RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2017
(255 letters)
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus
tridentatus} SCOP: g.31.1.1
Length = 74
Score = 58.3 bits (141), Expect = 8e-12
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 190 AFKCPQ-----KNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNV 244
AF+C + +G + C +Y C A + CP GL ++ + CD P
Sbjct: 3 AFRCGRYSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNA---YLKVCDWPSKA 59
Query: 245 ECGDR 249
C
Sbjct: 60 GCTSV 64
Score = 55.2 bits (133), Expect = 1e-10
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 25 GSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
G Y +G + C FYNC + + CP GLH++ Y C WP AG
Sbjct: 7 GRYSPCLDDGPNVNLYS--CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAG 60
Score = 51.7 bits (124), Expect = 2e-09
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 95 GFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDA 154
F C + G + C FY C + R + C G YN + CD
Sbjct: 3 AFRCGRYSPCLDDG------PNVNLYSCCSFYNCHKCL-ARLENCPKGLHYNAYLKVCDW 55
Query: 155 PENVPGCEN 163
P GC +
Sbjct: 56 PSKA-GCTS 63
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 51.6 bits (124), Expect = 6e-08
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 169 PAAAPQAAKKPGKKIRRRRNAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVF 228
P +P ++ + +G Y +P + +Y C G+ ++ CP GLVF
Sbjct: 377 EVPKPGQPSEPEHGPSPGQDTFCQGKA-DGLYPNPRERSSFYSCAAGRLFQQSCPTGLVF 435
Query: 229 DPLNRKINKCD 239
C
Sbjct: 436 SN---SCKCCT 443
Score = 50.1 bits (120), Expect = 2e-07
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 20 PEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVW 75
P P Q ++ + +G + +P E + FY+C G + CPTGL F C W
Sbjct: 391 PSPGQDTFCQGKADGLYPNPRE--RSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444
Score = 47.4 bits (113), Expect = 2e-06
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 97 TCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCD 153
+ Q A +Y +P + FY C G +Q C G V++ + C
Sbjct: 388 EHGPSPGQDTFCQGKADGLYPNPRERSSFYSCAAG-RLFQQSCPTGLVFSNSCKCCT 443
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.009
Identities = 51/303 (16%), Positives = 85/303 (28%), Gaps = 119/303 (39%)
Query: 1 MGKGEYEK-----------------EYSFQTISLFIPEP---------PQGSYLCPRRNG 34
MG Y+ Y F + + I P +G + R
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI---REN 1687
Query: 35 YFAHPDEKVCNIFYNCIEGD-STEIICPTGLHFDEYTGTCVWPESAGRIGCGEPEGMTLK 93
Y A IF ++G TE I +E++ + + +G L
Sbjct: 1688 YSAM-------IFETIVDGKLKTEKIFKE---INEHSTSYTF---------RSEKG-LLS 1727
Query: 94 D-GFTCP-------------KEQKASSSGQSVA-HPV--Y-AHPTDCQKFYVCLNGVTPR 135
FT P K + + + A H + Y A L V
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA--------LASLADVMSI 1779
Query: 136 EQGCQV----GEVYNEESQKCDAPENVPGCENW--FADDPAA-----APQAAKKPGKKIR 184
E +V G P + G N+ A +P + +A + +++
Sbjct: 1780 ESLVEVVFYRGMTMQVA-----VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 185 RRRN-----AAFKCPQKNGQYEDPVQC--DKYYECFDGQATEKLCPDGLVFDPLNR-KIN 236
+R + N QY V D +A + + + LN K+
Sbjct: 1835 KRTGWLVEIVNYNVE--NQQY---V-AAGDL-------RALDTVT------NVLNFIKLQ 1875
Query: 237 KCD 239
K D
Sbjct: 1876 KID 1878
Score = 27.3 bits (60), Expect = 6.0
Identities = 37/205 (18%), Positives = 60/205 (29%), Gaps = 53/205 (25%)
Query: 55 STE--IICPTGLHF------DEYTGTCVWPESAGRIGCGEPEGMTLKDGFTCPKEQKASS 106
S E ++ PT F +++ PE EG D T P E
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKIL--PEP--------TEGFAADDEPTTPAELVGKF 64
Query: 107 SGQSVAHPVYAHPTDCQKFYVCLNGVTPR-EQG--------CQVGEVYNEESQKCDAPEN 157
G V+ V P+ +F LN E ++ E +
Sbjct: 65 LGY-VSSLV--EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 158 VPGCENWFADDPAAAPQAAKKPGKKIRRRRNAAFKCPQKNGQYEDPVQCDKYYECFDGQA 217
+ +N+ A AK+P K + +A F+ + G + F GQ
Sbjct: 122 L--IKNYI-----TARIMAKRPFDK--KSNSALFRAVGE-GNA-------QLVAIFGGQG 164
Query: 218 TEKLCPDGLVFDPLNRKINKCDQPF 242
F+ L R + +
Sbjct: 165 NTDDY-----FEEL-RDLYQTYHVL 183
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 27.0 bits (59), Expect = 6.2
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 25 GSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIIC 60
G+ C GY D + C C E C
Sbjct: 22 GAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGC 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.455
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,075,259
Number of extensions: 238537
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 36
Length of query: 255
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 164
Effective length of database: 4,160,982
Effective search space: 682401048
Effective search space used: 682401048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)