Query psy2008
Match_columns 311
No_of_seqs 137 out of 1324
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:51:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iqw_A Tail-anchored protein t 100.0 9.2E-53 3.1E-57 397.8 24.7 289 3-303 36-328 (334)
2 3io3_A DEHA2D07832P; chaperone 100.0 8.8E-52 3E-56 393.0 19.6 285 3-303 38-337 (348)
3 3ug7_A Arsenical pump-driving 100.0 1.1E-48 3.6E-53 372.0 28.9 297 3-311 46-349 (349)
4 3zq6_A Putative arsenical pump 100.0 7.1E-48 2.4E-52 362.6 30.3 287 3-302 34-324 (324)
5 2woo_A ATPase GET3; tail-ancho 100.0 2.2E-45 7.5E-50 346.5 25.3 284 3-301 39-323 (329)
6 2woj_A ATPase GET3; tail-ancho 100.0 2.7E-44 9.2E-49 342.4 25.6 287 3-301 38-340 (354)
7 3igf_A ALL4481 protein; two-do 100.0 4E-45 1.4E-49 349.8 13.8 255 3-295 22-286 (374)
8 1ihu_A Arsenical pump-driving 100.0 7.1E-34 2.4E-38 286.7 15.1 262 3-295 28-295 (589)
9 1ihu_A Arsenical pump-driving 100.0 3E-29 1E-33 252.9 17.3 237 3-293 347-583 (589)
10 3la6_A Tyrosine-protein kinase 98.8 1.7E-08 5.8E-13 92.7 9.3 41 198-238 227-267 (286)
11 3kjh_A CO dehydrogenase/acetyl 98.7 7.1E-08 2.4E-12 84.9 11.6 41 197-237 155-195 (254)
12 1wcv_1 SOJ, segregation protei 98.7 1.5E-07 5.2E-12 84.2 11.9 41 198-238 136-182 (257)
13 2ph1_A Nucleotide-binding prot 98.6 2.3E-07 7.9E-12 83.4 12.4 41 197-237 154-194 (262)
14 3bfv_A CAPA1, CAPB2, membrane 98.6 2.2E-08 7.4E-13 91.2 5.4 41 198-238 217-257 (271)
15 3cio_A ETK, tyrosine-protein k 98.6 1.9E-08 6.5E-13 92.9 4.1 41 198-238 239-279 (299)
16 3end_A Light-independent proto 98.6 8.5E-08 2.9E-12 88.1 8.4 41 197-237 181-225 (307)
17 2oze_A ORF delta'; para, walke 98.6 1.1E-06 3.7E-11 80.2 14.6 58 197-267 178-241 (298)
18 3ea0_A ATPase, para family; al 98.6 1.6E-07 5.5E-12 82.7 8.8 42 197-238 142-185 (245)
19 1g3q_A MIND ATPase, cell divis 98.5 1E-06 3.5E-11 77.3 11.8 42 197-238 135-176 (237)
20 3pg5_A Uncharacterized protein 98.5 1.1E-06 3.8E-11 83.0 12.4 28 3-30 22-49 (361)
21 1hyq_A MIND, cell division inh 98.4 3.8E-06 1.3E-10 74.9 14.7 41 198-238 135-175 (263)
22 4dzz_A Plasmid partitioning pr 98.4 3.6E-06 1.2E-10 71.8 12.5 39 198-238 100-143 (206)
23 3k9g_A PF-32 protein; ssgcid, 98.2 1.1E-05 3.9E-10 72.1 12.0 38 197-235 168-207 (267)
24 2afh_E Nitrogenase iron protei 98.2 8.9E-06 3.1E-10 73.8 11.5 40 197-236 145-188 (289)
25 3q9l_A Septum site-determining 98.2 3.4E-06 1.2E-10 74.8 8.3 41 197-237 137-185 (260)
26 1cp2_A CP2, nitrogenase iron p 98.1 1.1E-05 3.8E-10 72.0 10.6 41 197-237 142-186 (269)
27 3ez2_A Plasmid partition prote 98.1 3.5E-06 1.2E-10 80.3 6.4 24 9-32 141-164 (398)
28 3fwy_A Light-independent proto 98.0 5.9E-06 2E-10 76.7 6.8 41 197-237 188-232 (314)
29 3ez9_A Para; DNA binding, wing 98.0 6.1E-06 2.1E-10 78.8 5.5 24 9-32 144-167 (403)
30 3cwq_A Para family chromosome 97.9 6.5E-05 2.2E-09 65.1 11.0 40 198-238 93-133 (209)
31 3fkq_A NTRC-like two-domain pr 97.6 8.8E-05 3E-09 70.1 7.7 30 3-32 164-193 (373)
32 1byi_A Dethiobiotin synthase; 97.4 0.0009 3.1E-08 57.7 9.9 67 198-279 140-207 (224)
33 3of5_A Dethiobiotin synthetase 97.1 0.0028 9.7E-08 55.8 10.0 81 197-296 141-222 (228)
34 2xxa_A Signal recognition part 96.9 0.004 1.4E-07 60.1 10.5 22 3-24 120-142 (433)
35 3fgn_A Dethiobiotin synthetase 96.9 0.0072 2.5E-07 54.1 11.3 85 197-298 158-243 (251)
36 1j8m_F SRP54, signal recogniti 96.8 0.011 3.7E-07 54.1 11.4 38 197-237 214-251 (297)
37 2xj4_A MIPZ; replication, cell 96.2 0.0023 8E-08 57.8 3.0 30 3-32 25-55 (286)
38 3qxc_A Dethiobiotin synthetase 95.5 0.04 1.4E-06 48.9 7.9 41 197-238 162-202 (242)
39 3dm5_A SRP54, signal recogniti 95.0 0.27 9.4E-06 47.4 12.7 21 3-23 120-140 (443)
40 1zu4_A FTSY; GTPase, signal re 94.3 0.5 1.7E-05 43.4 12.5 17 112-128 189-205 (320)
41 1ls1_A Signal recognition part 94.3 0.36 1.2E-05 43.8 11.3 38 198-238 213-250 (295)
42 2j37_W Signal recognition part 93.9 0.25 8.7E-06 48.4 10.0 22 4-25 122-143 (504)
43 2ffh_A Protein (FFH); SRP54, s 92.1 0.35 1.2E-05 46.4 7.8 24 105-128 171-194 (425)
44 1g5t_A COB(I)alamin adenosyltr 87.6 0.23 7.7E-06 42.7 2.1 43 100-142 106-148 (196)
45 4a0g_A Adenosylmethionine-8-am 80.1 3.9 0.00013 42.4 7.9 67 197-282 232-298 (831)
46 3kl4_A SRP54, signal recogniti 78.8 4.4 0.00015 38.8 7.3 19 108-126 173-191 (433)
47 2obn_A Hypothetical protein; s 78.6 4 0.00014 37.9 6.8 63 197-274 255-333 (349)
48 1vma_A Cell division protein F 78.2 9.7 0.00033 34.4 9.2 62 197-278 224-285 (306)
49 3p32_A Probable GTPase RV1496/ 67.6 5.2 0.00018 36.8 4.6 21 108-128 165-185 (355)
50 4dhe_A Probable GTP-binding pr 67.6 49 0.0017 27.0 12.1 87 199-297 119-210 (223)
51 2v3c_C SRP54, signal recogniti 63.7 16 0.00056 34.6 7.4 21 3-23 119-139 (432)
52 3ph0_C ASCG; type III secretio 63.2 7.9 0.00027 26.2 3.5 32 85-116 26-57 (61)
53 2px0_A Flagellar biosynthesis 61.7 9.5 0.00032 34.2 5.1 26 210-237 226-251 (296)
54 3twe_A Alpha4H; unknown functi 60.1 12 0.0004 20.6 3.2 24 170-193 3-26 (27)
55 2yhs_A FTSY, cell division pro 58.1 36 0.0012 33.1 8.7 20 109-128 370-389 (503)
56 1vco_A CTP synthetase; tetrame 46.0 18 0.00062 35.6 4.5 85 105-236 135-225 (550)
57 2r8r_A Sensor protein; KDPD, P 45.7 30 0.001 30.0 5.4 56 3-58 26-82 (228)
58 3nva_A CTP synthase; rossman f 35.6 1.3E+02 0.0043 29.5 8.5 60 166-233 148-213 (535)
59 3vqt_A RF-3, peptide chain rel 34.7 70 0.0024 31.2 6.7 56 198-267 126-181 (548)
60 3sjy_A Translation initiation 30.7 3.1E+02 0.011 25.0 12.1 88 197-298 101-193 (403)
61 1wb1_A Translation elongation 29.0 2.8E+02 0.0097 26.2 9.9 38 198-236 99-136 (482)
62 2uwj_G Type III export protein 28.6 47 0.0016 25.4 3.3 30 85-115 26-55 (115)
63 2p58_C Putative type III secre 28.3 47 0.0016 25.4 3.3 30 85-115 27-56 (116)
64 1yrb_A ATP(GTP)binding protein 26.7 31 0.0011 29.2 2.4 21 4-25 35-55 (262)
65 1s1m_A CTP synthase; CTP synth 25.8 67 0.0023 31.5 4.8 30 206-235 184-213 (545)
66 1wf3_A GTP-binding protein; GT 25.3 1.3E+02 0.0043 26.6 6.2 43 190-236 83-128 (301)
67 3kin_B Kinesin heavy chain; mo 24.8 2.3E+02 0.0079 21.5 7.5 48 189-236 35-82 (117)
68 2l8b_A Protein TRAI, DNA helic 21.7 1.1E+02 0.0036 25.8 4.6 36 198-235 123-158 (189)
69 2qxy_A Response regulator; reg 21.7 85 0.0029 23.1 3.8 13 110-122 44-56 (142)
70 1yrb_A ATP(GTP)binding protein 20.9 51 0.0017 27.8 2.6 15 113-127 107-121 (262)
71 3vdp_A Recombination protein R 20.2 51 0.0017 28.2 2.3 40 191-230 145-184 (212)
72 2xsa_A Ogoga, hyaluronoglucosa 20.1 5.6E+02 0.019 24.3 10.6 101 195-297 70-184 (447)
No 1
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=100.00 E-value=9.2e-53 Score=397.75 Aligned_cols=289 Identities=47% Similarity=0.751 Sum_probs=213.3
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhhhccCCCCCCeeeCCCCCeEEEEecchHHHHhhcccchhhhhhhCCccccccCCC
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~l~~~l~~~p~~v~~~~nL~a~eid~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 82 (311)
+|..+|+.|+||||+++||++|+++.||.+.+..|+.+.+.+||+++++|+...+++|+. .+........ ..+
T Consensus 36 lA~~la~~g~~vllid~D~~~~l~~~l~~~~~~~~~~v~~~~~L~~~~id~~~~~~~~~~------~~~~~~~~~~-~~l 108 (334)
T 3iqw_A 36 LAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSMQDLLA------GQTGDGDAGM-GGV 108 (334)
T ss_dssp HHHHHTTSSSCEEEEECCSSCHHHHHHTSCCCSSCEECTTCSSEEEEECCC-----------------------------
T ss_pred HHHHHHhCCCcEEEEECCCCCChhHHhccccCCCceeecCCCCceeeecCHHHHHHHHHH------Hhhccccccc-ccc
Confidence 566778899999999999999999999999999999998889999999999999999983 1211100000 112
Q ss_pred chhHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHHHhhhchhhhhhhhh
Q psy2008 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGPFLTQIGTL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~PG~~E~~aL~~l~~~~~~~~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l~~k~~~~~~~l~~~ 162 (311)
.++.++....||++|++++.++.+++++++||+|||||||||||||||++|+.+.||++++++++++++++.+++.+.
T Consensus 109 --~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~ 186 (334)
T 3iqw_A 109 --GVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGILGG 186 (334)
T ss_dssp ------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC------------------------
T ss_pred --hhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566667899999999999999999999999999999999999999999999999999999999998888877776
Q ss_pred cCC--CCCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCc-CcC
Q psy2008 163 FGL--ADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLV-FYS 239 (311)
Q Consensus 163 ~g~--~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~-~~~ 239 (311)
+|. +....+++++.++++++++++++++|+||+.|+|++||+|+.+++.|++|+++.|+++|+++.++|+|+++ |+.
T Consensus 187 ~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~ 266 (334)
T 3iqw_A 187 SGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKP 266 (334)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCT
T ss_pred hcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCccc
Confidence 652 13456789999999999999999999999999999999999999999999999999999999999999999 433
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhcCC-CcEEEecCCCCCCCCHHHHHHHHHHhcCCCCCCC
Q psy2008 240 ASVDACALCSTRYRTQAKYLDQILDLYEED-FHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPTN 303 (311)
Q Consensus 240 ~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~-~pv~~vp~~~~e~~g~~~L~~l~~~l~~~~~~~~ 303 (311)
. ..|++|++|++.|+++|+++.+.|+ + +|++.+|+++.||.|+++|++|++.|+++.+|-.
T Consensus 267 ~--~~~~~~~~r~~~q~~~l~~i~~~~~-~~~~~~~~pl~~~e~~G~~~L~~~~~~l~~~~~~~~ 328 (334)
T 3iqw_A 267 G--SDCEQCTARRRMQKKYLDQIEELYD-EEFNVVKMPLLVEEVRGKERLEKFSEMLIKPFVPPE 328 (334)
T ss_dssp T--CCCHHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEECCSSCCCHHHHHHHHHHHHHSCCCCCC
T ss_pred C--CcCHHHHHHHHHHHHHHHHHHHhcc-CCCCEEEecCCCCCCCCHHHHHHHHHHHcCCCCCcc
Confidence 2 4799999999999999999999998 7 9999999999999999999999999999976643
No 2
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=100.00 E-value=8.8e-52 Score=392.98 Aligned_cols=285 Identities=42% Similarity=0.733 Sum_probs=176.5
Q ss_pred hhhhHH--hCCCcEEEEecCCCCChhhhhccCCCCCCeeeCCCCCeEEEEecchHHHHhhcccchhhhhhhCCccccccC
Q psy2008 3 ENQYSK--ALDKEASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGG 80 (311)
Q Consensus 3 ~~~~aa--~~G~rtLlvS~DPa~sL~d~l~~~l~~~p~~v~~~~nL~a~eid~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 80 (311)
+|..+| +.|+||||+++||+||+++.||.+++++|+.|.+.+||+++++|+...+++|+. ... .+.......
T Consensus 38 lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~~~~~~--~~~-~~~~~~~~~--- 111 (348)
T 3io3_A 38 VAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFGKDARKVEGLPNLSCMEIDPEAAMSDLQQ--QAS-QYNNDPNDP--- 111 (348)
T ss_dssp HHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCCCSSCEEETTEEEEEEEECCC---------------------------
T ss_pred HHHHHHHhcCCCeEEEEECCCCCChHHHhccccCCCceeccCCCCceEEeeCHHHHHHHHHH--HHH-hhccccccc---
Confidence 466667 899999999999999999999999999999998889999999999999999983 111 010010011
Q ss_pred CCchhHHHHHhhcCCCHHHHHHHHHHHHHHhcC------------CCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHH
Q psy2008 81 GMINDVLNDLINGFPGIDEAMSYAEVLKLVKGM------------NFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILAL 148 (311)
Q Consensus 81 ~~~~~~~~~~~~~~PG~~E~~aL~~l~~~~~~~------------~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l 148 (311)
+ ..++.++....||++|++++.++.+++++. +||+|||||||||||||||++|+.+.||+++++++
T Consensus 112 -l-~~~~~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lP~~~~~~l~~~~~~ 189 (348)
T 3io3_A 112 -L-KSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKDL 189 (348)
T ss_dssp ----------------------------------------------CCEEEEECSSHHHHHHHTC---------------
T ss_pred -H-hHHhHHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 234456677789999999999999999875 89999999999999999999999999999999999
Q ss_pred HhhhchhhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcc
Q psy2008 149 RNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTR 228 (311)
Q Consensus 149 ~~k~~~~~~~l~~~~g~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~ 228 (311)
.++++++. +++..+| .+++++.+++++++++++.++|+||+.|++++||+|+.+++.|++|+++.|+++|+++.
T Consensus 190 ~~~~~p~~-~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~ 263 (348)
T 3io3_A 190 SGKLGPML-SMMGGGQ-----QQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYETERMIQELMSYNMDVN 263 (348)
T ss_dssp ------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHhhhHHH-HhcccCc-----hHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHHHHHHHHHHHCCCCcc
Confidence 88887766 5544333 57899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCcCcC-ccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEEecCCCCCCCCHHHHHHHHHHhcCCCCCCC
Q psy2008 229 NIIVNQLVFYS-ASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPTN 303 (311)
Q Consensus 229 ~vvvNrv~~~~-~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp~~~~e~~g~~~L~~l~~~l~~~~~~~~ 303 (311)
++|+||++++. .+ ..|++|+.|++.|+++++++.+.|+ ++|++.+|+++.||.|+++|++|++.|+.+.+|..
T Consensus 264 gvVvN~~~~~~~~~-~~~~~~~~r~~~q~~~l~~i~~~~~-~~~~~~~pl~~~e~~G~~~L~~~~~~l~~~~~p~~ 337 (348)
T 3io3_A 264 SIVVNQLLFAEGDD-HSCKRCESRWKMQKKYLDQMGELYE-DYHLVKMPLLGCEIRGVENLKKFSKFLLKPYDPKA 337 (348)
T ss_dssp EEEEEEECCCC------CHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEECCSSCCCSHHHHHHHHHHHHSCCCTTT
T ss_pred EEEEcCCccccccC-ccCHHHHHHHHHHHHHHHHHHHHcc-CCCEEEecCCCCCCCCHHHHHHHHHHHcCCCCccc
Confidence 99999999865 21 3699999999999999999999998 99999999999999999999999999999988864
No 3
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=100.00 E-value=1.1e-48 Score=371.98 Aligned_cols=297 Identities=30% Similarity=0.491 Sum_probs=245.9
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhhhccCCCCCCeeeCCCCCeEEEEecchHHHHhhcccchhhhhhhCCccccccCCC
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~l~~~l~~~p~~v~~~~nL~a~eid~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 82 (311)
+|..+|+.|+||||+++||+|||++.||.+.+.+|+.+.|.+||++.++|+...+++||. .+.......+. .
T Consensus 46 LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v~g~~~l~~~~id~~~~~~~~~~------~~~~~~~~~l~--~ 117 (349)
T 3ug7_A 46 TGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKE------KLKAQIEENPF--L 117 (349)
T ss_dssp HHHHHHHSSCCEEEEECCTTCHHHHHHCSCCCSSCEECTTCSSEEEEECCHHHHHHHHHH------HHHHHGGGCHH--H
T ss_pred HHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCCcCccccccccceeeeccCHHHHHHHHHH------HHHHHHHHhcc--c
Confidence 566778899999999999999999999999999999999899999999999999999983 22111111111 0
Q ss_pred chhH--HHHHhhcCCCHHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHHHhhhchhhhhhh
Q psy2008 83 INDV--LNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGPFLTQIG 160 (311)
Q Consensus 83 ~~~~--~~~~~~~~PG~~E~~aL~~l~~~~~~~~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l~~k~~~~~~~l~ 160 (311)
...+ ..+.+...||++|++++.++.+++++++||+|||||||||||||||++|+.+.||+++++++++++..+.+.++
T Consensus 118 ~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p~~~~~~~~~l~~~~~~~~~~~~~~~ 197 (349)
T 3ug7_A 118 GEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMK 197 (349)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111 12356688999999999999999998899999999999999999999999999999999999988877766665
Q ss_pred hhc---CCC-CCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCc
Q psy2008 161 TLF---GLA-DFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLV 236 (311)
Q Consensus 161 ~~~---g~~-~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~ 236 (311)
++. |.+ ..+.|++++.++++++++++++++|+||++|.+++||+|+.+++.|++|+++.|+++|+++.++|+|+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~ 277 (349)
T 3ug7_A 198 KLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLI 277 (349)
T ss_dssp HHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCc
Confidence 432 321 2556899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEEecCCCCCCCCHHHHHHHHHHhcCCCCCCC-CccccccC
Q psy2008 237 FYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPTN-KISERVDQ 311 (311)
Q Consensus 237 ~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp~~~~e~~g~~~L~~l~~~l~~~~~~~~-~~~~~~~~ 311 (311)
+.. ..|++|..+++.|+++++++.+.|+ ..++..+|+.+.||.|+++|+++++.|+.+.+|+. +|-+.|.|
T Consensus 278 ~~~---~~~~~~~~~~~~~~~~l~~i~~~~~-~~~l~~iPl~~~e~~g~~~L~~~~~~l~~~~~~~~~~~~~~~~~ 349 (349)
T 3ug7_A 278 PED---VQCDFCRARRELQLKRLEMIKEKFG-DKVIAYVPLLRTEAKGIETLKQIAKILYGEEEKEEQKIEQKVGQ 349 (349)
T ss_dssp CSC---CCSHHHHHHHHHHHHHHHHHHHHST-TSEEEEEECCSSCSCSHHHHHHHHHHHC----------------
T ss_pred ccc---CCCchHHHHHHHHHHHHHHHHHHcC-CCcEEEecCCCCCCCCHHHHHHHHHHHcCCCCcccccccccccC
Confidence 864 3599999999999999999999998 89999999999999999999999999999977764 56666654
No 4
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=7.1e-48 Score=362.61 Aligned_cols=287 Identities=30% Similarity=0.519 Sum_probs=243.7
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhhhccCCCCCCeeeCCCCCeEEEEecchHHHHhhcccchhhhhhhCCccccccCCC
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~l~~~l~~~p~~v~~~~nL~a~eid~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 82 (311)
+|..+|+.|+|||||++||+||+++.||.+.+.+|+.+. +||++.++|+...+++||. ++.......+...+
T Consensus 34 LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v~--~~l~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~ 105 (324)
T 3zq6_A 34 TALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKIT--ENLYAVEIDPEVAMEEYQA------KLQEQAAMNPGMGL 105 (324)
T ss_dssp HHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCSSCEEEE--TTEEEEECCHHHHHHHHHH------HC------------
T ss_pred HHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCCCCccCC--CCceeeccChHHHHHHHHH------HHHHHHHhhcccch
Confidence 567778899999999999999999999999999999997 9999999999999999983 22221111121111
Q ss_pred chhHH--HHHhhcCCCHHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHHHhhhchhhhhhh
Q psy2008 83 INDVL--NDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGPFLTQIG 160 (311)
Q Consensus 83 ~~~~~--~~~~~~~PG~~E~~aL~~l~~~~~~~~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l~~k~~~~~~~l~ 160 (311)
..+. .+.+...||++|++++.++.+++++++||+|||||||||||+|+|++|+.+.||++++++++++..++.+.++
T Consensus 106 -~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~~~~~~~~~~~~~~~ 184 (324)
T 3zq6_A 106 -DMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFK 184 (324)
T ss_dssp ----------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred -hhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 1356678999999999999999998999999999999999999999999999999999999988877766555
Q ss_pred hhcCC-C-CCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCc
Q psy2008 161 TLFGL-A-DFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFY 238 (311)
Q Consensus 161 ~~~g~-~-~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~ 238 (311)
+++.. + ..+.+++++.++++++++++++++|+||++|.+++|++|+.+++.|++++++.|++.|+++.++|+|++++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 185 NILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp TTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred hhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 44321 1 112378999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEEecCCCCCCCCHHHHHHHHHHhcCCCCCC
Q psy2008 239 SASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPT 302 (311)
Q Consensus 239 ~~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp~~~~e~~g~~~L~~l~~~l~~~~~~~ 302 (311)
. ..|++|+.+++.|+++++++.+.|+ ..++..+|+++.||.|+++|+++++.|+.+.+|.
T Consensus 265 ~---~~~~~~~~~~~~~~~~l~~i~~~~~-~~~~~~iPl~~~e~~g~~~L~~~~~~l~~~~~p~ 324 (324)
T 3zq6_A 265 E---SDCEFCNARRKLQQERLKQIREKFS-DKVVAEVPLLKKEAKGIETLEKIAEQLYGEPEPE 324 (324)
T ss_dssp C---CCSHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEECCSSCSCSHHHHHHHHHHHHCSCC--
T ss_pred c---CCChHHHHHHHHHHHHHHHHHHHcC-CCcEEEecCCCCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4 3699999999999999999999998 8999999999999999999999999999988763
No 5
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-45 Score=346.48 Aligned_cols=284 Identities=45% Similarity=0.772 Sum_probs=244.1
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhhhccCCCCCCeeeCCCCCeEEEEecchHHHHhhcccchhhhhhhCCccccccCCC
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~l~~~l~~~p~~v~~~~nL~a~eid~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 82 (311)
+|..+|++|+||||+++||+||+++.||.+.+.+|+.+.+.+||++.++|+...++++|. .+... . +...+
T Consensus 39 LA~~lA~~G~rVllvD~D~~~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~------~~~~~--~-l~~~l 109 (329)
T 2woo_A 39 LAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTE------QADQQ--N-PNNPL 109 (329)
T ss_dssp HHHHHHTSSSCEEEEECCTTCHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHHHHHH------TC-----------C
T ss_pred HHHHHHHCCCeEEEEECCCCcCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHHHHHH------HHhhh--h-HHHHh
Confidence 466677899999999999999999999999998998888889999999999999999972 22111 0 11112
Q ss_pred chhHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHHHhhhchhhhhhhhh
Q psy2008 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGPFLTQIGTL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~PG~~E~~aL~~l~~~~~~~~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l~~k~~~~~~~l~~~ 162 (311)
+ ..+.++....||.+|.+++.++.+.+++++||+|||||||||||||||++|+.+.+|+++++++..++.++.+.++.+
T Consensus 110 ~-~~l~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~l~~~~~~~~~~~~~l~~~ 188 (329)
T 2woo_A 110 S-GMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSI 188 (329)
T ss_dssp C-HHHHHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHHHHHHHHHHHHHTSCSSCHHHHHHHHHH
T ss_pred h-HHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 233344567899999999999999998889999999999999999999999999999999998888877776666665
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCc-CcCcc
Q psy2008 163 FGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLV-FYSAS 241 (311)
Q Consensus 163 ~g~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~-~~~~~ 241 (311)
+|. .++.|++...++.++++++++++.|+||+.|.|++|++|+.+++.|++++++.|+++|+++.++|+||+. |+ .
T Consensus 189 ~g~-~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~-~- 265 (329)
T 2woo_A 189 MGV-NANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDP-N- 265 (329)
T ss_dssp HC------CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCS-S-
T ss_pred cCC-CCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcc-c-
Confidence 562 3344567788899999999999999999999999999999999999999999999999999999999999 65 2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEEecCCCCCCCCHHHHHHHHHHhcCCCCC
Q psy2008 242 VDACALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301 (311)
Q Consensus 242 ~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp~~~~e~~g~~~L~~l~~~l~~~~~~ 301 (311)
..|++|..|.+.|+++++++.+.|+ ++|+..+|+++.|+.|+++|++|++.|+.+.++
T Consensus 266 -~~~~~~~~~~~~q~~~l~~i~~~~~-~~~~~~vP~~~~e~~g~~~L~~l~~~l~~~~~~ 323 (329)
T 2woo_A 266 -TTCPQCMARRKMQQKYLAQIEELYE-DFHVVKVPQVPAEVRGTEALKSFSEMLVKPYVY 323 (329)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEECCSSCCCSTTHHHHHHHHHHSCCC-
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHhcC-CCCEEEecCCCCCCCCHHHHHHHHHHHhcCCCc
Confidence 4799999999999999999999998 999999999999999999999999999988655
No 6
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=100.00 E-value=2.7e-44 Score=342.38 Aligned_cols=287 Identities=45% Similarity=0.739 Sum_probs=227.7
Q ss_pred hhhhHH--hCCCcEEEEecCCCCChhhhhccCCCCCCeeeCCCCCeEEEEecchHHHHhhcccchhhhhhhC----Cccc
Q psy2008 3 ENQYSK--ALDKEASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANG----GSGN 76 (311)
Q Consensus 3 ~~~~aa--~~G~rtLlvS~DPa~sL~d~l~~~l~~~p~~v~~~~nL~a~eid~~~~~~~~~~~~~l~~~~~~----~~~~ 76 (311)
+|..+| +.|+||||+++||+|||+++||.+.+++|+.|.|.+||++.++|+...+++||. .+...... ..+.
T Consensus 38 LA~~lA~~~~G~rVLLvD~D~~~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~l~~~~~--~~~~~~~~~~~~~~g~ 115 (354)
T 2woj_A 38 IAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMND--MAVSRANNNGSDGQGD 115 (354)
T ss_dssp HHHHHHHHCTTSCEEEEECCSSCCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHHHHHHHT--C---------------
T ss_pred HHHHHHHhcCCCeEEEEECCCCCCHHHHhCCCCCCCceeecCCCceEEEecCHHHHHHHHHH--HHHhhcccccccchhh
Confidence 466667 799999999999999999999999999999999899999999999999999983 11100000 0000
Q ss_pred cccCC-CchhHHHHHhhcCCCHHHHHHHHHHHHHHhcC------CCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHHH
Q psy2008 77 MFGGG-MINDVLNDLINGFPGIDEAMSYAEVLKLVKGM------NFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALR 149 (311)
Q Consensus 77 ~l~~~-~~~~~~~~~~~~~PG~~E~~aL~~l~~~~~~~------~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l~ 149 (311)
.+... +. ....++....||++|++.|.++.+.++++ +||+|||||||||||||||++|+.+.||+++++++.
T Consensus 116 ~l~~l~~~-~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~tLrlL~~p~~~~~~l~~l~~~~ 194 (354)
T 2woj_A 116 DLGSLLQG-GALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEIT 194 (354)
T ss_dssp -----CCS-SHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHHHHHHHTHHHHHHHHHHCC----
T ss_pred hhhhccch-hHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchHHHHHHhhHHHHHHHHHHHHHHH
Confidence 12100 11 23345556789999999999999999873 899999999999999999999999999999999888
Q ss_pred hhhchhhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcce
Q psy2008 150 NQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRN 229 (311)
Q Consensus 150 ~k~~~~~~~l~~~~g~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~ 229 (311)
.++.++..++..+ + .+++++.+++++++++++.+.|+||..|.+++|++||.+++.|+.|+++.|+.+|+++.+
T Consensus 195 ~~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~g 268 (354)
T 2woj_A 195 NKLGPMLNSFMGA-G-----NVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNS 268 (354)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhhcC-C-----hHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCE
Confidence 8776655443222 1 244788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCc-CcCcccc--chHHHHHHHHHHHHHHHHHHhhhcCCCcEEEecCCCCCCCCHHHHHHHHHHhcCCCCC
Q psy2008 230 IIVNQLV-FYSASVD--ACALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301 (311)
Q Consensus 230 vvvNrv~-~~~~~~~--~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp~~~~e~~g~~~L~~l~~~l~~~~~~ 301 (311)
+|+||+. |... . .|++|..+.+.|+++|+++...|. +.++..+|++..++.|.++|+++++.|+.+..|
T Consensus 269 vVvN~v~~~~~~--~~~~~~~~~~~~~~q~~~l~~l~~~~~-~~~v~~~P~~~~~~~g~~~l~~la~~l~~~~~~ 340 (354)
T 2woj_A 269 IIVNQLLFAEND--QEHNCKRCQARWKMQKKYLDQIDELYE-DFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNP 340 (354)
T ss_dssp EEEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEECCSSCCCHHHHHHHHHHHHHTTCCH
T ss_pred EEEecCCCcccc--cccccHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeecCCCCCccHHHHHHHHHHHhcCCCC
Confidence 9999999 6531 1 589999999999999999999998 999999999999999999999999999988655
No 7
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=100.00 E-value=4e-45 Score=349.83 Aligned_cols=255 Identities=15% Similarity=0.209 Sum_probs=202.2
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhhhccCCCCCCeeeCCCCCeEEEEecchHHHHhhcccchhhhhhhCCcccccc-CC
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFG-GG 81 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~l~~~l~~~p~~v~~~~nL~a~eid~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~ 81 (311)
+|..+|+.|+||||+++ |+||+++.||.+++++|+.|. +||+++++|+...+++||+ .+...+. ..+. ..
T Consensus 22 la~~la~~g~~vllvd~-~~~~l~~~~~~~~~~~~~~v~--~~L~~~eid~~~~~~~~~~--~~~~~~~----~~l~~~~ 92 (374)
T 3igf_A 22 AAKLLASQGKRVLLAGL-AEPVLPLLLEQTLTPDPQQIA--PNLEVVQFQSSVLLERNWE--EVKKLEA----QYLRTPI 92 (374)
T ss_dssp HHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCCSSCEEEE--TTEEEEECCHHHHHHHHHH--HHHHHHH----HHCSSCS
T ss_pred HHHHHHHCCCCeEEEeC-CCCChHHhhCCCCCCCccccc--ccccccccCHHHHHHHHHH--HHHHHHH----hhccccc
Confidence 56677789999999999 999999999999999999998 9999999999999999994 2221111 1111 11
Q ss_pred CchhHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHHHhhh--------c
Q psy2008 82 MINDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQI--------G 153 (311)
Q Consensus 82 ~~~~~~~~~~~~~PG~~E~~aL~~l~~~~~~~~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l~~k~--------~ 153 (311)
+ ..+..+++..+||++|++++.++.+++++++||+|||||||||||||||++|+.+.||++++++++++. .
T Consensus 93 ~-~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~~l~~l~~~~~~~~~g~~~~~~ 171 (374)
T 3igf_A 93 I-KEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQLFVNSDLGKTIAES 171 (374)
T ss_dssp S-SSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHHHHHHTTSCC------------
T ss_pred c-cccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHHHHHHHHHHHhhhccccccccc
Confidence 1 223345678899999999999999999999999999999999999999999999999999988887763 3
Q ss_pred hhhhhhhhh-cCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEE
Q psy2008 154 PFLTQIGTL-FGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIV 232 (311)
Q Consensus 154 ~~~~~l~~~-~g~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvv 232 (311)
+..+++... +| .+++.|++++.++++++++++++++|+||++|+|++||+||++++.|++|+++.|+++|+++.++|+
T Consensus 172 ~~~~p~~~~~~~-~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVv 250 (374)
T 3igf_A 172 PLIQPLISSFFN-VNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQ 250 (374)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hhhhhhhhhhcc-CCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEE
Confidence 344444332 33 3466788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcCccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEEecCCCCCCCCHHHHHHHHHHh
Q psy2008 233 NQLVFYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRML 295 (311)
Q Consensus 233 Nrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp~~~~e~~g~~~L~~l~~~l 295 (311)
|| ++ ++++|++.|+ ++||..+|+++.| .|+++++.|
T Consensus 251 N~--~~-------------------~l~~i~~~F~-~~~v~~vpl~~~e-----~l~~l~~~l 286 (374)
T 3igf_A 251 VS--SQ-------------------TEGDLSAEFT-PLSVTVVPDVTKG-----DWQPLIDAL 286 (374)
T ss_dssp CC--CS-------------------CCCCCGGGST-TSCEEECCCCBTT-----BCHHHHHHC
T ss_pred cC--HH-------------------HHHHHHHhcC-CCceEECCCCChh-----HHHHHHHHh
Confidence 99 32 4578999998 9999999999988 788888887
No 8
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=100.00 E-value=7.1e-34 Score=286.65 Aligned_cols=262 Identities=21% Similarity=0.270 Sum_probs=209.7
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhhhccCCCCCCeeeCCCCCeEEEEecchHHHHhhcccchhhhhhhCCccccccCCC
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~l~~~l~~~p~~v~~~~nL~a~eid~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 82 (311)
+|..+|++|+|||+|++||+|||++.||.+.+.+|+.+.+.+||++.++|+...+++|++ .+... ..+.+
T Consensus 28 lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~~~------~~~~~----~~~~l 97 (589)
T 1ihu_A 28 TAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRA------RIVDP----IKGVL 97 (589)
T ss_dssp HHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHHHH------HHHGG----GTTTS
T ss_pred HHHHHHHCCCcEEEEECCCCcCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHHHHH------HHHHH----HHHhc
Confidence 466677899999999999999999999999999999998889999999999999999883 22111 11122
Q ss_pred chhHHHHHh--hcCCCHHHHHHHHHHHHHHh----cCCCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHHHhhhchhh
Q psy2008 83 INDVLNDLI--NGFPGIDEAMSYAEVLKLVK----GMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGPFL 156 (311)
Q Consensus 83 ~~~~~~~~~--~~~PG~~E~~aL~~l~~~~~----~~~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l~~k~~~~~ 156 (311)
......... -..|+..|++.+.++.++++ .++||+|||||||++|++|+|++|+.+.+|+++.......
T Consensus 98 p~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~lrll~lP~~~~~~l~~~~~~~~~----- 172 (589)
T 1ihu_A 98 PDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASC----- 172 (589)
T ss_dssp CHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGTCCC------CCC-----
T ss_pred chhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhHHHHHHhHHHHHHHHHHhhccccc-----
Confidence 222222111 12356889999999999887 3679999999999999999999999999998764221111
Q ss_pred hhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCc
Q psy2008 157 TQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLV 236 (311)
Q Consensus 157 ~~l~~~~g~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~ 236 (311)
+..+.|. ...++++.++.+.+.||+.|.+++|++|+.+++.++.++++.|+++|+++.++|+||+.
T Consensus 173 --l~~~~~l------------~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 173 --LGPMAGL------------EKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp --CGGGGGC------------CSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred --cchhhhh------------hHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
Confidence 1111121 12345667788899999999999999999999999999999999999999999999999
Q ss_pred CcCccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEEecCCCCCCCCHHHHHHHHHHh
Q psy2008 237 FYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRML 295 (311)
Q Consensus 237 ~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp~~~~e~~g~~~L~~l~~~l 295 (311)
+.... ..|++|+.|+..|+++++++.+.|+ ++++..+|+++.|+.|+++|++++..+
T Consensus 239 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~-~~~i~~vPl~~~e~~g~~~l~~~~~~~ 295 (589)
T 1ihu_A 239 PKTEA-ANDTLAAAIWEREQEALANLPADLA-GLPTDTLFLQPVNMVGVSALSRLLSTQ 295 (589)
T ss_dssp CGGGG-SSCHHHHHHHHHHHHHHHTCCHHHH-TSCEEEEECCSSCCCSHHHHHHTTCSC
T ss_pred Ccccc-ccCHHHHHHHHHHHHHHHHHHHhcc-CCCEEEecCCCCCCCCHHHHHHHHhhh
Confidence 86421 2589999999999999999999999 999999999999999999999998776
No 9
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.96 E-value=3e-29 Score=252.86 Aligned_cols=237 Identities=19% Similarity=0.261 Sum_probs=173.3
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhhhccCCCCCCeeeCCCCCeEEEEecchHHHHhhcccchhhhhhhCCccccccCCC
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~l~~~l~~~p~~v~~~~nL~a~eid~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 82 (311)
+|..++++|+||+++++||++++++.||.. .+|+++.++|+....++|+. .+..... ..+. ..
T Consensus 347 lA~~l~~~g~~vllvD~Dp~~~l~~~l~~~----------~~~l~~~~~~~~~~~~~~~~--~v~~~~~----~~l~-~~ 409 (589)
T 1ihu_A 347 IAVRLADMGFDVHLTTSDPAAHLSMTLNGS----------LNNLQVSRIDPHEETERYRQ--HVLETKG----KELD-EA 409 (589)
T ss_dssp HHHHHHHTTCCEEEEESCCC---------------------CCEEEEECCHHHHHHHHHH--HHHHHHH----TTCC-HH
T ss_pred HHHHHHHCCCcEEEEeCCCcccHhHHhccc----------CCCceeeecchHHHHHHHHH--HHHHhhh----ccCC-hh
Confidence 466677899999999999999999999862 27899999999888888763 1111110 1111 00
Q ss_pred chhHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHHHhhhchhhhhhhhh
Q psy2008 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGPFLTQIGTL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~PG~~E~~aL~~l~~~~~~~~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l~~k~~~~~~~l~~~ 162 (311)
..... ......||++|..++.++.+++++++||+|||||||++||+++|++|+.+.+++.+.
T Consensus 410 ~~~~~-~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~----------------- 471 (589)
T 1ihu_A 410 GKRLL-EEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKK----------------- 471 (589)
T ss_dssp HHHHH-HHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC---------------------------
T ss_pred hHHHH-HHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHh-----------------
Confidence 01112 222346999999999999999887889999999999999999999999975544221
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccc
Q psy2008 163 FGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASV 242 (311)
Q Consensus 163 ~g~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~ 242 (311)
++ +. . .+..+...|+||..+.+++|++|+.+++.++.++++.|+++|+++.++|+||+.+...
T Consensus 472 ~~--~~------------~-~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~-- 534 (589)
T 1ihu_A 472 MG--EK------------G-HFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIAD-- 534 (589)
T ss_dssp -----------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSC--
T ss_pred cc--cc------------h-HHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCC--
Confidence 11 10 0 1223345688999999999999999999999999999999999999999999998753
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhcCCCcEEEecCCCCCCCCHHHHHHHHH
Q psy2008 243 DACALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSR 293 (311)
Q Consensus 243 ~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp~~~~e~~g~~~L~~l~~ 293 (311)
..|++|..|.+.|+++++++++.|+ .|+..+|+++.||+|++.|++.+.
T Consensus 535 ~~~~~~~~~~~~~~~~l~~l~~~~~--~~v~~iP~~~~e~~g~~~l~~~~~ 583 (589)
T 1ihu_A 535 TRSPLLRMRAQQELPQIESVKRQHA--SRVALVPVLASEPTGIDKLKQLAG 583 (589)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTC--SSEEEEECCSSCCCSHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhcC--CcEEEccCCCCCCCCHHHHHHHhc
Confidence 4799999999999999999999995 699999999999999999998763
No 10
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=98.78 E-value=1.7e-08 Score=92.75 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=38.6
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFY 238 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~ 238 (311)
.+++|+.++..+..++.++++.|+..|+++-++|+|++-+.
T Consensus 227 ~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 227 TTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp EEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 58999999999999999999999999999999999999654
No 11
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=98.73 E-value=7.1e-08 Score=84.91 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=37.6
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcC
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVF 237 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~ 237 (311)
..+++|+.|+..++..+.++.+.++..|++.-++|+||+.+
T Consensus 155 D~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 155 DMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 46899999999999999999999999999888999999864
No 12
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=98.67 E-value=1.5e-07 Score=84.25 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=34.0
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhc------CCCcceEEEcCCcCc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKT------GIDTRNIIVNQLVFY 238 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~------gi~v~~vvvNrv~~~ 238 (311)
.+++|+.|+..++..+.++++.++.. ++++-++|+||+-+.
T Consensus 136 ~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 136 GVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp EEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred eEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 68999999999999988888888752 677778999998653
No 13
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=98.65 E-value=2.3e-07 Score=83.38 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=37.7
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcC
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVF 237 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~ 237 (311)
..+++|+.|+..++..+.++++.+++.|+++-++|+|++-+
T Consensus 154 D~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 154 TGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp SEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred CeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 36899999999999999999999999999999999999864
No 14
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.64 E-value=2.2e-08 Score=91.22 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=37.8
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFY 238 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~ 238 (311)
.+++|+.++..+..++.++.+.|+..|+++-++|+|++-+.
T Consensus 217 ~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 217 NVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 58999999999999999999999999999999999998653
No 15
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=98.61 E-value=1.9e-08 Score=92.89 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=38.3
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFY 238 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~ 238 (311)
.+++|+.++..+..++.++++.|+..|+++-++|+|++-+.
T Consensus 239 ~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 239 TSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp EEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred EEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 68999999999999999999999999999999999998654
No 16
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.60 E-value=8.5e-08 Score=88.09 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=35.6
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHh----cCCCcceEEEcCCcC
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAK----TGIDTRNIIVNQLVF 237 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~----~gi~v~~vvvNrv~~ 237 (311)
..+++|+.|+..++..+.++++.++. .++++-++|+||+-+
T Consensus 181 D~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 181 DQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35899999999999999999999997 466677899999964
No 17
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=98.57 E-value=1.1e-06 Score=80.16 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=44.1
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhc------CCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhhhc
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKT------GIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYE 267 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~------gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~ 267 (311)
..+++|+.|+..++..+.++++.++.. ++++-++|+||+-+.. ..+...++++.+.|+
T Consensus 178 D~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~-------------~~~~~~~~~~~~~~~ 241 (298)
T 2oze_A 178 DYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS-------------ATIKSNLEELYKQHK 241 (298)
T ss_dssp SEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC-------------HHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc-------------HHHHHHHHHHHHHhc
Confidence 368999999999999999999988863 7888899999986532 122345566666665
No 18
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=98.56 E-value=1.6e-07 Score=82.72 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=37.2
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcC--CCcceEEEcCCcCc
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTG--IDTRNIIVNQLVFY 238 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~g--i~v~~vvvNrv~~~ 238 (311)
..+++|+.|+..++..+.++++.++..| ...-++|+||+-+.
T Consensus 142 d~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 142 DELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 3689999999999999999999999988 56679999998754
No 19
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=98.48 E-value=1e-06 Score=77.25 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=38.7
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCc
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFY 238 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~ 238 (311)
..+++|+.|+..++..+.++++.+++.|+++-++|+||+-+.
T Consensus 135 d~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 135 EEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred CeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 368999999999999999999999999999999999998764
No 20
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=98.47 E-value=1.1e-06 Score=82.98 Aligned_cols=28 Identities=11% Similarity=-0.046 Sum_probs=24.4
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhhhc
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDAFN 30 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~l~ 30 (311)
+|...|+.|+|||||..||..+++..|.
T Consensus 22 LA~~LA~~G~rVLlID~D~q~~~~~~l~ 49 (361)
T 3pg5_A 22 VAHYFALQGKRVLYVDCDPQCNATQLML 49 (361)
T ss_dssp HHHHHHHTTCCEEEEECCTTCTTHHHHS
T ss_pred HHHHHHhCCCcEEEEEcCCCCChhhhhc
Confidence 4666777999999999999999998884
No 21
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=98.45 E-value=3.8e-06 Score=74.86 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=37.9
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFY 238 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~ 238 (311)
.+++|+.|+..++..+.++++.++..|+++-++|+||+-+.
T Consensus 135 ~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 135 ELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 68999999999999999999999999999999999998653
No 22
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.39 E-value=3.6e-06 Score=71.84 Aligned_cols=39 Identities=5% Similarity=0.157 Sum_probs=34.0
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcC-----CCcceEEEcCCcCc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTG-----IDTRNIIVNQLVFY 238 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~g-----i~v~~vvvNrv~~~ 238 (311)
.+++|+.|+..+ ..+.++++.++..+ +++ ++|+||+-+.
T Consensus 100 ~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 100 LVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp EEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred EEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence 589999999999 99999999999764 677 9999999754
No 23
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=98.21 E-value=1.1e-05 Score=72.11 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=33.4
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCC--CcceEEEcCC
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGI--DTRNIIVNQL 235 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi--~v~~vvvNrv 235 (311)
..+++|+.|+..++..+.++.+.++..+. ++ ++|+||+
T Consensus 168 D~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~ 207 (267)
T 3k9g_A 168 DYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRF 207 (267)
T ss_dssp SEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEE
T ss_pred CeEEEEeCCChHHHHHHHHHHHHHHHHhccCCE-EEEEecc
Confidence 46899999999999999999999999865 44 5999999
No 24
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=98.21 E-value=8.9e-06 Score=73.79 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=34.3
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhc----CCCcceEEEcCCc
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKT----GIDTRNIIVNQLV 236 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~----gi~v~~vvvNrv~ 236 (311)
..+++|++|+..++..+.++++.++.+ ++++.++|+|++-
T Consensus 145 D~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~ 188 (289)
T 2afh_E 145 QEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRN 188 (289)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCC
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 468899999999999999888888763 7888899999984
No 25
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=98.20 E-value=3.4e-06 Score=74.82 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=35.1
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCC--------CcceEEEcCCcC
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGI--------DTRNIIVNQLVF 237 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi--------~v~~vvvNrv~~ 237 (311)
..+++|+.|+..++..+.++++.++..+. ..-++|+||+-+
T Consensus 137 d~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 137 DEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 36899999999999999999999998763 356899999864
No 26
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=98.15 E-value=1.1e-05 Score=72.04 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=34.9
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhc----CCCcceEEEcCCcC
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKT----GIDTRNIIVNQLVF 237 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~----gi~v~~vvvNrv~~ 237 (311)
..+++|+.|+..++..+.++++.++.. ++++-++|+|++-+
T Consensus 142 D~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 142 QEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 468999999999999999999988863 67777999999853
No 27
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=98.09 E-value=3.5e-06 Score=80.32 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=21.8
Q ss_pred hCCCcEEEEecCCCCChhhhhccC
Q psy2008 9 ALDKEASGYSRPKTHNISDAFNQK 32 (311)
Q Consensus 9 ~~G~rtLlvS~DPa~sL~d~l~~~ 32 (311)
+.|+|||||..||..|++..||.+
T Consensus 141 ~~g~rVlliD~D~q~~l~~~l~~~ 164 (398)
T 3ez2_A 141 MEDLRILVIDLDPQSSATMFLSHK 164 (398)
T ss_dssp GGCCCEEEEEECTTCHHHHHHSCH
T ss_pred cCCCeEEEEeCCCCCChhHHhCCc
Confidence 479999999999999999999865
No 28
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=98.04 E-value=5.9e-06 Score=76.74 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=34.7
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHh----cCCCcceEEEcCCcC
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAK----TGIDTRNIIVNQLVF 237 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~----~gi~v~~vvvNrv~~ 237 (311)
..+++||+||..|+.-+.++...++. .+.++.++|+|+...
T Consensus 188 d~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~ 232 (314)
T 3fwy_A 188 DQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 232 (314)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred CeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc
Confidence 47899999999999999999998886 466778899998754
No 29
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=97.97 E-value=6.1e-06 Score=78.80 Aligned_cols=24 Identities=4% Similarity=-0.128 Sum_probs=19.7
Q ss_pred hCCCcEEEEecCCCCChhhhhccC
Q psy2008 9 ALDKEASGYSRPKTHNISDAFNQK 32 (311)
Q Consensus 9 ~~G~rtLlvS~DPa~sL~d~l~~~ 32 (311)
+.|+|||||..||..|++..||.+
T Consensus 144 ~~g~rVlliD~D~~~~l~~~l~~~ 167 (403)
T 3ez9_A 144 RHDLRILVIDLDPQASSTMFLDHT 167 (403)
T ss_dssp GGCCCEEEEEESSSSGGGSCC---
T ss_pred cCCCeEEEEeCCCCCChhhhhCCC
Confidence 579999999999999999988865
No 30
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.93 E-value=6.5e-05 Score=65.11 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=34.6
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhc-CCCcceEEEcCCcCc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKT-GIDTRNIIVNQLVFY 238 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~-gi~v~~vvvNrv~~~ 238 (311)
.+++|+.|+..++..+.++++.++.. +.+ -++|+||+-+.
T Consensus 93 ~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 93 LLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred EEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 58899999999999999999999984 666 47999999654
No 31
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.65 E-value=8.8e-05 Score=70.09 Aligned_cols=30 Identities=7% Similarity=-0.066 Sum_probs=26.1
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhhhccC
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDAFNQK 32 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~l~~~ 32 (311)
+|...|++|+|||++..|+.++++..||.+
T Consensus 164 LA~~La~~g~rVlliD~D~~~~l~~~lg~~ 193 (373)
T 3fkq_A 164 CAIAHANMGKKVFYLNIEQCGTTDVFFQAE 193 (373)
T ss_dssp HHHHHHHHTCCEEEEECCTTCCHHHHCCCS
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHcCCC
Confidence 456667789999999999999999999875
No 32
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=97.37 E-value=0.0009 Score=57.68 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=51.7
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEE-ec
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTK-LP 276 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~-vp 276 (311)
.+++|+.+...++.++.+.++.++..++++.++|+|++-+... .++..++.+++.++ .|++. ||
T Consensus 140 ~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~-------------~~~~~~~~l~~~~~--~~vl~~Ip 204 (224)
T 1byi_A 140 PVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGK-------------RHAEYMTTLTRMIP--APLLGEIP 204 (224)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCT-------------THHHHHHHHHHHSS--SCEEEEEC
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchh-------------hHHHHHHHHHHHcC--CCEEEECC
Confidence 4789999999999999999999999999999999999865321 12345567777774 66554 67
Q ss_pred CCC
Q psy2008 277 LQS 279 (311)
Q Consensus 277 ~~~ 279 (311)
...
T Consensus 205 ~~~ 207 (224)
T 1byi_A 205 WLA 207 (224)
T ss_dssp CCT
T ss_pred CCc
Confidence 654
No 33
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=97.08 E-value=0.0028 Score=55.75 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=57.9
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEE-e
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTK-L 275 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~-v 275 (311)
..+++|+.+...++..+...++.++..|+++.++|+||+-++.. .++...+.+++.++ +|++- +
T Consensus 141 ~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~-------------~~~~~~~~l~~~~g--~pvLG~i 205 (228)
T 3of5_A 141 IPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIK-------------YIDEQINTIEELSG--YKCSAKI 205 (228)
T ss_dssp CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCS-------------CHHHHHHHHHHHHS--CCCSEEE
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcch-------------hhHHHHHHHHHhhC--CCEEEEC
Confidence 34799999999999999999999999999999999999865421 12234566777774 66664 6
Q ss_pred cCCCCCCCCHHHHHHHHHHhc
Q psy2008 276 PLQSEEIRGVAKVEAFSRMLV 296 (311)
Q Consensus 276 p~~~~e~~g~~~L~~l~~~l~ 296 (311)
| ++..+...-.+...+-
T Consensus 206 P----~~~~~~~~~~~~~~~~ 222 (228)
T 3of5_A 206 S----RNADYLDFIDLSKILI 222 (228)
T ss_dssp E----SSCCHHHHHHHHHHHC
T ss_pred C----CchHhhhhcCHHHHhc
Confidence 8 3444454444444433
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.94 E-value=0.004 Score=60.11 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=17.7
Q ss_pred hhhhHHhC-CCcEEEEecCCCCC
Q psy2008 3 ENQYSKAL-DKEASGYSRPKTHN 24 (311)
Q Consensus 3 ~~~~aa~~-G~rtLlvS~DPa~s 24 (311)
+|.+++++ |+||+|++.||..+
T Consensus 120 LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 120 LGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp HHHHHHHTSCCCEEEEECCCSST
T ss_pred HHHHHHHhcCCeEEEEecCCCCc
Confidence 45566667 99999999999764
No 35
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=96.91 E-value=0.0072 Score=54.07 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=61.6
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEE-Ee
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVT-KL 275 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~-~v 275 (311)
..+++|+.++..+++.+...++.|+..|+++.++|+||+..... .. ++..++.|++. +|++ .+
T Consensus 158 ~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~-----~~-------~~~~~~~le~~----vpvLG~i 221 (251)
T 3fgn_A 158 AAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPG-----LV-------AASNRSALARI----AMVRAAL 221 (251)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCC-----HH-------HHHHHHHHHHH----SCEEEEE
T ss_pred CCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchh-----hh-------hhhHHHHHHHh----CCEEEEe
Confidence 45899999999999999999999999999999999999853211 00 11223444444 3566 57
Q ss_pred cCCCCCCCCHHHHHHHHHHhcCC
Q psy2008 276 PLQSEEIRGVAKVEAFSRMLVTP 298 (311)
Q Consensus 276 p~~~~e~~g~~~L~~l~~~l~~~ 298 (311)
|..... .+.+.+.+.+..++.+
T Consensus 222 P~~~~~-l~~~~~~~~~~~~~~~ 243 (251)
T 3fgn_A 222 PAGAAS-LDAGDFAAMSAAAFDR 243 (251)
T ss_dssp ETTGGG-CCHHHHHHHHHHHSCH
T ss_pred eCCCCc-CCHHHHHHHHhcccch
Confidence 988644 5778888888776653
No 36
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.76 E-value=0.011 Score=54.12 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=25.3
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcC
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVF 237 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~ 237 (311)
..+++|+.+.. -.++......++. ++++.++|+|++-.
T Consensus 214 d~vllVvda~~--g~~~~~~~~~~~~-~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 214 DEVTLVIDASI--GQKAYDLASKFNQ-ASKIGTIIITKMDG 251 (297)
T ss_dssp SEEEEEEEGGG--GGGHHHHHHHHHH-TCTTEEEEEECGGG
T ss_pred CEEEEEeeCCc--hHHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence 35677776653 2445555555555 58889999999854
No 37
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.15 E-value=0.0023 Score=57.75 Aligned_cols=30 Identities=3% Similarity=-0.167 Sum_probs=25.8
Q ss_pred hhhhHHhCCCcEEEEecCC-CCChhhhhccC
Q psy2008 3 ENQYSKALDKEASGYSRPK-THNISDAFNQK 32 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DP-a~sL~d~l~~~ 32 (311)
+|...|++|+||||+..|| ..+++..|+.+
T Consensus 25 LA~~La~~G~~VlliD~D~~q~~l~~~l~~~ 55 (286)
T 2xj4_A 25 LVTALLYGGAKVAVIDLDLRQRTSARFFENR 55 (286)
T ss_dssp HHHHHHHTTCCEEEEECCTTTCHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEEECCCCCCCHHHHhCCC
Confidence 4666677999999999999 99999999753
No 38
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=95.46 E-value=0.04 Score=48.92 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=38.1
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCc
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFY 238 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~ 238 (311)
..+++|+.++..+++.+...++.|+..|++ .++|+|++.++
T Consensus 162 ~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~ 202 (242)
T 3qxc_A 162 AKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNN 202 (242)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTC
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCc
Confidence 568999999999999999999999999999 99999999764
No 39
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.97 E-value=0.27 Score=47.39 Aligned_cols=21 Identities=5% Similarity=-0.092 Sum_probs=16.8
Q ss_pred hhhhHHhCCCcEEEEecCCCC
Q psy2008 3 ENQYSKALDKEASGYSRPKTH 23 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~ 23 (311)
++.+++++|+||++++.||..
T Consensus 120 LA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 120 LARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp HHHHHHTTTCCEEEEECCCSS
T ss_pred HHHHHHHCCCeEEEEeCCCcc
Confidence 455667789999999999865
No 40
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.35 E-value=0.5 Score=43.40 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.2
Q ss_pred cCCCcEEEEcCCCchHH
Q psy2008 112 GMNFSVVVFDTAPTGHT 128 (311)
Q Consensus 112 ~~~yD~IV~Dt~Ptg~t 128 (311)
..+||+||+||||..+.
T Consensus 189 ~~~yD~VIIDTpg~l~~ 205 (320)
T 1zu4_A 189 EQNYDLLLIDTAGRLQN 205 (320)
T ss_dssp HTTCSEEEEECCCCGGG
T ss_pred hcCCCEEEEcCCCcccc
Confidence 46799999999998653
No 41
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.33 E-value=0.36 Score=43.75 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=23.5
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFY 238 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~ 238 (311)
.+++|..+.. . .++.+....+.. .+++.++|+|++-+.
T Consensus 213 ~~~lv~~~~~-~-~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 213 EVLLVLDAMT-G-QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp EEEEEEEGGG-T-HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred EEEEEEeCCC-c-HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 4456666653 2 444444444443 377899999998553
No 42
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.93 E-value=0.25 Score=48.40 Aligned_cols=22 Identities=5% Similarity=-0.170 Sum_probs=16.8
Q ss_pred hhhHHhCCCcEEEEecCCCCCh
Q psy2008 4 NQYSKALDKEASGYSRPKTHNI 25 (311)
Q Consensus 4 ~~~aa~~G~rtLlvS~DPa~sL 25 (311)
+.+++++|+||++++.||..+.
T Consensus 122 A~~l~~~G~kVllVd~D~~r~a 143 (504)
T 2j37_W 122 AYYYQRKGWKTCLICADTFRAG 143 (504)
T ss_dssp HHHHHHTTCCEEEEEECCSSSH
T ss_pred HHHHHhCCCeEEEEeccccchh
Confidence 4455667999999999997643
No 43
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.14 E-value=0.35 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCcEEEEcCCCchHH
Q psy2008 105 EVLKLVKGMNFSVVVFDTAPTGHT 128 (311)
Q Consensus 105 ~l~~~~~~~~yD~IV~Dt~Ptg~t 128 (311)
+..+.+...+||+||+||||..|.
T Consensus 171 ~~l~~~~~~~~DvVIIDTaG~l~~ 194 (425)
T 2ffh_A 171 RVEEKARLEARDLILVDTAGRLQI 194 (425)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSSC
T ss_pred HHHHHHHHCCCCEEEEcCCCcccc
Confidence 334444446799999999997543
No 44
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.58 E-value=0.23 Score=42.68 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHhhhhHHHHHHHH
Q psy2008 100 AMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142 (311)
Q Consensus 100 ~~aL~~l~~~~~~~~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l 142 (311)
..++.++.+.+.+++||+||+|--...-++.+|+.++.+.++-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~ 148 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN 148 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH
Confidence 4567778888888999999999999999999999999886553
No 45
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=80.11 E-value=3.9 Score=42.41 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=51.2
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEEec
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTKLP 276 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp 276 (311)
.-+++|+...-.+++.+.-.++.|+..|+++.+||+|++-+.. .+.+.+.+....|+..+|
T Consensus 232 ~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~-------------------~~~l~~~l~~~~~v~vLg 292 (831)
T 4a0g_A 232 LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVN-------------------EVPLTSYLRNKVPVLVLP 292 (831)
T ss_dssp CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCT-------------------HHHHHHHTTTSSCEEEEC
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhH-------------------HHHHHHHHHhCCCceeeC
Confidence 4589999999999999999999999999999999999885431 234444443256777777
Q ss_pred CCCCCC
Q psy2008 277 LQSEEI 282 (311)
Q Consensus 277 ~~~~e~ 282 (311)
.++...
T Consensus 293 ~lP~~~ 298 (831)
T 4a0g_A 293 PVPKDP 298 (831)
T ss_dssp CCCCCT
T ss_pred CCCCCC
Confidence 776544
No 46
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=78.83 E-value=4.4 Score=38.79 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=14.3
Q ss_pred HHHhcCCCcEEEEcCCCch
Q psy2008 108 KLVKGMNFSVVVFDTAPTG 126 (311)
Q Consensus 108 ~~~~~~~yD~IV~Dt~Ptg 126 (311)
+.+...+||+||+|||+..
T Consensus 173 ~~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp HHTTTTTCSEEEEEECCCS
T ss_pred HHHHhcCCCEEEEECCCCc
Confidence 3344568999999999753
No 47
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=78.64 E-value=4 Score=37.93 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=50.3
Q ss_pred ceEEEEecCCcccH-----------HHHHHHHHHHHh-----cCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHH
Q psy2008 197 STFVCVCIAEFLSL-----------YETERLVQELAK-----TGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLD 260 (311)
Q Consensus 197 T~~~lVt~pe~l~v-----------~Et~rl~~~L~~-----~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~ 260 (311)
..+++|..|..-.+ +++..+++++.. .|++|-++++|..-+.+ ..++.+++
T Consensus 255 ~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~-------------~~~~~~~~ 321 (349)
T 2obn_A 255 TQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDE-------------YAAKEAIA 321 (349)
T ss_dssp SEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCH-------------HHHHHHHH
T ss_pred CeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCH-------------HHHHHHHH
Confidence 57899999876666 999999999977 88999999999876532 23566888
Q ss_pred HHHhhhcCCCcEEE
Q psy2008 261 QILDLYEEDFHVTK 274 (311)
Q Consensus 261 ~i~~~f~~~~pv~~ 274 (311)
++++.+ ++|++-
T Consensus 322 ~ie~~~--glPv~d 333 (349)
T 2obn_A 322 HTIAET--GLPCTD 333 (349)
T ss_dssp HHHHHH--CSCEEC
T ss_pred HHHHHH--CCCEEE
Confidence 999998 588765
No 48
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.21 E-value=9.7 Score=34.44 Aligned_cols=62 Identities=10% Similarity=-0.011 Sum_probs=32.6
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhhhcCCCcEEEec
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTKLP 276 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~pv~~vp 276 (311)
...++|.... .. .++......+.+ .+++.++|+|++-.... .. .+-.+...+ ++||..+-
T Consensus 224 ~~vllVlda~-t~-~~~l~~a~~~~~-~~~i~gvVlTk~D~~~~---gG------------~~l~~~~~~--~~Pi~~i~ 283 (306)
T 1vma_A 224 HETLLVIDAT-TG-QNGLVQAKIFKE-AVNVTGIILTKLDGTAK---GG------------ITLAIAREL--GIPIKFIG 283 (306)
T ss_dssp SEEEEEEEGG-GH-HHHHHHHHHHHH-HSCCCEEEEECGGGCSC---TT------------HHHHHHHHH--CCCEEEEE
T ss_pred cEEEEEEECC-CC-HHHHHHHHHHHh-cCCCCEEEEeCCCCccc---hH------------HHHHHHHHH--CCCEEEEe
Confidence 3455666554 22 233233333333 37789999999854321 11 112344444 58888875
Q ss_pred CC
Q psy2008 277 LQ 278 (311)
Q Consensus 277 ~~ 278 (311)
..
T Consensus 284 ~G 285 (306)
T 1vma_A 284 VG 285 (306)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 49
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=67.63 E-value=5.2 Score=36.78 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=15.7
Q ss_pred HHHhcCCCcEEEEcCCCchHH
Q psy2008 108 KLVKGMNFSVVVFDTAPTGHT 128 (311)
Q Consensus 108 ~~~~~~~yD~IV~Dt~Ptg~t 128 (311)
..++..+||+||+|||+-+.+
T Consensus 165 ~~~~~~~~~~iiiDTpGi~~~ 185 (355)
T 3p32_A 165 VLLEAAGFDVILIETVGVGQS 185 (355)
T ss_dssp HHHHHTTCCEEEEEECSCSSH
T ss_pred HHHhhCCCCEEEEeCCCCCcH
Confidence 445557899999999986543
No 50
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=67.58 E-value=49 Score=26.97 Aligned_cols=87 Identities=9% Similarity=0.014 Sum_probs=45.5
Q ss_pred EEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhh-----hcCCCcEE
Q psy2008 199 FVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDL-----YEEDFHVT 273 (311)
Q Consensus 199 ~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~-----f~~~~pv~ 273 (311)
+++|.......-.....++..++..++|+ -+|+||+=-.. ........ ....+.+.+. .. ..+++
T Consensus 119 vi~v~d~~~~~~~~~~~~~~~l~~~~~p~-i~v~nK~Dl~~-----~~~~~~~~---~~~~~~l~~~~~~~~~~-~~~~~ 188 (223)
T 4dhe_A 119 MILMMDARRPLTELDRRMIEWFAPTGKPI-HSLLTKCDKLT-----RQESINAL---RATQKSLDAYRDAGYAG-KLTVQ 188 (223)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHGGGCCCE-EEEEECGGGSC-----HHHHHHHH---HHHHHHHHHHHHHTCCS-CEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEeccccCC-----hhhHHHHH---HHHHHHHHhhhhcccCC-CCeEE
Confidence 44555444322245667788888888876 68899973211 11111111 1112223322 12 56777
Q ss_pred EecCCCCCCCCHHHHHHHHHHhcC
Q psy2008 274 KLPLQSEEIRGVAKVEAFSRMLVT 297 (311)
Q Consensus 274 ~vp~~~~e~~g~~~L~~l~~~l~~ 297 (311)
.+.... -.|++.|.......+.
T Consensus 189 ~~SA~~--g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 189 LFSALK--RTGLDDAHALIESWLR 210 (223)
T ss_dssp EEBTTT--TBSHHHHHHHHHHHHC
T ss_pred EeecCC--CcCHHHHHHHHHHhcC
Confidence 776553 3688877664444443
No 51
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=63.66 E-value=16 Score=34.63 Aligned_cols=21 Identities=5% Similarity=-0.039 Sum_probs=15.6
Q ss_pred hhhhHHhCCCcEEEEecCCCC
Q psy2008 3 ENQYSKALDKEASGYSRPKTH 23 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~ 23 (311)
++.+++++|+||++++.||..
T Consensus 119 La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 119 LARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp HHHHHHHHHCCEEEECCSCCC
T ss_pred HHHHHHHcCCeEEEEeccccC
Confidence 345555678899999998875
No 52
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=63.18 E-value=7.9 Score=26.24 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=25.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCc
Q psy2008 85 DVLNDLINGFPGIDEAMSYAEVLKLVKGMNFS 116 (311)
Q Consensus 85 ~~~~~~~~~~PG~~E~~aL~~l~~~~~~~~yD 116 (311)
..+.+++...++++|.++|.++..+...|+|.
T Consensus 26 ~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq 57 (61)
T 3ph0_C 26 ASIADWLAQEECMAECVTLIRLSSLMNQGDYQ 57 (61)
T ss_dssp HHHHHHHHTSSTTHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHccchHh
Confidence 45678999999999999999999999999885
No 53
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=61.67 E-value=9.5 Score=34.24 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCCcceEEEcCCcC
Q psy2008 210 LYETERLVQELAKTGIDTRNIIVNQLVF 237 (311)
Q Consensus 210 v~Et~rl~~~L~~~gi~v~~vvvNrv~~ 237 (311)
..+..++.+.+. .+++.++|+|++-.
T Consensus 226 ~~~~~~~~~~~~--~l~~~giVltk~D~ 251 (296)
T 2px0_A 226 YEDMKHIVKRFS--SVPVNQYIFTKIDE 251 (296)
T ss_dssp HHHHHHHTTTTS--SSCCCEEEEECTTT
T ss_pred HHHHHHHHHHHh--cCCCCEEEEeCCCc
Confidence 455555555544 46778999999854
No 54
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=60.08 E-value=12 Score=20.64 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcC
Q psy2008 170 SDNIAGKFEELLGNVREMNAQFRD 193 (311)
Q Consensus 170 ~d~~~~~l~~~~~~~~~~~~~L~d 193 (311)
.|++..+|+.+++++.++++-|++
T Consensus 3 adelykeledlqerlrklrkklrs 26 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367778889999999998887764
No 55
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=58.07 E-value=36 Score=33.10 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=14.9
Q ss_pred HHhcCCCcEEEEcCCCchHH
Q psy2008 109 LVKGMNFSVVVFDTAPTGHT 128 (311)
Q Consensus 109 ~~~~~~yD~IV~Dt~Ptg~t 128 (311)
+....+||+||+||+.-.|.
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~ 389 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQN 389 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCC
T ss_pred HHHhcCCCEEEEeCCCccch
Confidence 33346799999999987554
No 56
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=46.01 E-value=18 Score=35.59 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCcEEEEcCCCchHHHHhhhhHHHHHHHHHHHHHHHhhhchhhhhhhhhcCCCCCCchHHHHHHHHHHHHH
Q psy2008 105 EVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNV 184 (311)
Q Consensus 105 ~l~~~~~~~~yD~IV~Dt~Ptg~tLrlL~lP~~l~~~l~~l~~l~~k~~~~~~~l~~~~g~~~~~~d~~~~~l~~~~~~~ 184 (311)
.+.++.++.+||+||+-.+.|. +++..-++++.+++++.++
T Consensus 135 ~~~~~~~~~~~d~~i~e~~gt~---------------------------------------~di~~~~~~~~~rq~~~~~ 175 (550)
T 1vco_A 135 RIRKVAEEQKAEIVVVEVGGTV---------------------------------------GDIESLPFLEAIRQFRFDE 175 (550)
T ss_dssp HHHHHHHHTTCSEEEEEECSCT---------------------------------------TSSTTHHHHHHHHTHHHHH
T ss_pred HHHHHhcccCCCEEEEECCCCh---------------------------------------hHhhhHHHHHHHHHHhHhh
Confidence 3444444457999999888774 1344445555566655442
Q ss_pred HHHHHHhcCCCCceEEEEe-cC-----CcccHHHHHHHHHHHHhcCCCcceEEEcCCc
Q psy2008 185 REMNAQFRDPAKSTFVCVC-IA-----EFLSLYETERLVQELAKTGIDTRNIIVNQLV 236 (311)
Q Consensus 185 ~~~~~~L~dp~~T~~~lVt-~p-----e~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~ 236 (311)
- ++.+-|+=|| .| .++.-+-|+..+..|+..||.++++|+.-..
T Consensus 176 -------~-~~~~~~~h~~~~p~~~~~~e~ktkptq~sv~~lrs~gi~pd~lvvR~~~ 225 (550)
T 1vco_A 176 -------G-EGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSAR 225 (550)
T ss_dssp -------C-TTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEESS
T ss_pred -------C-cCCEEEEEEeCeecccCCCCcCCCCcchhHHHHhcCCCccCEEEEeCCC
Confidence 1 1234444443 23 4666788999999999999999999987543
No 57
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=45.74 E-value=30 Score=30.03 Aligned_cols=56 Identities=5% Similarity=-0.063 Sum_probs=33.9
Q ss_pred hhhhHHhCCCcEEEEecCCCCChhhh-hccCCCCCCeeeCCCCCeEEEEecchHHHH
Q psy2008 3 ENQYSKALDKEASGYSRPKTHNISDA-FNQKFTSTPTKVNGIDNLFAMEIDPNIRQT 58 (311)
Q Consensus 3 ~~~~aa~~G~rtLlvS~DPa~sL~d~-l~~~l~~~p~~v~~~~nL~a~eid~~~~~~ 58 (311)
++..++++|++|+++.+||..+.... +-..+..-|..+....|....|.|....+.
T Consensus 26 la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 26 AAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK 82 (228)
T ss_dssp HHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH
T ss_pred HHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh
Confidence 45666779999999999997776632 212233223222113566667777666544
No 58
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=35.56 E-value=1.3e+02 Score=29.48 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=43.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEe-cC-----CcccHHHHHHHHHHHHhcCCCcceEEEc
Q psy2008 166 ADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVC-IA-----EFLSLYETERLVQELAKTGIDTRNIIVN 233 (311)
Q Consensus 166 ~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lVt-~p-----e~l~v~Et~rl~~~L~~~gi~v~~vvvN 233 (311)
|++.+-++++.+++++.++ - ++.+-|+=|| .| .++--+-|+..++.|+..||..+.+|+=
T Consensus 148 gdies~pf~ea~rq~~~~~-------g-~~n~~~ih~tlvp~~~~~ge~ktkptqhsv~~Lrs~GIqPdilvcR 213 (535)
T 3nva_A 148 GDIESLPFLEAVRQLKLEE-------G-EDNVIFVHIALVEYLSVTGELKTKPLQHSVQELRRIGIQPDFIVGR 213 (535)
T ss_dssp TSGGGHHHHHHHHHHHHHH-------C-TTTEEEEEEEECCBCTTTSSBCCHHHHHHHHHHHHHTCCCSEEEEE
T ss_pred chhcccHHHHHHHHHHHHh-------C-CCCEEEEEeeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEe
Confidence 3677778888888887663 2 2335555443 33 5777888999999999999999998873
No 59
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=34.69 E-value=70 Score=31.18 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=43.9
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhhhc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYE 267 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~ 267 (311)
..++|..+-+-.-..|+.+|..+.++++|+ -+||||+=-+. .++ .+.++++++.|.
T Consensus 126 gAvlVvda~~GV~~qT~~v~~~a~~~~lp~-i~fINK~Dr~~-----ad~--------~~~~~~i~~~l~ 181 (548)
T 3vqt_A 126 SALVVIDAAKGVEAQTRKLMDVCRMRATPV-MTFVNKMDREA-----LHP--------LDVMADIEQHLQ 181 (548)
T ss_dssp EEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTSCC-----CCH--------HHHHHHHHHHHT
T ss_pred ceEEEeecCCCcccccHHHHHHHHHhCCce-EEEEecccchh-----cch--------hHhhhhhhhhcC
Confidence 567888888888899999999999999997 78999996432 222 245677888885
No 60
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=30.70 E-value=3.1e+02 Score=24.96 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=50.9
Q ss_pred ceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhhh----cCCCcE
Q psy2008 197 STFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLY----EEDFHV 272 (311)
Q Consensus 197 T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f----~~~~pv 272 (311)
..+++|..-+..+..++.+.+..++.+|++.--+|+||+=-.. .+... ...+++.+.+ ..+.|+
T Consensus 101 ~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~-----~~~~~-------~~~~~i~~~l~~~~~~~~~i 168 (403)
T 3sjy_A 101 GAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS-----KEEAL-------SQYRQIKQFTKGTWAENVPI 168 (403)
T ss_dssp EEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC-----HHHHH-------HHHHHHHHHHTTSTTTTCCE
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc-----hHHHH-------HHHHHHHHHHHhhCCCCCEE
Confidence 3444444444556888999999999999866578999983221 11111 1122333322 225677
Q ss_pred EEecCCCCCCCCHHHHHHHHHH-hcCC
Q psy2008 273 TKLPLQSEEIRGVAKVEAFSRM-LVTP 298 (311)
Q Consensus 273 ~~vp~~~~e~~g~~~L~~l~~~-l~~~ 298 (311)
+.+..... .|++.|...-.. +..+
T Consensus 169 i~vSA~~g--~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 169 IPVSALHK--INIDSLIEGIEEYIKTP 193 (403)
T ss_dssp EECBTTTT--BSHHHHHHHHHHHSCCC
T ss_pred EEEECCCC--cChHHHHHHHHHhCCCC
Confidence 77766543 588877765544 4433
No 61
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=29.02 E-value=2.8e+02 Score=26.16 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=29.6
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCc
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLV 236 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~ 236 (311)
.+++|..+..-...++.+.+..++..|+++ -+++|++=
T Consensus 99 ~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~D 136 (482)
T 1wb1_A 99 LALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSD 136 (482)
T ss_dssp EEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTT
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCC
Confidence 456666665555577888888899999999 99999983
No 62
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=28.59 E-value=47 Score=25.35 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=27.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCC
Q psy2008 85 DVLNDLINGFPGIDEAMSYAEVLKLVKGMNF 115 (311)
Q Consensus 85 ~~~~~~~~~~PG~~E~~aL~~l~~~~~~~~y 115 (311)
..+.+++...++ +|.+.|.++..++..|+|
T Consensus 26 ~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Y 55 (115)
T 2uwj_G 26 LCIAEWLERLGQ-DEAARLIRISSLANQGRY 55 (115)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHcchhH
Confidence 466788999999 999999999999999988
No 63
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=28.32 E-value=47 Score=25.35 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=27.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCC
Q psy2008 85 DVLNDLINGFPGIDEAMSYAEVLKLVKGMNF 115 (311)
Q Consensus 85 ~~~~~~~~~~PG~~E~~aL~~l~~~~~~~~y 115 (311)
..+.+++...++ +|.+.|.++..++..|+|
T Consensus 27 ~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Y 56 (116)
T 2p58_C 27 NCIAEWLHLKGE-EEAVQLIRLSSLMNRGDY 56 (116)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHcchhH
Confidence 466788999999 999999999999999998
No 64
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=26.75 E-value=31 Score=29.22 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=16.8
Q ss_pred hhhHHhCCCcEEEEecCCCCCh
Q psy2008 4 NQYSKALDKEASGYSRPKTHNI 25 (311)
Q Consensus 4 ~~~aa~~G~rtLlvS~DPa~sL 25 (311)
+.+.+ .|+||++++.||+.+.
T Consensus 35 a~~l~-~g~~v~vvd~D~~~~~ 55 (262)
T 1yrb_A 35 GRYLE-DNYKVAYVNLDTGVKE 55 (262)
T ss_dssp HHHHT-TTSCEEEEECCSSCSC
T ss_pred HHHHH-CCCeEEEEeCCCCccc
Confidence 34455 8999999999998764
No 65
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=25.76 E-value=67 Score=31.52 Aligned_cols=30 Identities=23% Similarity=0.208 Sum_probs=25.5
Q ss_pred CcccHHHHHHHHHHHHhcCCCcceEEEcCC
Q psy2008 206 EFLSLYETERLVQELAKTGIDTRNIIVNQL 235 (311)
Q Consensus 206 e~l~v~Et~rl~~~L~~~gi~v~~vvvNrv 235 (311)
.++.-+-|+.-.+.|+..||.++++|+--.
T Consensus 184 ge~ktkptq~sv~~l~s~gi~pd~lv~R~~ 213 (545)
T 1s1m_A 184 GEVKTKPTQHSVKELLSIGIQPDILICRSD 213 (545)
T ss_dssp TEECCHHHHHHHHHHHTTTCCCSEEEEEES
T ss_pred CCcCCCCCcCCHHHHhCCCCccCEEEEeCC
Confidence 456678899999999999999999998744
No 66
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=25.26 E-value=1.3e+02 Score=26.64 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=25.0
Q ss_pred HhcCCCCceEEEEecCC-cccHHHHHHHHHHHHhc--CCCcceEEEcCCc
Q psy2008 190 QFRDPAKSTFVCVCIAE-FLSLYETERLVQELAKT--GIDTRNIIVNQLV 236 (311)
Q Consensus 190 ~L~dp~~T~~~lVt~pe-~l~v~Et~rl~~~L~~~--gi~v~~vvvNrv~ 236 (311)
.+++.. .+++|..+. ..+ .....+++.++.. ++|+ -+|+|++=
T Consensus 83 ~l~~ad--~il~VvD~~~~~~-~~~~~i~~~l~~~~~~~p~-ilV~NK~D 128 (301)
T 1wf3_A 83 ALADVN--AVVWVVDLRHPPT-PEDELVARALKPLVGKVPI-LLVGNKLD 128 (301)
T ss_dssp HTSSCS--EEEEEEETTSCCC-HHHHHHHHHHGGGTTTSCE-EEEEECGG
T ss_pred HHhcCC--EEEEEEECCCCCC-hHHHHHHHHHHhhcCCCCE-EEEEECcc
Confidence 344532 444444443 333 3356677778777 7665 67889873
No 67
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.76 E-value=2.3e+02 Score=21.50 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=35.1
Q ss_pred HHhcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCCc
Q psy2008 189 AQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLV 236 (311)
Q Consensus 189 ~~L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv~ 236 (311)
+.|....+|.++.-..|......||...+.......-=....++|...
T Consensus 35 dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~ 82 (117)
T 3kin_B 35 DSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLEL 82 (117)
T ss_dssp HHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCC
T ss_pred HHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcC
Confidence 335555678888889999999999999988888754334456666443
No 68
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=21.73 E-value=1.1e+02 Score=25.75 Aligned_cols=36 Identities=31% Similarity=0.265 Sum_probs=32.6
Q ss_pred eEEEEecCCcccHHHHHHHHHHHHhcCCCcceEEEcCC
Q psy2008 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQL 235 (311)
Q Consensus 198 ~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~vvvNrv 235 (311)
..+||=..++++.+|+..+....+..+.+ -|++|..
T Consensus 123 s~lIVD~AekLS~kE~~~Lld~A~~~naq--vvll~~~ 158 (189)
T 2l8b_A 123 STVIVDQGEKLSLKETLTLLDGAARHNVQ--VLITDSG 158 (189)
T ss_dssp CEEEEEESSSHHHHHHHHHHHHHHHTTCC--EEEEESS
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhcCCE--EEEeCCc
Confidence 37999999999999999999999999954 4999987
No 69
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.66 E-value=85 Score=23.13 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=10.8
Q ss_pred HhcCCCcEEEEcC
Q psy2008 110 VKGMNFSVVVFDT 122 (311)
Q Consensus 110 ~~~~~yD~IV~Dt 122 (311)
+....+|+||+|.
T Consensus 44 l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 44 LRREKIDLVFVDV 56 (142)
T ss_dssp HTTSCCSEEEEEC
T ss_pred HhccCCCEEEEeC
Confidence 4556899999998
No 70
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=20.91 E-value=51 Score=27.82 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=12.3
Q ss_pred CCCcEEEEcCCCchH
Q psy2008 113 MNFSVVVFDTAPTGH 127 (311)
Q Consensus 113 ~~yD~IV~Dt~Ptg~ 127 (311)
.+||+||+|||+...
T Consensus 107 ~~~d~iiiDtpG~~~ 121 (262)
T 1yrb_A 107 KENDYVLIDTPGQME 121 (262)
T ss_dssp HHCSEEEEECCSSHH
T ss_pred hcCCEEEEeCCCccc
Confidence 359999999999743
No 71
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=20.24 E-value=51 Score=28.25 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=33.5
Q ss_pred hcCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCcceE
Q psy2008 191 FRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNI 230 (311)
Q Consensus 191 L~dp~~T~~~lVt~pe~l~v~Et~rl~~~L~~~gi~v~~v 230 (311)
+++.+...+++-|+|+--.-.-+..+.+.|+.+|++|..+
T Consensus 145 i~~~~v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~~vkvTRi 184 (212)
T 3vdp_A 145 VRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRI 184 (212)
T ss_dssp HHHSCCSEEEECCCSSHHHHHHHHHHHHHHTTTTCEEEEC
T ss_pred HhcCCCcEEEEECCCCccHHHHHHHHHHHhhhcCCCeeec
Confidence 4456678999999999988888999999999998877554
No 72
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=20.08 E-value=5.6e+02 Score=24.27 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=62.5
Q ss_pred CCceEEEEecCCc-------ccHHHHHHHHHHHHhcCCCcceEEEcCCcCcCccccchHHHHHHHHHHHHHHHHHHhhhc
Q psy2008 195 AKSTFVCVCIAEF-------LSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYE 267 (311)
Q Consensus 195 ~~T~~~lVt~pe~-------l~v~Et~rl~~~L~~~gi~v~~vvvNrv~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~f~ 267 (311)
++..|+.-..|-- -.+....+=++.+...|++-=+|...-+-... +..+-+.+....+.|...++++.+.+.
T Consensus 70 ~~V~Fv~aisPG~di~~s~~~d~~~L~~K~~ql~~lGVr~FaIlfDDI~~~~-~~~d~~~f~s~a~aQ~~l~N~v~~~l~ 148 (447)
T 2xsa_A 70 RGMVFYVSLAPCLDVTYSDPQDRAALLARVDQLARAGLRNLVLLFDDIPSVL-PEADRHRFDSFAEAQADLSNMVLRHLR 148 (447)
T ss_dssp TTCEEEEEECCCSSCCTTCHHHHHHHHHHHHHHHHTTCCEEEEECSSCCSSC-CTTTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHHHhCCCEEEEeccCCCCcc-chhhhhhhhhHHHHHHHHHHHHHHHhC
Confidence 4688999899931 12233333445566789988788766554321 101111223456788899999999987
Q ss_pred CCC-cEEEecCCCC------CCCCHHHHHHHHHHhcC
Q psy2008 268 EDF-HVTKLPLQSE------EIRGVAKVEAFSRMLVT 297 (311)
Q Consensus 268 ~~~-pv~~vp~~~~------e~~g~~~L~~l~~~l~~ 297 (311)
.. +++.+|.... .+.+-+-|+.|++.|-.
T Consensus 149 -~~~~l~~cPt~Y~~~~~~~~~~~s~Yl~~l~~~Ld~ 184 (447)
T 2xsa_A 149 -GAGHVVFCPTEYCGRMAGGDPRGSAYLQRLGSTLDP 184 (447)
T ss_dssp -TSSEEEEECSSCSHHHHTSSGGGCHHHHHHHHHSCT
T ss_pred -CCCceEEeChhhcCCcccCCCCCcHHHHHHHhhCCC
Confidence 44 8999997653 22334558888876543
Done!