Query psy2001
Match_columns 202
No_of_seqs 140 out of 503
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 21:44:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pk1_B Sex COMB on midleg CG94 99.9 6.7E-23 2.3E-27 153.7 6.4 74 116-189 9-83 (89)
2 1kw4_A Polyhomeotic; SAM domai 99.9 4.4E-22 1.5E-26 148.8 7.0 74 116-189 9-82 (89)
3 2gle_A Neurabin-1; SAM domain, 99.8 4.9E-19 1.7E-23 125.9 5.4 69 119-189 2-71 (74)
4 2e8o_A SAM domain and HD domai 99.8 7.9E-19 2.7E-23 133.3 6.9 73 115-189 21-96 (103)
5 3bs7_A Protein aveugle; sterIl 99.8 1E-18 3.5E-23 125.4 6.8 70 120-190 2-73 (78)
6 3bs5_B Connector enhancer of k 99.8 2E-18 6.8E-23 124.4 7.6 72 119-191 2-75 (80)
7 2d8c_A Phosphatidylcholine:cer 99.7 2E-18 7E-23 131.2 7.3 71 116-189 12-84 (97)
8 3bq7_A Diacylglycerol kinase d 99.7 2.6E-18 8.9E-23 125.1 7.1 70 118-189 4-74 (81)
9 2f3n_A SH3 and multiple ankyri 99.7 2.1E-18 7E-23 124.2 5.9 67 121-189 2-69 (76)
10 1v85_A Similar to ring finger 99.7 1.5E-18 5.1E-23 129.1 5.3 72 116-188 12-87 (91)
11 2ean_A Connector enhancer of k 99.7 3.9E-18 1.3E-22 124.1 6.8 75 117-192 4-80 (83)
12 3bs5_A Protein aveugle; sterIl 99.7 5.1E-18 1.8E-22 130.2 7.0 74 115-189 17-92 (106)
13 1wwv_A Connector enhancer of k 99.6 1.5E-16 5.1E-21 119.5 3.5 74 114-190 4-79 (91)
14 1ow5_A Serine/threonine-protei 99.6 1.9E-15 6.4E-20 113.5 4.4 61 128-190 17-79 (85)
15 3k1r_B Usher syndrome type-1G 99.5 6.1E-14 2.1E-18 101.4 7.5 63 128-192 4-66 (74)
16 2kso_A Ephrin type-A receptor 99.5 6.7E-14 2.3E-18 102.7 6.2 69 119-189 9-79 (82)
17 2kg5_A ARF-GAP, RHO-GAP domain 99.4 6.4E-14 2.2E-18 106.7 5.5 68 119-188 19-88 (100)
18 1ucv_A Ephrin type-A receptor 99.4 2E-13 6.8E-18 99.4 7.0 70 126-197 7-78 (81)
19 2eao_A Ephrin type-B receptor 99.4 3.6E-13 1.2E-17 101.5 7.9 69 121-191 17-87 (99)
20 3h8m_A Ephrin type-A receptor 99.4 2.7E-13 9.4E-18 101.5 6.9 69 119-189 18-88 (90)
21 2e8n_A Ephrin type-A receptor 99.4 5E-13 1.7E-17 98.7 7.5 66 123-190 9-76 (88)
22 1uqv_A STE50 protein; SAM, ste 99.4 4.5E-13 1.5E-17 100.5 6.7 70 117-188 5-79 (85)
23 1b4f_A EPHB2; SAM domain, EPH 99.4 5.2E-13 1.8E-17 97.0 6.7 64 125-190 10-75 (82)
24 2qkq_A Ephrin type-B receptor 99.4 1.7E-13 5.7E-18 100.0 3.7 63 125-189 14-78 (83)
25 2ke7_A Ankyrin repeat and ster 99.4 9.7E-14 3.3E-18 105.5 2.2 78 119-198 15-97 (103)
26 1b0x_A Protein (EPHA4 receptor 99.4 8E-13 2.7E-17 98.8 6.1 67 122-190 22-90 (94)
27 2dkz_A Hypothetical protein LO 99.3 7.2E-12 2.5E-16 93.8 8.7 70 113-183 7-77 (84)
28 2eam_A Putative 47 kDa protein 99.3 6.9E-13 2.4E-17 96.1 3.1 63 123-187 9-75 (80)
29 2dl0_A SAM and SH3 domain-cont 99.3 1.7E-12 5.7E-17 98.4 5.3 70 118-189 15-86 (97)
30 2k4p_A Phosphatidylinositol-3, 99.3 1.5E-12 5.2E-17 96.9 3.7 66 119-186 19-86 (86)
31 3tad_C Liprin-beta-1; protein 99.3 6.6E-12 2.3E-16 110.3 7.0 73 116-189 10-83 (265)
32 3kka_C Ephrin type-A receptor 99.2 4.9E-12 1.7E-16 93.9 5.0 63 124-188 19-83 (86)
33 3hil_A Ephrin type-A receptor 99.2 5.4E-12 1.8E-16 93.0 4.8 61 123-185 20-82 (82)
34 1x40_A ARAP2; ASAP-related pro 99.2 3.4E-11 1.2E-15 89.7 7.3 62 127-190 16-79 (91)
35 2lmr_A ODIN, ankyrin repeat an 99.1 2.3E-11 7.9E-16 92.9 3.1 62 126-189 29-94 (101)
36 3sei_A Caskin-1; SAM domain, p 99.1 1.1E-10 3.9E-15 93.7 4.8 63 125-189 9-72 (149)
37 2l5y_A Stromal interaction mol 99.0 3.9E-11 1.3E-15 98.0 -0.3 66 118-185 75-144 (150)
38 3sei_A Caskin-1; SAM domain, p 99.0 7.5E-10 2.6E-14 88.9 7.1 60 127-188 80-141 (149)
39 2eap_A Lymphocyte cytosolic pr 99.0 3.3E-10 1.1E-14 85.7 4.6 69 114-184 12-81 (90)
40 2k60_A Protein (stromal intera 99.0 6.5E-11 2.2E-15 96.7 -0.4 61 119-179 76-140 (150)
41 2kiv_A Ankyrin repeat and ster 98.9 2.5E-10 8.4E-15 91.1 2.6 62 125-188 13-78 (148)
42 1v38_A SAM-domain protein sams 98.9 1E-09 3.6E-14 79.5 5.4 64 123-188 9-74 (78)
43 2kiv_A Ankyrin repeat and ster 98.9 1.9E-09 6.3E-14 86.0 5.0 60 124-184 86-147 (148)
44 3tac_B Liprin-alpha-2; transfe 98.8 6E-09 2E-13 94.2 7.8 69 120-188 35-105 (334)
45 3tad_C Liprin-beta-1; protein 98.7 1.8E-08 6.2E-13 88.5 7.2 70 121-192 87-157 (265)
46 2d3d_A VTS1 protein; RNA bindi 98.7 2E-08 7E-13 75.6 6.4 60 126-189 18-78 (88)
47 2b6g_A VTS1P; alpha-helix, pen 98.7 3.1E-08 1.1E-12 78.2 6.4 60 126-189 49-109 (119)
48 2es6_A VTS1P; SAM domain, prot 98.7 3.2E-08 1.1E-12 76.3 5.8 59 127-189 32-91 (101)
49 2y9u_A Tumor protein 63; apopt 98.5 3.4E-07 1.1E-11 65.7 7.2 60 128-189 6-66 (69)
50 2qar_B Telsam domain; polymer, 98.4 1.7E-07 6E-12 70.5 4.5 69 116-189 7-78 (93)
51 2y9t_A Tumor protein 63; apopt 98.4 4.5E-07 1.5E-11 67.2 6.3 61 128-190 8-69 (82)
52 1oxj_A RNA-binding protein sma 98.3 3.8E-07 1.3E-11 76.1 5.0 59 127-189 8-66 (173)
53 1ji7_A ETS-related protein TEL 98.1 1.8E-06 6.2E-11 64.5 4.1 68 116-188 7-77 (89)
54 1sv0_C Modulator of the activi 98.1 2.6E-06 8.9E-11 62.4 4.5 65 116-185 6-75 (82)
55 3idw_A Actin cytoskeleton-regu 97.9 1.5E-05 5E-10 58.2 5.2 47 139-186 19-65 (72)
56 3tac_B Liprin-alpha-2; transfe 97.8 2.5E-05 8.7E-10 70.7 6.6 64 125-189 161-226 (334)
57 2e8m_A Epidermal growth factor 97.6 0.00016 5.5E-09 55.5 6.7 63 124-193 34-97 (99)
58 1x66_A Friend leukemia integra 97.5 4E-05 1.4E-09 58.1 2.7 72 116-191 19-94 (98)
59 1wwu_A Hypothetical protein FL 97.4 0.00046 1.6E-08 52.9 7.0 60 124-189 24-84 (99)
60 2dkx_A SAM pointed domain-cont 97.4 0.00026 8.8E-09 53.5 5.4 73 116-193 19-94 (96)
61 1sxd_A GA repeat binding prote 97.2 0.00053 1.8E-08 51.3 5.5 68 116-189 18-88 (91)
62 1sv0_A ETS DNA-binding protein 97.2 0.00066 2.3E-08 50.2 5.8 69 116-189 5-76 (85)
63 2e8p_A ELF3 protein; cell-free 97.0 0.0011 3.9E-08 49.9 5.8 69 117-188 20-91 (92)
64 1sxe_A Transcriptional regulat 96.9 0.00052 1.8E-08 51.9 2.8 70 115-188 21-94 (97)
65 2ytu_A Friend leukemia integra 96.8 0.00067 2.3E-08 53.9 2.9 69 116-188 33-105 (128)
66 1dxs_A P53-like transcription 96.8 0.0025 8.4E-08 47.2 5.8 59 129-189 9-68 (80)
67 2jv3_A ETS1 proto-oncogene; ET 96.6 0.0012 4.2E-08 50.9 3.2 69 116-188 36-107 (110)
68 2qb0_B Telsam domain - lysozym 95.7 0.014 4.7E-07 49.7 5.6 68 117-189 8-78 (241)
69 2h80_A STAR-related lipid tran 82.9 0.69 2.4E-05 34.1 2.4 26 125-151 20-45 (81)
70 2dky_A RHO-GTPase-activating p 79.7 1.1 3.9E-05 33.6 2.7 56 125-186 22-83 (91)
71 2p2u_A HOST-nuclease inhibitor 68.4 5.8 0.0002 32.0 4.5 46 123-172 106-151 (171)
72 3hug_A RNA polymerase sigma fa 36.4 82 0.0028 21.5 5.5 54 129-189 31-85 (92)
73 2kz3_A Putative uncharacterize 30.2 1.2E+02 0.0041 21.7 5.6 46 137-182 10-57 (83)
74 2a2p_A Selenoprotein M, SELM p 27.3 26 0.00087 27.7 1.7 22 118-140 71-92 (129)
75 3vcf_A Probable integrase; cat 26.3 86 0.003 25.3 4.7 48 119-181 2-49 (163)
76 1or7_A Sigma-24, RNA polymeras 25.5 1.9E+02 0.0063 21.4 6.3 56 128-190 133-189 (194)
77 2o8x_A Probable RNA polymerase 21.3 1E+02 0.0036 19.2 3.6 45 140-189 18-63 (70)
No 1
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=99.87 E-value=6.7e-23 Score=153.65 Aligned_cols=74 Identities=34% Similarity=0.565 Sum_probs=66.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhCC-CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLP-GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~-Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
...++|..||++||++||+++. ||++|++.|++|+|||++||+|+++||++.||||+|||+||+++|++||...
T Consensus 9 ~~~~~v~~WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgiklGpalKi~~~I~~lk~~~ 83 (89)
T 1pk1_B 9 HLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNKVNGRD 83 (89)
T ss_dssp --CCCGGGCCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCCCHHHHHHHHHHHHHHC---
T ss_pred CCCCCchhCCHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCCCccHHHHHHHHHHHHHccc
Confidence 4578899999999999999874 7999999999999999999999999999899999999999999999998754
No 2
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=99.86 E-value=4.4e-22 Score=148.77 Aligned_cols=74 Identities=57% Similarity=1.003 Sum_probs=67.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
...+++..||++||++||+++.||++|++.|++|+|||++|+.|+++||+++|||++|+|+||+++|++||...
T Consensus 9 ~~~~~v~~Ws~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~I~~L~~~~ 82 (89)
T 1kw4_A 9 TDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIKEVR 82 (89)
T ss_dssp -CCCCGGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC---
T ss_pred CCCCCchhCCHHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 44678999999999999999769999999999999999999999999998899999999999999999998764
No 3
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=99.76 E-value=4.9e-19 Score=125.95 Aligned_cols=69 Identities=25% Similarity=0.478 Sum_probs=64.6
Q ss_pred CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
.++..||+++|++||.++ |+++|++.|++|+|||.+|+.|+.+|| +.||| ++|+|.+|+++|+.||...
T Consensus 2 ~~v~~Ws~~~V~~WL~~~-gl~~y~~~F~~~~i~g~~Ll~l~~~dL-~~lGI~~~g~r~kil~~i~~L~~~~ 71 (74)
T 2gle_A 2 HMVHEWSVQQVSHWLVGL-SLDQYVSEFSAQNISGEQLLQLDGNKL-KALGMTSSQDRALVKKKLKEMKMSL 71 (74)
T ss_dssp CCGGGCCSGGGHHHHHHT-TTHHHHHHHTTTTCCHHHHHTCCHHHH-HTTTCCCHHHHHHHHHHHHSHHHHH
T ss_pred CCcccCCHHHHHHHHHHC-CCHHHHHHHHHcCCCHHHHhhCCHHHH-HHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 357899999999999998 999999999999999999999999998 68999 5999999999999999764
No 4
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.9e-19 Score=133.26 Aligned_cols=73 Identities=26% Similarity=0.461 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhCCCChH--HHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 115 TPSLPNPLKWTVTEVCDFIRNLPGCAE--YVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 115 ~~~~snV~~WTvedV~ewL~sl~Gc~e--yaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
.....++..||++||++||..+ |+++ |++.|++|+|||.+|+.|+++|| ++||| ++|+|++|+++|+.||...
T Consensus 21 ~~~~~~v~~Ws~~~V~~WL~~l-gl~~~~y~~~F~~~~I~G~~Ll~Lt~~dL-keLGI~~~G~R~kil~~I~~Lr~~~ 96 (103)
T 2e8o_A 21 LELHPDYKTWGPEQVCSFLRRG-GFEEPVLLKNIRENEITGALLPCLDESRF-ENLGVSSLGERKKLLSYIQRLVQIH 96 (103)
T ss_dssp CCCCSCGGGCHHHHHHHHHHHH-TCCCHHHHHHHHHTTCCTTTTTTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHTTT
T ss_pred cccccChhhCCHHHHHHHHHHc-CCChHHHHHHHHHcCCCHHHHHhCCHHHH-HHcCCCCHHHHHHHHHHHHHHHHhH
Confidence 4557889999999999999998 9998 99999999999999999999999 58999 8999999999999999765
No 5
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=99.76 E-value=1e-18 Score=125.40 Aligned_cols=70 Identities=24% Similarity=0.368 Sum_probs=65.0
Q ss_pred CCCCCCHHHHHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001 120 NPLKWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 120 nV~~WTvedV~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~ 190 (202)
++..||+++|++||..+ .||++|++.|++|+|||++|+.|+.+|| +.||| ++|+|.+|+++|+.||....
T Consensus 2 ~v~~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL-~~lGI~~~g~r~~il~~I~~Lr~~~~ 73 (78)
T 3bs7_A 2 AVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSL-QRMGVTDNRDREAIWREIVKQRLKTD 73 (78)
T ss_dssp CGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHH-hHcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 57899999999999985 4899999999999999999999999999 58999 79999999999999998764
No 6
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=124.42 Aligned_cols=72 Identities=22% Similarity=0.502 Sum_probs=66.5
Q ss_pred CCCCCCCHHHHHHHHHhCC-CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhcc
Q psy2001 119 PNPLKWTVTEVCDFIRNLP-GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEG 191 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~-Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~ 191 (202)
.++..||+++|++||..+. |+++|++.|++|+|||++|+.|+.+|| +.||| ++|+|.+|+++|+.||....+
T Consensus 2 ~~v~~Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL-~~lGI~~~ghr~~il~~I~~L~~~~~~ 75 (80)
T 3bs5_B 2 EPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVSRIGHQELILEAVDLLCALNYG 75 (80)
T ss_dssp CCGGGCCHHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccccCCHHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHH-HHcCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 4688999999999999984 699999999999999999999999999 58999 799999999999999987644
No 7
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=99.74 E-value=2e-18 Score=131.19 Aligned_cols=71 Identities=15% Similarity=0.361 Sum_probs=65.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHH-hhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLME-AMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k-~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
....+|..||++||++||+++ ||++|++.| +| |||++||.||++||.+ .||| ++|+|+||+++|++||+..
T Consensus 12 ~~~~~v~~Ws~edV~~WL~~~-Gl~~Y~~~F-~~-IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~ 84 (97)
T 2d8c_A 12 RTMKEVVYWSPKKVADWLLEN-AMPEYCEPL-EH-FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEH 84 (97)
T ss_dssp SCCSCCSSCCTTHHHHHHHHT-TCTTTTTTT-TT-CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHS
T ss_pred CCCCchhhCCHHHHHHHHHHc-CCHHHHHHH-Hc-CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 446889999999999999997 999999999 67 9999999999999964 3999 8999999999999999875
No 8
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=125.05 Aligned_cols=70 Identities=23% Similarity=0.484 Sum_probs=64.3
Q ss_pred CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
+.++..||+++|++||.++ |+++|++.|++|+|||..|+.|+.+|| +.||| ++|+|+||+++|+.|+...
T Consensus 4 ~~~v~~Ws~~~V~~WL~~l-gl~~Y~~~F~~~~idg~~Ll~Lt~~dL-~~lGI~~~ghr~kIl~aI~~L~~~~ 74 (81)
T 3bq7_A 4 TRPVHLWGTEEVAAWLEHL-SLCEYKDIFTRHDIRGSGLLHLERRDL-KDLGVTKVGHMKRILCGIKELSRSS 74 (81)
T ss_dssp -CCGGGCCHHHHHHHHHHT-TCGGGHHHHHHTTCCHHHHTTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHC--
T ss_pred CCChhhCCHHHHHHHHHHC-CCHHHHHHHHHcCCCHHHHCcCCHHHH-hHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999998 999999999999999999999999999 47999 8999999999999998754
No 9
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=99.74 E-value=2.1e-18 Score=124.24 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 121 V~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
|..||+++|++||.++ |+++|++.|++|+|||.+|+.|+++|| +.||| ++|+|+||+++|+.||...
T Consensus 2 v~~Ws~~~V~~WL~~l-gl~~Y~~~F~~~~idg~~Ll~Lt~~dL-~~lGI~~~Ghr~kIl~aI~~l~~~~ 69 (76)
T 2f3n_A 2 LQLWSKFDVGDWLESI-HLGEHRDRFEDHEIEGAHLPALTKEDF-VELGVTRVGHRENIERALRQLDGSR 69 (76)
T ss_dssp GGGCCHHHHHHHHHHT-TCGGGHHHHHHTTCCGGGGGGCCHHHH-HHTTCCCHHHHHHHHHHHHTC----
T ss_pred hhhCCHHHHHHHHHHC-CCHHHHHHHHHcCCCHHHHccCCHHHH-HHcCCCChhHHHHHHHHHHHHHHHH
Confidence 5789999999999998 999999999999999999999999999 69999 5999999999999998754
No 10
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.74 E-value=1.5e-18 Score=129.12 Aligned_cols=72 Identities=19% Similarity=0.373 Sum_probs=66.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCC--hHHHHHHhhcCCChHHHhcCCHHHHH-HhhCC-CcchHHHHHHHHHHHHHH
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGC--AEYVEDFAMQEIDGQALMLLQAKHLM-EAMSM-KLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc--~eyaelFreneIDGeaLLlLteedL~-k~LGI-KLGprlKI~~~Ik~Lr~~ 188 (202)
....+|..||++||++||..+ |+ ++|++.|++|+|||++|+.||++||. ..||| .+|+|++|+++|+.||..
T Consensus 12 ~~~~~v~~Wt~~dV~~WL~~~-gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~ 87 (91)
T 1v85_A 12 LVHKAVDKWTTEEVVLWLEQL-GPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSG 87 (91)
T ss_dssp HHHSCGGGCCHHHHHHHHHHH-CGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcccCCHHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 445789999999999999998 99 99999999999999999999999996 34999 799999999999999964
No 11
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=124.07 Aligned_cols=75 Identities=21% Similarity=0.499 Sum_probs=68.1
Q ss_pred CCCCCCCCCHHHHHHHHHhCC-CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccC
Q psy2001 117 SLPNPLKWTVTEVCDFIRNLP-GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGA 192 (202)
Q Consensus 117 ~~snV~~WTvedV~ewL~sl~-Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~ 192 (202)
+..++..||+++|++||..+. |+++|++.|++|+|||++|+.|+.+|| ++||| ++|+|.+|+++|+.||....+.
T Consensus 4 ~~~~v~~Wt~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL-~~LGI~~~ghr~~il~~I~~L~~~~~~l 80 (83)
T 2ean_A 4 GSSGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVSRIGHQELILEAVDLLCALNSGP 80 (83)
T ss_dssp SCCSGGGCCTTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHH-HHHTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCccccCCHHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 356899999999999999984 479999999999999999999999999 58999 7999999999999999876543
No 12
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=99.73 E-value=5.1e-18 Score=130.15 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=66.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhC-CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 115 TPSLPNPLKWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 115 ~~~~snV~~WTvedV~ewL~sl-~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
.....++..||+++|++||..+ +||++|++.|++|+|||++|+.|+.+|| ++||| .+|+|.+|+++|+.||...
T Consensus 17 ~~~~~~v~~Wt~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL-k~LGI~~~GhR~kIl~~I~~Lr~~~ 92 (106)
T 3bs5_A 17 TTRPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSL-QRMGVTDNRDREAIWREIVKQRLKT 92 (106)
T ss_dssp ---CCCGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCCHHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHH-HhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3557789999999999999986 4799999999999999999999999999 58999 7999999999999999865
No 13
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.62 E-value=1.5e-16 Score=119.55 Aligned_cols=74 Identities=22% Similarity=0.438 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhCC-CChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001 114 QTPSLPNPLKWTVTEVCDFIRNLP-GCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 114 ~~~~~snV~~WTvedV~ewL~sl~-Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~ 190 (202)
......+|..||+++|++||+.+. ++.+| .|++|+|+|++|+.|+.+|| +.||| ++|+|.+|+++|+.||....
T Consensus 4 ~~~~~~~v~~Wt~~~V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL-~~LGI~~~Ghr~~Il~~I~~L~~~~~ 79 (91)
T 1wwv_A 4 GSSGMEPVETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSL-EALAVRSLGHQELILGGVEQLQALSS 79 (91)
T ss_dssp CSCSCCCTTTCCTTTHHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTG-GGGTCCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccccCCHHHHHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHH-HHcCCCcHhHHHHHHHHHHHHHHHhh
Confidence 345678899999999999999652 57789 79999999999999999999 58999 89999999999999998863
No 14
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=99.56 E-value=1.9e-15 Score=113.46 Aligned_cols=61 Identities=26% Similarity=0.488 Sum_probs=55.7
Q ss_pred HHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001 128 EVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 128 dV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~ 190 (202)
+|++||.++ +|++|++.|++|+|+| +.|+.|+.++| ++||| ++|+|++|+++|+.||....
T Consensus 17 ~v~~wL~si-~c~qY~~~F~eN~I~g~d~L~eLd~e~L-kElGI~kvGdRirIlk~vk~Lr~~~~ 79 (85)
T 1ow5_A 17 FVQLFLEEI-GCTQYLDSFIQCNLVTEEEIKYLDKDIL-IALGVNKIGDRLKILRKSKSFQRDKR 79 (85)
T ss_dssp HHHHHHHHH-SCTHHHHHHHHHTCCCHHHHHHCCHHHH-HHHTCCCHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHc-CChhHHHHHHHcCCCcHHHHHHcCHHHH-HHhCCCcccHHHHHHHHHHHHHHHHh
Confidence 999999998 9999999999999999 99999999999 69999 89999999999999987653
No 15
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=99.49 E-value=6.1e-14 Score=101.38 Aligned_cols=63 Identities=30% Similarity=0.439 Sum_probs=58.9
Q ss_pred HHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhccC
Q psy2001 128 EVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGA 192 (202)
Q Consensus 128 dV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~~~ 192 (202)
.|.+||.++ |+++|.+.|.+|+||+++|+.|+++|| +.|||++|||+||+++|+.+|.....+
T Consensus 4 ~v~~wL~~l-gL~~Y~~~F~~~~id~e~l~~lt~~DL-~~lGI~~G~RkkIl~ai~~~~~~~~~p 66 (74)
T 3k1r_B 4 PLETFLASL-HMEDFAALLRQEKIDLEALMLCSDLDL-RSISVPLGPREKILGAVRRRRQAMERP 66 (74)
T ss_dssp HHHHHHHTT-TCGGGHHHHHHTTCCHHHHTTCCHHHH-HHTTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHC-CCHHHHHHHHHcCcCHHHHhHCCHHHH-HHcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 589999998 999999999999999999999999999 699999999999999999999876643
No 16
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=99.46 E-value=6.7e-14 Score=102.71 Aligned_cols=69 Identities=9% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
.-+..|+.++|.+||.++ |+++|++.|.+++|| ++.|+.|+++|| +.||| ++|+|.||+++|+.||...
T Consensus 9 ~~~~~~~~~~V~~WL~~l-gL~qY~~~F~~~gid~~~~L~~lt~~DL-~~lGI~~~GhRkkIl~ai~~Lr~~~ 79 (82)
T 2kso_A 9 GLVPRGSHMTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDI-KRIGVRLPGHQKRIAYSLLGLKDQV 79 (82)
T ss_dssp ---------CHHHHHHHT-TCTTHHHHHHHTTCCSHHHHTTCCHHHH-HHHHCCCTTHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcchHHHHHHHC-CCHHHHHHHHHcCCChHHHHHhCCHHHH-HHCCCCChhHHHHHHHHHHHHHHHH
Confidence 346679999999999998 999999999999999 999999999999 68999 5799999999999999865
No 17
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=99.45 E-value=6.4e-14 Score=106.70 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=61.1
Q ss_pred CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~ 188 (202)
+....++..+|.+||.++ |+++|++.|.+|+|| |+.|+.|+.+|| +.||| ++|+|+||+++|+.||..
T Consensus 19 ~~m~~~~~~~V~~WL~~l-gL~qY~~~F~~~gid~~~~L~~Lt~eDL-keLGIt~~GhRkkIL~aI~~Lr~~ 88 (100)
T 2kg5_A 19 SHMAAPQDLDIAVWLATV-HLEQYADTFRRHGLATAGAARGLGHEEL-KQLGISATGHRKRILRLLQTGTEE 88 (100)
T ss_dssp -CCSCCTTCBHHHHHGGG-TCGGGHHHHHHTTCCBHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHTTTTTC
T ss_pred cccCCCCcChHHHHHHHC-CCHHHHHHHHHcCCChHHHHHhcCHHHH-HHCCCCChhHHHHHHHHHHHHHhc
Confidence 334456778999999998 999999999999999 999999999999 58999 689999999999999964
No 18
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.43 E-value=2e-13 Score=99.44 Aligned_cols=70 Identities=21% Similarity=0.391 Sum_probs=62.2
Q ss_pred HHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccCCCCCC
Q psy2001 126 VTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGAAGAPP 197 (202)
Q Consensus 126 vedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~~~~~~ 197 (202)
+.+|.+||.++ |+++|++.|.+|+|| ++.|+.|+++|| +.||| ++|+|+||+++|+.||.......+.-|
T Consensus 7 ~~~V~~WL~~l-gL~~Y~~~F~~~~~d~~~~l~~lt~~DL-~~lGI~~~GhrkkIl~ai~~l~~~~~~~~~~~~ 78 (81)
T 1ucv_A 7 GLTVGDWLDSI-RMGRYRDHFAAGGYSSLGMVLRMNAQDV-RALGITLMGHQKKILGSIQTMRAQLTSTQGSGP 78 (81)
T ss_dssp CSBHHHHHHHT-TCGGGHHHHHHTTCCBHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHSCCSSCSS
T ss_pred cchHHHHHHHC-CCHHHHHHHHHcCCChHHHHHHcCHHHH-HhCCCCChhHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 46799999998 999999999999999 899999999999 58999 579999999999999998765544443
No 19
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.6e-13 Score=101.50 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhcc
Q psy2001 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEG 191 (202)
Q Consensus 121 V~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~ 191 (202)
+...++.+|.+||.++ |+++|++.|.+|+|| ++.|+.|+++|| +.||| ++|+|+||+++|+.||.....
T Consensus 17 p~~~~~~~V~~WL~~l-gL~~Y~~~F~~~~~~~~~~L~~lt~~DL-~~lGI~~~GhRkkIl~ai~~l~~~~~~ 87 (99)
T 2eao_A 17 PDFTAFTTVDDWLSAI-KMVQYRDSFLTAGFTSLQLVTQMTSEDL-LRIGITLAGHQKKILNSIHSMRVQISQ 87 (99)
T ss_dssp CCTTSCCBHHHHHHTT-TCGGGHHHHHHHTCCBHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCcchHHHHHHHHHC-CcHHHHHHHHHcCCChHHHHhhCCHHHH-HHCCCCChhHHHHHHHHHHHHHHHhhc
Confidence 3344578999999998 999999999999999 999999999999 58999 579999999999999988743
No 20
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=101.45 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=62.6
Q ss_pred CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
..+..|++++|.+||.++ |+++|.+.|.+++|| ++.|+.|+++|| +.||| ++|+|+||+++|+.||...
T Consensus 18 ~~~~~~~~~~V~~WL~~l-gL~qY~~~F~~~g~d~~e~l~~lt~~DL-~~lGIt~~GHRkkIL~ai~~Lr~qm 88 (90)
T 3h8m_A 18 GTPDFTTFCSVGEWLQAI-KMERYKDNFTAAGYNSLESVARMTIEDV-MSLGITLVGHQKKIMSSIQTMRAQM 88 (90)
T ss_dssp -CCCCCCCSSHHHHHHHT-TCGGGHHHHHHTTCCSHHHHHTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhHHHHHHHHC-ChHHHHHHHHHcCCChHHHHhhCCHHHH-HHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345678999999999998 999999999999999 999999999999 58999 6899999999999998753
No 21
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5e-13 Score=98.67 Aligned_cols=66 Identities=9% Similarity=0.239 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 123 ~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~ 190 (202)
..++.+|.+||.++ |+++|++.|.+|+|| ++.|+.|+++|| +.||| ++|+|.||+++|+.||....
T Consensus 9 ~~~~~~V~~WL~~l-gL~~Y~~~F~~~~~~~~~~l~~lt~~dL-~~lGI~~~GhRkkIl~ai~~l~~~~~ 76 (88)
T 2e8n_A 9 GVPFRTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDV-KRIGVRLPGHQKRIAYSLLGLKDQVN 76 (88)
T ss_dssp CCSCSSHHHHHHHT-TCGGGHHHHHHHTCSSHHHHTTSCTTHH-HHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHC-CCHHHHHHHHHcCCChHHHHHhCCHHHH-HHCCCCChhHHHHHHHHHHHHHHhhc
Confidence 34468999999998 999999999999999 999999999999 58999 57999999999999998764
No 22
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=99.39 E-value=4.5e-13 Score=100.54 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=62.7
Q ss_pred CCCCCCCCCHHHHHHHH-HhCCCChH---HHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001 117 SLPNPLKWTVTEVCDFI-RNLPGCAE---YVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 117 ~~snV~~WTvedV~ewL-~sl~Gc~e---yaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~ 188 (202)
...++..||++||+.|+ .++ |+.+ .++.|++|+|+|..|+.|+-+|| |+|++ .+|.|++|+..|++||..
T Consensus 5 ~~~~v~~Wt~~~V~~W~~~~l-g~~d~d~~~~~f~~ndItG~vL~eL~leDl-KEL~i~s~~~r~~lk~~In~Lr~~ 79 (85)
T 1uqv_A 5 NNEDFSQWSVDDVITWCISTL-EVEETDPLCQRLRENDIVGDLLPELCLQDC-QDLCDGDLNKAIKFKILINKMRDS 79 (85)
T ss_dssp SCCCTTTCCHHHHHHHHHHHH-SSCTTSTHHHHHHHSCCCGGGHHHHHHHHH-HHTSSSCHHHHHHHHHHHHHHHHC
T ss_pred cccccccCCHHHHHHHHHHHh-CCCCccHHHHHHHHcCCchhhHHHcCHHHH-HHhCchHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999 664 6655 68999999999999999999999 68999 899999999999999843
No 23
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=99.39 E-value=5.2e-13 Score=96.98 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=58.8
Q ss_pred CHHHHHHHHHhCCCChHHHHHHhhcCC-ChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001 125 TVTEVCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 125 TvedV~ewL~sl~Gc~eyaelFreneI-DGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~ 190 (202)
+..+|.+||.++ |+++|.+.|.+|+| |++.|+.|+++||. .||| ++|+|.||+++|+.||....
T Consensus 10 ~~~~v~~WL~~l-gL~~Y~~~F~~~~~~~~~~l~~lt~~dL~-~lGI~~~GhrkkIl~ai~~l~~~~~ 75 (82)
T 1b4f_A 10 SFNTVDEWLEAI-KMGQYKESFANAGFTSFDVVSQMMMEDIL-RVGVTLAGHQKKILNSIQVMRAQMN 75 (82)
T ss_dssp CCSSHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHC-CCHHHHHHHHHcCCCCHHHHHhCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 467899999998 99999999999999 89999999999995 8999 57999999999999998753
No 24
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=99.38 E-value=1.7e-13 Score=99.99 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhCCCChHHHHHHhhcC-CChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 125 TVTEVCDFIRNLPGCAEYVEDFAMQE-IDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 125 TvedV~ewL~sl~Gc~eyaelFrene-IDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
+..+|.+||.++ |+++|++.|.+|+ |||+.|+.|+++|| +.||| ++|+|+||+++|+.||...
T Consensus 14 ~~~~V~~WL~~l-gL~~Y~~~F~~~~~~~~~~l~~lt~~dL-~~lGI~~~GhrkkIl~ai~~l~~~~ 78 (83)
T 2qkq_A 14 AFGSVGEWLRAI-KMGRYEESFAAAGFGSFELVSQISAEDL-LRIGVTLAGHQKKILASVQHMKSQA 78 (83)
T ss_dssp CCSSHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHTTC----
T ss_pred ccchHHHHHHHC-CCHHHHHHHHHcCCCcHHHHhhCCHHHH-HHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 367999999998 9999999999999 89999999999999 57999 5999999999999999765
No 25
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=99.38 E-value=9.7e-14 Score=105.46 Aligned_cols=78 Identities=18% Similarity=0.364 Sum_probs=56.2
Q ss_pred CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHh---cCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH-hccCC
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM---LLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA-AEGAA 193 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLL---lLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~-~~~~~ 193 (202)
-+...|++.+|.+||.++ |+++|++.|.+|+|||..++ .|+++|| ++||| ++|+|.||+++|+.||.. ..+..
T Consensus 15 ~~~~~w~~~~V~~WL~~i-gL~qY~~~F~~~gid~~~~l~~~~lt~~DL-~~lGI~~~GhRkkIl~ai~~L~~~~~~~~~ 92 (103)
T 2ke7_A 15 MNGPRCPVQTVGQWLESI-GLPQYENHLMANGFDNVQFMGSNVMEDQDL-LEIGILNSGHRQRILQAIQLLPKMRPIGHD 92 (103)
T ss_dssp --------CCTTHHHHHT-TCTTCHHHHHHTTCCCHHHHHTTCCCHHHH-HHHTCCCHHHHHHHHHHHHHSCC-------
T ss_pred ccccCCCHhHHHHHHHHC-CCHHHHHHHHHcCCCcHHHHhcccCCHHHH-hHCCCCCHHHHHHHHHHHHHHHhcccccCC
Confidence 456789999999999998 99999999999999999986 9999999 58999 699999999999999864 33455
Q ss_pred CCCCC
Q psy2001 194 GAPPP 198 (202)
Q Consensus 194 ~~~~~ 198 (202)
++.|.
T Consensus 93 ~~~P~ 97 (103)
T 2ke7_A 93 GYHPT 97 (103)
T ss_dssp -----
T ss_pred CCCCc
Confidence 55553
No 26
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=99.36 E-value=8e-13 Score=98.78 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHhCCCChHHHHHHhhcCC-ChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001 122 LKWTVTEVCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 122 ~~WTvedV~ewL~sl~Gc~eyaelFreneI-DGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~ 190 (202)
...++.+|.+||.++ |+++|.+.|.+|+| |++.|+.|+++|| +.||| ++|+|+||+.+|+.||....
T Consensus 22 ~~~~~~~V~~WL~~l-gL~~Y~~~F~~~g~~~~~~l~~lt~~DL-~~lGI~~~GhrkkIl~ai~~L~~~~~ 90 (94)
T 1b0x_A 22 EFSAVVSVGDWLQAI-KMDRYKDNFTAAGYTTLEAVVHMSQDDL-ARIGITAITHQNKILSSVQAMRTQMQ 90 (94)
T ss_dssp -CCSSCCHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHC-CcHHHHHHHHHcCCCCHHHHhhCCHHHH-HHCCCCChhHHHHHHHHHHHHHHHHh
Confidence 344678999999998 99999999999999 8999999999999 58999 57999999999999998753
No 27
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7.2e-12 Score=93.78 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhCCCChH-HHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHH
Q psy2001 113 PQTPSLPNPLKWTVTEVCDFIRNLPGCAE-YVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183 (202)
Q Consensus 113 ~~~~~~snV~~WTvedV~ewL~sl~Gc~e-yaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik 183 (202)
+.-..+.+.+.||++||++||+.+ |+++ |++.|++|.|||.-|+.|++++|.++||++-=.++||+.+|+
T Consensus 7 ~~w~pP~dLs~lSv~EVs~~Lr~i-gL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~ 77 (84)
T 2dkz_A 7 GPWQPPADLSGLSIEEVSKSLRFI-GLSEDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIMQFIN 77 (84)
T ss_dssp CCCCCCSCCSSCCHHHHHHHGGGT-CCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred CCCCCchhhhhcCHHHHHHHHHHc-CCcHHHHHHHHHHccchHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 345678999999999999999998 8987 579999999999999999999999899998888999999996
No 28
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.9e-13 Score=96.09 Aligned_cols=63 Identities=16% Similarity=0.386 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHh---cCCHHHHHHhhCC-CcchHHHHHHHHHHHHH
Q psy2001 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM---LLQAKHLMEAMSM-KLGPALKIVAKIDSMRQ 187 (202)
Q Consensus 123 ~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLL---lLteedL~k~LGI-KLGprlKI~~~Ik~Lr~ 187 (202)
.+++.+|.+||.++ |+++|.+.|.+|+|||..++ .|+++|| ++||| ++|+|.||+++|+.||.
T Consensus 9 ~~~~~~V~~WL~~l-gL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL-~~lGI~~~ghR~kIl~ai~~L~~ 75 (80)
T 2eam_A 9 RCPVQTVGQWLESI-GLPQYENHLMANGFDNVQFMGSNVMEDQDL-LEIGILNSGHRQRILQAIQLLPS 75 (80)
T ss_dssp CCCCCCHHHHHHHH-TCGGGHHHHHHTTCCCTTTSSSSSSCTTHH-HHSSCCCHHHHHHHHHHHHHSCC
T ss_pred CCChhHHHHHHHHC-CCHHHHHHHHHcCCChHHHHhhccCCHHHH-HHCCCCCHHHHHHHHHHHHHHhc
Confidence 57788999999998 99999999999999999876 9999999 58999 69999999999999985
No 29
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=98.36 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=64.1
Q ss_pred CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
...+..|.+.+|.+||..+ ++++|++.|.+|++|+ +.|..|+.+|| +.||| ++|+|+||+++|+.||...
T Consensus 15 ~~p~~~~~~~sV~eWL~~i-gL~qY~~~F~~~g~d~le~l~~lt~~DL-~~lGIt~~gHrkkIl~ai~~lr~~~ 86 (97)
T 2dl0_A 15 RKPVSPGCISSVSDWLISI-GLPMYAGTLSTAGFSTLSQVPSLSHTCL-QEAGITEERHIRKLLSAARLFKLPP 86 (97)
T ss_dssp CCCCCCSCCCSHHHHHHHH-TCGGGHHHHHHHTCCSTTSGGGCCHHHH-HHHTCCCHHHHHHHHHHHHTCCCCC
T ss_pred cCCCCccccCcHHHHHHHC-CCHHHHHHHHHcCCCcHHHHHhcCHHHH-HHCCCCCHHHHHHHHHHHHHHHccc
Confidence 4566779999999999998 9999999999999998 88999999999 58999 6999999999999998764
No 30
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=99.28 E-value=1.5e-12 Score=96.88 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=58.6
Q ss_pred CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHH
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMR 186 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr 186 (202)
.....|+..+|.+||.++ |+++|++.|.+|+|| .+.|..|+++|| ++||| .+|+|.||+.+|+.||
T Consensus 19 ~~~~~~~~~~V~eWL~~l-gL~qY~~~F~~~g~~~le~l~~lt~~DL-~~lGIt~~GHRkkIL~aI~~LK 86 (86)
T 2k4p_A 19 SHMSGLGEAGMSAWLRAI-GLERYEEGLVHNGWDDLEFLSDITEEDL-EEAGVQDPAHKRLLLDTLQLSK 86 (86)
T ss_dssp ---CCCCSCSSHHHHHTT-TCGGGHHHHHTTTCCCHHHHTTCCHHHH-HHTTCCCHHHHHHHHHHHHHCC
T ss_pred CcCCCCCcCcHHHHHHHC-CCHHHHHHHHHcCCChHHHHHhCCHHHH-HHCCCCCHHHHHHHHHHHHHcC
Confidence 445679999999999998 999999999999996 589999999999 58999 6899999999999875
No 31
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=99.26 E-value=6.6e-12 Score=110.29 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=65.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
.....+..|+.++|+.||+.+ |+++|++.|++|.+||..|+.||++||.+++|| +.++|+||+.+|++|+...
T Consensus 10 ~~~~p~~~W~~e~V~~WLe~~-GL~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el~~~~ 83 (265)
T 3tad_C 10 DLDMPFAKWTKEQVCSWLAEQ-GLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEE 83 (265)
T ss_dssp ----CGGGSCHHHHHHHHHHT-TCCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHCS
T ss_pred CCCCChhhCChHHHHHHHHHH-CHHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 345668899999999999997 999999999999999999999999999889999 7999999999999999753
No 32
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=99.25 E-value=4.9e-12 Score=93.92 Aligned_cols=63 Identities=10% Similarity=0.256 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 124 WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~ 188 (202)
.++++|.+||.++ |+++|.+.|.+++|| .+.|..|+++|| +.||| ++|+|.||+.+|+.||..
T Consensus 19 ~~~~~V~~WL~~l-gL~qY~~~F~~~g~d~le~l~~lt~~DL-~~LGIt~~GHRkkIL~ai~~Lr~q 83 (86)
T 3kka_C 19 VPFRTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDI-KRIGVRLPGHQKRIAYSLLGLKDQ 83 (86)
T ss_dssp ----CHHHHHHHT-TCGGGHHHHHHTTCCSHHHHHTCCHHHH-HHTTCCCHHHHHHHHHHHHHCC--
T ss_pred cchhHHHHHHHhC-CcHHHHHHHHHcCCChHHHHHhCCHHHH-HHCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578999999998 999999999999999 699999999999 58999 679999999999999864
No 33
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=99.24 E-value=5.4e-12 Score=92.95 Aligned_cols=61 Identities=18% Similarity=0.354 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHH
Q psy2001 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSM 185 (202)
Q Consensus 123 ~WTvedV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~L 185 (202)
..++++|.+||.++ |+++|.+.|.+++|| ++.|+.|+++|| +.||| ++|+|+||+++|+.|
T Consensus 20 ~~~~~~V~~WL~~l-gL~qY~~~F~~~g~~s~e~l~~lt~~DL-~~lGIt~~GHRkkIL~aiq~l 82 (82)
T 3hil_A 20 GIPYRTVSEWLESI-RMKRYILHFHSAGLDTMECVLELTAEDL-TQMGITLPGHQKRILCSIQGF 82 (82)
T ss_dssp CCCCSSHHHHHHHT-TCGGGHHHHHHTTCCSGGGGTTCCHHHH-HHTTCCCHHHHHHHHHHHHHC
T ss_pred CcchhHHHHHHHhC-CHHHHHHHHHHcCCChHHHHhcCCHHHH-HHCCCCCHHHHHHHHHHHHhC
Confidence 45678999999998 999999999999999 999999999999 68999 689999999999864
No 34
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.20 E-value=3.4e-11 Score=89.69 Aligned_cols=62 Identities=11% Similarity=0.281 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhc
Q psy2001 127 TEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 127 edV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~ 190 (202)
.+|.+||.++ ++++|++.|.+|+|+ .+.|..|+++|| +.||| ++|+|+||+++|+.||....
T Consensus 16 ~~V~~WL~~l-gL~qY~~~F~~~g~~~~~~l~~lt~~DL-~~lGI~~~GHrkkIl~ai~~L~~~~~ 79 (91)
T 1x40_A 16 VDIKDFLMSI-NLEQYLLHFHESGFTTVKDCAAINDSLL-QKIGISPTGHRRRILKQLQIILSKMQ 79 (91)
T ss_dssp CBHHHHHHTT-TCGGGHHHHHHHTCCBSGGGGGCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHC-CCHHHHHHHHHcCCCcHHHHhhcCHHHH-HHCCCCCHhHHHHHHHHHHHHHhhcC
Confidence 4799999998 999999999999996 689999999999 58999 69999999999999998764
No 35
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=99.11 E-value=2.3e-11 Score=92.94 Aligned_cols=62 Identities=11% Similarity=0.326 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHhhcCCChHHHh---cCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM---LLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 126 vedV~ewL~sl~Gc~eyaelFreneIDGeaLL---lLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
..+|.+||.++ |+++|++.|.+|+|||..++ .|+++|| ++||| ++|+|+||+.+|+.|+...
T Consensus 29 ~~~V~eWL~~L-gL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL-~eLGIt~~GHRkkIL~aI~~L~~~~ 94 (101)
T 2lmr_A 29 EQSVGEWLESI-GLQQYESKLLLNGFDDVHFLGSNVMEEQDL-RDIGISDPQHRRKLLQAARSLPKVK 94 (101)
T ss_dssp SCCHHHHHHHH-TCGGGHHHHHHTTCCCTTSTTTSCCCHHHH-HHHTCCCHHHHHHHHHHHHTSSSCC
T ss_pred cccHHHHHHHC-CCHHHHHHHHHcCCChHHHHhhccCCHHHH-HHCCCCCHHHHHHHHHHHHHHHhcc
Confidence 34899999998 99999999999999997665 5999999 58999 5899999999999998653
No 36
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=99.05 E-value=1.1e-10 Score=93.67 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 125 TVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 125 TvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
++++|++||..+ |+++|.+.|.++++||+.|+.|+.+|| +.||| ..|+|.||+.+|+.|+...
T Consensus 9 ~~~~V~~WL~~l-gL~~Y~~~F~~~g~d~~~l~~lt~~DL-~~lGIt~~gHrkkil~ai~~L~~~~ 72 (149)
T 3sei_A 9 SSEAVSQWLTAF-QLQLYAPNFISAGYDLPTISRMTPEDL-TAIGVTKPGHRKKIAAEISGLSIPD 72 (149)
T ss_dssp HHHHHHHHHHTT-TCGGGHHHHHHTTCCHHHHTTCCHHHH-HHTTCCSHHHHHHHHHHHHTCCCCC
T ss_pred cHHHHHHHHHHC-CcHHHHHHHHHcCCCHHHHccCCHHHH-HHcCCCCHHHHHHHHHHHHHHHhcc
Confidence 378999999998 999999999999999999999999999 58999 5899999999999998753
No 37
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=98.99 E-value=3.9e-11 Score=97.97 Aligned_cols=66 Identities=11% Similarity=0.347 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHH---HHHhhCC-CcchHHHHHHHHHHH
Q psy2001 118 LPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKH---LMEAMSM-KLGPALKIVAKIDSM 185 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteed---L~k~LGI-KLGprlKI~~~Ik~L 185 (202)
.+.|..||++||++||....++.+|+++|++|+|||.+|+.|+..+ |...||| ..++|-||. ++.|
T Consensus 75 ~s~V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~--lkal 144 (150)
T 2l5y_A 75 TSEVHNWTLEDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ--LKAL 144 (150)
T ss_dssp TSHHHHCCHHHHHHHHHHHTCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH--HHHH
T ss_pred cCcchhCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH--HHHH
Confidence 4568899999999999774489999999999999999999999864 3468999 689999988 4444
No 38
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=98.99 E-value=7.5e-10 Score=88.86 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=55.9
Q ss_pred HHHHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001 127 TEVCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 127 edV~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~ 188 (202)
.+|.+||.++ |+++|.+.|.+++|| ++.|..||.+|| +.||| ++|+|+||+.+|+.|+.-
T Consensus 80 ~~v~~WL~~i-gL~qY~~~F~~~g~d~~~~l~~lt~~dL-~~lGI~~~gHr~kIl~ai~~l~~~ 141 (149)
T 3sei_A 80 ANLAVWLSMI-GLAQYYKVLVDNGYENIDFITDITWEDL-QEIGITKLGHQKKLMLAVRKLAEL 141 (149)
T ss_dssp SCHHHHHHHT-TCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHc-CchhhHHHHHHCCCchHHHHhhCCHHHH-HHCCCCCHHHHHHHHHHHHHHHHH
Confidence 4799999998 999999999999999 799999999999 68999 699999999999999764
No 39
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.3e-10 Score=85.72 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhCCCChHHHHHHh-hcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHH
Q psy2001 114 QTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFA-MQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDS 184 (202)
Q Consensus 114 ~~~~~snV~~WTvedV~ewL~sl~Gc~eyaelFr-eneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~ 184 (202)
+-...++|..||+++|++||++. |+.+ ++.|. +|+|||.+||.|+++||.+.-.+.+---.||...|++
T Consensus 12 ~~ps~seV~~Wsp~~VadWLkk~-g~~~-cd~lv~Kh~IDG~~lL~LtE~Dlrk~Pkl~~p~~~k~~q~in~ 81 (90)
T 2eap_A 12 NVPFRSEVLGWDPDSLADYFKKL-NYKD-CEKAVKKYHIDGARFLNLTENDIQKFPKLRVPILSKLSQEINK 81 (90)
T ss_dssp CCCCHHHHTTCCTTTHHHHHHHT-TCHH-HHHHHHHTTCCHHHHHTCCHHHHTTSCTTTHHHHHHHHHHHHT
T ss_pred ccccCccccccCHHHHHHHHHHc-CCch-HHHHHHHhccCchhhhcccHHHhccCCccccHHHHHHHHHHhc
Confidence 34667889999999999999996 9988 88886 8999999999999999986555555556666666653
No 40
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=98.95 E-value=6.5e-11 Score=96.67 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=53.1
Q ss_pred CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHH---HHHhhCC-CcchHHHHH
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKH---LMEAMSM-KLGPALKIV 179 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteed---L~k~LGI-KLGprlKI~ 179 (202)
+.|..||+++|++||...-++.+|++.|++|+|||.+|+.|+.++ |...||| ..++|.||.
T Consensus 76 s~V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~I~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~ 140 (150)
T 2k60_A 76 SEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQ 140 (150)
T ss_dssp SHHHHCCHHHHHHHHHHHHCCTTHHHHHHHHCCSTTHHHHHSSCHHHHCSSCSCSCHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHHHhhccccHHHHHHhcCCCCHHHHHHHH
Confidence 457889999999999654479999999999999999999999985 4468999 589998886
No 41
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.94 E-value=2.5e-10 Score=91.11 Aligned_cols=62 Identities=16% Similarity=0.407 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhCCCChHHHHHHhhcCCChHHHh---cCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001 125 TVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM---LLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 125 TvedV~ewL~sl~Gc~eyaelFreneIDGeaLL---lLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~ 188 (202)
+.++|++||.++ |+++|++.|.++++||..++ .|+.+||. .||| +.|+|+||+.+|+.|+..
T Consensus 13 ~~~~V~~WL~~i-gL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~-~lGI~~~ghRkkil~ai~~L~~~ 78 (148)
T 2kiv_A 13 SVQTVGQWLESI-GLPQYENHLMANGFDNVQAMGSNVMEDQDLL-EIGILNSGHRQRILQAIQLLPKM 78 (148)
T ss_dssp -CCBHHHHHHHH-SCTTSHHHHHHTTTTBGGGGTSSCCCHHHHH-HHCCSSTTSHHHHHHHHHHCSCC
T ss_pred CcchHHHHHHHC-CCHHHHHHHHHcCCCHHHHhhhccCCHHHHH-HCCCCCHHHHHHHHHHHHHHHHh
Confidence 345799999998 99999999999999997777 89999995 9999 689999999999999865
No 42
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=98.93 E-value=1e-09 Score=79.52 Aligned_cols=64 Identities=11% Similarity=0.271 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 123 ~WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~ 188 (202)
......|.+||..+ ++++|++.|..+++|+ +.+..|+++|| ..||| ..|+|.||+.+|+.|+..
T Consensus 9 ~~~~~~V~eWL~~i-~L~~Y~~~F~~~gy~~~~~~~~lt~~DL-~~lGI~~~ghrkkil~ai~~L~~~ 74 (78)
T 1v38_A 9 RENHQTIQEFLERI-HLQEYTSTLLLNGYETLDDLKDIKESHL-IELNIADPEDRARLLSAAESLLSG 74 (78)
T ss_dssp CSSCCBHHHHHHTT-TCGGGHHHHHHHTCCBHHHHTTCCHHHH-HHTTTCCHHHHHHHHHHHHHHHSC
T ss_pred CCCcCcHHHHHHHC-CCHHHHHHHHHcCCCCHHHHhhcCHHHH-HHcCCCCHHHHHHHHHHHHHHHhc
Confidence 34667899999998 9999999999999975 77999999999 58999 689999999999999864
No 43
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.86 E-value=1.9e-09 Score=86.01 Aligned_cols=60 Identities=15% Similarity=0.352 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhCCCChHHHHHHhhcCCCh-HHHhcCCHHHHHHhhCC-CcchHHHHHHHHHH
Q psy2001 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSM-KLGPALKIVAKIDS 184 (202)
Q Consensus 124 WTvedV~ewL~sl~Gc~eyaelFreneIDG-eaLLlLteedL~k~LGI-KLGprlKI~~~Ik~ 184 (202)
++...|.+||.++ |+++|++.|.+++++| +.|..|+.+||.+.||| ++|+|+||+.+|++
T Consensus 86 ~~~~~v~~WL~~i-~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~ 147 (148)
T 2kiv_A 86 AHPTSVAEWLDSI-ELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGD 147 (148)
T ss_dssp CCCSSHHHHHHTT-TCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHC-CcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhh
Confidence 4556899999998 9999999999999988 89999999998789999 79999999999864
No 44
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=98.83 E-value=6e-09 Score=94.25 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=63.7
Q ss_pred CCCCCCHHHHHHHHHhCCCChH-HHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHH
Q psy2001 120 NPLKWTVTEVCDFIRNLPGCAE-YVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 120 nV~~WTvedV~ewL~sl~Gc~e-yaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~ 188 (202)
.+..|+.++||.||+..-|+.. |++.|++|.++|..|+.|+.+||.+++|| ..++|+||..+|+.++..
T Consensus 35 Pfs~W~~~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~~~ 105 (334)
T 3tac_B 35 PFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSL 105 (334)
T ss_dssp CGGGCCHHHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ChhhCCcHHHHHHHHHHhcChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 3778999999999998239987 99999999999999999999999999999 799999999999999864
No 45
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=98.72 E-value=1.8e-08 Score=88.48 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHhccC
Q psy2001 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAAEGA 192 (202)
Q Consensus 121 V~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~~~~ 192 (202)
...|+...|.+||..+ |+.+|.+.|.+|.|||..|..||.+||. .||| +.|+|.+|+.+|+.||...-+.
T Consensus 87 ~~~~d~~wv~~WL~~I-GL~QY~~~F~~~~iDg~~L~~LT~~DL~-~LGIt~~~HR~kil~aI~~L~~~~~d~ 157 (265)
T 3tad_C 87 YGKLDFNWVTRWLDDI-GLPQYKTQFDEGRVDGRMLHYMTVDDLL-SLKVVSVLHHLSIKRAIQVLRINNFEP 157 (265)
T ss_dssp GGGCCHHHHHHHHHHH-TCGGGHHHHHHHTCCHHHHHTCBHHHHH-HTTCCBHHHHHHHHHHHHHHHHTTTCT
T ss_pred ccccChHHHHHHHHHc-CcHHHHHHHHHcCCCHHHhcccCHHHHH-HcCCCcHHhHHHHHHHHHHHhhcCCCH
Confidence 3567788899999998 9999999999999999999999999996 8999 7999999999999999876443
No 46
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=98.72 E-value=2e-08 Score=75.58 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHHHHh
Q psy2001 126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 126 vedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr~~~ 189 (202)
..+|.+||+++ ++..|.+.|.. ++=+.|+.||++|| +.+|+. +|.|.||+.+|..||...
T Consensus 18 ~~~V~~WL~sL-rLhKY~~~F~~--~~~~~l~~LtdedL-~~~GVta~GaRrKil~aI~~lr~~~ 78 (88)
T 2d3d_A 18 LKNIPMWLKSL-RLHKYSDALSG--TPWIELIYLDDETL-EKKGVLALGARRKLLKAFGIVIDYK 78 (88)
T ss_dssp HTCHHHHHHHT-TCGGGHHHHTT--SCHHHHTTCCHHHH-HHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHc-ccchhHHHHhc--CCHHHHHHcCHHHH-HHcCCccHhHHHHHHHHHHHHHHHH
Confidence 34899999998 99999999965 68899999999999 589996 999999999999999765
No 47
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.1e-08 Score=78.17 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHHHHh
Q psy2001 126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 126 vedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr~~~ 189 (202)
..+|.+||+.+ ++..|++.| .+++-+.|+.|+++|| +.+|+. +|+|.||+.+|..||...
T Consensus 49 ~~dV~~WL~sL-rL~KY~~~F--~~~~~d~l~~LTeeDL-~~lGVta~GaRrKlL~AI~~Lr~~k 109 (119)
T 2b6g_A 49 LKNIPMWLKSL-RLHKYSDAL--SGTPWIELIYLDDETL-EKKGVLALGARRKLLKAFGIVIDYK 109 (119)
T ss_dssp HHCHHHHHHHH-TCHHHHHHH--TTSCHHHHTTCCHHHH-HHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHC-CChhHHHHH--ccCCHHHHHhcCHHHH-HHCCCCccccHHHHHHHHHHHHhhh
Confidence 57899999998 999999999 4589999999999999 589995 999999999999998764
No 48
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=98.65 E-value=3.2e-08 Score=76.29 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCC-cchHHHHHHHHHHHHHHh
Q psy2001 127 TEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 127 edV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIK-LGprlKI~~~Ik~Lr~~~ 189 (202)
.+|.+||+++ ++.+|.+.|.. ++=+.|+.||++|| +.+|+. +|.|.||+.+|..||...
T Consensus 32 ~dV~~WLksL-rLhKY~~~F~~--~~~~~l~~LTdedL-~~~GVta~GARrKiL~aI~~Lr~~k 91 (101)
T 2es6_A 32 KNIPMWLKSL-RLHKYSDALSG--TPWIELIYLDDETL-EKKGVLALGARRKLLKAFGIVIDYK 91 (101)
T ss_dssp TCHHHHHHTT-TCCCTHHHHTT--SCHHHHTTCCHHHH-HHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHc-cCcchHHHHcc--CCHHHHHhcCHHHH-HHcCCccHhHHHHHHHHHHHHHHHH
Confidence 5999999998 99999999966 68899999999999 589996 999999999999999865
No 49
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=98.49 E-value=3.4e-07 Score=65.75 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=53.9
Q ss_pred HHHHHHHhCCCChHHHHHHhhcC-CChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 128 EVCDFIRNLPGCAEYVEDFAMQE-IDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 128 dV~ewL~sl~Gc~eyaelFrene-IDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
-|.+||..+ +|+.|.+.|...+ .+-+.+..|+.+|| ..|||++|++.||++.|..||...
T Consensus 6 sv~~WLd~i-~m~~Y~d~F~~~g~~s~~~v~~lt~eDL-~~~GIt~ghqkkIl~siq~lr~~~ 66 (69)
T 2y9u_A 6 SIVSFLARL-GCSSCLDYFTTQGLTTIYQIEHYSMDDL-ASLKIPEQFRHAIWKGILDHRQLH 66 (69)
T ss_dssp BHHHHHHTT-TCGGGHHHHHTTTCCBHHHHTTCCHHHH-HHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHc-CChHHHHHHHHcCCCcHHHHHHcCHHHH-HhcCCChhhHHHHHHhHHHHHhcc
Confidence 378999998 8999999998766 56789999999999 589999999999999999999864
No 50
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=98.43 E-value=1.7e-07 Score=70.51 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=53.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHHH---HHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYV---EDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~eya---elFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
..+.++..||.+||..||.-. + .+|. -.|..++|||.+|+.|+++|++..++. .|+. |+..++.||...
T Consensus 7 ~l~~DP~~WS~~~V~~WL~w~-~-~ef~L~~i~~~~f~mdGk~Lc~Lt~edF~~~~p~-~Gdi--L~~hL~~Lk~~~ 78 (93)
T 2qar_B 7 HLRLQPIYWSRDDVAQWLKWA-E-NEFSLSPIDSNTFEMNGKALLLLTKEDFRYRSPH-SGDV--LYELLQHILKQR 78 (93)
T ss_dssp GGCSCGGGCCHHHHHHHHHHH-H-HHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHCTT-THHH--HHHHHHHHHHHH
T ss_pred CCCCChhhCCHHHHHHHHHHH-H-HhcCCCCcchhcCCCCHHHHHcCCHHHHhhhCCc-chHH--HHHHHHHHHHhc
Confidence 346789999999999999543 1 3332 225677899999999999999766664 5776 899999997654
No 51
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=98.41 E-value=4.5e-07 Score=67.16 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=54.9
Q ss_pred HHHHHHHhCCCChHHHHHHhhcC-CChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhc
Q psy2001 128 EVCDFIRNLPGCAEYVEDFAMQE-IDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAE 190 (202)
Q Consensus 128 dV~ewL~sl~Gc~eyaelFrene-IDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~ 190 (202)
-|.+||..+ +|+.|.+.|...+ .+-+.+..|+.+|| ..|||.+|++.||++.|..||....
T Consensus 8 SV~~WLd~i-~m~~Y~d~F~~~G~~sl~~V~~lt~eDL-~~mGIt~gHqkkIl~siq~lr~~~~ 69 (82)
T 2y9t_A 8 SIVSFLARL-GCSSCLDYFTTQGLTTIYQIEHYSMDDL-ASLKIPEQFRHAIWKGILDHRQLHE 69 (82)
T ss_dssp BHHHHHHHH-TCGGGHHHHHTTTCCBSGGGTTCCHHHH-HHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHc-CchHHHHHHHHcCCCcHHHHHhcCHHHH-HhcCCChhhHHHHHhhHHHHHHHhc
Confidence 488999998 8999999998766 56789999999999 5899999999999999999998763
No 52
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=98.34 E-value=3.8e-07 Score=76.06 Aligned_cols=59 Identities=19% Similarity=0.393 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 127 TEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 127 edV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
.+|..||+++ ++.+|++.|.. ++=+.++.||++||. .+|+..|.|.||+.+|++||.+.
T Consensus 8 ~dV~~WLksL-rLhKY~~~F~~--~~~e~~~~LTdedL~-~~GVT~GARrKIL~aIq~Lrer~ 66 (173)
T 1oxj_A 8 SGIGLWLKSL-RLHKYIELFKN--MTYEEMLLITEDFLQ-SVGVTKGASHKLALCIDKLKERA 66 (173)
T ss_dssp TTHHHHHHHT-TCGGGGGGGTT--CCHHHHTTCCHHHHH-HTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHc-ccchhHHHHcc--CCHHHHHhcCHHHHH-HCCCchHHHHHHHHHHHHHHHHh
Confidence 3899999998 99999999965 778899999999995 79998899999999999998765
No 53
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=98.13 E-value=1.8e-06 Score=64.54 Aligned_cols=68 Identities=18% Similarity=0.325 Sum_probs=50.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHHH---HHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYV---EDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~eya---elFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
..+.++..||.++|..||.-. ..+|. -.|...+|||++|+.|+++|+++.++. .|. .|+..+..|+..
T Consensus 7 ~l~~DP~~WS~~~V~~WL~w~--~~ef~L~~~~~~~f~mdGk~Lc~Ls~edF~~~~p~-~Gd--iL~~hL~~l~~~ 77 (89)
T 1ji7_A 7 HLRLQPIYWSRDDVAQWLKWA--ENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPH-SGD--ELYELLQHILKQ 77 (89)
T ss_dssp GGCSCGGGCCHHHHHHHHHHH--HHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCTT-THH--HHHHHHHHHHHC
T ss_pred CCCCChhhCCHHHHHHHHHHH--HHhcCCCCCchhcCCCCHHHHHcCCHHHHHhHcCC-chH--HHHHHHHHHHhC
Confidence 457889999999999999543 22332 235567899999999999999866664 355 466777777764
No 54
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=98.10 E-value=2.6e-06 Score=62.37 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCChHH-HH----HHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHH
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNLPGCAEY-VE----DFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM 185 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl~Gc~ey-ae----lFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~L 185 (202)
..+.++..||.++|..||.-. ..+| .+ .|...++||++|..|+++|+....+ ..|+. |+..++.+
T Consensus 6 ~i~~dP~~Ws~~~V~~WL~w~--~~e~~l~l~~~~~~~f~m~G~~Lc~ls~edF~~~~p-~~Gdi--L~~hL~~~ 75 (82)
T 1sv0_C 6 GLPLDPRDWTRADVWKWLINM--AVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVP-VGGKM--LYRDFRVR 75 (82)
T ss_dssp SSBSSGGGCCHHHHHHHHHHH--HHHHTCCCCTHHHHTCCSCHHHHHHCCHHHHHHHCT-TTHHH--HHHHHHHH
T ss_pred cCCCChhhCCHHHHHHHHHHH--HHHhCCCCCCCccccCCCCHHHHHhCCHHHHHhhCC-CchHH--HHHHHHHH
Confidence 347889999999999999632 2233 11 2556689999999999999986565 66776 88888844
No 55
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.5e-05 Score=58.15 Aligned_cols=47 Identities=13% Similarity=0.401 Sum_probs=43.8
Q ss_pred ChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001 139 CAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186 (202)
Q Consensus 139 c~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr 186 (202)
|..|+..|.++.||-..|..|+.+.| +.|||+.|+-++|++++++.-
T Consensus 19 c~rYA~~F~~~ri~e~mL~Dl~~~~L-r~LGi~eGDIIrVmk~l~~k~ 65 (72)
T 3idw_A 19 CQRYTINFDREQLTEDMMPDINNSML-RTLGLREGDIVRVMKHLDKKF 65 (72)
T ss_dssp HHHHHHHHHHTTCCGGGGGGCCHHHH-HHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHhhCCHHHH-HHcCCchhhHHHHHHHHHHHh
Confidence 66799999999999999999999999 589999999999999998873
No 56
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=97.82 E-value=2.5e-05 Score=70.68 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=58.0
Q ss_pred CHHHHH-HHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCC-CcchHHHHHHHHHHHHHHh
Q psy2001 125 TVTEVC-DFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 125 TvedV~-ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGI-KLGprlKI~~~Ik~Lr~~~ 189 (202)
+..=|. .||..| |+.+|.+.|.++.|||..|-.|+.+||...||| ...|+.+|...|..||...
T Consensus 161 dh~WV~~~WL~dI-GLpQY~~~F~~~~VDgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr~~~ 226 (334)
T 3tac_B 161 NHEWIGNEWLPSL-GLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLN 226 (334)
T ss_dssp CHHHHHHTHHHHT-TCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCcchhhhcccc-ChHHhHHHHHhcCcchhhhhhccHHHHHhccCCCcHHHHHHHHHHHHHhhhcC
Confidence 344567 799998 999999999999999999999999999879999 8999999999999998654
No 57
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.00016 Score=55.48 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHhCCCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhccCC
Q psy2001 124 WTVTEVCDFIRNLPGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGAA 193 (202)
Q Consensus 124 WTvedV~ewL~sl~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~~~~ 193 (202)
=+.+||..||.. ++|..| ++.| ..++|.-|+.|+.++|...+| ...|+|+.|.--|.....+.
T Consensus 34 Ssp~EV~~WL~~-kgFS~~tv~~L--g~ltGaqLl~Ltk~eL~~vCg----EG~RlysqL~vqk~~le~~~ 97 (99)
T 2e8m_A 34 STPEDVKTWLQS-KGFNPVTVNSL--GVLNGAQLFSLNKDELRTVCP----EGARVYSQITVQKAALSGPS 97 (99)
T ss_dssp CCTTHHHHHHHH-HTCCHHHHHHT--SSSCHHHHHHCCHHHHHHHCT----THHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHH-cCCCHHHHHHH--cCCCHHHHHcCCHHHHHHHCC----chHHHHHHHHHHHHHHhhcc
Confidence 468999999998 599997 8988 479999999999999987776 88899999988887765443
No 58
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=4e-05 Score=58.10 Aligned_cols=72 Identities=17% Similarity=0.357 Sum_probs=50.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhh-cCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhcc
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAM-QEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEG 191 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFre-neIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~~ 191 (202)
..+.++..||.++|.+||.=. .++... + +.. +.|||+.|..|+++|+.+..+...|+. |+..+..||...-+
T Consensus 19 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v-~-~~~F~~m~G~~LC~ls~edF~~~~~~~~Gdi--L~~hL~~Lk~~~s~ 94 (98)
T 1x66_A 19 IVPADPTLWTQEHVRQWLEWAIKEYSLMEI-D-TSFFQNMDGKELCKMNKEDFLRATTLYNTEV--LLSHLSYLRESSSG 94 (98)
T ss_dssp CCCSSGGGCCTTHHHHHHHHHHHHTTCCSC-C-GGGGTTCCHHHHHHCCHHHHHTTSCHHHHHH--HHHHHHHHHTCSSC
T ss_pred CCCCChhhcCHHHHHHHHHHHHHhcCCCCC-C-hhhCCCCCHHHHHcCCHHHHHHHcCCCchHH--HHHHHHHHHhcCCC
Confidence 557899999999999999422 133221 1 333 379999999999999864333234544 89999999986443
No 59
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=97.38 E-value=0.00046 Score=52.93 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHhCCCChHH-HHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 124 WTVTEVCDFIRNLPGCAEY-VEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 124 WTvedV~ewL~sl~Gc~ey-aelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
=+.+||..||.. +||..| ++.| ..++|.-|+.|+.++|...+| ....|+|+.|.--|...
T Consensus 24 Ssp~EV~~WL~~-kgFS~~tv~~L--g~ltGaqLf~Ltk~eL~~vCg---~EG~RlysqL~~qk~~l 84 (99)
T 1wwu_A 24 SGPDEVRAWLEA-KAFSPRIVENL--GILTGPQLFSLNKEELKKVCG---EEGVRVYSQLTMQKAFL 84 (99)
T ss_dssp CCHHHHHHHHHH-HTCCTTHHHHT--TSSCHHHHHTCCHHHHHHHHT---TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-cCCCHHHHHHH--cCCCHHHHHcCCHHHHHHHCc---chhHHHHHHHHHHHHHH
Confidence 469999999998 599997 8988 479999999999999988887 66778888888777764
No 60
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.00026 Score=53.46 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHhccC
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAAEGA 192 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~~~~ 192 (202)
..+.++..||.++|..||.-. .++.. .+ +....+||++|..|+++|+....+ ..|+ .|+.++..||....+.
T Consensus 19 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~-i~-~~~f~m~G~~LC~lskedF~~~~p-~~Gd--iL~~hL~~Lk~~~s~~ 93 (96)
T 2dkx_A 19 NITADPMDWSPSNVQKWLLWTEHQYRLPP-MG-KAFQELAGKELCAMSEEQFRQRSP-LGGD--VLHAHLDIWKSAASGP 93 (96)
T ss_dssp TCCSCGGGCCSSTHHHHHHHHHHHTTCCC-CH-HHHSSCCHHHHHHSCHHHHHHHCS-SSTH--HHHHHHHHHHHHHSCS
T ss_pred CCCCChhhCCHHHHHHHHHHHHHhcCCCC-CC-cccCCCCHHHHHhCCHHHHHHHcC-cchH--HHHHHHHHHHhccCCC
Confidence 568899999999999999432 13332 22 344569999999999999976444 3454 5899999999887665
Q ss_pred C
Q psy2001 193 A 193 (202)
Q Consensus 193 ~ 193 (202)
+
T Consensus 94 ~ 94 (96)
T 2dkx_A 94 S 94 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 61
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=97.19 E-value=0.00053 Score=51.32 Aligned_cols=68 Identities=15% Similarity=0.353 Sum_probs=50.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
..+.++..||.++|.+||.=. .++... .|..-.+||+.|..|+++|+....+ .|+ .|+..+..||...
T Consensus 18 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v--~~~~f~m~G~~LC~ls~edF~~~~p--~Gd--iL~~hL~~L~k~~ 88 (91)
T 1sxd_A 18 GIPYDPIHWSTDQVLHWVVWVMKEFSMTDI--DLTTLNISGRELCSLNQEDFFQRVP--RGE--ILWSHLELLRKYV 88 (91)
T ss_dssp TCCSSGGGCCHHHHHHHHHHHHHHTTCCCS--CSGGGCSCHHHHHHSCHHHHHHHCT--TCH--HHHHHHHHHHHTT
T ss_pred CCCCChhhCCHHHHHHHHHHHHHccCCCCC--ChhhCCCCHHHHHcCCHHHHHHHCC--Cch--HHHHHHHHHHHhh
Confidence 557899999999999999422 133221 1334489999999999999986554 365 7889999998754
No 62
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=97.18 E-value=0.00066 Score=50.22 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=49.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
..+.++..||.++|.+||.=. .++... .|..-.+||+.|..|+++|+....+ ..| -.|+..+..||...
T Consensus 5 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i--~~~~F~m~G~~LC~ls~edF~~~~p-~~G--diL~~hL~~Lk~~~ 76 (85)
T 1sv0_A 5 SLPSDPRLWSREDVLVFLRFCVREFDLPKL--DFDLFQMNGKRLCLLTRADFGHRCP-GAG--DVLHNVLQMLIIES 76 (85)
T ss_dssp TSCSSGGGCCHHHHHHHHHHHHHHTTCCCC--CGGGGCSCHHHHTTCCHHHHHHHST-TTH--HHHHHHHHHHHHHH
T ss_pred CCCCChhhCCHHHHHHHHHHHHHccCCCCC--ChhhCCCCHHHHHcCCHHHHHHHcC-Cch--HHHHHHHHHHHHhh
Confidence 347889999999999999421 133221 1233369999999999999986555 344 56788888887754
No 63
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=0.0011 Score=49.88 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=49.0
Q ss_pred CCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 117 SLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 117 ~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
...++..||.++|.+||.=. .++.--.-.|..-+|||++|-.|+++|++...+. .| --|+..+..||..
T Consensus 20 ~~~dP~~Ws~~~V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~mskedF~~~~p~-~G--diL~~hL~~L~~~ 91 (92)
T 2e8p_A 20 LGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP-LG--DQLHAQLRDLTSS 91 (92)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCHHHHHHHSGG-GH--HHHHHHHHHHHHC
T ss_pred cCCChhhcCHHHHHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCHHHHHHHcCC-cH--HHHHHHHHHHHhc
Confidence 36899999999999999422 1221001114445899999999999999866554 55 4678888888863
No 64
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=96.86 E-value=0.00052 Score=51.94 Aligned_cols=70 Identities=14% Similarity=0.292 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhc-CCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 115 TPSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQ-EIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 115 ~~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFren-eIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
-..+.++..||.++|..||.=. .++.. .+ +..- .+||+.|-.|+++|+....+...|+ .|+.++..||..
T Consensus 21 l~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~-i~-~~~F~~m~G~~LC~lt~edF~~~~p~~~Gd--iL~~hL~~Lk~~ 94 (97)
T 1sxe_A 21 VIVPADPTLWSTDHVRQWLEWAVKEYGLPD-VN-ILLFQNIDGKELCKMTKDDFQRLTPSYNAD--ILLSHLHYLRET 94 (97)
T ss_dssp SSSCSSTTSCCHHHHHHHHHHHHHHHTCSS-CC-GGGSTTCCHHHHTTCCHHHHTTTSCHHHHH--HHHHHHHHHTTS
T ss_pred hcCCcchhccCHHHHHHHHHHHHHhcCCCC-CC-HHhcCCCCHHHHHhCCHHHHHHHcCCCchH--HHHHHHHHHHhC
Confidence 3567899999999999999432 12221 11 3444 7999999999999986433323444 468888888764
No 65
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.78 E-value=0.00067 Score=53.91 Aligned_cols=69 Identities=14% Similarity=0.327 Sum_probs=50.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhc-CCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQ-EIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFren-eIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
..+.++..||.++|..||.=. .++.. .+ +..- .|||+.|..|+++|+....+.-.|+. |+..+..||..
T Consensus 33 ~IP~DP~~WS~~~V~~WL~Wa~~ef~L~~-id-~~~Fq~mnGk~LC~LskeDF~~~~p~~~GDi--L~~hL~~Lr~~ 105 (128)
T 2ytu_A 33 IVPADPTLWTQEHVRQWLEWAIKEYSLME-ID-TSFFQNMDGKELCKMNKEDFLRATTLYNTEV--LLSHLSYLRES 105 (128)
T ss_dssp SCCSCGGGCCTTHHHHHHHHHHHHTCCCS-CC-CGGGSSCCTTHHHHCCHHHHHHHSCHHHHHH--HHHHHHHHHHH
T ss_pred cCCcchhhCCHHHHHHHHHHHHHhcCCCC-CC-hHhCCCCCHHHHHcCCHHHHHHHcCCCchHH--HHHHHHHHHhc
Confidence 557899999999999999432 12321 11 3333 79999999999999975554335655 78999999987
No 66
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=96.78 E-value=0.0025 Score=47.25 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=49.8
Q ss_pred HHHHHHhCCCChHHHHHHhhcCCC-hHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 129 VCDFIRNLPGCAEYVEDFAMQEID-GQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 129 V~ewL~sl~Gc~eyaelFreneID-GeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
|+.||..+ ||..|++.|.++++. -..|=.++.+|| ..|.|+-.+|.||+..+.++|+..
T Consensus 9 v~s~Lt~L-Gc~~~Id~F~~qgl~~i~qL~~~~ledL-~~mkIpe~~R~kIWk~l~e~~q~~ 68 (80)
T 1dxs_A 9 LVSFLTGL-GCPNCIEYFTSQGLQSIYHLQNLTIEDL-GALKIPEQYRMTIWRGLQDLKQGH 68 (80)
T ss_dssp HHHHHHHT-TCTTSHHHHHTTTCCCHHHHHTCCHHHH-HHTTCCTTTHHHHHHHHHHC----
T ss_pred HHHHHHhc-CchHHHHHHHHcCcccchhhccCCHHHH-HhCCCCHHHHHHHHhhHHHhcccc
Confidence 78999998 999999999888764 567889999999 589999999999999999998754
No 67
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=96.59 E-value=0.0012 Score=50.92 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHH
Q psy2001 116 PSLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQA 188 (202)
Q Consensus 116 ~~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~ 188 (202)
..+.++..||.++|..||.=. .++... .|..-.+||+.|..|+.+|+....+.-.| -.|+.++..||..
T Consensus 36 ~ip~DP~~WS~~~V~~WL~W~~~ef~L~~v--~~~~F~m~G~~LC~ls~edF~~~~p~~~G--diL~~hL~~Lk~~ 107 (110)
T 2jv3_A 36 GIPKDPRQWTETHVRDWVMWAVNEFSLKGV--DFQKFCMSGAALCALGKECFLELAPDFVG--DILWEHLEILQKE 107 (110)
T ss_dssp TCCSSSTTCCHHHHHHHHHHHHHHHTCCCC--CTTTTCCCHHHHHHTHHHHHHHHSCHHHH--HHHHHHHHHHHHT
T ss_pred CCCCChHhCCHHHHHHHHHHHHHhcCCCCC--ChhcCCCCHHHHHhCCHHHHHHHcCCCcH--HHHHHHHHHHHHh
Confidence 457899999999999999422 122211 12334799999999999999754432234 4578899988874
No 68
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=95.71 E-value=0.014 Score=49.69 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=46.9
Q ss_pred CCCCCCCCCHHHHHHHHHhC---CCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHHHHHHHHHh
Q psy2001 117 SLPNPLKWTVTEVCDFIRNL---PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMRQAA 189 (202)
Q Consensus 117 ~~snV~~WTvedV~ewL~sl---~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~Ik~Lr~~~ 189 (202)
.+.+++.||.++|.+||.-. .++... .|..-.+||+.|..|+.+|++.... ..| -.|+.++..|+...
T Consensus 8 ~p~dP~~Wt~~~V~~Wl~w~~~~f~l~~~--~~~~f~~~G~~Lc~m~~~~F~~~~p-~~G--~iL~~hl~~l~k~~ 78 (241)
T 2qb0_B 8 LRLQPIYWSRDDVAQWLKWAENEFSLRPI--DSNTFEMNGKALLLLTKEDFRYRSP-HSG--DVLYELLQHILKQA 78 (241)
T ss_dssp GGSCGGGCCHHHHHHHHHHHHHHTTCSCC--CTTTTCSCHHHHTTCCHHHHHHHCT-TTH--HHHHHHHHHHHHTC
T ss_pred CCCChhhCCHHHHHHHHHHHHHhcCCCCC--CHHhcCCChHHHHHcCHHHHHhhcC-Ccc--hhhHHHHHHHHHhh
Confidence 46889999999999999532 122211 1333359999999999999975433 345 44578888776554
No 69
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=82.90 E-value=0.69 Score=34.12 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=22.4
Q ss_pred CHHHHHHHHHhCCCChHHHHHHhhcCC
Q psy2001 125 TVTEVCDFIRNLPGCAEYVEDFAMQEI 151 (202)
Q Consensus 125 TvedV~ewL~sl~Gc~eyaelFreneI 151 (202)
...+.|.||+.. ||.+|++.|.+..+
T Consensus 20 eA~eAC~WLRaa-GFPQYAqlyed~qF 45 (81)
T 2h80_A 20 EAKEACDWLRAA-GFPQYAQLYEDSQF 45 (81)
T ss_dssp HHHHHHHHHHHT-TCHHHHHTTTTTCC
T ss_pred HHHHHHHHHHHc-CCcHHHHHhhcccc
Confidence 467899999996 99999999988753
No 70
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=79.66 E-value=1.1 Score=33.57 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhCCCChHHHHHHhhcC--CChHH----HhcCCHHHHHHhhCCCcchHHHHHHHHHHHH
Q psy2001 125 TVTEVCDFIRNLPGCAEYVEDFAMQE--IDGQA----LMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186 (202)
Q Consensus 125 TvedV~ewL~sl~Gc~eyaelFrene--IDGea----LLlLteedL~k~LGIKLGprlKI~~~Ik~Lr 186 (202)
...+-|.||+.. ||.+|++.|.+.. ||=.. =-.|+++.|. .+-.|+.++|....+|
T Consensus 22 eA~eAC~WLRaa-GFPQYAqlyed~~FPIdi~~VkkDH~FLd~d~l~-----sL~RRl~tLN~Ca~Mk 83 (91)
T 2dky_A 22 EAKEACDWLRAT-GFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIE-----ALCRRLNTLNKCAVMK 83 (91)
T ss_dssp HHHHHHHHHHHH-TCTTHHHHHHTTCCSCCHHHHHHHTTTSCHHHHH-----HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHc-CChHHHHhcccccccccHHHhccCCCccCHHHHH-----HHHHHHHHHHHHhhhe
Confidence 356889999986 9999999999875 44332 2345555553 3345566665544443
No 71
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=68.36 E-value=5.8 Score=32.00 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCc
Q psy2001 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKL 172 (202)
Q Consensus 123 ~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKL 172 (202)
.|+.+.|.+||+++ |+.+|.. .+++||=.+|+...+..+. ..|+++
T Consensus 106 ~~~~~~vle~Lk~~-gl~~~Ir--~keevnK~al~~~~~~~~~-~~Gv~v 151 (171)
T 2p2u_A 106 KITKDMTLERLRQF-GISEGIR--IKEDVNKEAMQGWPDERLE-MVGLKR 151 (171)
T ss_dssp TCCHHHHHHHHHHT-TCCTTCC--CCCCCCHHHHTTSCHHHHH-HTTCCC
T ss_pred cCCHHHHHHHHHHC-CcHhhee--eccccCHHHHhcCccccee-eCCeEE
Confidence 39999999999996 8875433 2589999999999988774 788854
No 72
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=36.38 E-value=82 Score=21.48 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcc-hHHHHHHHHHHHHHHh
Q psy2001 129 VCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLG-PALKIVAKIDSMRQAA 189 (202)
Q Consensus 129 V~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLG-prlKI~~~Ik~Lr~~~ 189 (202)
+...|..+ -..+.++|.-.-+.| ++..++.+.||+..+ -+.++.+++++||...
T Consensus 31 l~~~l~~L--~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 31 IADALAQL--SAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp HHHHHHTS--CHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 44444544 245677776555555 688888899999765 4566778888888764
No 73
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=30.20 E-value=1.2e+02 Score=21.69 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=34.2
Q ss_pred CCChH-HHHHHhhcCCC-hHHHhcCCHHHHHHhhCCCcchHHHHHHHH
Q psy2001 137 PGCAE-YVEDFAMQEID-GQALMLLQAKHLMEAMSMKLGPALKIVAKI 182 (202)
Q Consensus 137 ~Gc~e-yaelFreneID-GeaLLlLteedL~k~LGIKLGprlKI~~~I 182 (202)
.|+.+ +++.|++++|. =.-++.++..+|++..|+..--...|.+.+
T Consensus 10 p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l 57 (83)
T 2kz3_A 10 PGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVL 57 (83)
T ss_dssp TTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 35544 57999988874 567899999999999998865555555554
No 74
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=27.28 E-value=26 Score=27.67 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.7
Q ss_pred CCCCCCCCHHHHHHHHHhCCCCh
Q psy2001 118 LPNPLKWTVTEVCDFIRNLPGCA 140 (202)
Q Consensus 118 ~snV~~WTvedV~ewL~sl~Gc~ 140 (202)
.-++..|+.++|.+||.+. ||-
T Consensus 71 ~I~Iekw~~d~I~efL~e~-GF~ 92 (129)
T 2a2p_A 71 RIPLSQMTRDEINALVQEL-GFY 92 (129)
T ss_dssp EEECSSSCHHHHHHHHHHH-TCC
T ss_pred EeecccCCHHHHHHHHHHc-CCc
Confidence 5678999999999999984 773
No 75
>3vcf_A Probable integrase; catalyzes site-specific integration, recombination; 2.70A {Sulfolobus virus 1} PDB: 4dks_A 3uxu_A
Probab=26.29 E-value=86 Score=25.35 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCCCCCCHHHHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcchHHHHHHH
Q psy2001 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAK 181 (202)
Q Consensus 119 snV~~WTvedV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGprlKI~~~ 181 (202)
.++.-||.|||.+||..+.+... ...+. =-|.-.-|+.+|.++.|++.
T Consensus 2 ~d~~V~t~eEl~~fl~~~k~~~~------------~~y~l---frLll~TG~R~gEaLaLl~~ 49 (163)
T 3vcf_A 2 ADIYIPTLEEIKRTLQLAKDYSE------------NVYFI---YRIALESGVRLSEILKVLKE 49 (163)
T ss_dssp --CCCCCHHHHHHHHHHHHTTCH------------HHHHH---HHHHHHHCCCHHHHHHHHHS
T ss_pred CCcccCCHHHHHHHHHHHHhcCc------------hHHHH---HHHHHHhCccHHHHHHHHcC
Confidence 46778999999999987632111 00111 11223689999999999875
No 76
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.53 E-value=1.9e+02 Score=21.41 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCChHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcch-HHHHHHHHHHHHHHhc
Q psy2001 128 EVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGP-ALKIVAKIDSMRQAAE 190 (202)
Q Consensus 128 dV~ewL~sl~Gc~eyaelFreneIDGeaLLlLteedL~k~LGIKLGp-rlKI~~~Ik~Lr~~~~ 190 (202)
.+.+.|..+ -..+.++|.-.-+.| ++.+++.+.||++.+- +.++.+++++||....
T Consensus 133 ~l~~~l~~L--~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 133 IVFRTIESL--PEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp HHHHHHHHS--CHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345566665 255777777666666 7888998999997655 6667788888887653
No 77
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=21.29 E-value=1e+02 Score=19.23 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=30.6
Q ss_pred hHHHHHHhhcCCChHHHhcCCHHHHHHhhCCCcch-HHHHHHHHHHHHHHh
Q psy2001 140 AEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGP-ALKIVAKIDSMRQAA 189 (202)
Q Consensus 140 ~eyaelFreneIDGeaLLlLteedL~k~LGIKLGp-rlKI~~~Ik~Lr~~~ 189 (202)
..+.++|.-.-++| ++..++.+.||+..+- +..+.+++++||...
T Consensus 18 ~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 18 TDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp HHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 44667776655666 6888898999996544 556667777777543
Done!