RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2008
(311 letters)
>gnl|CDD|217004 pfam02374, ArsA_ATPase, Anion-transporting ATPase. This Pfam
family represents a conserved domain, which is sometimes
repeated, in an anion-transporting ATPase. The ATPase is
involved in the removal of arsenate, antimonite, and
arsenate from the cell.
Length = 304
Score = 278 bits (714), Expect = 2e-93
Identities = 111/274 (40%), Positives = 152/274 (55%), Gaps = 11/274 (4%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
H++SD+FNQKF PTK+ G++NL AMEIDP + E + + D N G M
Sbjct: 41 HSLSDSFNQKFGHEPTKIKGVENLSAMEIDPQMELEEYRGE--VQDPINAV----LGLDM 94
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
+ +L + ++ PGIDE S+ E K + + VV+FDTAPTGHTLRLLS P + L
Sbjct: 95 LEGILAEELSSLPGIDEIASFDEFKKYMDEGEYDVVIFDTAPTGHTLRLLSLPTVLSWYL 154
Query: 143 SKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCV 202
KI+ L+NQIGP + G+ EE + + DP +++F V
Sbjct: 155 EKIVKLKNQIGPLAKPFKGM-GMGGSCLPEALESLEETKEQIEKAREILSDPERTSFRLV 213
Query: 203 CIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQI 262
CI E +SLYETER +QELAK GID +IVNQ++ + C C R Q KYL +I
Sbjct: 214 CIPEKMSLYETERAIQELAKYGIDVDAVIVNQVL---PETEQCPFCEARKEIQQKYLKEI 270
Query: 263 LDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLV 296
+L+ D V KLPL EE+ G+ +E FS+ L
Sbjct: 271 EELF-SDLPVAKLPLLPEEVVGLEALEKFSQTLY 303
>gnl|CDD|232932 TIGR00345, GET3_arsA_TRC40, transport-energizing ATPase,
TRC40/GET3/ArsA family. Members of this family are
ATPases that energize transport, although with different
partner proteins for different functions. Recent
findings show that TRC40 (GET3 in yeast) in involved in
the insertion of tail-anchored membrane proteins in
eukaryotes. A similar function is expected for members
of this family in archaea. However, the earliest
discovery of a function for this protein family is ArsA,
an arsenic resistance protein that partners with ArsB
(see pfam02040) for As(III) efflux [Hypothetical
proteins, Conserved].
Length = 284
Score = 215 bits (550), Expect = 5e-69
Identities = 106/276 (38%), Positives = 149/276 (53%), Gaps = 19/276 (6%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQ-DDILSDEANGGSGNMFGGG 81
H++SD F Q+ TPTKV G++NL A+EIDP Q L + L ++ G N+ G
Sbjct: 25 HSLSDVFEQEIGHTPTKVTGVENLSAVEIDP---QAALEEYRAKLVEQIKG---NLPDGD 78
Query: 82 MINDVLNDLINGFPGIDEAMSYAEVLKLVK--GMNFSVVVFDTAPTGHTLRLLSFPQNIE 139
M+ D L PGIDE ++ E LK + F VV+FDTAPTGHTLRLL P+ +
Sbjct: 79 MLGDQLEGAALS-PGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGHTLRLLQLPEVLS 137
Query: 140 RGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTF 199
L K + +R+++GP LF A D K EEL + DP +++F
Sbjct: 138 SFLEKFIKIRSKLGPMAK----LFMGAGE-DDEALEKLEELKEQIEAAREILSDPERTSF 192
Query: 200 VCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYL 259
V V I E +SLYE+ER +ELAK GI +IVNQ++ + C R+ Q KYL
Sbjct: 193 VLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPEN---AQDEFCQARWELQQKYL 249
Query: 260 DQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRML 295
QI + + D V ++PLQ EE+ G+ ++ S+ L
Sbjct: 250 KQIPEKF-ADLPVAEVPLQKEEMVGLEALKRLSKTL 284
>gnl|CDD|223082 COG0003, ArsA, Predicted ATPase involved in chromosome partitioning
[Cell division and chromosome partitioning].
Length = 322
Score = 161 bits (410), Expect = 1e-47
Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 20/285 (7%)
Query: 22 THNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGG 81
H++ D F+ + P KV NL A+E+DP E + ++ + + +
Sbjct: 41 AHSLGDVFDLELGHDPRKV--GPNLDALELDP-----EKALEEYWDEVKDYLARL-LRTR 92
Query: 82 MINDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQN---- 137
+ + D + PGIDEA++ ++L+ + V+V DTAPTGHTLRLLS P+
Sbjct: 93 GLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWY 152
Query: 138 IERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKS 197
+E+ + L+ D + + EEL + ++ +P +
Sbjct: 153 LEKLFKPRRKRMVKALKSLSTAAGSPLPDDAVLEAL----EELKERIADVREVLTNPDGT 208
Query: 198 TFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAK 257
+F V I E LSLYET+R V+ L+ GI +IVN+++ A R + Q K
Sbjct: 209 SFRLVSIPEKLSLYETKRAVERLSLYGIPVDAVIVNKILPDEA---DQPFLEARRKIQQK 265
Query: 258 YLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPT 302
YL ++ + D V K+PL +EE G+ +E +L P
Sbjct: 266 YLKEL-EETFSDLAVVKVPLLAEEPVGLEALEKLGDLLYGDESPA 309
>gnl|CDD|238992 cd02035, ArsA, ArsA ATPase functionas as an efflux pump located on
the inner membrane of the cell. This ATP-driven oxyanion
pump catalyzes the extrusion of arsenite, antimonite and
arsenate. Maintenance of a low intracellular
concentration of oxyanion produces resistance to the
toxic agents. The pump is composed of two subunits, the
catalytic ArsA subunit and the membrane subunit ArsB,
which are encoded by arsA and arsB genes respectively.
Arsenic efflux in bacteria is catalyzed by either ArsB
alone or by ArsAB complex. The ATP-coupled pump,
however, is more efficient. ArsA is composed of two
homologous halves, A1 and A2, connected by a short
linker sequence.
Length = 217
Score = 153 bits (390), Expect = 9e-46
Identities = 68/262 (25%), Positives = 96/262 (36%), Gaps = 82/262 (31%)
Query: 14 ASGYSRPKTHNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGG 73
A S N+SDAF NL+ E+D R
Sbjct: 38 AHNLSDKGLPNLSDAFIV------EDPEIAPNLYREEVDATRR----------------- 74
Query: 74 SGNMFGGGMINDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLS 133
G ++ +L PGI+E S V + + V+VFDTAPTGHTLRLL
Sbjct: 75 --VERAWGGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLL- 131
Query: 134 FPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRD 193
VRE D
Sbjct: 132 --------------------------------------------------VRE---LLTD 138
Query: 194 PAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYR 253
P +++F V + E L LYETER + ELA GI ++VN+++ A VD + R +
Sbjct: 139 PERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLP--AEVDDDPFLAARRQ 196
Query: 254 TQAKYLDQILDLYEEDFHVTKL 275
Q KYL +I +L+ +D + +
Sbjct: 197 IQQKYLAEIEELF-DDLPIVPV 217
>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase. The
broader family (TIGR00345) to which the current family
belongs consists of transport-energizing ATPases,
including to TRC40/GET3 family involved in
post-translational insertion of protein C-terminal
transmembrane anchors into membranes from the cyotosolic
face. This family, however, is restricted to ATPases
that energize pumps that export arsenite (or
antimonite).
Length = 566
Score = 75.9 bits (187), Expect = 2e-15
Identities = 65/302 (21%), Positives = 113/302 (37%), Gaps = 65/302 (21%)
Query: 24 NISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGMI 83
N+ F Q + T + G+ LFA+EIDP + + I+ + G +
Sbjct: 44 NVGQVFGQTIGNKITAIAGVPGLFALEIDP-QAAAQAYRARIV---------DPVRGVLP 93
Query: 84 NDVLNDL-----------INGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLL 132
+DV++ + I F ++ AE+ + +F ++FDTAPTGHT+RLL
Sbjct: 94 DDVVSSIEEQLSGACTTEIAAFDEFTGLLTDAELTQ-----DFDHIIFDTAPTGHTIRLL 148
Query: 133 SFP-------QNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVR 185
P G S +G L GL ++ + +
Sbjct: 149 QLPGAWSDFLDTNPNGAS--------------CLGPLAGLEK-----QRAQYAKAV---- 185
Query: 186 EMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDAC 245
DP ++ + V + +L E R QELA G+ + +++N V
Sbjct: 186 ---EALSDPERTRLILVARPQKSTLLEVARTHQELAAIGLKNQYLVING-VLPPTEASDD 241
Query: 246 ALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPTNKI 305
L Y+ + K L Q + + LPL+ + G+ + R L+ +P +
Sbjct: 242 PLAQAIYKREQKAL-QHMPAILANLPRYTLPLKPYNLVGLEAL----RQLLNDDQPQLSL 296
Query: 306 SE 307
Sbjct: 297 DI 298
Score = 53.9 bits (130), Expect = 4e-08
Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 35/165 (21%)
Query: 117 VVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGK 176
VV DTAPTGHTL LL R + + +
Sbjct: 437 FVVMDTAPTGHTLLLLDATGAYHREVER------------------------KMGDTPEH 472
Query: 177 FEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLV 236
+ Q +DP ++ + V + E + E RL ++L + GI+ ++N +
Sbjct: 473 VTTPM-------MQLQDPERTKVLLVTLPETTPVLEAARLQEDLRRAGIEPWWWVINNSL 525
Query: 237 FYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTKLPLQSEE 281
+ + S R + + K+++++ ++ + + V PLQ+EE
Sbjct: 526 AATNTTSPL--LSQRAQNELKWIEKVKRIHADRYAVI--PLQAEE 566
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 32.4 bits (74), Expect = 0.31
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 96 GIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQ 136
G+ +S+ L+ ++ ++ SV V D A HT R S
Sbjct: 108 GVRTVLSHGSHLERLRAVDSSVTVHDLATAAHTNRSASLTP 148
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 31.6 bits (72), Expect = 0.54
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 127 HTLRLLSFPQNIERGLSKILALRNQ 151
H L LLS N+++GL+K++ L NQ
Sbjct: 596 HLLPLLSSSANLDQGLNKLIDLANQ 620
>gnl|CDD|212010 cd11620, HR1_PKC-like_2_fungi, Second Protein kinase C-related
kinase homology region 1 (HR1) Rho-binding domain of
fungal Protein Kinase C-like proteins. This subfamily
is composed of fungal PKC-like proteins including Pkc1p
from Saccharomyces cerevisiae, and Pck1p and Pck2p from
Schizosaccharomyces pombe. The yeast PKC-like proteins
play a critical role in regulating cell wall
biosynthesis and maintaining cell wall integrity. They
contain two HR1 domains, C2 and C1 domains, and a
kinase domain. This model characterizes the second HR1
domain. HR1 domains are anti-parallel coiled-coil (ACC)
domains that bind small GTPases from the Rho family.
The HR1 domains of Pck1p and Pck2p interact with
GTP-bound Rho1p and Rho2p.
Length = 72
Score = 27.3 bits (61), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 3 ENQYSKALDKEASGYSR-PKTHNISDAFNQKFTS 35
E QY + ++K A Y +I+DA N++ S
Sbjct: 21 EKQYKEGIEKMARLYQAEGDKRSIADAENKRVES 54
>gnl|CDD|165588 PHA03344, PHA03344, US22 family homolog; Provisional.
Length = 672
Score = 28.5 bits (63), Expect = 5.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 181 LGNVREMNAQFRDPAKSTFVCVCIAE 206
++ E QFR PAK VC+ AE
Sbjct: 541 FAHLEEAKRQFRHPAKGIPVCIVTAE 566
>gnl|CDD|227170 COG4833, COG4833, Predicted glycosyl hydrolase [Carbohydrate
transport and metabolism].
Length = 377
Score = 28.0 bits (62), Expect = 6.1
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 59 ELSQDDILSDEANGGSGNMFGGGMINDVLNDLINGFPG 96
++ +L EA GG G +F G+ L D+ PG
Sbjct: 247 HMTPLGVLRGEAGGGDGGLF-KGITARYLADVATTLPG 283
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 27.8 bits (62), Expect = 8.2
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 209 SLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYEE 268
+L E ++L+ E+A+ R + Q F VD C + Q + L I++ Y+E
Sbjct: 478 ALPERQKLILEVARM---IREAFLQQNAFDP--VDT--YCP--PQKQYRILRAIMNFYDE 528
Query: 269 DFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPTNKISERVDQ 311
+ + EEI + E RM +EP N I ++D+
Sbjct: 529 AMEALERGVPVEEILKLEVKEEIGRM---KYEPDNDILAKIDE 568
>gnl|CDD|182521 PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and
protease I and lysophospholipase L1; Provisional.
Length = 191
Score = 27.4 bits (61), Expect = 8.5
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 135 PQNIERGLSKILALRNQIG--PFLTQI 159
PQ E+ L +I+ P L QI
Sbjct: 90 PQQTEQTLRQIIQDVKAANAQPLLMQI 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.380
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,904,551
Number of extensions: 1555890
Number of successful extensions: 1391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1377
Number of HSP's successfully gapped: 21
Length of query: 311
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 214
Effective length of database: 6,635,264
Effective search space: 1419946496
Effective search space used: 1419946496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)