RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2008
         (311 letters)



>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
           {Escherichia coli [TaxId: 562]}
          Length = 296

 Score =  119 bits (298), Expect = 3e-32
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 25/269 (9%)

Query: 23  HNISDAFNQKFTSTPTKVNGIDNLFAMEIDPNIRQTELSQDDILSDEANGGSGNMFGGGM 82
            N+   F+Q   +T   +  +  L A+EIDP     +     +  D   G   +     +
Sbjct: 48  SNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRARIV--DPIKGVLPDDVVSSI 105

Query: 83  INDVLNDLINGFPGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGL 142
              +           DE         L+    F  ++FDTAPTGHT+RLL  P      +
Sbjct: 106 NEQLSGACTTEIAAFDEFTGLLTDASLLT--RFDHIIFDTAPTGHTIRLLQLPGAWSSFI 163

Query: 143 SKILALRNQIGPFLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCV 202
                  + +GP                       E+             DP ++  V V
Sbjct: 164 DSNPEGASCLGPM-------------------AGLEKQREQYAYAVEALSDPKRTRLVLV 204

Query: 203 CIAEFLSLYETERLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQI 262
              +  +L E  R   ELA  G+  + +++N ++  + + +   L +  +  + + L  +
Sbjct: 205 ARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAAN-DTLAAAIWEREQEALANL 263

Query: 263 LDLYEEDFHVTKLPLQSEEIRGVAKVEAF 291
                       L LQ   + GV+ +   
Sbjct: 264 PADL-AGLPTDTLFLQPVNMVGVSALSRL 291


>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
           {Escherichia coli [TaxId: 562]}
          Length = 279

 Score = 94.7 bits (234), Expect = 3e-23
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 36/201 (17%)

Query: 95  PGIDEAMSYAEVLKLVKGMNFSVVVFDTAPTGHTLRLLSFPQNIERGLSKILALRNQIGP 154
           P  +E   +    ++++      VV DTAPTGHTL LL       R ++K +  +     
Sbjct: 114 PCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEK----- 168

Query: 155 FLTQIGTLFGLADFTSDNIAGKFEELLGNVREMNAQFRDPAKSTFVCVCIAEFLSLYETE 214
                                      G+        +DP ++  + V + E   + E  
Sbjct: 169 ---------------------------GHFTTPMMLLQDPERTKVLLVTLPETTPVLEAA 201

Query: 215 RLVQELAKTGIDTRNIIVNQLVFYSASVDACALCSTRYRTQAKYLDQILDLYEEDFHVTK 274
            L  +L + GI     I+N  +    +     L   R + +   ++ +   +     V  
Sbjct: 202 NLQADLERAGIHPWGWIINNSLS--IADTRSPLLRMRAQQELPQIESVKRQHAS--RVAL 257

Query: 275 LPLQSEEIRGVAKVEAFSRML 295
           +P+ + E  G+ K++  +   
Sbjct: 258 VPVLASEPTGIDKLKQLAGHH 278


>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 25.9 bits (57), Expect = 1.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 245 CALCSTRYRTQAKYLDQILDLYEE 268
           C +C   ++T   YL + +D+Y +
Sbjct: 50  CTVCLEEFQTPITYLSEPVDVYSD 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,108,779
Number of extensions: 51496
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 6
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)