999999999999755443 6778899999999864
No 11
>KOG4384|consensus
Probab=97.80 E-value=4e-05 Score=71.15 Aligned_cols=74 Identities=14% Similarity=0.270 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccCCCCCCCC
Q psy2001 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGAAGAPPPA 199 (202)
Q Consensus 124 WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~~~~~~~~ 199 (202)
--..-|++||..| ++++|.+.|.+|.-| =+.+-.++++||. ++|| ..++|.||+.+|+.|+....+..+.....
T Consensus 213 ~~~~~~~ewL~~i-~le~y~~~~L~nGYd~le~~k~i~e~dL~-~lgI~nP~Hr~kLL~av~~~~e~d~~~~~~~~~e 288 (361)
T KOG4384|consen 213 PHPKSLEEWLRRI-GLEEYIETLLENGYDTLEDLKDITEEDLE-ELGIDNPDHRKKLLSAVELLKEIDSGSEQVGENE 288 (361)
T ss_pred CCchHHHHHHHHh-hHHHHHHHHHHcchHHHHHHHhccHHHHH-HhCCCCHHHHHHHHHHHHHHHhccccccccCCCc
Confidence 3467799999998 999999999999988 7889999999995 8999 89999999999999999987777766554
No 12
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=97.77 E-value=3.2e-05 Score=57.87 Aligned_cols=66 Identities=15% Similarity=0.284 Sum_probs=49.9
Q ss_pred CCCCCCCCCHHHHHHHHHhC-C--CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001 117 SLPNPLKWTVTEVCDFIRNL-P--GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ 187 (202)
Q Consensus 117 ~~snV~~WTvedV~ewL~sl-~--Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~ 187 (202)
.+.++..||.++|..||.-. + ++.. -.|..-+|||++|..|+++|++...+ +..-.|+..++.||.
T Consensus 13 ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~--~~~~~f~m~G~~Lc~ls~edF~~~~p---~~GdiL~~hL~~Lk~ 81 (82)
T smart00251 13 IPADPQLWTEDHVLEWLEWAVKEFSLSP--IDFSKFDMSGKELCSMSKEEFLERAP---FGGDILWSHLQILRK 81 (82)
T ss_pred CCCChhhCCHHHHHHHHHHHHHhcCCCC--CCcccCCCCHHHHHcCCHHHHHHHcC---CchHHHHHHHHHHHh
Confidence 46789999999999999543 1 2221 11333389999999999999986665 566788999999985
No 13
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=97.49 E-value=0.00027 Score=50.69 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHhC---CCChH-HHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001 120 NPLKWTVTEVCDFIRNL---PGCAE-YVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186 (202)
Q Consensus 120 nV~~WTvedV~ewL~sl---~Gc~e-yaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr 186 (202)
++..||.++|..||.-. .++.. -...| .+||+.|..|+++++....+- .| -.|+..+..||
T Consensus 1 dP~~Wt~~~V~~Wl~w~~~~f~L~~~~~~~F---~m~G~~Lc~ls~edF~~~~p~-~G--diL~~hL~~l~ 65 (66)
T cd08203 1 DPRLWTKEHVLQWLEWAVKEFSLPPIDFSKF---NMNGKELCLLTKEDFLRRAPS-GG--DILYEHLQLLR 65 (66)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCCCChhhc---CCCHHHHHhCCHHHHHHHcCC-cH--HHHHHHHHHHh
Confidence 47889999999999432 13433 23444 999999999999999765553 44 45677777766
No 14
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=97.47 E-value=0.00057 Score=50.85 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=50.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
..+.++..||.++|..||.-. .++.. .+..=.|||++|-.|+++|+.....- .|+ .|+..++-||+..
T Consensus 5 ~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~edF~~r~p~-~Gd--iL~~hL~~lk~a~ 75 (76)
T cd08532 5 GISPDPYQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEEDFRRRAPQ-GGD--TLHAQLDIWKSAA 75 (76)
T ss_pred CCCCChhhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHHHHHHHcCC-chh--HHHHHHHHHHHhh
Confidence 457899999999999999432 24443 34455999999999999999765443 554 5788888888753
No 15
>KOG1899|consensus
Probab=97.41 E-value=0.00028 Score=70.09 Aligned_cols=73 Identities=12% Similarity=0.318 Sum_probs=64.8
Q ss_pred CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHHHHhcc
Q psy2001 118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMRQAAEG 191 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr~~~~~ 191 (202)
+.....|+.++||+||..+ |+++|..--++.--.|..||..+..|+.+++||| -=+|+||.-+|+.|-.+...
T Consensus 544 ~~pfa~W~~EqvcnWlae~-Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeLnIKhplHRKkl~lal~ai~~keee 617 (861)
T KOG1899|consen 544 PLPFADWRSEQVCNWLAEI-GLGQYMNEVRRWVRSGRTFLTASPQDYEKELNIKHPLHRKKLALALRAIEEKEEE 617 (861)
T ss_pred CCchhhccHHHHHHHHHHh-chHHHHHHHHHHHhcCchhhcCCHHHHHHHhccCCchHHHHHHHHHHHhcccccc
Confidence 3447889999999999998 9999999888888899999999999999999996 58999999999998766543
No 16
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=97.36 E-value=0.00037 Score=50.46 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001 120 NPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186 (202)
Q Consensus 120 nV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr 186 (202)
++..||.++|..||.-. .++....-.|..-.|||++|..|++++++...+. .|+ -|+..+++|+
T Consensus 1 dP~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~~~p~-~Gd--iL~~~l~~~~ 67 (68)
T cd08757 1 HPQYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEEEFREAAGS-YGS--LLYAELQRLT 67 (68)
T ss_pred CHhhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHHHHHHHcCC-cHH--HHHHHHHHHh
Confidence 46789999999999532 2333210123333899999999999999865553 555 4567766654
No 17
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=97.27 E-value=0.0008 Score=50.00 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 118 LPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
+.+++.||.++|..||.=. .++... ...| ++|||++|-.|+++|+....+--.| -.|+.+++.||+.
T Consensus 2 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~~~~~~F--~~m~Gk~LC~LskedF~~~ap~~~G--diL~~HL~~Lr~~ 72 (75)
T cd08540 2 PADPTLWSTDHVRQWLEWAVKEYGLPDVDVLLF--QNIDGKELCKMTKDDFQRLTPSYNA--DILLSHLHYLRET 72 (75)
T ss_pred CCChhhcCHHHHHHHHHHHHHHhCCCCCCcccc--cCCCHHHHHhCCHHHHHHHcCCCCc--hHHHHHHHHHHhC
Confidence 5789999999999999422 133321 2333 4699999999999999765544455 5688999999874
No 18
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=97.24 E-value=0.00074 Score=49.71 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 118 LPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
+.++..||.++|..||.=. -++.+. ...| .|||++|-.|+++++....+--.|+ -|+..++.||..
T Consensus 1 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F---~m~Gk~LC~ls~edF~~~~p~~~Gd--IL~~hL~~L~k~ 70 (71)
T cd08533 1 PKDPRLWTETHVRQWLLWAVNEFSLEGVNFQKF---CMSGRDLCALGKERFLELAPDFVGD--ILWEHLEILQKE 70 (71)
T ss_pred CcChhhCCHHHHHHHHHHHHHHcCCCCCCcccC---CCCHHHHHcCCHHHHHHHcCCCcch--HHHHHHHHHHhc
Confidence 4678999999999999422 133321 2334 8999999999999997554433455 468888888763
No 19
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=97.20 E-value=0.0011 Score=51.10 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=51.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
..+.++..||.++|..||.=. .++.+. ...| ++|||++|-.|+++|+.+..+--.| --|+.++..||+..
T Consensus 12 ~IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~vd~~~F--~~m~Gk~LC~LskedF~~~~p~~~g--diLw~HL~~Lr~~~ 85 (91)
T cd08541 12 IVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFF--QNMDGKELCKMNKEDFLRATSLYNT--EVLLSHLSYLRESS 85 (91)
T ss_pred eCCCChhhcCHHHHHHHHHHHHHHcCCCCCChhhc--cCCCHHHHHhCCHHHHHHHcCCCcc--HHHHHHHHHHHhCc
Confidence 567899999999999999422 144321 2334 2699999999999999764433344 56899999999854
No 20
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=97.12 E-value=0.00057 Score=48.60 Aligned_cols=55 Identities=24% Similarity=0.409 Sum_probs=48.3
Q ss_pred HHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001 129 VCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ 187 (202)
Q Consensus 129 V~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~ 187 (202)
|..||..| ++|++|++.|-. +. +.|+.++...| +++||++-.|.-|++...+.|+
T Consensus 1 V~tFL~~IGR~~~~~~~kf~~-~w--~~lf~~~s~~L-K~~GIp~r~RryiL~~~ek~r~ 56 (57)
T PF09597_consen 1 VETFLKLIGRGCEEHAEKFES-DW--EKLFTTSSKQL-KELGIPVRQRRYILRWREKYRQ 56 (57)
T ss_pred CHHHHHHHcccHHHHHHHHHH-HH--HHHHhcCHHHH-HHCCCCHHHHHHHHHHHHHHhC
Confidence 67899988 679999999944 34 89999999999 6899999999999999999885
No 21
>KOG1899|consensus
Probab=97.10 E-value=0.00068 Score=67.46 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=64.0
Q ss_pred CCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccCCC
Q psy2001 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGAAG 194 (202)
Q Consensus 120 nV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~~~ 194 (202)
+-..|++..|..||-.| |+.+|-+.|-++.|||..|..||.+||. .|.+ ..=+-+-|.++|.-||.....++|
T Consensus 619 ka~klDv~wvlRWLDDI-GLPQYKdqF~E~rVDgrmL~ylTvnDll-~lkVvs~lHhaSlkraIqvLr~n~fnpnc 692 (861)
T KOG1899|consen 619 KANKLDVHWVLRWLDDI-GLPQYKDQFAENRVDGRMLHYLTVNDLL-ELKVVSALHHASLKRAIQVLRKNDFNPNC 692 (861)
T ss_pred cccchhHHHHHHHHHhc-CChhhHHHHhhhccchhhHhhhhHhhhh-HHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 56789999999999998 9999999999999999999999999997 5555 667777889999999887765555
No 22
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=97.04 E-value=0.0016 Score=48.33 Aligned_cols=67 Identities=22% Similarity=0.383 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 118 LPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
+.++..||.++|..||.-. .++.+. ...| +.|||++|-.|+++|+....+ -...-.|+..+..||..
T Consensus 2 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F--~~m~Gk~LC~lt~edF~~~~~--~~~GdiL~~hL~~Lr~~ 72 (75)
T cd08531 2 PADPTLWTREHVRQWLEWAVKEYGLQDVDVSRF--QNIDGKELCKMTKEDFLRLTS--AYNADVLLSHLSYLRES 72 (75)
T ss_pred CCChhhcCHHHHHHHHHHHHHHcCCCCCChhhc--cCCChHHHHcCCHHHHHHHcC--CCcchHHHHHHHHHHhC
Confidence 5689999999999999432 133221 1223 489999999999999964332 22335688999999874
No 23
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=97.04 E-value=0.0018 Score=48.68 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 118 LPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
..++..||.++|.+||.-. .++....-.|..=+|||+.|=.|+.++++...+. .|+- |+..+..+|..
T Consensus 4 ~~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~~~p~-~Gdv--Ly~~lq~~~~~ 74 (78)
T cd08538 4 SVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGI-CGEY--LYFILQNIRTQ 74 (78)
T ss_pred CCCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHHHHHHHccc-chHH--HHHHHHHHHhc
Confidence 4688999999999999432 2443321234444999999999999999876653 6764 67788887764
No 24
>KOG4403|consensus
Probab=96.94 E-value=0.00046 Score=66.22 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=50.1
Q ss_pred CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001 118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr 186 (202)
.+.+.+||+|++.+||.+.-.+.+|++.|+.+.|+|.+|..|-.... ..+|--+|-.-++.+.--+|+
T Consensus 129 ~Sev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~-~f~~~~Lgikd~~hrQKlqLk 196 (575)
T KOG4403|consen 129 ESEVHNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNS-DFLGKVLGIKDRSHRQKLQLK 196 (575)
T ss_pred hhhhhcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCch-HHhhhhhccCchHHHHhhhhh
Confidence 36789999999999997765789999999999999999998876555 344444444444444333333
No 25
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=96.91 E-value=0.002 Score=48.08 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=50.0
Q ss_pred CCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001 118 LPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ 187 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~ 187 (202)
..++..||..+|.+||.-. +.+.-..--|.+-.+||++|-+|+.+.++...+ .+|+ -||..+..||.
T Consensus 2 ~~~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~~~~p-~~Gd--iLy~~l~~~~~ 71 (74)
T cd08539 2 EIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAG-TAGQ--LLYSNLQHLKW 71 (74)
T ss_pred CCChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHHHHhhcCC-chHH--HHHHHHHHHhc
Confidence 4688999999999999543 344444345666699999999999999864333 3565 46888888875
No 26
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=96.91 E-value=0.0011 Score=48.29 Aligned_cols=62 Identities=19% Similarity=0.352 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHhC-C--CChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001 120 NPLKWTVTEVCDFIRNL-P--GCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ 187 (202)
Q Consensus 120 nV~~WTvedV~ewL~sl-~--Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~ 187 (202)
++..||.++|..||.-. + ++... ...| .+||++|-.|+++++..... ..| -.|+..+..||.
T Consensus 2 DP~~Wt~~~V~~WL~wa~~ef~L~~i~~~~F---~mnGk~LC~ls~edF~~r~p-~~G--diL~~hL~~L~~ 67 (68)
T cd08535 2 QPRYWSRDDVLQWLRWAENEFSLPPIDSNTF---EMNGKALCLLTKEDFRYRSP-HSG--DVLYELLQHLLK 67 (68)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCCCChhcc---CCCHHHHhcCCHHHHhhhCC-Cch--HHHHHHHHHHHh
Confidence 67899999999999432 1 33221 2334 79999999999999975433 244 467888888875
No 27
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=96.91 E-value=0.0023 Score=49.06 Aligned_cols=69 Identities=16% Similarity=0.344 Sum_probs=50.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
..+.++..||.++|..||.-. .++... ...| .|||++|-.|+++|+..... .+.--.|+.+++.||+..
T Consensus 14 ~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F---~m~Gk~LC~Ls~edF~~r~p--~~~GdiL~~hLe~Lrk~~ 86 (89)
T cd08534 14 KIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDW---NITGRELCSLTQEEFFQRVP--KDPGDIFWTHLELLRKCK 86 (89)
T ss_pred CCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhc---CCCHHHHhcCCHHHHHHHcC--CCccHHHHHHHHHHHHcc
Confidence 457899999999999999432 133321 3344 79999999999999975443 334556889999998754
No 28
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=96.81 E-value=0.0024 Score=48.14 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=51.1
Q ss_pred CCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 118 LPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
..++..||..+|.+||.-. +.+.-..--|.+-++||.+|-.|+.++++...|- +|+ -|+..+.+|+..
T Consensus 7 ~~~Pq~Wtk~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~e~F~~~a~p-~Gd--iLy~~L~~l~~~ 77 (78)
T cd08537 7 GEEPQFWTKTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCALDQMRLVFGP-LGD--QLYAQLRELTSS 77 (78)
T ss_pred CCCcccccHHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCHHHHHHHcCC-hHH--HHHHHHHHHhcc
Confidence 5789999999999999543 1222222335566999999999999999766665 887 468888888764
No 29
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=96.76 E-value=0.0033 Score=48.21 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
..+.+++.||.++|..||.=. -++... ...| .|||++|-.|+.+++.....--.|+ -|+.+++.||..
T Consensus 14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F---~m~Gk~LC~Ls~edF~~~~P~~~Gd--IL~~HL~~L~k~ 85 (88)
T cd08542 14 GIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF---CMNGAALCALGKECFLELAPDFVGD--ILWEHLEILQKE 85 (88)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccC---CCCHHHHHcCCHHHHHhHcCCCccH--HHHHHHHHHHHh
Confidence 557899999999999999321 133321 2444 5999999999999997544222454 578888888875
No 30
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=96.75 E-value=0.0038 Score=47.99 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=49.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
..+.++..||.++|..||.=. -++... ...| +|||++|-.|+++++.....--.|+ -|+.++..|+...
T Consensus 14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F---~m~Gk~LC~Ls~edF~~~ap~~~Gd--IL~~HL~~l~k~~ 86 (89)
T cd08543 14 GIPKNPWLWTEQQVCQWLLWATNEFSLVNVNFQQF---GMNGQELCNLGKERFLELAPDFVGD--ILWEHLEQMIKEN 86 (89)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccC---CCChHHHHcCCHHHHHhHcCCCcch--HHHHHHHHHHHHH
Confidence 457899999999999999321 133331 3444 6999999999999997544322454 5788888887654
No 31
>KOG1738|consensus
Probab=96.48 E-value=0.0031 Score=62.43 Aligned_cols=70 Identities=23% Similarity=0.422 Sum_probs=61.3
Q ss_pred CCCCCCCHHHHHHHHHhCCC-ChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 119 PNPLKWTVTEVCDFIRNLPG-CAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~G-c~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
.+|..||..+|++|++-+.. ..+|...|.++.|.|..|+.++..+|. .||+ .+|+...++.++..|..-.
T Consensus 2 ~~v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le-~lg~rrig~qeli~~av~~L~~l~ 73 (638)
T KOG1738|consen 2 EPVETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLE-TLGVRRIGHQELILEAVEQLWALK 73 (638)
T ss_pred CcccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 46889999999999987633 367999999999999999999999995 7888 8999999999998886644
No 32
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=96.22 E-value=0.0078 Score=43.61 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHhC---CCChH-HHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchH
Q psy2001 120 NPLKWTVTEVCDFIRNL---PGCAE-YVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPA 175 (202)
Q Consensus 120 nV~~WTvedV~ewL~sl---~Gc~e-yaelFreneIDGeaLLlLteedL~k~LGIKLGpr 175 (202)
++..||.++|..||.-. .++.. -...| .+||++|-.|++++....... .|+-
T Consensus 1 DP~~Ws~~~V~~WL~w~~~ef~L~~~~~~~F---~m~Gk~LC~ls~edF~~r~P~-~Gdi 56 (66)
T cd08536 1 DPRSWSREHVRTWLRWVSARYQLEVVDLDKF---LMNGKGLCLMSLEGFLYRVPV-GGKL 56 (66)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCcccc---CCCHHHHHcCCHHHHHhhcCC-ccHH
Confidence 57899999999999432 13333 23344 699999999999999754332 5543
No 33
>KOG1945|consensus
Probab=95.28 E-value=0.038 Score=51.94 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=52.0
Q ss_pred CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHH
Q psy2001 118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSM 185 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~L 185 (202)
..++-.|++.+|..|+.++ ....|+..|..+.++|..|+.+....+ +.||.. --+|-.....|+.+
T Consensus 261 lE~l~~~~k~q~~~~~~s~-~kei~a~e~a~q~~~~y~L~q~q~~~k-~~L~~tk~~dralr~k~le~~ 327 (377)
T KOG1945|consen 261 LELLVTWKKQQVYHWLLSL-NKEIYAQEFAAQEQAGYQLLQLQGRKK-KLLGRTKSHDRALRKKKLEEM 327 (377)
T ss_pred hhhhhhhHHHHHHHHHHhh-hHHHHHHHHHHhhcccchhhccchHHH-HHhhccccchHHHHHHHHHHH
Confidence 4557889999999999986 678899999999999999999999887 689984 43443333344333
No 34
>KOG0196|consensus
Probab=94.13 E-value=0.11 Score=53.62 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCChHHHHHHhhcCC-ChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001 126 VTEVCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 126 vedV~ewL~sl~Gc~eyaelFreneI-DGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~ 190 (202)
..-|-+||+.| +.+.|.+.|...++ .-+.+..++.+||. .+|| -.|+-+||+..|+.+|....
T Consensus 923 f~sv~~WL~aI-km~rY~~~F~~ag~~s~~~V~q~s~eDl~-~~Gitl~GhqkkIl~SIq~m~~q~~ 987 (996)
T KOG0196|consen 923 FRSVGDWLEAI-KMGRYKEHFAAAGYTSFEDVAQMSAEDLL-RLGITLAGHQKKILSSIQAMRAQMR 987 (996)
T ss_pred cCCHHHHHHHh-hhhHHHHHHHhcCcccHHHHHhhhHHHHH-hhceeecchhHHHHHHHHHHHHHhc
Confidence 44578899999 89999999998875 46778899999995 7999 57999999999999998764
No 35
>KOG3930|consensus
Probab=93.84 E-value=0.076 Score=49.58 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=44.4
Q ss_pred hHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 140 AEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 140 ~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
..|+..|-+|.|.-+.||.|+++-| .+||+ -+|+-+-|+++|+-.....
T Consensus 19 ~~YA~~Fv~NRIqk~MLldLnKe~l-~ElGvT~iGDiiaILrh~K~v~~q~ 68 (389)
T KOG3930|consen 19 KKYAKSFVTNRIQKEMLLDLNKETL-SELGVTAIGDIIAILRHIKAVKSQI 68 (389)
T ss_pred hhHHHHHHhhhhhHHHHhhhhHHHH-HHhchhhhhhHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999 69999 6899999999999886654
No 36
>KOG0249|consensus
Probab=86.14 E-value=0.55 Score=48.07 Aligned_cols=53 Identities=21% Similarity=0.513 Sum_probs=44.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCH----HHHHHhhCC
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQA----KHLMEAMSM 170 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLte----edL~k~LGI 170 (202)
....+|.-||-+.|..|+++| |+++|+..+.+-.|-|. |+.|++ .+|.-.++|
T Consensus 753 ~~i~DvlVWsN~RvirWV~~i-gL~eya~NL~eSGVHGa-LlaLdetFd~s~lAl~LqI 809 (916)
T KOG0249|consen 753 TEITDVLVWSNDRVIRWVQSI-GLGEYANNLKESGVHGA-LLALDETFDYSTLALALQI 809 (916)
T ss_pred cccccceEeecHHHHHHHHhc-CHHHHhhhhhhhcccce-eeeecccCChHHHHHHHcC
Confidence 346789999999999999999 99999999999999995 556654 566666777
No 37
>KOG3804|consensus
Probab=60.74 E-value=4.4 Score=38.59 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=49.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhCC---CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLP---GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~---Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
........|+.+||.+||.-.. .....+--|-.-+|+|.+|..++++|+...-+ .+|. -+++.+..++...
T Consensus 57 ~l~~~p~~W~rd~v~~~l~~~~~~~sl~~~~~~~~~f~m~g~~L~~~te~d~~~r~~-~~gd--~l~~~lq~~~~~~ 130 (390)
T KOG3804|consen 57 TLSVEPSLWSRDDVLEWLSFAEAEFSLPANCIAFPRFDINGNALCSSTEEDFRVRAG-TLGD--VLYNSLQEKKEQS 130 (390)
T ss_pred ccccCcccccccchhHHHHHHHHhccCCcccccccccCCCcchhccccHHHhhhcCC-Cccc--hhhhhhhhhhccc
Confidence 4467788999999999996431 22222344556689999999999999864333 4444 4677777776554
No 38
>KOG4374|consensus
Probab=55.98 E-value=9.7 Score=33.78 Aligned_cols=65 Identities=23% Similarity=0.386 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 124 WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
-.=.+.-.++.+-.+++.|...|..++|+=..+..+++.+|+ .|++ -+|.+.+.+..|..+-...
T Consensus 115 f~~pd~~~~~~~~~~l~s~~~~~~~~~~~l~~~~t~~~~vl~-~L~~lglg~y~~~f~~~evd~~~l 180 (216)
T KOG4374|consen 115 FKRPDIQSLLTSRLGLESYIKEFNLQEIDLQTFGTLTEGVLM-ELGILGLGAYWKMFEAIEVDMDNL 180 (216)
T ss_pred hcCCchhhHHHHhhcccccchhhhcchHhhhhcccccchHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334455566655238999999999999999999999999996 7888 8999999999998775543
No 39
>KOG4279|consensus
Probab=53.12 E-value=29 Score=36.69 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHh-cCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhc
Q psy2001 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM-LLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 124 WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLL-lLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~ 190 (202)
=+-+++.+||+.+.-.+.-..+|..+..+=..+| .++.+||+ .+|+.-|-..+|+++|-..|..+.
T Consensus 1150 ~~DeeL~qWL~~~~iDe~si~lilne~fT~~d~l~yvtrddL~-~l~lrgGm~criwraIi~~R~~qt 1216 (1226)
T KOG4279|consen 1150 STDEELVQWLRGLEIDERSIALILNEAFTLSDMLYYVTRDDLL-SLGLRGGMSCRIWRAIIEVRERQT 1216 (1226)
T ss_pred cchHHHHHHHHhcCCchHHHHHHHhccccHHHHHHHhhHhhHh-hhcccCceeehHHHHHHHHHccCC
Confidence 3457899999887333445677777777765544 57889996 799999999999999999998763
No 40
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=52.63 E-value=39 Score=27.69 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCC-hHHHHHHhhcCCChHHHhcCCHHHHHH---hhCCCcchHHHHHHHHHHHH
Q psy2001 127 TEVCDFIRNLPGC-AEYVEDFAMQEIDGQALMLLQAKHLME---AMSMKLGPALKIVAKIDSMR 186 (202)
Q Consensus 127 edV~ewL~sl~Gc-~eyaelFreneIDGeaLLlLteedL~k---~LGIKLGprlKI~~~Ik~Lr 186 (202)
-.+..||.-+ |. .+.++........=++|+.++++.|.. ..|..-+...||..+...||
T Consensus 67 P~l~~WL~vV-gl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~~LR 129 (129)
T PF13543_consen 67 PSLRQWLRVV-GLRPESIQAILSKVLTLEALLEMSDEELKEILNRCGAREEECRRLCRALSNLR 129 (129)
T ss_pred CcHHHHhhhc-CCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 5688999987 66 457777777789999999999998764 35556678889988888775
No 41
>KOG3678|consensus
Probab=49.22 E-value=39 Score=34.12 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCc-chHHHHHHHHHHHHHH
Q psy2001 120 NPLKWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKL-GPALKIVAKIDSMRQA 188 (202)
Q Consensus 120 nV~~WTvedV~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKL-GprlKI~~~Ik~Lr~~ 188 (202)
+.+.-+...+.+||-.+ +.+..|.=.+..|.+|-.-|..|+++.+.+.+||.. -+|+||..+.+..+..
T Consensus 531 dYSs~DeSNLdn~L~gLsPels~YTY~mlt~GvnRSLLssltde~m~naCGI~~~iHR~kl~qA~eta~H~ 601 (832)
T KOG3678|consen 531 DYSSVDESNLDNFLMGLSPELSVYTYQMLTNGVNRSLLSSLTDEMMQNACGITNPIHRLKLTQAFETAKHP 601 (832)
T ss_pred cccccchhhHHHHHhcCChhHHHHhHHHhhccccHHHHHHhhHHHHHHhcCccchHHHHHHHHHHHhhcCC
Confidence 34445567788999877 567788888889999999999999999999999965 5899999888776653
No 42
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=44.49 E-value=98 Score=20.95 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCChH-HHHHHhhcCCCh-HHHhcCCHHHHHHhhCCCcchHHHHHHHH
Q psy2001 128 EVCDFIRNLPGCAE-YVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKI 182 (202)
Q Consensus 128 dV~ewL~sl~Gc~e-yaelFreneIDG-eaLLlLteedL~k~LGIKLGprlKI~~~I 182 (202)
.|...|.+++|.+. .+..+.++.|.- +.|...+.++|.+.-|+----+-+|...+
T Consensus 2 ~~~~~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~ 58 (60)
T PF14520_consen 2 GVFDDLLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAA 58 (60)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHH
Confidence 46777888888865 678888886554 58888899998766565333344454444
No 43
>KOG3791|consensus
Probab=43.38 E-value=13 Score=37.15 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHH
Q psy2001 128 EVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKI 182 (202)
Q Consensus 128 dV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~I 182 (202)
+.-+||+++ +.-+|.+.|+. -+=..++.|++.+|. ..|+ ++|-+.+++++-
T Consensus 477 ~ip~WLksl-rlhKyt~~~~~--t~~~e~l~ls~~~l~-~~Gv~a~g~~~~~L~~~ 528 (569)
T KOG3791|consen 477 EIPEWLKSL-RLHKYTNALKS--TTWFELLILSDMKLQ-HVGVLALGARRKLLKAF 528 (569)
T ss_pred cchHHHHhc-cchhhhccccC--ccHHHhhccchhhcc-cchhhhhhHHHhhhccc
Confidence 455799998 89999999977 899999999999995 6777 889888877653
No 44
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=43.08 E-value=24 Score=22.40 Aligned_cols=15 Identities=7% Similarity=0.461 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHhC
Q psy2001 122 LKWTVTEVCDFIRNL 136 (202)
Q Consensus 122 ~~WTvedV~ewL~sl 136 (202)
..||.+|+.+||.+.
T Consensus 2 dtWs~~~L~~wL~~~ 16 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSH 16 (38)
T ss_pred CCCCHHHHHHHHHHc
Confidence 479999999999985
No 45
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=41.97 E-value=34 Score=25.12 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=28.5
Q ss_pred CHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCC
Q psy2001 125 TVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQ 160 (202)
Q Consensus 125 TvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLt 160 (202)
+.++.++||.++ +...|..+|.. +|+++.|..+=
T Consensus 20 ~~~~~~~yL~~i-~p~~l~~if~~-~l~~~~L~~il 53 (94)
T PF13877_consen 20 DPEERYEYLKSI-PPDSLPKIFKN-SLEPEFLSEIL 53 (94)
T ss_pred CHHHHHHHHHhC-ChHHHHHHHHc-cCCHHHHHHHH
Confidence 456899999998 78889999976 99999887654
No 46
>KOG0249|consensus
Probab=40.66 E-value=33 Score=35.75 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=65.2
Q ss_pred CCCCCCCHHHHHHHHHhCCCCh-HHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccCCCCC
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCA-EYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGAAGAP 196 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~-eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~~~~~ 196 (202)
...-.|+--.|..||..--|.. -|+..-+.|--.|..+..|++..+...+|| .-=+|+|+.-+|.+++.-. +.++|
T Consensus 583 ~p~~~w~~p~vvawlel~vgmpa~yva~c~~nVksg~im~~lsd~eiq~~igisnplhrlklrLaiqe~~slt--sps~p 660 (916)
T KOG0249|consen 583 LPFAQWDGPTVVAWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLT--SPSAP 660 (916)
T ss_pred CchhhcCCCeeeehhhHHhccHHHHHHHHHHHhhhhHHHHhhhhHHHHhhhcccchhhhhhhHHHHHHHHHhc--CCCCC
Confidence 3456799999999998655775 699989999999999999999999889999 6789999999999998643 34445
Q ss_pred CCCC
Q psy2001 197 PPAS 200 (202)
Q Consensus 197 ~~~~ 200 (202)
|-+.
T Consensus 661 ~tsr 664 (916)
T KOG0249|consen 661 PTSR 664 (916)
T ss_pred Cccc
Confidence 4443
No 47
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=40.40 E-value=27 Score=29.63 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=37.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHH-hhCCCc
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLME-AMSMKL 172 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k-~LGIKL 172 (202)
..++++.-=.++-|.+||+.+ ||..+... +++||-+++|.-.+ ..+ .-|||+
T Consensus 101 ~rpPSv~vrgveaV~e~L~rm-gf~rFiRT--k~EinKeAiLnepe--~~kGiaGiki 153 (170)
T COG4396 101 IRPPSVKVRGVEAVLEWLSRM-GFARFIRT--KKEINKEAILNEPE--FSKGIAGIKI 153 (170)
T ss_pred ecCCcceeccHHHHHHHHHHh-hHHHHHHh--HHHhcHHHHhCChh--hhcCCCceee
Confidence 456677778899999999997 88776553 67899999987654 322 445544
No 48
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=35.53 E-value=1.2e+02 Score=28.18 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHHHHhCCCChH-HHHHHhhcCCC-hHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHH
Q psy2001 130 CDFIRNLPGCAE-YVEDFAMQEID-GQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM 185 (202)
Q Consensus 130 ~ewL~sl~Gc~e-yaelFreneID-GeaLLlLteedL~k~LGIKLGprlKI~~~Ik~L 185 (202)
.+.|... |... .+++|+++.|. -+.++..+..+|.+..||....+.++...+.++
T Consensus 28 ~~~l~~~-gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~is~~~~~~~~~~~~~~ 84 (342)
T PLN03186 28 IEQLQAS-GIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKL 84 (342)
T ss_pred HHHHHhC-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 4556554 6655 58999999987 679999999999999999999999999988766
No 49
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.08 E-value=54 Score=25.52 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhc
Q psy2001 122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALML 158 (202)
Q Consensus 122 ~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLl 158 (202)
.+||.+++..-|.-+ ..++++.+..||-+.||.
T Consensus 9 ldWsTEE~~~Vl~Ff----n~VE~aYE~gv~~~~ll~ 41 (90)
T COG4476 9 LDWSTEEMISVLHFF----NAVELAYEKGVDAEDLLG 41 (90)
T ss_pred CCccHHHHHHHHHHH----HHHHHHHHccccHHHHHH
Confidence 469999998887743 467899999999888875
No 50
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=34.93 E-value=16 Score=27.15 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=16.3
Q ss_pred CCCCCCCCHHHHHHHHHhCCCC
Q psy2001 118 LPNPLKWTVTEVCDFIRNLPGC 139 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl~Gc 139 (202)
.-++..|+.|+|.+||.+. |+
T Consensus 57 ~i~i~~w~~d~i~efL~~k-gf 77 (78)
T PF08806_consen 57 RINIEKWKTDEIEEFLNEK-GF 77 (78)
T ss_dssp EEE-SSSSHCHHHHHHHHH-T-
T ss_pred EEEcccCCHHHHHHHHHHh-CC
Confidence 5678999999999999873 53
No 51
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=31.83 E-value=78 Score=26.08 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=35.0
Q ss_pred HHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001 129 VCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186 (202)
Q Consensus 129 V~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr 186 (202)
|.+|+..+ .-.++..++..=-..| .+++++|.+.|||+.-...|++..+.+.+
T Consensus 4 ~~~~~~~~-~g~~~v~Vl~aL~~~~----~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~ 56 (158)
T TIGR00373 4 LNEVVGRA-AEEEVGLVLFSLGIKG----EFTDEEISLELGIKLNEVRKALYALYDAG 56 (158)
T ss_pred HHHHHHHH-cChhHHHHHHHHhccC----CCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 45577666 3344555554322233 28999999999999888888877776543
No 52
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=29.84 E-value=1.1e+02 Score=23.51 Aligned_cols=28 Identities=21% Similarity=0.087 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHhCCCChHHHHHHhhcC
Q psy2001 122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQE 150 (202)
Q Consensus 122 ~~WTvedV~ewL~sl~Gc~eyaelFrene 150 (202)
.-||.+++..|++.+ |...+.++|...+
T Consensus 34 ~p~t~~el~~~l~~~-g~~~~~~lin~~~ 61 (114)
T TIGR00014 34 NPPTKSELEAIFAKL-GLTVAREMIRTKE 61 (114)
T ss_pred CCcCHHHHHHHHHHc-CCchHHHHHhcCC
Confidence 458999999999986 7654345664433
No 53
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.07 E-value=1.9e+02 Score=22.15 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=39.9
Q ss_pred CHHHHHHHHHhCCCChHHHHHHhhcCC-ChHHHhcCCHHHHHHh---hCCCcchHHHHHHHHHHHHHHhc
Q psy2001 125 TVTEVCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEA---MSMKLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 125 TvedV~ewL~sl~Gc~eyaelFreneI-DGeaLLlLteedL~k~---LGIKLGprlKI~~~Ik~Lr~~~~ 190 (202)
+.-+++.-|++. .+-.|-+.|.++.= |=+-|.++.++++.+. .|| .+.-+.+.+..+.|..-..
T Consensus 8 ~elqly~vLqrA-nLl~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM-~sKPLHVrRlqKAL~ew~~ 75 (82)
T PF04904_consen 8 GELQLYRVLQRA-NLLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGM-ASKPLHVRRLQKALQEWST 75 (82)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCc-cCccHHHHHHHHHHHHHhc
Confidence 344777788876 68889999987654 3456777777776554 444 2344455555555544433
No 54
>PTZ00035 Rad51 protein; Provisional
Probab=25.47 E-value=2.1e+02 Score=26.29 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=46.1
Q ss_pred HHHHHhCCCChH-HHHHHhhcCCC-hHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001 130 CDFIRNLPGCAE-YVEDFAMQEID-GQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186 (202)
Q Consensus 130 ~ewL~sl~Gc~e-yaelFreneID-GeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr 186 (202)
.+.|... |... .+++|+++.|. =+.|+..+..+|.+..||....+.+|.....++-
T Consensus 23 ~~~l~~~-g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~~ 80 (337)
T PTZ00035 23 IEKLQSA-GINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLV 80 (337)
T ss_pred HHHHhcC-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence 4455553 6654 68999999995 6799999999999999999999999999888773
No 55
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.19 E-value=79 Score=25.47 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=25.8
Q ss_pred CHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCH---HHHHHhhCCCcch
Q psy2001 125 TVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQA---KHLMEAMSMKLGP 174 (202)
Q Consensus 125 TvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLte---edL~k~LGIKLGp 174 (202)
+.+.|.+||.+. |+.+|... +.+||=.+|+...+ +.+. ..|+++-.
T Consensus 92 ~~~~vl~~Lk~~-gl~~~Ir~--keev~k~alk~~~~~~~~~~~-v~Gv~i~~ 140 (149)
T PF07352_consen 92 DEEKVLEWLKEN-GLKEFIRT--KEEVDKEALKKEPDVDEDGEI-VPGVTIKQ 140 (149)
T ss_dssp -HHHHHHHHHHC-T-GCC----------HHHHTTS-H---HHHH-HTT-----
T ss_pred CHHHHHHHHHHc-CchhhEEe--eeecCHHHHhcCcccccccce-eCCeEEEe
Confidence 899999999985 88777553 67999999999998 7764 67876543
No 56
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=24.40 E-value=2.1e+02 Score=25.44 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=37.9
Q ss_pred HHhCCCChH-HHHHHhhcCCC-hHHHhcCCHHHHHHhhCCCcchHHHHHHHHHH
Q psy2001 133 IRNLPGCAE-YVEDFAMQEID-GQALMLLQAKHLMEAMSMKLGPALKIVAKIDS 184 (202)
Q Consensus 133 L~sl~Gc~e-yaelFreneID-GeaLLlLteedL~k~LGIKLGprlKI~~~Ik~ 184 (202)
|..+.|.+. .++.|++++|+ -+.|..++.++|.+.+|+..-.+.+|++.+..
T Consensus 8 l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~ 61 (317)
T PRK04301 8 LEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAARE 61 (317)
T ss_pred HhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 344556654 57888888776 78888999999998899865566666665543
No 57
>KOG1945|consensus
Probab=24.35 E-value=25 Score=33.52 Aligned_cols=71 Identities=8% Similarity=-0.000 Sum_probs=53.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
........|++++|+.|+.. .+. .|+..|..+++-|-++..++...- +..-.+.+.-+-+...+.+-.+..
T Consensus 141 ~~~~r~g~~sved~~~s~~~-k~l-p~vp~s~~~es~g~S~~~~n~~s~-~~~~s~~peqa~l~~s~~kydr~n 211 (377)
T KOG1945|consen 141 GAVHRDGRWSVEDVEVSVDS-KSL-PGVPFSWFAESLGGSSSRVNFTSP-TEQNSPEPEQAQLIKSSSKYDRMN 211 (377)
T ss_pred cccccccccccccccccccc-CCC-CCcchhhhhcccccchhccCCccc-chhcCCCccceeehhhhhhhhhhh
Confidence 44456778999999999987 344 789999999999999999986554 344447777777777776654433
No 58
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=22.18 E-value=2.6e+02 Score=26.05 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=45.8
Q ss_pred HHHHHhCCCCh-HHHHHHhhcCCC-hHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001 130 CDFIRNLPGCA-EYVEDFAMQEID-GQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186 (202)
Q Consensus 130 ~ewL~sl~Gc~-eyaelFreneID-GeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr 186 (202)
.+.|... |.. ..+++|+++.|. =+.|+..+..+|.+..|+..-.+.||+....++-
T Consensus 31 ~~~l~~~-g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~ 88 (344)
T PLN03187 31 IDKLISQ-GINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLL 88 (344)
T ss_pred HHHHhhC-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 4455554 564 468999999985 7799999999999999999999999998887763
No 59
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=22.09 E-value=1.9e+02 Score=26.26 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=42.8
Q ss_pred CCh-HHHHHHhhcCCC-hHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHH
Q psy2001 138 GCA-EYVEDFAMQEID-GQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQ 187 (202)
Q Consensus 138 Gc~-eyaelFreneID-GeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~ 187 (202)
|.. ..+++|+++.|. =+.|+..+..+|.+..|+..-.+.||.+.+.++..
T Consensus 8 g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~ 59 (313)
T TIGR02238 8 GINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIIN 59 (313)
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhc
Confidence 443 468999999985 67999999999999999999999999999888743
No 60
>PRK04387 hypothetical protein; Provisional
Probab=21.10 E-value=1.4e+02 Score=23.20 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCH
Q psy2001 122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQA 161 (202)
Q Consensus 122 ~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLte 161 (202)
.+||.+++..-+.=+ .-++.-.+..|+.+.||..=.
T Consensus 9 ~dWsteEii~Vi~F~----~~VE~aYE~gv~re~ll~~Y~ 44 (90)
T PRK04387 9 LDWSTEEMISVLHFF----NAVEKAYEKGVDAEELLDAYR 44 (90)
T ss_pred CCCCHHHHHHHHHHH----HHHHHHHHcCCcHHHHHHHHH
Confidence 459999887766532 234667788999999987643
No 61
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=21.00 E-value=1e+02 Score=18.32 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=15.7
Q ss_pred HHHHHHhCCCChHHHHHHhhc
Q psy2001 129 VCDFIRNLPGCAEYVEDFAMQ 149 (202)
Q Consensus 129 V~ewL~sl~Gc~eyaelFren 149 (202)
|.+||.. .|+.+-+..|+++
T Consensus 7 I~~YL~~-~Gy~~tA~~f~~E 26 (27)
T PF08513_consen 7 IYDYLVE-NGYKETAKAFAKE 26 (27)
T ss_dssp HHHHHHH-CT-HHHHHHHHHH
T ss_pred HHHHHHH-CCcHHHHHHHHhc
Confidence 6789988 4999999999764
No 62
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=20.48 E-value=90 Score=19.46 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHhCCCChHHHHHHhhc
Q psy2001 122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQ 149 (202)
Q Consensus 122 ~~WTvedV~ewL~sl~Gc~eyaelFren 149 (202)
..|+++||++.+. + .-.-+..+|+++
T Consensus 7 ~~~~l~~iA~~~g-~-S~~~f~r~Fk~~ 32 (42)
T PF00165_consen 7 QKLTLEDIAEQAG-F-SPSYFSRLFKKE 32 (42)
T ss_dssp SS--HHHHHHHHT-S--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC-C-CHHHHHHHHHHH
Confidence 4599999999875 2 234467788764
Done!