BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2008
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IQW|A Chain A, Amppnp Complex Of C. Therm. Get3
pdb|3IQW|B Chain B, Amppnp Complex Of C. Therm. Get3
pdb|3IQX|A Chain A, Adp Complex Of C.Therm. Get3 In Closed Form
pdb|3IQX|B Chain B, Adp Complex Of C.Therm. Get3 In Closed Form
Length = 334
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/284 (48%), Positives = 175/284 (61%), Gaps = 16/284 (5%)
Query: 22 THNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEAXXXXXXXXXXX 81
HN+SDAF+QKF V G DNL+AMEIDPN S D+L+ +
Sbjct: 55 AHNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNG-----SMQDLLAGQTGDGDAGMGGV- 108
Query: 82 XINDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERG 141
V+ DL PGIDEAMS+AEVLK V +++ +VFDTAPTGHTLR L FP +E+
Sbjct: 109 ---GVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKA 165
Query: 142 LSKILALRNQIGPFLTQIGTLFGLADF----TSDNIAGKFEELLGNVREMNAQFRDPAKS 197
L+K+ L Q G L G L G T ++ K + L + E+NAQF+D +
Sbjct: 166 LAKVSQLSGQYGSLLN--GILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLT 223
Query: 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAK 257
TFVCVCI EFLSLYETER++QELA GIDT I+VNQL+F D C C+ R R Q K
Sbjct: 224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSD-CEQCTARRRMQKK 282
Query: 258 YLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
YLDQI +LY+E+F+V K+PL EE+RG ++E FS ML+ PF P
Sbjct: 283 YLDQIEELYDEEFNVVKMPLLVEEVRGKERLEKFSEMLIKPFVP 326
>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|E Chain E, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|F Chain F, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
Length = 348
Score = 254 bits (650), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 138/283 (48%), Positives = 178/283 (62%), Gaps = 12/283 (4%)
Query: 22 THNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIR-QTELSQDDILSDEAXXXXXXXXXX 80
HN+SDAF QKF V+G NL AMEIDPN Q L+ D D+
Sbjct: 65 AHNLSDAFGQKFGKEARLVDGYSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLG----- 119
Query: 81 XXINDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIER 140
+ +++ DL PG+DEAMS+AEVLK VK +++ V+VFDTAPTGHTLR L FP +E+
Sbjct: 120 --MGNMMQDLAFSIPGVDEAMSFAEVLKQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEK 177
Query: 141 GLSKILALRNQIGPFLTQI-GTLFGLADFTS-DNIAGKFEELLGNVREMNAQFRDPAKST 198
L+K+ L +Q GP L I G GL + D + K E L + E+N QF++P +T
Sbjct: 178 ALAKLSQLSSQFGPMLNSILGARGGLPGGQNIDELLQKMESLRETISEVNTQFKNPDMTT 237
Query: 199 FVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKY 258
FVCVCIAEFLSLYETER++QEL GIDT I+VNQL+F C C+ R + Q KY
Sbjct: 238 FVCVCIAEFLSLYETERMIQELTSYGIDTHAIVVNQLLFPKEG-SGCEQCNARRKMQKKY 296
Query: 259 LDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
L+QI +LY EDF+V ++PL EE+RG K+E FS MLV P+ P
Sbjct: 297 LEQIEELY-EDFNVVRMPLLVEEVRGKEKLEKFSEMLVHPYVP 338
>pdb|2WOO|A Chain A, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|B Chain B, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|C Chain C, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|D Chain D, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|E Chain E, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|F Chain F, Nucleotide-Free Form Of S. Pombe Get3
Length = 329
Score = 251 bits (641), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 127/277 (45%), Positives = 178/277 (64%), Gaps = 14/277 (5%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEAXXXXXXXXXXXX 82
HN+SDAF KF KV G DNL AMEIDPN+ E+++ +D+
Sbjct: 59 HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ---ADQ-------QNPNNP 108
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
++ ++ DL PGIDEA+++AE+LK +K M F V+FDTAPTGHTLR L+FP +E+ L
Sbjct: 109 LSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKAL 168
Query: 143 SKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCV 202
K+ L ++ GP + Q+G++ G+ + ++ GK E + N+ E+N QF++P +TFVCV
Sbjct: 169 GKLGGLSSRFGPMINQMGSIMGV-NANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCV 227
Query: 203 CIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQI 262
CI+EFLSLYETER++QEL IDT NI+VNQL+ + C C R + Q KYL QI
Sbjct: 228 CISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNT--TCPQCMARRKMQQKYLAQI 285
Query: 263 LDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPF 299
+LY EDFHV K+P E+RG +++FS MLV P+
Sbjct: 286 EELY-EDFHVVKVPQVPAEVRGTEALKSFSEMLVKPY 321
>pdb|3IO3|A Chain A, Get3 With Adp From D. Hansenii In Closed Form
Length = 348
Score = 233 bits (595), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 170/292 (58%), Gaps = 27/292 (9%)
Query: 22 THNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEAXXXXXXXXXXX 81
HN+SDAF QKF KV G+ NL MEIDP ++L Q
Sbjct: 59 AHNLSDAFCQKFGKDARKVEGLPNLSCMEIDPEAAMSDLQQ--------QASQYNNDPND 110
Query: 82 XINDVLNDLINGFPGIDEAMSYAEVLKLVK------------GMNFSVVVFDTAPTGHTL 129
+ +++D+ PGIDEA+S+ EVLK +K +++ ++FDTAPTGHTL
Sbjct: 111 PLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTL 170
Query: 130 RLLSFPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNA 189
R L P +E+ LSK L ++GP L+ +G +I K E+ NV E+N
Sbjct: 171 RFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGG------GQQQDIFEKLNEVQKNVSEVNE 224
Query: 190 QFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCS 249
QF +P +TF+CVCI+EFLSLYETER++QEL +D +I+VNQL+F +C C
Sbjct: 225 QFTNPELTTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCE 284
Query: 250 TRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
+R++ Q KYLDQ+ +LY ED+H+ K+PL EIRGV ++ FS+ L+ P++P
Sbjct: 285 SRWKMQKKYLDQMGELY-EDYHLVKMPLLGCEIRGVENLKKFSKFLLKPYDP 335
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
Length = 354
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 166/293 (56%), Gaps = 16/293 (5%)
Query: 18 SRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDI--LSDEAXXXXX 75
S HN+SDAF +KF KV G++NL MEIDP+ +++ + ++
Sbjct: 55 STDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQG 114
Query: 76 XXXXXXXINDVLNDLINGFPGIDEAMSYAEVLKLVK------GMNFSVVVFDTAPTGHTL 129
L DL PGIDEA+S+ EV+K +K G F V+FDTAPTGHTL
Sbjct: 115 DDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTL 174
Query: 130 RLLSFPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNA 189
R L P + + L K + N++GP L + G + +I+GK EL NV +
Sbjct: 175 RFLQLPNTLSKLLEKFGEITNKLGPMLN---SFMGAGNV---DISGKLNELKANVETIRQ 228
Query: 190 QFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDA-CALC 248
QF DP +TFVCVCI+EFLSLYETERL+QEL +D +IIVNQL+F + C C
Sbjct: 229 QFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288
Query: 249 STRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
R++ Q KYLDQI +LY EDFHV K+PL + EIRG+ + FS+ L + P
Sbjct: 289 QARWKMQKKYLDQIDELY-EDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNP 340
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 166/293 (56%), Gaps = 16/293 (5%)
Query: 18 SRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDI--LSDEAXXXXX 75
S HN+SDAF +KF KV G++NL MEIDP+ +++ + ++
Sbjct: 55 STDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQG 114
Query: 76 XXXXXXXINDVLNDLINGFPGIDEAMSYAEVLKLVK------GMNFSVVVFDTAPTGHTL 129
L DL PGIDEA+S+ EV+K +K G F V+FDTAPTGHTL
Sbjct: 115 DDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTL 174
Query: 130 RLLSFPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNA 189
R L P + + L K + N++GP L + G + +I+GK EL NV +
Sbjct: 175 RFLQLPNTLSKLLEKFGEITNKLGPMLN---SFMGAGNV---DISGKLNELKANVETIRQ 228
Query: 190 QFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDA-CALC 248
QF DP +TFVCVCI+EFLSLYETERL+QEL +D +IIVNQL+F + C C
Sbjct: 229 QFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288
Query: 249 STRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
R++ Q KYLDQI +LY EDFHV K+PL + EIRG+ + FS+ L + P
Sbjct: 289 QARWKMQKKYLDQIDELY-EDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNP 340
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 166/293 (56%), Gaps = 16/293 (5%)
Query: 18 SRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDI--LSDEAXXXXX 75
S HN+SDAF +KF KV G++NL MEIDP+ +++ + ++
Sbjct: 55 STDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQG 114
Query: 76 XXXXXXXINDVLNDLINGFPGIDEAMSYAEVLKLVK------GMNFSVVVFDTAPTGHTL 129
L DL PGIDEA+S+ EV+K +K G F V+FDTAPTGHTL
Sbjct: 115 DDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTL 174
Query: 130 RLLSFPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNA 189
R L P + + L K + N++GP L + G + +I+GK EL NV +
Sbjct: 175 RFLQLPNTLSKLLEKFGEITNKLGPMLN---SFMGAGNV---DISGKLNELKANVETIRQ 228
Query: 190 QFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDA-CALC 248
QF DP +TFVCVCI+EFLSLYETERL+QEL +D +IIVNQL+F + C C
Sbjct: 229 QFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288
Query: 249 STRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
R++ Q KYLDQI +LY EDFHV K+PL + EIRG+ + FS+ L + P
Sbjct: 289 QARWKMQKKYLDQIDELY-EDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNP 340
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 166/293 (56%), Gaps = 16/293 (5%)
Query: 18 SRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDI--LSDEAXXXXX 75
S HN+SDAF +KF KV G++NL MEIDP+ +++ + ++
Sbjct: 55 STDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQG 114
Query: 76 XXXXXXXINDVLNDLINGFPGIDEAMSYAEVLKLVK------GMNFSVVVFDTAPTGHTL 129
L DL PGIDEA+S+ EV+K +K G F V+FDTAPTGHTL
Sbjct: 115 DDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTL 174
Query: 130 RLLSFPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNA 189
R L P + + L K + N++GP L + G + +I+GK EL NV +
Sbjct: 175 RFLQLPNTLSKLLEKFGEITNKLGPMLN---SFMGAGNV---DISGKLNELKANVETIRQ 228
Query: 190 QFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDA-CALC 248
QF DP +TFVCVCI+EFLSLYETERL+QEL +D +IIVNQL+F + C C
Sbjct: 229 QFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288
Query: 249 STRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
R++ Q KYLDQI +LY EDFHV K+PL + EIRG+ + FS+ L + P
Sbjct: 289 QARWKMQKKYLDQIDELY-EDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNP 340
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 165/288 (57%), Gaps = 16/288 (5%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDI--LSDEAXXXXXXXXXX 80
HN+SDAF +KF KV G++NL MEIDP+ +++ + ++
Sbjct: 60 HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGS 119
Query: 81 XXINDVLNDLINGFPGIDEAMSYAEVLKLVK------GMNFSVVVFDTAPTGHTLRLLSF 134
L DL PGIDEA+S+ EV+K +K G F V+FDTAPTGHTLR L
Sbjct: 120 LLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQL 179
Query: 135 PQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDP 194
P + + L K + N++GP L + G + +I+GK EL NV + QF DP
Sbjct: 180 PNTLSKLLEKFGEITNKLGPMLN---SFMGAGNV---DISGKLNELKANVETIRQQFTDP 233
Query: 195 AKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDA-CALCSTRYR 253
+TFVCVCI+EFLSLYETERL+QEL +D +IIVNQL+F + C C R++
Sbjct: 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWK 293
Query: 254 TQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
Q KYLDQI +LY EDFHV K+PL + EIRG+ + FS+ L + P
Sbjct: 294 MQKKYLDQIDELY-EDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNP 340
>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|B Chain B, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|C Chain C, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|D Chain D, Adp-Alf4 Complex Of M. Therm. Trc40
Length = 324
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 152/284 (53%), Gaps = 17/284 (5%)
Query: 22 THNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEAXXXXXXXXXXX 81
H++SD+ ++ TPTK+ +NL+A+EIDP + E L ++A
Sbjct: 53 AHSLSDSLEREIGHTPTKIT--ENLYAVEIDPEVAMEEYQAK--LQEQAAMNPGMGLDM- 107
Query: 82 XINDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERG 141
+ D + D+ + PGIDEA ++ + L+ + + +V+FDTAPTGHTLRLLSFP+ ++
Sbjct: 108 -LQDQM-DMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSW 165
Query: 142 LSKILALRNQIGPFLTQIGTLFG-LADFTSDNIAGKFEELLGNVREMNAQ---FRDPAKS 197
+ K++ +R QIG + + D ++ A +++ +++NA DP ++
Sbjct: 166 VGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRA--LQDMEATKKQINAAREVMSDPERT 223
Query: 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAK 257
+F V I E +S+YE+ER ++ L K I +IVNQ++ + C C+ R + Q +
Sbjct: 224 SFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESD---CEFCNARRKLQQE 280
Query: 258 YLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
L QI + + D V ++PL +E +G+ +E + L EP
Sbjct: 281 RLKQIREKF-SDKVVAEVPLLKKEAKGIETLEKIAEQLYGEPEP 323
>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
Length = 349
Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 20/281 (7%)
Query: 22 THNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEAXXXXXXXXXXX 81
H++ D F Q+F PTKV G DNL+ +EIDP E +
Sbjct: 65 AHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKE---------KLKAQIEENP 115
Query: 82 XINDVLNDLINGF---PGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNI 138
+ ++L D + PG DE+ ++ LK + F VV+FDTAPTGHTLR L P+ +
Sbjct: 116 FLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVM 175
Query: 139 ERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFR----DP 194
++ ++K++ LR Q+ F+ + L D K E L ++E + R DP
Sbjct: 176 DKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDP 235
Query: 195 AKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRT 254
++ F V I E +S+ E+ER ++ L K GI +IVNQL+ C C R
Sbjct: 236 ERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQ---CDFCRARREL 292
Query: 255 QAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRML 295
Q K L+ I + + D + +PL E +G+ ++ +++L
Sbjct: 293 QLKRLEMIKEKF-GDKVIAYVPLLRTEAKGIETLKQIAKIL 332
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 111/289 (38%), Gaps = 58/289 (20%)
Query: 24 NISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTE-----------LSQDDILSDEAXX 72
N+ F+Q +T + + L A+EIDP + + DD++S
Sbjct: 49 NVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSS---- 104
Query: 73 XXXXXXXXXXINDVLNDL----INGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHT 128
IN+ L+ I F ++ A +L F ++FDTAPTGHT
Sbjct: 105 ----------INEQLSGACTTEIAAFDEFTGLLTDASLLT-----RFDHIIFDTAPTGHT 149
Query: 129 LRLLSFPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMN 188
+RLL P G N G + +G + GL + + A E L
Sbjct: 150 IRLLQLP-----GAWSSFIDSNPEG--ASCLGPMAGL-EKQREQYAYAVEAL-------- 193
Query: 189 AQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALC 248
DP ++ V V + +L E R ELA G+ + +++N ++ + + +
Sbjct: 194 ---SDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAA 250
Query: 249 STRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVT 297
+ R Q + DL L LQ + GV+ A SR+L T
Sbjct: 251 AIWEREQEALANLPADL--AGLPTDTLFLQPVNMVGVS---ALSRLLST 294
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 38/199 (19%)
Query: 95 PGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGP 154
P +E + ++++ VV DTAPTGHTL LL R ++K + + G
Sbjct: 421 PCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKM---GEKGH 477
Query: 155 FLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETE 214
F T + L +DP ++ + V + E + E
Sbjct: 478 FTTPMMLL-----------------------------QDPERTKVLLVTLPETTPVLEAA 508
Query: 215 RLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYEEDF-HVT 273
L +L + GI I+N S S+ R R Q + L QI + + V
Sbjct: 509 NLQADLERAGIHPWGWIINN----SLSIADTRSPLLRMRAQ-QELPQIESVKRQHASRVA 563
Query: 274 KLPLQSEEIRGVAKVEAFS 292
+P+ + E G+ K++ +
Sbjct: 564 LVPVLASEPTGIDKLKQLA 582
>pdb|3IGF|A Chain A, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
pdb|3IGF|B Chain B, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
Length = 374
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 8/157 (5%)
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
I +V + PG D A++ + + + +V+D TLR L P+++ +
Sbjct: 93 IKEVYGQELVVLPGXDSALALNAIREYDASGKYDTIVYDGTGDAFTLRXLGLPESLSWYV 152
Query: 143 SKI--LALRNQIG------PFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDP 194
+ L + + +G P + + + F ++T+DN A ++ + + DP
Sbjct: 153 RRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADP 212
Query: 195 AKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNII 231
+ V A+ L + L + G+ +I
Sbjct: 213 KRVAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVI 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,037,915
Number of Sequences: 62578
Number of extensions: 299944
Number of successful extensions: 753
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 17
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)