BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2017
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DQC|A Chain A, Solution Structure Of Tachycitin, An Antimicrobial
          Protein With Chitin-Binding Function
          Length = 74

 Score = 36.2 bits (82), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 44 CNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
          C  FYNC +  +    CP GLH++ Y   C WP  AG
Sbjct: 24 CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAG 60


>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
           Cyclopentapeptide Inhibitor Argadin Against Human
           Chitinase
 pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
           Cyclopentapeptide Inhibitor Argifin Against Human
           Chitinase
          Length = 445

 Score = 33.5 bits (75), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 20  PEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVW 75
           P P Q ++   + +G + +P E+  + FY+C  G   +  CPTGL F      C W
Sbjct: 391 PSPGQDTFCQGKADGLYPNPRER--SSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444



 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 195 QKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVF 228
           + +G Y +P +   +Y C  G+  ++ CP GLVF
Sbjct: 402 KADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVF 435


>pdb|4EXA|A Chain A, Crystal Structure Of The Pa4992, The Putative Aldo-keto
           Reductase From Pseudomona Aeruginosa
 pdb|4EXA|B Chain B, Crystal Structure Of The Pa4992, The Putative Aldo-keto
           Reductase From Pseudomona Aeruginosa
 pdb|4EXA|C Chain C, Crystal Structure Of The Pa4992, The Putative Aldo-keto
           Reductase From Pseudomona Aeruginosa
 pdb|4EXA|D Chain D, Crystal Structure Of The Pa4992, The Putative Aldo-keto
           Reductase From Pseudomona Aeruginosa
 pdb|4EXA|E Chain E, Crystal Structure Of The Pa4992, The Putative Aldo-keto
           Reductase From Pseudomona Aeruginosa
 pdb|4EXA|F Chain F, Crystal Structure Of The Pa4992, The Putative Aldo-keto
           Reductase From Pseudomona Aeruginosa
 pdb|4EXB|A Chain A, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
 pdb|4EXB|B Chain B, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
 pdb|4EXB|C Chain C, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
 pdb|4EXB|D Chain D, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
 pdb|4EXB|E Chain E, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
 pdb|4EXB|F Chain F, Putative Aldo-keto Reductase From Pseudomona Aeruginosa
          Length = 292

 Score = 27.7 bits (60), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 70  TGTCVWPESAGRIGCGEPEGMTLKDGFTCPKEQKAS 105
           TG  V P   G +  G  +G+    GFT P +++A+
Sbjct: 38  TGLAVSPLGLGTVKFGRDQGVKYPSGFTIPDDREAA 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.139    0.464 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,498,799
Number of Sequences: 62578
Number of extensions: 362248
Number of successful extensions: 584
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 7
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)