RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2001
(202 letters)
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 99.2 bits (247), Expect = 1e-27
Identities = 42/78 (53%), Positives = 56/78 (71%)
Query: 113 PQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKL 172
P W+V +V +FIR LPGC +YV+DF QEIDGQAL+ L+ KHL+ AM MKL
Sbjct: 6 VNGTDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKL 65
Query: 173 GPALKIVAKIDSMRQAAE 190
GPALKIVAK++S+++ +
Sbjct: 66 GPALKIVAKVESIKEVRD 83
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 95.3 bits (237), Expect = 4e-26
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 108 ESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGC-AEYVEDFAMQEIDGQALMLLQAKHLME 166
++ S P+ WT+ EV +I + A + + F EIDG+AL+ L ++ +M+
Sbjct: 3 KTRANSHLRS--QPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMK 60
Query: 167 AMSMKLGPALKIVAKIDSMRQAAE 190
M +KLGPALKI ++ +
Sbjct: 61 YMGLKLGPALKICNLVNKVNGRDH 84
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density,
SAM domain, shank, scaffolding protein, structural
protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB:
2f44_A
Length = 76
Score = 65.1 bits (159), Expect = 1e-14
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
W+ +V D++ ++ E+ + F EI+G L L + +E ++G I +
Sbjct: 4 LWSKFDVGDWLESI-HLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERAL 62
Query: 183 DSMRQAAE 190
+ +
Sbjct: 63 RQLDGSRR 70
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain,
alternative splicing, cytoplasm, membrane,
metal-binding, phorbol-ester binding; 2.90A {Homo
sapiens}
Length = 81
Score = 63.5 bits (155), Expect = 5e-14
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 120 NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKI 178
W EV ++ +L EY + F +I G L+ L+ + L + + + K+G +I
Sbjct: 6 PVHLWGTEEVAAWLEHL-SLCEYKDIFTRHDIRGSGLLHLERRDLKD-LGVTKVGHMKRI 63
Query: 179 VAKIDSMRQAAE 190
+ I + +++
Sbjct: 64 LCGIKELSRSSR 75
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 63.2 bits (154), Expect = 8e-14
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 123 KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAK 181
KW+ ++V D+++ L +Y+++F ++I G L+ + + L + ++G I+
Sbjct: 6 KWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEA 65
Query: 182 IDSMRQAAEG 191
+D + G
Sbjct: 66 VDLLCALNYG 75
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 62.8 bits (153), Expect = 9e-14
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 123 KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAK 181
KW+ ++V D+++ L +Y+++F ++I G L+ + + L + ++G I+
Sbjct: 10 KWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEA 69
Query: 182 IDSMRQAAEG 191
+D + G
Sbjct: 70 VDLLCALNSG 79
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 84
Score = 62.7 bits (152), Expect = 1e-13
Identities = 16/80 (20%), Positives = 30/80 (37%)
Query: 107 GESTGCPQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLME 166
G S + ++ EV +R + + + F ++IDG L+ L + L E
Sbjct: 1 GSSGSSGPWQPPADLSGLSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSE 60
Query: 167 AMSMKLGPALKIVAKIDSMR 186
+ KI+ I+
Sbjct: 61 DFKLSKLQVKKIMQFINGSG 80
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction,
protein binding; NMR {Rattus norvegicus}
Length = 74
Score = 62.3 bits (152), Expect = 1e-13
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVAK 181
+W+V +V ++ L +YV +F+ Q I G+ L+ L L + M + K
Sbjct: 6 EWSVQQVSHWLVGL-SLDQYVSEFSAQNISGEQLLQLDGNKLKA-LGMTSSQDRALVKKK 63
Query: 182 IDSMRQAAE 190
+ M+ + E
Sbjct: 64 LKEMKMSLE 72
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 58.3 bits (141), Expect = 1e-11
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 113 PQTPSLPNPLKWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK 171
P P+ W +VC F+R +++ EI G L L
Sbjct: 19 PGLELHPDYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSS 78
Query: 172 LGPALKIVAKIDSMRQA 188
LG K+++ I + Q
Sbjct: 79 LGERKKLLSYIQRLVQI 95
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 52.9 bits (127), Expect = 5e-10
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 123 KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KLGPALKIVA 180
WTV++V + R +Y + FA +I G+AL+ + L M + I
Sbjct: 5 LWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQR-MGVTDNRDREAIWR 63
Query: 181 KIDSMRQAAE 190
+I R +
Sbjct: 64 EIVKQRLKTD 73
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer,
SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 51.9 bits (124), Expect = 2e-09
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 113 PQTPSLPNPL-KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM 170
+ P + WTV++V + R +Y + FA +I G+AL+ + L M +
Sbjct: 14 RTKTTRPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQR-MGV 72
Query: 171 -KLGPALKIVAKIDSMRQAAE 190
I +I R +
Sbjct: 73 TDNRDREAIWREIVKQRLKTD 93
>3k1r_B Usher syndrome type-1G protein; protein-protein complex,
alternative splicing, coiled coil, deafness, hearing,
non-syndromic deafness, polymorphism; 2.30A {Homo
sapiens}
Length = 74
Score = 51.3 bits (123), Expect = 2e-09
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 126 VTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM 185
+ + F+ +L ++ ++ID +ALML L +S+ LGP KI+ +
Sbjct: 2 TSPLETFLASL-HMEDFAALLRQEKIDLEALMLCSDLDLRS-ISVPLGPREKILGAVRRR 59
Query: 186 RQAAE 190
RQA E
Sbjct: 60 RQAME 64
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 52.0 bits (124), Expect = 5e-09
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 75 DLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIR 134
+ +RED+ D H E+ + + L WTV EV ++
Sbjct: 39 EFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVY-------NWTVDEVVQWLI 91
Query: 135 NLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLG 173
+Y E F ++ G A+ L + L
Sbjct: 92 TYVELPQYEETFRKLQLSGHAMPRLAVTN-TTMTGTVLK 129
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 49.5 bits (118), Expect = 1e-08
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
WT +V ++R L + F ++ G+ L+ L + L LG I+ +
Sbjct: 13 TWTPGKVATWLRGL-DDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGV 71
Query: 183 DSMRQ 187
+ ++
Sbjct: 72 EQLQA 76
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 91
Score = 47.3 bits (112), Expect = 8e-08
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 123 KWTVTEVCDFIRNL-PGCAEYVEDFAMQEIDGQALMLLQAKHLM-EAMSMKLGPALK-IV 179
KWT EV ++ L P + Y + F + ++G+ L+ L + +++ + I+
Sbjct: 19 KWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVIL 78
Query: 180 AKIDSMRQAA 189
+++ +R
Sbjct: 79 TELERVRSGP 88
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 47.3 bits (112), Expect = 3e-07
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 75 DLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQTPSLPNPLKWTVTEVCDFIR 134
+ IRED+ D LH E+ + L WT+ + ++
Sbjct: 39 EFIREDMKYKDATNKHSHLHREDKHITIEDLWKRWKTSEVH-------NWTLEDTLQWLI 91
Query: 135 NLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLG 173
+Y ++F + G L + M +L
Sbjct: 92 EFVELPQYEKNFRDNNVKGTTLPRIAVHE-PSFMISQLK 129
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Length = 265
Score = 48.3 bits (114), Expect = 3e-07
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMK-LGPALKIVAK 181
KWT +VC ++ G Y+ I GQ L+ + L + + +K K+
Sbjct: 17 KWTKEQVCSWLAEQ-GLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLA 75
Query: 182 IDSMRQ 187
+ ++
Sbjct: 76 LQALGS 81
Score = 32.9 bits (74), Expect = 0.054
Identities = 11/69 (15%), Positives = 20/69 (28%)
Query: 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKI 178
+ G +Y F +DG+ L + L+ + + L I
Sbjct: 84 ETNYGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSI 143
Query: 179 VAKIDSMRQ 187
I +R
Sbjct: 144 KRAIQVLRI 152
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM
domain, pointed domain, SCM domain, STE50 regulator,
transferase; NMR {Saccharomyces cerevisiae} SCOP:
a.60.1.2 PDB: 1x9x_A
Length = 85
Score = 41.5 bits (97), Expect = 1e-05
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
+ V F+ + GC +Y++ F + + + L L+ K+G LKI+ K
Sbjct: 13 NDLPFVQLFLEEI-GCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKS 71
Query: 183 DSMRQ 187
S ++
Sbjct: 72 KSFQR 76
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 41.1 bits (96), Expect = 2e-05
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 114 QTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQ---ALMLLQAKHLMEAMSM 170
+ S N + V V ++ ++ G +Y D +++ + L+E +
Sbjct: 10 KAGSEMNGPRCPVQTVGQWLESI-GLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGIL 68
Query: 171 KLGPALKIVAKIDSMRQAAEGAAGAPPPASTA 202
G +I+ I + + P S A
Sbjct: 69 NSGHRQRILQAIQLLPKMRPIGHDGYHPTSVA 100
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 40.2 bits (94), Expect = 4e-05
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 107 GESTGCPQTPSLP--NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKH 163
G S P L P T V D++ + +Y + F Q + + ++
Sbjct: 1 GSSGSSGSQPLLDRSIPDFTAFTTVDDWLSAI-KMVQYRDSFLTAGFTSLQLVTQMTSED 59
Query: 164 LMEAMSMKLGPALKIVAKIDSMRQAAEGAAGAPPPASTA 202
L+ G KI+ I SMR + A ++
Sbjct: 60 LLRIGITLAGHQKKILNSIHSMRVQISQSPTAMASGPSS 98
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
a.60.1.2
Length = 81
Score = 39.8 bits (93), Expect = 4e-05
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKI 182
+ V D++ ++ Y + FA ++ + A+ + +G KI+ I
Sbjct: 5 SSGLTVGDWLDSI-RMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSI 63
Query: 183 DSMRQAAEGAAGAPP 197
+MR G+ P
Sbjct: 64 QTMRAQLTSTQGSGP 78
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing
protein 3; SAM domain, helix bundle, cell membrane, cell
projection, cytoplasm; NMR {Homo sapiens}
Length = 100
Score = 39.1 bits (91), Expect = 9e-05
Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 113 PQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMK 171
P + ++ ++ + +Y + F + A L + L +
Sbjct: 13 GLVPRGSHMAAPQDLDIAVWLATV-HLEQYADTFRRHGLATAGAARGLGHEELKQLGISA 71
Query: 172 LGPALKIVAKIDSMRQAAEGAAGAPPPAS 200
G +I+ + + EG+ ++
Sbjct: 72 TGHRKRILRLLQTGT--EEGSLDPKSDSA 98
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling,
angiogenesis, apopt ATP-binding, cataract; NMR {Homo
sapiens}
Length = 82
Score = 38.6 bits (90), Expect = 1e-04
Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKI 182
+ V +++ ++ +Y E F + ++ + + G +I +
Sbjct: 14 GSHMTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSL 72
Query: 183 DSMRQ 187
++
Sbjct: 73 LGLKD 77
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding,
transferase, tyrosine-protein kinase, signal, sterIle
alpha motif; 2.40A {Homo sapiens}
Length = 86
Score = 37.9 bits (88), Expect = 2e-04
Identities = 6/70 (8%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALK 177
V +++ ++ +Y E F + ++ + + G +
Sbjct: 14 LYFQGVPFRTVSEWLESI-KMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKR 72
Query: 178 IVAKIDSMRQ 187
I + ++
Sbjct: 73 IAYSLLGLKD 82
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 37.9 bits (88), Expect = 3e-04
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 107 GESTGCPQT-PSLP-----NPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLL 159
G TG + P+ +P V V D+++ + Y ++F +A++ +
Sbjct: 1 GSRTGSESSRPNTALLDPSSPEFSAVVSVGDWLQAI-KMDRYKDNFTAAGYTTLEAVVHM 59
Query: 160 QAKHLMEAMSMKLGPALKIVAKIDSMRQ 187
L + KI++ + +MR
Sbjct: 60 SQDDLARIGITAITHQNKILSSVQAMRT 87
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer;
1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Length = 82
Score = 36.7 bits (85), Expect = 5e-04
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALK 177
P + V +++ + +Y E FA + + + ++ G K
Sbjct: 4 TRPDYTSFNTVDEWLEAI-KMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKK 62
Query: 178 IVAKIDSMRQ 187
I+ I MR
Sbjct: 63 ILNSIQVMRA 72
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase,
membrane, nucleotide- binding, phosphorylation, repeat,
signal, transferase; 2.10A {Homo sapiens}
Length = 83
Score = 35.5 bits (82), Expect = 0.001
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIV 179
P V +++R + Y E FA + + + A+ L+ G KI+
Sbjct: 10 PHYSAFGSVGEWLRAI-KMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKIL 68
Query: 180 AKIDSMRQAAEGAAGAP 196
A + M+ ++ G P
Sbjct: 69 ASVQHMK--SQAKPGTP 83
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics,
structural genomics consortium, SGC, alternative
splicing, ATP-binding; 2.10A {Homo sapiens}
Length = 90
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 109 STGCPQTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEA 167
S+G P T V ++++ + Y ++F + +++ + + +M
Sbjct: 8 SSGRENLYFQGTPDFTTFCSVGEWLQAI-KMERYKDNFTAAGYNSLESVARMTIEDVMSL 66
Query: 168 MSMKLGPALKIVAKIDSMRQ 187
+G KI++ I +MR
Sbjct: 67 GITLVGHQKKIMSSIQTMRA 86
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 36.0 bits (82), Expect = 0.005
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 3/98 (3%)
Query: 107 GESTGCPQTPSLPNPLKWTVTEVCDFIRNLPG-CAEYVEDFAMQEIDGQALMLLQAKHLM 165
E + LP +W V ++ G A YV G + L +
Sbjct: 23 HELLEEARRKGLP-FAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQ 81
Query: 166 EAMSMK-LGPALKIVAKIDSMRQAAEGAAGAPPPASTA 202
+ + LK+ I M +A +
Sbjct: 82 REIGISNPLHRLKLRLAIQEMVSLTSPSAPPTSRTPSG 119
Score = 34.1 bits (77), Expect = 0.023
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 10/137 (7%)
Query: 54 IEGFVIQESDQPFPVNRGACFDLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCP 113
I+ V S P +R ++ ++ A AK EE G CP
Sbjct: 99 IQEMVSLTSPSAPPTSRTPSGNVWVTHEEMENLAAQAKTKESEE---------GSWAQCP 149
Query: 114 QTPSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSM-KL 172
+ + G +Y F +D + L L K L + M
Sbjct: 150 VFLQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDS 209
Query: 173 GPALKIVAKIDSMRQAA 189
+ I +++
Sbjct: 210 FHRTSLQYGIMCLKRLN 226
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, tandem, signaling protein, alternative
splicing, ANK repeat; NMR {Homo sapiens}
Length = 148
Score = 34.8 bits (79), Expect = 0.006
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALM---LLQAKHLMEAMSMKLGPALKIV 179
+ +V V ++ ++ G +Y D M +++ + L+E + G +I+
Sbjct: 11 RGSVQTVGQWLESI-GLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRIL 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.023
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 12/35 (34%)
Query: 154 QALMLLQAKHLMEAMSMKL-----GPALKIVAKID 183
QAL LQA S+KL PAL I A ++
Sbjct: 20 QALKKLQA-------SLKLYADDSAPALAIKATME 47
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling
protein; 2.40A {Homo sapiens} PDB: 3sen_A
Length = 149
Score = 32.7 bits (74), Expect = 0.033
Identities = 5/48 (10%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLME 166
+ V ++ Y +F D + + + L
Sbjct: 3 KTREGKSSEAVSQWLTAF-QLQLYAPNFISAGYDLPTISRMTPEDLTA 49
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding,
transferase, tyrosine-protein kinase, signal, sterIle
alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Length = 82
Score = 30.6 bits (69), Expect = 0.074
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKI 182
V +++ ++ Y+ F +D + ++ L A+ L + G +I+ I
Sbjct: 21 IPYRTVSEWLESI-RMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSI 79
Query: 183 DSM 185
Sbjct: 80 QGF 82
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 27.7 bits (61), Expect = 1.0
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 120 NPLKWTVTEVCDFIRNLPGCAEY---VEDFAMQEIDGQALMLLQAKHLMEA 167
P W+ T+V D+I +Y DF+ ++DG L + L
Sbjct: 23 QPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLV 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.6
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 29/108 (26%)
Query: 59 IQESDQPFP---VNRGACFDLIREDIGTDDGAPLAKKLHLEENVEDKKPLVGESTGCPQT 115
+ +Q F V+R + +R+ +L +NV + G G +T
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQ---------ALLELRPAKNVL----IDG-VLGSGKT 164
Query: 116 PSLPNPLKWTVTEVC---DFIRNLPGCAEYVEDFAMQEIDGQALMLLQ 160
W +VC + ++ + L +LQ
Sbjct: 165 --------WVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQ 203
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare
complex, VTI1A, VAMP4, transport protein; 2.50A {Homo
sapiens}
Length = 82
Score = 26.3 bits (58), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 149 QEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM 185
E++ QA+ML H +E+ +L +K +AK+ M
Sbjct: 40 GELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics
of infectious diseases; HET: NAD; 2.05A {Bacillus
anthracis str} PDB: 3i3o_A*
Length = 291
Score = 27.5 bits (62), Expect = 2.5
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 3 PPPPQGQFQQP-QQQHMQPKP 22
P Q Q +QP + M P P
Sbjct: 12 TMPAQHQNKQPGIESLMNPLP 32
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 26.1 bits (57), Expect = 3.4
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 119 PNPLKWTVTEVCDFIRNLPGCAEY---VEDFAMQEIDGQALMLL 159
+P+ W+ + V ++ +Y A QE+ G+ L +
Sbjct: 22 ADPMDWSPSNVQKWLLWT--EHQYRLPPMGKAFQELAGKELCAM 63
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha
motif, hydro regulator; 2.40A {Escherichia coli}
Length = 93
Score = 25.0 bits (54), Expect = 9.5
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 119 PNPLKWTVTEVCDFIRNLPGCAEY---VEDFAMQEIDGQALMLL 159
P+ W+ +V +++ E+ D E++G+AL+LL
Sbjct: 10 LQPIYWSRDDVAQWLKWA--ENEFSLSPIDSNTFEMNGKALLLL 51
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription,
signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Length = 91
Score = 24.9 bits (54), Expect = 9.9
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 119 PNPLKWTVTEVCDFIRNLPGCAEY---VEDFAMQEIDGQALMLL 159
+P+ W+ +V ++ + E+ D I G+ L L
Sbjct: 21 YDPIHWSTDQVLHWVVWV--MKEFSMTDIDLTTLNISGRELCSL 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.408
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,110,200
Number of extensions: 176940
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 50
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)