RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2008
(311 letters)
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 275 bits (706), Expect = 4e-92
Identities = 127/285 (44%), Positives = 172/285 (60%), Gaps = 14/285 (4%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
HN+SDAF KF KV G DNL AMEIDPN+ E +
Sbjct: 59 HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLS----------IQEMTEQADQQNPNNP 108
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
++ ++ DL PGIDEA+++AE+LK +K M F V+FDTAPTGHTLR L+FP +E+ L
Sbjct: 109 LSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKAL 168
Query: 143 SKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCV 202
K+ L ++ GP + Q+G++ G + ++ GK E + N+ E+N QF++P +TFVCV
Sbjct: 169 GKLGGLSSRFGPMINQMGSIMG-VNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCV 227
Query: 203 CIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQI 262
CI+EFLSLYETER++QEL IDT NI+VNQL+ C C R + Q KYL QI
Sbjct: 228 CISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL--DPNTTCPQCMARRKMQQKYLAQI 285
Query: 263 LDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPTNKISE 307
+LY EDFHV K+P E+RG +++FS MLV P+ E
Sbjct: 286 EELY-EDFHVVKVPQVPAEVRGTEALKSFSEMLVKPYVYPTSGKE 329
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 260 bits (665), Expect = 1e-85
Identities = 120/300 (40%), Positives = 173/300 (57%), Gaps = 27/300 (9%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
HN+SDAF QKF KV G+ NL MEIDP E + D+ + +
Sbjct: 60 HNLSDAFCQKFGKDARKVEGLPNLSCMEIDP-----EAAMSDLQQQASQYNNDPN---DP 111
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVK------------GMNFSVVVFDTAPTGHTLR 130
+ +++D+ PGIDEA+S+ EVLK +K +++ ++FDTAPTGHTLR
Sbjct: 112 LKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLR 171
Query: 131 LLSFPQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQ 190
L P +E+ LSK L ++GP L+ +G +I K E+ NV E+N Q
Sbjct: 172 FLQLPSTLEKLLSKFKDLSGKLGPMLSMMG------GGQQQDIFEKLNEVQKNVSEVNEQ 225
Query: 191 FRDPAKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCST 250
F +P +TF+CVCI+EFLSLYETER++QEL +D +I+VNQL+F +C C +
Sbjct: 226 FTNPELTTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCES 285
Query: 251 RYRTQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPTNKISERVD 310
R++ Q KYLDQ+ +LY ED+H+ K+PL EIRGV ++ FS+ L+ P++P D
Sbjct: 286 RWKMQKKYLDQMGELY-EDYHLVKMPLLGCEIRGVENLKKFSKFLLKPYDPKADSDIVFD 344
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 256 bits (656), Expect = 2e-84
Identities = 134/282 (47%), Positives = 173/282 (61%), Gaps = 12/282 (4%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
HN+SDAF+QKF V G DNL+AMEIDP + + D G +G+ G
Sbjct: 56 HNLSDAFSQKFGKEARLVEGFDNLYAMEIDP---------NGSMQDLLAGQTGDGDAGMG 106
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
V+ DL PGIDEAMS+AEVLK V +++ +VFDTAPTGHTLR L FP +E+ L
Sbjct: 107 GVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKAL 166
Query: 143 SKILALRNQIGPFLTQIGTLFGLA--DFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFV 200
+K+ L Q G L I G T ++ K + L + E+NAQF+D +TFV
Sbjct: 167 AKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFV 226
Query: 201 CVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLD 260
CVCI EFLSLYETER++QELA GIDT I+VNQ + + C C+ R R Q KYLD
Sbjct: 227 CVCIPEFLSLYETERMIQELANYGIDTHCIVVNQ-LLFPKPGSDCEQCTARRRMQKKYLD 285
Query: 261 QILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPT 302
QI +LY+E+F+V K+PL EE+RG ++E FS ML+ PF P
Sbjct: 286 QIEELYDEEFNVVKMPLLVEEVRGKERLEKFSEMLIKPFVPP 327
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 254 bits (649), Expect = 3e-83
Identities = 90/294 (30%), Positives = 143/294 (48%), Gaps = 15/294 (5%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
H++ D F Q+F PTKV G DNL+ +EIDP E + E N G M +
Sbjct: 66 HSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQL 125
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
++ PG DE+ ++ LK + F VV+FDTAPTGHTLR L P+ +++ +
Sbjct: 126 ------EMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYM 179
Query: 143 SKILALRNQIGPFLTQIGTLFGLA----DFTSDNIAGKFEELLGNVREMNAQFRDPAKST 198
+K++ LR Q+ F+ + L D D + + E++ + DP ++
Sbjct: 180 TKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTA 239
Query: 199 FVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKY 258
F V I E +S+ E+ER ++ L K GI +IVNQL+ C C R Q K
Sbjct: 240 FRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIP---EDVQCDFCRARRELQLKR 296
Query: 259 LDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPT-NKISERVDQ 311
L+ I + + D + +PL E +G+ ++ +++L E KI ++V Q
Sbjct: 297 LEMIKEKF-GDKVIAYVPLLRTEAKGIETLKQIAKILYGEEEKEEQKIEQKVGQ 349
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 249 bits (637), Expect = 2e-81
Identities = 127/289 (43%), Positives = 167/289 (57%), Gaps = 16/289 (5%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANG--GSGNMFGG 80
HN+SDAF +KF KV G++NL MEIDP+ +++ + NG G G+ G
Sbjct: 60 HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGS 119
Query: 81 GMINDVLNDLINGFPGIDEAMSYAEVLKLVK------GMNFSVVVFDTAPTGHTLRLLSF 134
+ L DL PGIDEA+S+ EV+K +K G F V+FDTAPTGHTLR L
Sbjct: 120 LLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQL 179
Query: 135 PQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDP 194
P + + L K + N++GP L +I+GK EL NV + QF DP
Sbjct: 180 PNTLSKLLEKFGEITNKLGPMLNSFMGAGN------VDISGKLNELKANVETIRQQFTDP 233
Query: 195 AKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVF-YSASVDACALCSTRYR 253
+TFVCVCI+EFLSLYETERL+QEL +D +IIVNQL+F + C C R++
Sbjct: 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWK 293
Query: 254 TQAKYLDQILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEPT 302
Q KYLDQI +LY EDFHV K+PL + EIRG+ + FS+ L + P
Sbjct: 294 MQKKYLDQIDELY-EDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPI 341
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 242 bits (618), Expect = 6e-79
Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 13/281 (4%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
H++SD+ ++ TPTK+ +NL+A+EIDP ++ + G M
Sbjct: 54 HSLSDSLEREIGHTPTKIT--ENLYAVEIDP----EVAMEEYQAKLQEQAAMNPGMGLDM 107
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
+ D + D+ + PGIDEA ++ + L+ + + +V+FDTAPTGHTLRLLSFP+ ++ +
Sbjct: 108 LQDQM-DMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWV 166
Query: 143 SKILALRNQIGPFLTQIGTLFGLA--DFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFV 200
K++ +R QIG + + D E + DP +++F
Sbjct: 167 GKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFK 226
Query: 201 CVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLD 260
V I E +S+YE+ER ++ L K I +IVNQ++ C C+ R + Q + L
Sbjct: 227 MVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLP---EESDCEFCNARRKLQQERLK 283
Query: 261 QILDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVTPFEP 301
QI + + D V ++PL +E +G+ +E + L EP
Sbjct: 284 QIREKF-SDKVVAEVPLLKKEAKGIETLEKIAEQLYGEPEP 323
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 214 bits (546), Expect = 3e-65
Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 25/272 (9%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
N+ F+Q +T + + L A+EIDP + + D G + +
Sbjct: 48 SNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRAR--IVDPIKGVLPDDVVSSI 105
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
+ DE L+ F ++FDTAPTGHT+RLL P +
Sbjct: 106 NEQLSGACTTEIAAFDEFTGLLTDASLLT--RFDHIIFDTAPTGHTIRLLQLPGAWSSFI 163
Query: 143 SKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCV 202
+ +GP E+ DP ++ V V
Sbjct: 164 DSNPEGASCLGPMA-------------------GLEKQREQYAYAVEALSDPKRTRLVLV 204
Query: 203 CIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQI 262
+ +L E R ELA G+ + +++N ++ + + + L + + + + L +
Sbjct: 205 ARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAAN-DTLAAAIWEREQEALANL 263
Query: 263 LDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRM 294
L LQ + GV+ +
Sbjct: 264 PADL-AGLPTDTLFLQPVNMVGVSALSRLLST 294
Score = 201 bits (513), Expect = 2e-60
Identities = 50/275 (18%), Positives = 95/275 (34%), Gaps = 54/275 (19%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
++S N +NL IDP+ +TE + +L E G + G +
Sbjct: 367 AHLSMTLNGSL----------NNLQVSRIDPH-EETERYRQHVL--ETKGKELDEAGKRL 413
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
+ + L P +E + ++++ VV DTAPTGHTL LL R +
Sbjct: 414 LEEDL-----RSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREI 468
Query: 143 SKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCV 202
+K + + +DP ++ + V
Sbjct: 469 AKKMGEKGH--------------------------------FTTPMMLLQDPERTKVLLV 496
Query: 203 CIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQI 262
+ E + E L +L + GI I+N + S + L R + + ++ +
Sbjct: 497 TLPETTPVLEAANLQADLERAGIHPWGWIINNSL--SIADTRSPLLRMRAQQELPQIESV 554
Query: 263 LDLYEEDFHVTKLPLQSEEIRGVAKVEAFSRMLVT 297
+ V +P+ + E G+ K++ +
Sbjct: 555 KRQH--ASRVALVPVLASEPTGIDKLKQLAGHHHH 587
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 183 bits (467), Expect = 1e-55
Identities = 40/289 (13%), Positives = 90/289 (31%), Gaps = 40/289 (13%)
Query: 23 HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
+ Q T P ++ NL ++ L + +E +
Sbjct: 41 PVLPLLLEQTLTPDPQQIA--PNLEVVQFQS---SVLLER---NWEEVKKLEAQYLRTPI 92
Query: 83 INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
I +V + PG+D A++ + + + +V+D TLR+L P+++ +
Sbjct: 93 IKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYV 152
Query: 143 SKILALRNQIG--------PFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDP 194
+ L P + + + F ++T+DN A ++ + + DP
Sbjct: 153 RRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADP 212
Query: 195 AKSTFVCVCIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRT 254
+ V A+ L + L + G+ +I
Sbjct: 213 KRVAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQV--------------------- 251
Query: 255 QAKYLDQILDLYEEDFHVTKLPLQSEEIRG--VAKVEAFSRMLVTPFEP 301
++ + + VT +P ++ + + F +P
Sbjct: 252 SSQTEGDLSAEF-TPLSVTVVPDVTKGDWQPLIDALPNFVEQAEQAPKP 299
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-05
Identities = 33/194 (17%), Positives = 62/194 (31%), Gaps = 65/194 (33%)
Query: 49 MEIDPNIRQTELSQDDILSDEANGGSGNMFGGGMINDVLND---LINGFPGIDEAMSYAE 105
M++ +T + D+ + A+ + +G +++ V+N+ L F G
Sbjct: 1633 MDL----YKTSKAAQDVW-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGE-------- 1679
Query: 106 VLKLVKG----MNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGP----FLT 157
KG N+S ++F+T G F + E S T
Sbjct: 1680 -----KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-----SEKGLLSAT 1729
Query: 158 QIGT-----LFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFV---------CVC 203
Q T L A F ++ ++ PA +TF
Sbjct: 1730 QF-TQPALTLMEKAAF----------------EDLKSKGLIPADATFAGHSLGEYAALAS 1772
Query: 204 IAEFLSLYETERLV 217
+A+ +S+ +V
Sbjct: 1773 LADVMSIESLVEVV 1786
Score = 43.1 bits (101), Expect = 1e-04
Identities = 62/375 (16%), Positives = 108/375 (28%), Gaps = 134/375 (35%)
Query: 23 HNISDAFNQKFTSTPTKVNG-IDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNM---F 78
H ++ Q+ +T K I N I R + + L G+ + F
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 79 GG-GMINDVLNDLINGF----PGIDEAMSY-AEVLK-LV-----------KGMNF----- 115
GG G +D +L + + + + + + AE L L+ +G+N
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 116 ------SVVVFDTAP----------TGH---TLRLLSF-PQNIE---RGLS--------- 143
+ P H T +LL F P + +G +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 144 KILALRNQIGPFLTQ----IGTLF--GL------------ADFTSDNIAG---------- 175
+A + F I LF G+ D++
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 176 ----KFEELLGNVREMNAQFRDPAKSTFVCVCIA------EF------LSLYETERLVQE 219
E++ V + N+ PA V I+ SLY L
Sbjct: 341 ISNLTQEQVQDYVNKTNSHL--PAGKQ---VEISLVNGAKNLVVSGPPQSLY---GLNLT 392
Query: 220 L----AKTGIDTRNIIVNQ--LVFYSASVDACALCSTRY-RTQA----KYLDQILDLYEE 268
L A +G+D I ++ L F S R+ + L DL +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKF-----------SNRFLPVASPFHSHLLVPASDLINK 441
Query: 269 DFHVTKLPLQSEEIR 283
D + +++I+
Sbjct: 442 DLVKNNVSFNAKDIQ 456
Score = 36.6 bits (84), Expect = 0.012
Identities = 49/280 (17%), Positives = 82/280 (29%), Gaps = 91/280 (32%)
Query: 15 SGYS-RPKT--H-NISDAFNQKFTSTPTKVNGI-----DNLFAMEIDPNIRQTELSQDDI 65
YS RP T H ++ PT I + + +P + DD
Sbjct: 2 DAYSTRPLTLSHGSLEHVL-----LVPTASFFIASQLQEQFNKILPEP---TEGFAADDE 53
Query: 66 LSDEANGGSGNMFGG--GMINDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTA 123
+ A + G G ++ ++ + + +VL L + F+
Sbjct: 54 PTTPAE-----LVGKFLGYVSSLVEP--------SKVGQFDQVLNLC------LTEFENC 94
Query: 124 PTG----HTLRLLSFPQNIERGLSKILA-LRNQIGPFLTQIGTLFGLADFTSDNIAGKFE 178
H L Q + L K ++N ++T A + K
Sbjct: 95 YLEGNDIHAL-AAKLLQENDTTLVKTKELIKN----YIT--------ARIMAKRPFDKKS 141
Query: 179 E--LLGNVREMNAQFRDPAKSTFVC--------VCIAEFLSLYETER-LVQELAKTGIDT 227
L V E NAQ E LY+T LV +L I
Sbjct: 142 NSALFRAVGEGNAQL-------VAIFGGQGNTDDYFEELRDLYQTYHVLVGDL----IKF 190
Query: 228 RNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYE 267
+++L+ ++DA K Q L++ E
Sbjct: 191 SAETLSELI--RTTLDA-----------EKVFTQGLNILE 217
Score = 33.1 bits (75), Expect = 0.13
Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 52/212 (24%)
Query: 126 GHTLRLLSFPQ-NIERGL-----SKILA--LRNQIGPFLTQIGTLFGLADFTSDNI--AG 175
++ R L+ ++E L S +A L+ Q L + F D + G
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 176 KFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLS--LYETE------RLVQELAKTGIDT 227
KF LG V + + + +C+ EF + L + +L+QE T + T
Sbjct: 63 KF---LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 228 RNIIVNQLVFYSASVDAC---------ALCSTRYRTQAK-------------YLDQILDL 265
+ +I N + +A + A AL A+ Y +++ DL
Sbjct: 120 KELIKN---YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 266 YE------EDFHVTKLPLQSEEIRGVAKVEAF 291
Y+ D SE IR E
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Score = 32.3 bits (73), Expect = 0.23
Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 87/196 (44%)
Query: 99 EAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILAL-RNQIGPFLT 157
+ MS ++++V RG++ +A+ R+++G
Sbjct: 1775 DVMSIESLVEVVF---------------------------YRGMTMQVAVPRDELG---- 1803
Query: 158 QIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLV 217
+ +G+ +A F + +V + + T LV
Sbjct: 1804 --RSNYGMIAINPGRVAASFSQ---------------EALQYVVERVGK-----RTGWLV 1841
Query: 218 QELAKTGIDTRNIIVN------QLVFYSASVDACALCSTRYRTQAKYLDQILD-LYEEDF 270
+ IVN Q V A+ D AL + +L+ + +
Sbjct: 1842 E------------IVNYNVENQQYV---AAGDLRAL---------DTVTNVLNFIKLQKI 1877
Query: 271 HVTKLP--LQSEEIRG 284
+ +L L EE+ G
Sbjct: 1878 DIIELQKSLSLEEVEG 1893
>1yoc_A Hypothetical protein PA1835; structural genomics, PSI, protein
structure initiati midwest center for structural
genomics, MCSG, sulfur SAD; 1.70A {Pseudomonas
aeruginosa} SCOP: d.38.1.5
Length = 147
Score = 31.1 bits (70), Expect = 0.20
Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 7/108 (6%)
Query: 115 FSVVVFDTAPTGHTLRLLSF---PQNIERGLSKILALRNQIGPFLTQIGTLFGLADFTSD 171
FS ++ AP ++ P E K + N IG L A+ +
Sbjct: 18 FSAMIGQFAPYFASIAPQFVELRPGYAEVTFPKRREVLNHIGTV--HAIALCNAAELAAG 75
Query: 172 NIAGKF--EELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETERLV 217
+ R M ++ A V + T LV
Sbjct: 76 TMTDASIPAGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLV 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.54
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 10/38 (26%)
Query: 253 RTQAKYLDQILDLYEEDFHVTKLP-LQSEEIRGVAKVE 289
+ K L L LY +D P L I+ A +E
Sbjct: 19 KQALKKLQASLKLYADD----SAPALA---IK--ATME 47
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 28.4 bits (63), Expect = 0.85
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 245 CALCSTRYRTQAKYLDQILDLYEE 268
C +C ++T YL + +D+Y +
Sbjct: 50 CTVCLEEFQTPITYLSEPVDVYSD 73
>1sh8_A Hypothetical protein PA5026; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.50A {Pseudomonas aeruginosa} SCOP:
d.38.1.5
Length = 154
Score = 27.2 bits (60), Expect = 4.5
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 160 GTLFGLADFTSDNIAGKFEELLGN-----VREMNAQFRDPAKSTFVCVCIAEFLSLYETE 214
G LF LA+ + V+EM +FR PAK L
Sbjct: 55 GALFTLAELPGGALF--LTSFDSARFYPIVKEMTLRFRRPAKGDIRVEAR---LDAERIR 109
Query: 215 RLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAK 257
+L E + G + +L + A + Y+ ++
Sbjct: 110 QLETEAGERG---KAEYSLELQLTDEQGEVVAESAALYQLRSH 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.380
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,691,470
Number of extensions: 291936
Number of successful extensions: 626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 25
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)