BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2024
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1
Length = 450
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 113/187 (60%), Gaps = 6/187 (3%)
Query: 34 VLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSK 93
++H +F ++ + L++ ++ +T+D HD S Y G +G A+ Y Y+ T D
Sbjct: 69 IIH-NFIRRIQTKIKDLLQQMEEGLKTADP---HDCSAYTGWTGIALLYLQLYRVTCDQT 124
Query: 94 YLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPH 153
YL ++ ++R+L+NL RR +FL GDAGP+AV A+IY L + + V KL L
Sbjct: 125 YLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRS 184
Query: 154 VVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLS--ARK 211
VV SD+PDE+LYGRAGYLY+LL++N I + S I +VV++I+ SG+ LS RK
Sbjct: 185 VVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSREERK 244
Query: 212 KSRVPLI 218
R PL+
Sbjct: 245 TERCPLL 251
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 69 YSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLK------NLKNRRFSFLNGDAG 122
Y + GT+G + Y+ T D KYL +A K E L + +R +S G AG
Sbjct: 364 YGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEGMAG 423
Query: 123 PI 124
I
Sbjct: 424 AI 425
>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1
Length = 450
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 115/189 (60%), Gaps = 7/189 (3%)
Query: 32 KIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHD 91
KIV P+F ++ + L++ ++ +T+D HD S Y G +G A+ Y Y+ T D
Sbjct: 68 KIV--PNFIKRIQTKIKDLLQQMEEGLKTADP---HDCSAYTGWTGIALLYLQLYRVTGD 122
Query: 92 SKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALA 151
YL ++ ++R+L+NL RR +FL GDAGP+AV A+IY L + + + + KL +
Sbjct: 123 QTYLLRSLDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMH 182
Query: 152 PHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLS--A 209
+V S++PDE+LYGRAGYLY+LL++N I + + I +VV +I+ SG++LS
Sbjct: 183 RTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREE 242
Query: 210 RKKSRVPLI 218
RK R PL+
Sbjct: 243 RKSERCPLL 251
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 69 YSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLK------NLKNRRFSFLNGDAG 122
Y + GTSG + Y+ T D KYL +A K E L + +R +S G AG
Sbjct: 364 YGICHGTSGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEGMAG 423
Query: 123 PI 124
+
Sbjct: 424 AV 425
>sp|Q90ZL2|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1
Length = 405
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 109/196 (55%), Gaps = 7/196 (3%)
Query: 17 GEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTS 76
G G LF ++ L F T + + ++ L+ +++ + +D D + Y G +
Sbjct: 16 GLGCAQDLFDMQGN----LTQHFATSISSKISELLAILENGLKNADP---RDCTGYTGWA 68
Query: 77 GQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGK 136
G A+ Y + D +L +A + RSL++L R +FL GDAGP+A++A++Y L K
Sbjct: 69 GIALLYLHLHSVFGDPTFLQRALDYVNRSLRSLTQRWVTFLCGDAGPLAIAAVVYHRLQK 128
Query: 137 QEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQV 196
++ + + +L L P VV + +PDE+LYGR GYLYSL+FVN+ + I I Q+
Sbjct: 129 HQESDECLNRLLQLQPSVVQGKGRLPDELLYGRTGYLYSLIFVNQQFQQEKIPFQYIQQI 188
Query: 197 VDSILRSGQNLSARKK 212
D+IL SGQ LS R K
Sbjct: 189 CDAILESGQILSQRNK 204
>sp|O43813|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1
Length = 399
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 106/187 (56%), Gaps = 11/187 (5%)
Query: 35 LHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKY 94
L P F ++ + L++ ++ +++D D + Y G +G A+ Y Y D Y
Sbjct: 28 LTPEFSQRLTNKIRELLQQMERGLKSADP---RDGTGYTGWAGIAVLYLHLYDVFGDPAY 84
Query: 95 LDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHV 154
L A +++SL L R +FL GDAGP+AV+A++Y + +++ E + +L H+
Sbjct: 85 LQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLI----HL 140
Query: 155 VDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKK-- 212
+ P+E+LYGR GY+Y+LLFVNK+ I S I Q+ ++IL SG+NL ARK+
Sbjct: 141 NKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENL-ARKRNF 199
Query: 213 -SRVPLI 218
++ PL+
Sbjct: 200 TAKSPLM 206
>sp|O89112|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1
Length = 399
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 35 LHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKY 94
L P F ++ + L++ ++ +++D D + Y G +G A+ Y + D Y
Sbjct: 28 LTPEFSHRLTNKIRELLQQMERGLKSADP---RDGTGYTGWAGIAVLYLHLHNVFGDPAY 84
Query: 95 LDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHV 154
L A +++SL L R +FL GDAGP+AV+A++Y + +++ E + +L H+
Sbjct: 85 LQMAHSYVKQSLNCLSRRSITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLI----HL 140
Query: 155 VDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKK-- 212
+ +P+E+LYGR GY+++LLFVNK+ I S I Q+ ++IL SG+NLS ++
Sbjct: 141 NKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLA 200
Query: 213 SRVPLI 218
++ PL+
Sbjct: 201 AKSPLM 206
>sp|Q9QX69|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2
Length = 399
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 35 LHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKY 94
L P F ++ + L++ ++ +++D D + Y G +G A+ Y + D Y
Sbjct: 28 LTPEFSHRLTNKIRELLQQMERGLKSADP---QDGTGYTGWAGIAVLYLHLHNVFGDPAY 84
Query: 95 LDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHV 154
L A ++ SL L R +FL GDAGP+AV+A++Y + ++ E + +L H+
Sbjct: 85 LQMAHSYVKHSLNCLSRRSITFLCGDAGPLAVAAVLYHKMNSGKQAEDCITRLI----HL 140
Query: 155 VDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKK-- 212
+ +P+E+LYGR GY+++LLFVNK+ I S I Q+ ++IL SG+ LS ++
Sbjct: 141 NKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQSHIQQICETILTSGEKLSRKRNFT 200
Query: 213 SRVPLI 218
++ PL+
Sbjct: 201 TKSPLM 206
>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2
Length = 420
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 17/163 (10%)
Query: 70 SVYVGTSGQAMFYYIYYQ----RTHDSKYLDKAQKLIERSLKNLK------NRRFSFLNG 119
+Y G +G A Y Q T +YL A++LI+ + + + R +FL G
Sbjct: 64 GLYGGVAGVAYMLYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDADTRAAFLLG 123
Query: 120 DAGPIAVSALIYEALGKQEKLESSVQKLKAL----APHVVDLRSDIPDEILYGRAGYLYS 175
AG AV+ L+Y ALG+ + ++ + K +AL AP V DE+ GRAGYL +
Sbjct: 124 GAGVYAVATLVYHALGRSDYVQP-LGKFRALCAVCAP--VSFLECGSDELFVGRAGYLCA 180
Query: 176 LLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLI 218
L + + + + + I + +IL SG+ + +K+ PL+
Sbjct: 181 ALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKPFPLM 223
>sp|Q8CD19|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2
Length = 420
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 19/164 (11%)
Query: 70 SVYVGTSGQA-MFYYIYYQRTHDS---KYLDKAQKLIERSLKNLK------NRRFSFLNG 119
+Y G +G A M Y++ + +YL A++LI+ L+ + + R +FL G
Sbjct: 64 GLYSGVAGVAYMLYHVSQSPLFAAARERYLRFAKRLIDACLRAEEWGETDADTRAAFLLG 123
Query: 120 DAGPIAVSALIYEALGKQEKLESSVQKLKAL----AP-HVVDLRSDIPDEILYGRAGYLY 174
AG AV+ L+Y ALG+ + ++ + K +AL AP +D SD E+ GRAGYL
Sbjct: 124 GAGVYAVATLVYHALGRPDYVQP-LGKFRALCAVCAPVSFLDCGSD---ELFVGRAGYLC 179
Query: 175 SLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLI 218
+ L + + + + + I + +IL SG+ + +K+ PL+
Sbjct: 180 AALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKKRKPFPLM 223
>sp|Q9Y0Y7|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061
PE=1 SV=1
Length = 419
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 66 DHDYSVYVGTSGQAMFYY----------IYYQRTHDSKYLDKAQKLIERSLKNLKNRRFS 115
D+ +YVG +G A ++ +Y H + ++ A K+ K R+S
Sbjct: 51 DNRGDLYVGNAGIAFMFWKLNSCEQTRDLYPALDHAASFIRNA-KVNANRYKKRSAERYS 109
Query: 116 FLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSD--IPDEILYGRAGYL 173
FL G+AG AVSA I +AL + E+L + K+ P + DE+L GRAGYL
Sbjct: 110 FLCGNAGIYAVSAAISQALKETEELSDDLANFKSGIPCSKEFMHTKYGCDEVLVGRAGYL 169
Query: 174 YSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLI 218
++N + I + + I+ SG+ S + S PL+
Sbjct: 170 SGCYWLNDVLPEKKITDDDLVSICQLIVTSGREYSKQNNSPCPLM 214
>sp|Q29HZ1|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura
pseudoobscura GN=GA15215 PE=3 SV=1
Length = 420
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 71 VYVGTSGQAMFYY----------IYYQR-THDSKYLDKAQKLIERSLKNLKNRRFSFLNG 119
+YVG +G A ++ +Y H S ++ A+ ER K R+SFL G
Sbjct: 56 LYVGNAGIAFMFWKLASCEQTRDLYPPALQHASAFIRNAKANAER-FKKRSAERYSFLCG 114
Query: 120 DAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDL--RSDIPDEILYGRAGYLYSLL 177
+AG AVSA I +A+ E+L + + K+ P + + DE+L GRAGYL
Sbjct: 115 NAGIYAVSAAISQAVKDTEELSNDLANFKSGIPSSKEFIHTKNGCDEVLVGRAGYLSGCY 174
Query: 178 FVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLI 218
++N + I + + I+ SG+ S S +PL+
Sbjct: 175 WLNDVLPDKKITDDDLISICQLIVTSGREYSKMNNSPLPLM 215
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2
PE=2 SV=2
Length = 540
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 35 LHPSFETKVWATLTRLIEDID----SEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTH 90
L+P F + WA+ +DID SEY T+ RD ++ +G G+ + +Y+YY
Sbjct: 395 LYPKFASP-WASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGG 453
Query: 91 DSKYLDKAQKLIERSLKNLKNRR 113
D L A +L R + K R
Sbjct: 454 DVLQLLAAVELFNRDWRYHKEER 476
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2
PE=1 SV=1
Length = 540
Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 35 LHPSFETKVWATLTRLIEDID----SEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTH 90
L+P F + WA+ +DID SEY T+ RD ++ +G G+ + +Y+YY
Sbjct: 395 LYPKFASP-WASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGG 453
Query: 91 DSKYLDKAQKLIERSLKNLKNRR 113
D L A +L R + K R
Sbjct: 454 DVLQLLAAVELFNRDWRYHKEER 476
>sp|Q038L9|SYP_LACC3 Proline--tRNA ligase OS=Lactobacillus casei (strain ATCC 334)
GN=proS PE=3 SV=1
Length = 575
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 24 LFTVENKE--KIVLHPSFETKVWATLTRLIEDIDSEY--------ETSDKFRDHDYSVYV 73
LF ++N++ K++L P+ E T T L+ + Y + DKFRD D Y
Sbjct: 93 LFKLKNRQDRKMILGPTHEE----TFTDLVRNELKSYKRMPLVLYQIQDKFRDEDRPRYG 148
Query: 74 GTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNR---RFSFLNGDAGPIA 125
G+ Y T + + LD + +E + N+ +R R+ + GD G +
Sbjct: 149 VLRGREFIMQDAYSFTSNDQDLDTIYRQMEHAYTNIFDRLGLRYRSIIGDGGAMG 203
>sp|C7G046|Y6969_DICDI von Willebrand factor A domain-containing protein DDB_G0286969
OS=Dictyostelium discoideum GN=DDB_G0286969 PE=4 SV=1
Length = 2079
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 72 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSAL-- 129
Y+ +G + + T +SK + + ++ ++ ++ N+K S + P + L
Sbjct: 495 YIANAGSGVAELVIENETIESKVMRQLKRALQPAMSNIKVDWGSLSSKSQAPRDLRTLFF 554
Query: 130 -----IYEALGKQEKLESSVQKLKALAP 152
IY LGK EK++ + KL A P
Sbjct: 555 GDRLTIYNILGKDEKIDGTTVKLIANGP 582
>sp|Q6MEP4|SYR_PARUW Arginine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25)
GN=argS PE=3 SV=1
Length = 584
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 20 EKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDS--EYETSDKFRDH--------DY 69
EK L + + K + F+ + L +I+ D Y+T+D + D
Sbjct: 281 EKKGLVKISDGAKCIFLEGFQNREGENLPLMIQKSDGGYNYDTTDMAAIYHRIYHEKGDR 340
Query: 70 SVYVGTSGQAMFYYIYYQRTHDSKYLDKAQ 99
+Y+ +GQA + + ++ +KYLD Q
Sbjct: 341 LIYITDAGQATHFQMIFKAAEKAKYLDTTQ 370
>sp|P11283|POL_MMTVC Gag-Pro-Pol polyprotein OS=Mouse mammary tumor virus (strain C3H)
GN=gag-pro-pol PE=1 SV=2
Length = 1755
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 33 IVLHPSFETKVWATLTRLIEDIDSE--YETSDKFRDHDYSVYVGT--SGQAMFYYIYYQR 88
++ HPS + V LT +I+ ++ +++K + +D Y+GT G A+ Y R
Sbjct: 1048 LLAHPS-RSIVDEILTSMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDAVSYQKLQIR 1106
Query: 89 THDSKYLDKAQKLIE-----RSLKNLKNRR----FSFLNGDAGPIAVSALIYEA 133
T + L+ QKL+ R L F LNGD+ PI++ L EA
Sbjct: 1107 TDKLRTLNDFQKLLGNINWIRPFLKLTTGELKPLFEILNGDSNPISIRKLTPEA 1160
>sp|Q54U89|GRLL_DICDI Metabotropic glutamate receptor-like protein J OS=Dictyostelium
discoideum GN=grlL PE=2 SV=1
Length = 708
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 94 YLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALA 151
YLD L++ LKN S + G A P + L YE + +Q KL + + L A
Sbjct: 296 YLDYYSFLVDPLLKNQTEDLISTIKGGAKPYITNGLTYEKILEQTKLSTGITDLGYYA 353
>sp|Q6QB00|HELT_DANRE Hairy and enhancer of split-related protein helt OS=Danio rerio
GN=helt PE=2 SV=1
Length = 270
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 72 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIY 131
Y+ + + +FY + + D K + K+IE+ ++ NR + L G P+A++
Sbjct: 37 YIICNYRLVFYEMMASKMKDRKKTPVSHKVIEKRRRDRINRCLNEL-GKTVPMALAKQNS 95
Query: 132 EALGKQEKLESSVQKLKALAPHVVDL-RSDIPDEILYGRAGYLY 174
L K E LE +VQ L+AL H D R E+L A Y +
Sbjct: 96 GKLEKAEILEMTVQYLRAL--HSADFPRGREKGELLTEFANYFH 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,601,229
Number of Sequences: 539616
Number of extensions: 4755000
Number of successful extensions: 14044
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 14009
Number of HSP's gapped (non-prelim): 41
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)