RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2017
         (255 letters)



>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain.  This
           domain is called the Peritrophin-A domain and is found
           in chitin binding proteins particularly peritrophic
           matrix proteins of insects and animal chitinases. Copies
           of the domain are also found in some baculoviruses.
           Relevant references that describe proteins with this
           domain include. It is an extracellular domain that
           contains six conserved cysteines that probably form
           three disulphide bridges. Chitin binding has been
           demonstrated for a protein containing only two of these
           domains.
          Length = 53

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 116 YAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGC 161
           Y  P DC K+Y C NG       C  G V++     CD P+NV  C
Sbjct: 9   YPDPGDCSKYYQCSNGK-AVVFTCPAGLVFDPALGTCDYPDNVVDC 53



 Score = 50.5 bits (121), Expect = 6e-09
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 31 RRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESA 79
          R +G +  P +  C+ +Y C  G +    CP GL FD   GTC +P++ 
Sbjct: 4  RPDGLYPDPGD--CSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDNV 50



 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 195 QKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNV 244
           + +G Y DP  C KYY+C +G+A    CP GLVFDP    +  CD P NV
Sbjct: 4   RPDGLYPDPGDCSKYYQCSNGKAVVFTCPAGLVFDP---ALGTCDYPDNV 50


>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2. 
          Length = 49

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 191 FKCPQK-NGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQP 241
            +CP + +G Y  P  C KYY+C +G+     CP GLVF+P       CD P
Sbjct: 1   NECPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNP---ATQTCDWP 49



 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 109 QSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAP 155
                 +Y HPTDC K+Y C NG  P    C  G V+N  +Q CD P
Sbjct: 4   PGRGDGLYPHPTDCSKYYQCSNG-RPIVGSCPAGLVFNPATQTCDWP 49



 Score = 47.4 bits (113), Expect = 7e-08
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 30 PRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWP 76
           R +G + HP +  C+ +Y C  G      CP GL F+  T TC WP
Sbjct: 5  GRGDGLYPHPTD--CSKYYQCSNGRPIVGSCPAGLVFNPATQTCDWP 49


>gnl|CDD|226736 COG4286, COG4286, Uncharacterized conserved protein related to MYG1
           family [Function unknown].
          Length = 306

 Score = 27.8 bits (62), Expect = 6.1
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 209 YYECFDGQATEKLCPDGLVFDPLNRK-INKCDQPFNVECGDRL 250
           + E F  +   KL   GL++    R  +       + +  + L
Sbjct: 72  FNETFSPKYKTKLSSAGLIYKYFGRDGLATYGINRSEDDLETL 114


>gnl|CDD|239466 cd03368, Ribosomal_S12, S12-like family, 30S ribosomal protein S12
           subfamily; S12 is located at the interface of the large
           and small ribosomal subunits of prokaryotes,
           chloroplasts and mitochondria, where it plays an
           important role in both tRNA and ribosomal subunit
           interactions. S12 is essential for maintenance of a
           pretranslocation state and, together with S13, functions
           as a control element for the rRNA- and tRNA-driven
           movements of translocation. Antibiotics such as
           streptomycin bind S12 and cause the ribosome to misread
           the genetic code.
          Length = 108

 Score = 26.3 bits (59), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 177 KKPGKKIRRRRNAAFK-CPQKNG 198
           K   KK ++ ++ A + CPQK G
Sbjct: 8   KGRKKKKKKSKSPALEGCPQKKG 30


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.138    0.455 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,848,531
Number of extensions: 1149673
Number of successful extensions: 771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 769
Number of HSP's successfully gapped: 12
Length of query: 255
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 160
Effective length of database: 6,723,972
Effective search space: 1075835520
Effective search space used: 1075835520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)