RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2001
(202 letters)
>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId:
7227]}
Length = 70
Score = 82.6 bits (204), Expect = 7e-22
Identities = 42/68 (61%), Positives = 54/68 (79%)
Query: 119 PNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKI 178
P W+V +V +FIR LPGC +YV+DF QEIDGQAL+ L+ KHL+ AM MKLGPALKI
Sbjct: 3 PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKI 62
Query: 179 VAKIDSMR 186
VAK++S++
Sbjct: 63 VAKVESIK 70
>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 63
Score = 70.8 bits (173), Expect = 2e-17
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 124 WTVTEVCDFIRNLPGC-AEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
WT+ EV +I + A + + F EIDG+AL+ L ++ +M+ M +KLGPALKI +
Sbjct: 1 WTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLV 60
Query: 183 DSM 185
+ +
Sbjct: 61 NKV 63
>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor
of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 61.6 bits (149), Expect = 1e-13
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKI 182
WT +V ++R L + F ++ G+ L+ L + L LG I+ +
Sbjct: 6 TWTPGKVATWLRGLD-DSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGV 64
Query: 183 DSMRQAAEG 191
+ ++ +
Sbjct: 65 EQLQALSSR 73
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3
(Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Length = 64
Score = 61.0 bits (148), Expect = 1e-13
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183
W+ +V D++ ++ E+ + F EI+G L L + +E ++G I +
Sbjct: 4 WSKFDVGDWLESI-HLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALR 62
Query: 184 SM 185
+
Sbjct: 63 QL 64
>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 50.0 bits (119), Expect = 3e-09
Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 116 PSLPNPLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAM--SMKLG 173
++ + W+ +V D++ EY E + GQ L+ L + + +
Sbjct: 6 RTMKEVVYWSPKKVADWLLENA-MPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSD 62
Query: 174 PALKIVAKIDSMRQAAE 190
+++ I++++
Sbjct: 63 NGQRLLDMIETLKMEHH 79
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 45.3 bits (107), Expect = 1e-07
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 125 TVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKID 183
V V D+++ + Y ++F +A++ + L + KI++ +
Sbjct: 3 AVVSVGDWLQAI-KMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQ 61
Query: 184 SMRQAAEGAAG 194
+MR + G
Sbjct: 62 AMRTQMQQMHG 72
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 45.0 bits (106), Expect = 1e-07
Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 123 KWTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALML-LQAKHLMEAMSMKLGPALKIVAK 181
+ + +F+ + EY + + + ++ HL+E ++++
Sbjct: 9 RENHQTIQEFLERI-HLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSA 67
Query: 182 IDSMRQ 187
+S+
Sbjct: 68 AESLLS 73
>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 74
Score = 40.8 bits (95), Expect = 6e-06
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 121 PLKWTVTEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIV 179
P + V +++ + +Y E FA + + + ++ G KI+
Sbjct: 1 PDYTSFNTVDEWLEAI-KMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKIL 59
Query: 180 AKIDSMRQ 187
I MR
Sbjct: 60 NSIQVMRA 67
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 36.1 bits (83), Expect = 3e-04
Identities = 7/65 (10%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 127 TEVCDFIRNLPGCAEYVEDFAMQEIDG-QALMLLQAKHLMEAMSMKLGPALKIVAKIDSM 185
++ DF+ ++ +Y+ F + + L + G +I+ ++ +
Sbjct: 9 VDIKDFLMSI-NLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQII 67
Query: 186 RQAAE 190
+
Sbjct: 68 LSKMQ 72
>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila
melanogaster [TaxId: 7227]}
Length = 62
Score = 33.7 bits (77), Expect = 0.001
Identities = 9/64 (14%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 124 WTVTEVCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKID 183
++ + ++++L +Y+E F + + + ++L+ ++++ + G + K+ ID
Sbjct: 3 VGMSGIGLWLKSL-RLHKYIELF--KNMTYEEMLLITEDF-LQSVGVTKGASHKLALCID 58
Query: 184 SMRQ 187
+++
Sbjct: 59 KLKE 62
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 32.7 bits (74), Expect = 0.004
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 129 VCDFIRNLPGCAEYVEDFAMQEI-DGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186
V F+ + GC +Y++ F + + + L L+ K+G LKI+ K S +
Sbjct: 3 VQLFLEEI-GCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQ 60
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 28.3 bits (63), Expect = 0.11
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 129 VCDFIRNLPGCAEYVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSM 185
+ F+ L GC +E F Q + + + A+ + + I + +
Sbjct: 2 LVSFLTGL-GCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQDL 57
>d2cb2a1 d.58.4.17 (A:2-308) Sulfur oxygenase reductase SOR
{Acidianus ambivalens [TaxId: 2283]}
Length = 307
Score = 25.6 bits (56), Expect = 4.2
Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 1 MAPPPPQGQFQQPQQQHMQPKPLIACYWDKPITTQATLPKTTALVKP-------QILTHV 53
+ P P + P+ ++ + ++ W + + L+ P ++L +
Sbjct: 226 LEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRV--LLYPELRQVHDEVLDTL 283
Query: 54 IEG 56
+ G
Sbjct: 284 VYG 286
>d2huha1 b.7.5.1 (A:81-227) Putative DNA mismatch repair protein
BT2179 {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 147
Score = 25.2 bits (55), Expect = 4.7
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 142 YVEDFAMQEIDGQALMLLQAKHLMEAMSMKLGPALKIVAKIDSMR 186
+E+F ++ + +Q + + PA+ + +ID+++
Sbjct: 69 LLEEFTKDVLNEMERVAVQLIAFKDGKPAAIKPAVSVELRIDTVK 113
>d1nara_ c.1.8.5 (A:) Seed storage protein {Vicia narbonensis,
Narbonin [TaxId: 3912]}
Length = 289
Score = 25.5 bits (55), Expect = 5.3
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 20 PKPLIACYWD--KPITTQATLPKTTALVKPQILTHVIEGFVIQESDQPFPVN 69
PKP+ Y TT P T + + H I GF I+ +
Sbjct: 1 PKPIFREYIGVKPNSTTLHDFP-TEIINTETLEFHYILGFAIESYYESGKGT 51
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 522
Score = 25.4 bits (55), Expect = 5.9
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 99 VEDKKPLV--GESTGCPQTPSLPNPLKWTVTEV 129
VED + + GE + + N L ++
Sbjct: 14 VEDSRTTIILGEDILPSKHVVMHNTLPHWREQL 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.408
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 754,665
Number of extensions: 33784
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 21
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)