RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2017
         (255 letters)



>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
           tridentatus) [TaxId: 6853]}
          Length = 73

 Score = 54.6 bits (131), Expect = 7e-11
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 187 RNAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVEC 246
           R   +     +G   +   C  +Y C    A  + CP GL ++     +  CD P    C
Sbjct: 5   RCGRYSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNA---YLKVCDWPSKAGC 61

Query: 247 GDR 249
              
Sbjct: 62  TSV 64



 Score = 47.3 bits (112), Expect = 4e-08
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 95  GFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDA 154
            F C +       G         +   C  FY C   +  R + C  G  YN   + CD 
Sbjct: 3   AFRCGRYSPCLDDG------PNVNLYSCCSFYNCHKCL-ARLENCPKGLHYNAYLKVCDW 55

Query: 155 PENVPGCEN 163
           P    GC +
Sbjct: 56  PSKA-GCTS 63



 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 25 GSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
          G Y     +G   +     C  FYNC +  +    CP GLH++ Y   C WP  AG
Sbjct: 7  GRYSPCLDDGPNVNLYS--CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAG 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.455 

Gapped
Lambda     K      H
   0.267   0.0666    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,052,778
Number of extensions: 52158
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 25
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)