Query psy2017
Match_columns 255
No_of_seqs 222 out of 1577
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 22:06:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01607 CBM_14: Chitin bindin 99.2 5.4E-12 1.2E-16 80.9 2.3 48 196-246 5-53 (53)
2 PF01607 CBM_14: Chitin bindin 99.2 2.2E-11 4.8E-16 78.0 3.4 48 29-78 1-49 (53)
3 smart00494 ChtBD2 Chitin-bindi 99.1 1E-10 2.2E-15 75.6 5.1 53 192-247 2-55 (56)
4 smart00494 ChtBD2 Chitin-bindi 99.1 3.4E-10 7.4E-15 73.1 5.4 51 28-80 2-53 (56)
5 PF03427 CBM_19: Carbohydrate 87.8 0.49 1.1E-05 30.7 2.2 21 207-227 35-55 (61)
6 PF03427 CBM_19: Carbohydrate 81.2 1.9 4.1E-05 28.1 2.7 36 24-66 18-56 (61)
7 PF08475 Baculo_VP91_N: Viral 67.3 7.1 0.00015 31.4 3.4 35 39-75 108-142 (183)
8 PF08475 Baculo_VP91_N: Viral 53.9 12 0.00025 30.2 2.5 37 200-241 107-143 (183)
9 PF12662 cEGF: Complement Clr- 45.3 15 0.00033 19.1 1.3 17 138-154 5-21 (24)
10 PF09064 Tme5_EGF_like: Thromb 41.3 16 0.00034 20.8 1.0 12 220-231 20-31 (34)
11 PF01826 TIL: Trypsin Inhibito 36.9 13 0.00029 23.2 0.3 18 59-77 36-53 (55)
12 cd00064 FU Furin-like repeats. 27.0 59 0.0013 19.6 2.1 20 133-152 29-48 (49)
13 PF00220 Hormone_4: Neurohypop 26.2 36 0.00077 13.4 0.6 7 136-142 3-9 (9)
No 1
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.21 E-value=5.4e-12 Score=80.95 Aligned_cols=48 Identities=50% Similarity=1.125 Sum_probs=37.2
Q ss_pred CCCcccCCcCCcccEEccCCeeEeccCCCCCccCcCCCCCCCCCCCCc-ccC
Q psy2017 196 KNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFN-VEC 246 (255)
Q Consensus 196 ~~g~~~~~~~C~~y~~C~~g~~~~~~Cp~G~~Fd~~~~~~~~C~~~~~-v~C 246 (255)
.+|+++++.+|++||+|.+|.++++.||.|++||+. +++|+++.+ +.|
T Consensus 5 ~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~---~~~C~~~~~~~~C 53 (53)
T PF01607_consen 5 GDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPS---SQRCVPPSNVVQC 53 (53)
T ss_dssp SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TT---TSSEE-TTT-TT-
T ss_pred CCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcC---cCEEcCCccCCCC
Confidence 478999999999999999999999999999999996 799999999 666
No 2
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.16 E-value=2.2e-11 Score=78.03 Aligned_cols=48 Identities=38% Similarity=0.996 Sum_probs=36.1
Q ss_pred CCC-CCCcccCCCCcCCCccEEcCCCceEEeeCCCCCeeeCCCCcccCCCc
Q psy2017 29 CPR-RNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPES 78 (255)
Q Consensus 29 C~~-~~G~~~~p~p~~C~~y~~C~~g~~~~~~Cp~g~~Fd~~~~~C~~~~~ 78 (255)
|.. .+|+| +++.+|++||+|.+|.++++.||.|++||+.++.|+++..
T Consensus 1 C~~~~~~~~--~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~ 49 (53)
T PF01607_consen 1 CPGRGDGFY--PHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSN 49 (53)
T ss_dssp ----SSEEE----SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT
T ss_pred CCccCCeeE--eCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCcc
Confidence 443 57888 6689999999999999999999999999999999999988
No 3
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.12 E-value=1e-10 Score=75.61 Aligned_cols=53 Identities=49% Similarity=1.130 Sum_probs=47.7
Q ss_pred ccCC-CCCcccCCcCCcccEEccCCeeEeccCCCCCccCcCCCCCCCCCCCCcccCC
Q psy2017 192 KCPQ-KNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECG 247 (255)
Q Consensus 192 ~C~~-~~g~~~~~~~C~~y~~C~~g~~~~~~Cp~G~~Fd~~~~~~~~C~~~~~v~C~ 247 (255)
.|.. ..|+|+++.+|++||+|.+|.++.+.||.|++||.. ++.|+++..+.|.
T Consensus 2 ~C~~~~~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~---~~~C~~~~~~~C~ 55 (56)
T smart00494 2 ECPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPA---TQTCDWPDNVGCG 55 (56)
T ss_pred cCCCCCCccccCcccCCeeEEcCCCcEEeccCcCCCeECCC---CCCcCCcccCCCC
Confidence 3544 478999999999999999999999999999999996 6999999999886
No 4
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.06 E-value=3.4e-10 Score=73.13 Aligned_cols=51 Identities=39% Similarity=0.962 Sum_probs=45.5
Q ss_pred CCCC-CCCcccCCCCcCCCccEEcCCCceEEeeCCCCCeeeCCCCcccCCCccC
Q psy2017 28 LCPR-RNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80 (255)
Q Consensus 28 ~C~~-~~G~~~~p~p~~C~~y~~C~~g~~~~~~Cp~g~~Fd~~~~~C~~~~~~~ 80 (255)
.|.. .+|+| +++.+|++|++|.++.++.+.||.|++||..++.|+++..+.
T Consensus 2 ~C~~~~~g~~--~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~ 53 (56)
T smart00494 2 ECPGRGDGLY--PHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVG 53 (56)
T ss_pred cCCCCCCccc--cCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCC
Confidence 5764 56888 778899999999999999999999999999999999998764
No 5
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=87.76 E-value=0.49 Score=30.74 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.4
Q ss_pred cccEEccCCeeEeccCCCCCc
Q psy2017 207 DKYYECFDGQATEKLCPDGLV 227 (255)
Q Consensus 207 ~~y~~C~~g~~~~~~Cp~G~~ 227 (255)
.+|-+|.+|+++.+.||+|++
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCE
Confidence 479999999999999999986
No 6
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=81.18 E-value=1.9 Score=28.09 Aligned_cols=36 Identities=25% Similarity=0.554 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCcccCCCCcCC---CccEEcCCCceEEeeCCCCCee
Q psy2017 24 QGSYLCPRRNGYFAHPDEKVC---NIFYNCIEGDSTEIICPTGLHF 66 (255)
Q Consensus 24 ~~~~~C~~~~G~~~~p~p~~C---~~y~~C~~g~~~~~~Cp~g~~F 66 (255)
.....|.. +|.| -| .+|-+|.+|.++...||+|++-
T Consensus 18 ~~g~sc~t-~G~~------aCt~~G~faiC~~G~Wv~~~C~~Gt~C 56 (61)
T PF03427_consen 18 YNGQSCST-DGEY------ACTSDGSFAICDHGTWVITPCPAGTTC 56 (61)
T ss_pred cCCCccCC-CCce------eEcCCCCEEEcCCCcEEEeeCCCCCEE
Confidence 33445542 4666 26 3599999999999999999863
No 7
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=67.25 E-value=7.1 Score=31.38 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=32.1
Q ss_pred CCCcCCCccEEcCCCceEEeeCCCCCeeeCCCCcccC
Q psy2017 39 PDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVW 75 (255)
Q Consensus 39 p~p~~C~~y~~C~~g~~~~~~Cp~g~~Fd~~~~~C~~ 75 (255)
+++.|=++|..=.+..+..+.||.+..||.. +|+.
T Consensus 108 ~~~~d~~kF~~~~DDGwv~~~CP~~~~FD~~--~Cvp 142 (183)
T PF08475_consen 108 PHPNDPTKFIARGDDGWVDMDCPENERFDGN--KCVP 142 (183)
T ss_pred cCCCCCceEEEEecCCcEEEeCCCccccccc--ceee
Confidence 6778999999999888999999999999999 9995
No 8
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=53.91 E-value=12 Score=30.16 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=31.3
Q ss_pred ccCCcCCcccEEccCCeeEeccCCCCCccCcCCCCCCCCCCC
Q psy2017 200 YEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQP 241 (255)
Q Consensus 200 ~~~~~~C~~y~~C~~g~~~~~~Cp~G~~Fd~~~~~~~~C~~~ 241 (255)
-+|+.+=+||..=.+-.++.+.||.+..||. .+|+..
T Consensus 107 ~~~~~d~~kF~~~~DDGwv~~~CP~~~~FD~-----~~Cvp~ 143 (183)
T PF08475_consen 107 RPHPNDPTKFIARGDDGWVDMDCPENERFDG-----NKCVPI 143 (183)
T ss_pred ecCCCCCceEEEEecCCcEEEeCCCcccccc-----cceeec
Confidence 3578888999998886799999999999999 378863
No 9
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=45.26 E-value=15 Score=19.10 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=13.9
Q ss_pred CCCCCCccccCCCCCCC
Q psy2017 138 GCQVGEVYNEESQKCDA 154 (255)
Q Consensus 138 ~Cp~G~~Fd~~~~~C~~ 154 (255)
.|++|+..++..+.|.-
T Consensus 5 ~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCED 21 (24)
T ss_pred eCCCCCcCCCCCCcccc
Confidence 68999999888888763
No 10
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=41.29 E-value=16 Score=20.79 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=8.2
Q ss_pred ccCCCCCccCcC
Q psy2017 220 KLCPDGLVFDPL 231 (255)
Q Consensus 220 ~~Cp~G~~Fd~~ 231 (255)
=.||.|++.|+.
T Consensus 20 C~CPeGyIlde~ 31 (34)
T PF09064_consen 20 CFCPEGYILDEG 31 (34)
T ss_pred eeCCCceEecCC
Confidence 357777777763
No 11
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=36.88 E-value=13 Score=23.20 Aligned_cols=18 Identities=39% Similarity=0.910 Sum_probs=15.3
Q ss_pred eCCCCCeeeCCCCcccCCC
Q psy2017 59 ICPTGLHFDEYTGTCVWPE 77 (255)
Q Consensus 59 ~Cp~g~~Fd~~~~~C~~~~ 77 (255)
.|+.|+++|.. +.|+.+.
T Consensus 36 ~C~~G~v~~~~-~~CV~~~ 53 (55)
T PF01826_consen 36 FCPPGYVRNDN-GRCVPPS 53 (55)
T ss_dssp EETTTEEEETT-SEEEEGG
T ss_pred CCCCCeeEcCC-CCEEcHH
Confidence 68999999998 8998654
No 12
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=27.00 E-value=59 Score=19.56 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=13.8
Q ss_pred ccceeCCCCCCccccCCCCC
Q psy2017 133 TPREQGCQVGEVYNEESQKC 152 (255)
Q Consensus 133 ~~~~~~Cp~G~~Fd~~~~~C 152 (255)
..=+..||.++++|.....|
T Consensus 29 ~~Cv~~C~~~~~~~~~~~~C 48 (49)
T cd00064 29 GTCVSECPEGTYADTEGGVC 48 (49)
T ss_pred CcccccCCCCceecCcCCcC
Confidence 33444789999888666655
No 13
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=26.16 E-value=36 Score=13.37 Aligned_cols=7 Identities=29% Similarity=0.961 Sum_probs=3.5
Q ss_pred eeCCCCC
Q psy2017 136 EQGCQVG 142 (255)
Q Consensus 136 ~~~Cp~G 142 (255)
.++||.|
T Consensus 3 i~nCP~G 9 (9)
T PF00220_consen 3 IRNCPIG 9 (9)
T ss_pred cccCCCC
Confidence 3456544
Done!