Query psy2024
Match_columns 352
No_of_seqs 145 out of 236
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 22:15:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2787|consensus 100.0 1.6E-48 3.6E-53 375.3 19.0 226 5-242 1-232 (403)
2 cd04794 euk_LANCL eukaryotic L 99.8 1.4E-18 3E-23 169.6 15.1 170 72-242 1-175 (343)
3 PF05147 LANC_like: Lanthionin 99.4 9.1E-14 2E-18 133.4 0.9 172 66-241 2-176 (355)
4 cd04434 LanC_like LanC-like pr 99.2 6.8E-10 1.5E-14 105.3 14.6 166 72-242 1-169 (343)
5 cd04434 LanC_like LanC-like pr 98.9 4.2E-08 9.2E-13 93.1 15.9 131 67-198 44-189 (343)
6 cd04792 LanM-like LanM-like pr 98.8 6.3E-08 1.4E-12 105.0 14.9 166 66-243 484-654 (825)
7 cd04792 LanM-like LanM-like pr 98.7 2.6E-07 5.6E-12 100.3 16.3 122 67-188 535-664 (825)
8 cd04794 euk_LANCL eukaryotic L 98.6 3.8E-07 8.2E-12 89.4 13.4 136 67-203 46-200 (343)
9 cd04791 LanC_SerThrkinase Lant 98.6 2.1E-06 4.6E-11 82.1 15.8 132 67-204 133-277 (321)
10 cd04791 LanC_SerThrkinase Lant 98.4 7.8E-06 1.7E-10 78.2 15.5 135 67-203 77-232 (321)
11 cd04793 LanC LanC is the cycla 98.4 1.5E-06 3.2E-11 86.2 9.5 109 72-180 1-118 (382)
12 cd04793 LanC LanC is the cycla 98.4 8.5E-06 1.8E-10 80.8 14.4 116 68-183 44-188 (382)
13 COG4403 LcnDR2 Lantibiotic mod 98.3 8.3E-06 1.8E-10 88.7 15.0 157 41-209 666-831 (963)
14 PF05147 LANC_like: Lanthionin 98.2 2.7E-06 5.9E-11 81.8 7.1 159 41-204 28-204 (355)
15 COG4403 LcnDR2 Lantibiotic mod 97.3 0.0032 6.8E-08 69.2 12.9 117 68-187 642-762 (963)
16 KOG2787|consensus 95.2 0.09 1.9E-06 52.6 8.4 107 73-179 280-390 (403)
17 COG1331 Highly conserved prote 85.1 48 0.0011 36.5 16.8 132 66-202 403-565 (667)
18 COG3533 Uncharacterized protei 68.4 45 0.00097 35.8 10.4 114 69-183 174-306 (589)
19 COG4225 Predicted unsaturated 63.8 77 0.0017 32.4 10.6 54 162-215 260-319 (357)
20 PF07944 DUF1680: Putative gly 56.9 37 0.00079 35.8 7.5 73 69-141 171-257 (520)
21 cd00330 phosphagen_kinases Pho 51.1 13 0.00027 35.8 2.7 59 219-286 140-213 (236)
22 PF12569 NARP1: NMDA receptor- 48.6 1.2E+02 0.0025 32.4 9.7 60 73-140 188-247 (517)
23 cd07930 bacterial_phosphagen_k 38.8 21 0.00045 34.1 2.1 60 219-287 133-209 (232)
24 PF09986 DUF2225: Uncharacteri 37.6 1.9E+02 0.0041 27.1 8.3 71 78-150 117-194 (214)
25 cd00716 creatine_kinase_like P 36.5 25 0.00054 35.9 2.3 55 223-286 264-327 (357)
26 cd07932 arginine_kinase_like P 32.5 54 0.0012 33.4 4.0 59 219-286 253-326 (350)
27 PRK11097 endo-1,4-D-glucanase; 29.9 84 0.0018 32.3 4.9 54 69-122 112-169 (376)
28 cd07931 eukaryotic_phosphagen_ 29.6 39 0.00085 34.2 2.4 59 219-286 242-315 (338)
29 PF03663 Glyco_hydro_76: Glyco 22.4 3.7E+02 0.008 27.0 7.9 106 42-151 113-253 (370)
30 PRK01059 ATP:guanido phosphotr 22.4 57 0.0012 33.1 2.1 59 218-285 152-227 (346)
31 PF10849 DUF2654: Protein of u 21.5 1.3E+02 0.0027 24.0 3.4 45 142-196 14-58 (70)
32 PF07944 DUF1680: Putative gly 20.5 8.8E+02 0.019 25.5 10.6 120 81-202 133-268 (520)
No 1
>KOG2787|consensus
Probab=100.00 E-value=1.6e-48 Score=375.32 Aligned_cols=226 Identities=29% Similarity=0.431 Sum_probs=192.8
Q ss_pred CCCCCCCCCCCCCCCCccc-cc---c-ccccccccccchHHHHHHHHHHHHHHHhhcccccCCCCCCCCCceeechHHHH
Q psy2024 5 HSSRHHQNKYKYGEGEKSK-LF---T-VENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQA 79 (352)
Q Consensus 5 M~~RyF~Npf~dy~~~~~~-~~---~-~~~~~~~~l~~~f~~~L~~ai~~lL~~i~~~~~~~d~~~~~dgglYtG~aGIA 79 (352)
|..|+|+|||||...+... +- + .+++ +-.++..++..++++.+.+..-+ .. +..+.|+++|||++|||
T Consensus 1 me~r~~~np~pd~a~G~~e~~~~~~~e~~~~----~~~e~~~r~~~~ikd~~~~~~~~--~S-~d~~~d~tlYtG~~GiA 73 (403)
T KOG2787|consen 1 MERRAFVNPFPDDASGENETVGSEPDEPTGK----LFTEFIKRLATKIKDLVVEMTWG--KS-GDEVRDGTLYTGWLGIA 73 (403)
T ss_pred CcccccCCCCcccccCCCccccCCCcccccc----cHHHHHHHHHHHHHHHHHHHHhc--cc-CCCCcCCceeechHHHH
Confidence 6789999999998654322 11 1 1122 22244555555666666554333 21 22378999999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHH-hhccCCCccccCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhhchhccCCC
Q psy2024 80 MFYYIYYQRTHDSKYLDKAQKLIERSL-KNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLR 158 (352)
Q Consensus 80 YmflrL~~~~~d~~yL~~A~e~I~~~l-~~i~~r~iSFL~G~AG~lAV~Aviy~~lgd~~~~~~~l~~L~~l~~~~l~~~ 158 (352)
|+|+++++++.|..+|..|.++|+.|+ ++.+.+++|||||+|||+||+|++++.+|++++.+.|+.+|+++.. ..
T Consensus 74 fl~~kly~vTrd~~~L~~~~e~Vk~~~~~~~s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~----~~ 149 (403)
T KOG2787|consen 74 FLYLKLYEVTRDLYDLLLCLEIVKACLVASRSSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRL----CS 149 (403)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhccc----CC
Confidence 999999999999999999999999998 6677789999999999999999999999999999999999999765 24
Q ss_pred CCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHcChhhhhhcCCCCCeeccccccccCCCCCCCCCcch
Q psy2024 159 SDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISCGNNTNQPTKSHL 238 (352)
Q Consensus 159 ~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~SGr~~ak~~~~~~PLMY~Wh~~~c~~~~~~g~~~~l 238 (352)
++.|||+||||||||||+||||+++|+++|+++.|++||+.|+.|||+++++++++|||||+||+.++-+- -||+++++
T Consensus 150 ~dlp~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GA-AhGLagI~ 228 (403)
T KOG2787|consen 150 SDLPDELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGA-AHGLAGIL 228 (403)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhh-hhhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999888 99999999
Q ss_pred HHHH
Q psy2024 239 YIIL 242 (352)
Q Consensus 239 ~~i~ 242 (352)
+++|
T Consensus 229 ~vLm 232 (403)
T KOG2787|consen 229 YVLM 232 (403)
T ss_pred HHHh
Confidence 9999
No 2
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=99.79 E-value=1.4e-18 Score=169.63 Aligned_cols=170 Identities=38% Similarity=0.606 Sum_probs=135.7
Q ss_pred eechHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHhhccC-CCccccCCChHHHHHHHHHHHHhCChHHHHHHHHH
Q psy2024 72 YVGTSGQAMFYYIYYQR----THDSKYLDKAQKLIERSLKNLKN-RRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQK 146 (352)
Q Consensus 72 YtG~aGIAYmflrL~~~----~~d~~yL~~A~e~I~~~l~~i~~-r~iSFL~G~AG~lAV~Aviy~~lgd~~~~~~~l~~ 146 (352)
|+|.+||||+|+++++. ++|+.|+++|.++++...+.+.. .+++|++|.+|++.+.+.+++..+|++..+..++.
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~~ 80 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSK 80 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHhhcccccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 89999999999999999 88999999999999987766543 57999999999999999999999998766655555
Q ss_pred HHhhchhccCCCCCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHcChhhhhhcCCCCCeecccccccc
Q psy2024 147 LKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISC 226 (352)
Q Consensus 147 L~~l~~~~l~~~~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~SGr~~ak~~~~~~PLMY~Wh~~~c 226 (352)
+.+.....+......++|++||+||++++|+++++.++.+....+.+.++++.|++.++..........|.||.|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
T cd04794 81 FLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEY 160 (343)
T ss_pred HHHHHHHHhhcccCCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCcee
Confidence 54443322211133568999999999999999999987666678899999999999988777655556789999986544
Q ss_pred CCCCCCCCCcchHHHH
Q psy2024 227 GNNTNQPTKSHLYIIL 242 (352)
Q Consensus 227 ~~~~~~g~~~~l~~i~ 242 (352)
.+.-||..+++..++
T Consensus 161 -~G~aHG~aGI~~~L~ 175 (343)
T cd04794 161 -LGAAHGLAGILYILL 175 (343)
T ss_pred -cchhhhHHHHHHHHH
Confidence 346788777776544
No 3
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.37 E-value=9.1e-14 Score=133.38 Aligned_cols=172 Identities=24% Similarity=0.317 Sum_probs=127.5
Q ss_pred CCCCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhccCC---CccccCCChHHHHHHHHHHHHhCChHHHHH
Q psy2024 66 DHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNR---RFSFLNGDAGPIAVSALIYEALGKQEKLES 142 (352)
Q Consensus 66 ~~dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~r---~iSFL~G~AG~lAV~Aviy~~lgd~~~~~~ 142 (352)
+.+.++|.|.+||+++|.++++..+|+.|.+.+.++++.....+... .+++.+|.+|++.+...+++..++....++
T Consensus 2 ~~~~sly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~ 81 (355)
T PF05147_consen 2 PLDYSLYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFSGLAGIAYALSYLSKRLGDEKYIEE 81 (355)
T ss_dssp CCGGSTTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTTSCHHHHHHHHHHCCCTCHHHHHHH
T ss_pred CCCCcCCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccCChHHHHHHHHHHHHhccchHHHHH
Confidence 45789999999999999999999999999999999999887766542 899999999999998888887777776667
Q ss_pred HHHHHHhhchhccCCCCCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHcChhhhhhcCCCCCeecccc
Q psy2024 143 SVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLM 222 (352)
Q Consensus 143 ~l~~L~~l~~~~l~~~~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~SGr~~ak~~~~~~PLMY~Wh 222 (352)
.++.+.+........+...+.++++|.||++..++.+.+..+...+. +.+.++++.|+++..... ....|.|++|.
T Consensus 82 ~l~~~~~~i~~~~~~~~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l-~~i~~~~~~l~~~~~~~~---~~~~~~~~~~~ 157 (355)
T PF05147_consen 82 LLKRILNIIENSISNDSNNDYDLLSGLAGIGLYLLSLYEKTKDPKYL-DIIEKILEKLLESIINDD---PSENQIGSEWK 157 (355)
T ss_dssp HHHHHHHCHHHHHHCT--GGCSTTTSHHHHHHHHCCHHHHHCCHHS--HHHHHHHHHCCCHHCCCH---TCCGSSSHHCH
T ss_pred HHHHHHHHHHHhhhhcccccchhhcccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHhhcc---cccCCCccccC
Confidence 77777765543322221112899999999999999999877554443 788888898888777666 34688999997
Q ss_pred ccccCCCCCCCCCcchHHH
Q psy2024 223 LISCGNNTNQPTKSHLYII 241 (352)
Q Consensus 223 ~~~c~~~~~~g~~~~l~~i 241 (352)
......++-||..+.+..+
T Consensus 158 ~~~~~~G~aHG~~Gi~~~L 176 (355)
T PF05147_consen 158 EGFINLGFAHGIAGILYAL 176 (355)
T ss_dssp TTBEE-STTTSHHHHHHHH
T ss_pred CCCccCCccccHHHHHHHH
Confidence 2233334555554444433
No 4
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.16 E-value=6.8e-10 Score=105.31 Aligned_cols=166 Identities=28% Similarity=0.360 Sum_probs=114.4
Q ss_pred eechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhccC---CCccccCCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy2024 72 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN---RRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLK 148 (352)
Q Consensus 72 YtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~---r~iSFL~G~AG~lAV~Aviy~~lgd~~~~~~~l~~L~ 148 (352)
|.|.+||+|+|.++++..+++.|.+.+...++.....+.. ..+++..|.+|+..+...+++..++++..+...+.+.
T Consensus 1 y~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~ 80 (343)
T cd04434 1 YHGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLL 80 (343)
T ss_pred CCChHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7899999999999999999988888888888866655543 3689999999999998999998888775544333333
Q ss_pred hhchhccCCCCCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHcChhhhhhcCCCCCeeccccccccCC
Q psy2024 149 ALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISCGN 228 (352)
Q Consensus 149 ~l~~~~l~~~~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~SGr~~ak~~~~~~PLMY~Wh~~~c~~ 228 (352)
...............++++|.||++++|+.+.+..+.+. ..+.+.++++.+++..+...... ..| .+ +....+..
T Consensus 81 ~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~--~~~-~~-~~~~~~~~ 155 (343)
T cd04434 81 LLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEEI-FLELIRKILDYLLELGKNGDGKI--RWP-MY-FPEGRVNL 155 (343)
T ss_pred HhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCcC-HHHHHHHHHHHHHHhhhhccCCC--cee-ee-ccCCcccc
Confidence 333222111133467899999999999999998885433 46788889999988654322110 000 11 11223444
Q ss_pred CCCCCCCcchHHHH
Q psy2024 229 NTNQPTKSHLYIIL 242 (352)
Q Consensus 229 ~~~~g~~~~l~~i~ 242 (352)
+.-||..+.+..++
T Consensus 156 g~~HG~~Gi~~~l~ 169 (343)
T cd04434 156 GLAHGLAGILLALL 169 (343)
T ss_pred chhhhhHHHHHHHH
Confidence 46677777666555
No 5
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=98.91 E-value=4.2e-08 Score=93.06 Aligned_cols=131 Identities=21% Similarity=0.289 Sum_probs=92.2
Q ss_pred CCCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhc----cCCCccccCCChHHHHHHHHHHHHhCChHHH--
Q psy2024 67 HDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNL----KNRRFSFLNGDAGPIAVSALIYEALGKQEKL-- 140 (352)
Q Consensus 67 ~dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i----~~r~iSFL~G~AG~lAV~Aviy~~lgd~~~~-- 140 (352)
.+.|+|+|.+|++|++.++++.++|+.+++.+.+++....+.. .....+|+.|.+|++.+...+++..+++...
T Consensus 44 ~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~ 123 (343)
T cd04434 44 TDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEEIFLEL 123 (343)
T ss_pred CCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCcCHHHH
Confidence 3579999999999999999999999999999999988766654 2357899999999999888888877664422
Q ss_pred -HHHHHHHHhhchhcc---CCC-----CCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHH
Q psy2024 141 -ESSVQKLKALAPHVV---DLR-----SDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVD 198 (352)
Q Consensus 141 -~~~l~~L~~l~~~~l---~~~-----~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~ 198 (352)
.+.++.+.+...... .|. ....--+.||-+|++++|+.+.+.+.+ ....+.++++..
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~-~~~~~~~~~~~~ 189 (343)
T cd04434 124 IRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVD-KSLEALIKALLK 189 (343)
T ss_pred HHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCC-hhHHHHHHHHHH
Confidence 345555544432210 010 111224669999999999999998733 222334444333
No 6
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=98.81 E-value=6.3e-08 Score=105.03 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=113.8
Q ss_pred CCCCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhccC-----CCccccCCChHHHHHHHHHHHHhCChHHH
Q psy2024 66 DHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN-----RRFSFLNGDAGPIAVSALIYEALGKQEKL 140 (352)
Q Consensus 66 ~~dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~-----r~iSFL~G~AG~lAV~Aviy~~lgd~~~~ 140 (352)
+.+.++|.|.+|||++|.++++.++|+.|.+.|.++++.....+.. ...++..|.+|++.+.+.+++..+++...
T Consensus 484 ~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~aGi~~~L~~l~~~~~~~~~~ 563 (825)
T cd04792 484 PLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGGILYALTHLGKLLKDDRLL 563 (825)
T ss_pred cCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEechhHHHHHHHHHHHHcCCHHHH
Confidence 4578999999999999999999999999999999988876655542 36789999999988888888888886633
Q ss_pred HHHHHHHHhhchhccCCCCCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHcChhhhhhcCCCCCeecc
Q psy2024 141 ESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINF 220 (352)
Q Consensus 141 ~~~l~~L~~l~~~~l~~~~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~SGr~~ak~~~~~~PLMY~ 220 (352)
+.+.+..+...... .......+++|.||++++|+.+.+..+.+.+ .+.+.++.+.+++.. ... ..-+|
T Consensus 564 -~~a~~~~~~l~~~~--~~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~-l~~a~~~~~~l~~~~----~~~---~~~~~- 631 (825)
T cd04792 564 -NLAKEILDLIDELI--EKDEKLDFISGAAGLILVLLSLYELFLSERF-LDLALKCGDHLLENA----SNE---DGGIG- 631 (825)
T ss_pred -HHHHHHHHHHHHhh--ccccCCCEeeecHHHHHHHHHHHhccCChHH-HHHHHHHHHHHHHhh----hhc---cCCcc-
Confidence 33333333222111 1223456889999999999999988865433 345566666666532 111 11123
Q ss_pred ccccccCCCCCCCCCcchHHHHH
Q psy2024 221 LMLISCGNNTNQPTKSHLYIILF 243 (352)
Q Consensus 221 Wh~~~c~~~~~~g~~~~l~~i~~ 243 (352)
.+...+..++-||+.+.+..++.
T Consensus 632 ~~~~~~~~G~aHG~sGi~~aL~~ 654 (825)
T cd04792 632 PAEQPNLTGFAHGASGIAWALLR 654 (825)
T ss_pred cccccccccccccHHHHHHHHHH
Confidence 22334455678888887776653
No 7
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=98.73 E-value=2.6e-07 Score=100.30 Aligned_cols=122 Identities=17% Similarity=0.188 Sum_probs=89.7
Q ss_pred CCCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcc-CCCccccCCChHHHHHHHHHHHHhCChHHH---HH
Q psy2024 67 HDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLK-NRRFSFLNGDAGPIAVSALIYEALGKQEKL---ES 142 (352)
Q Consensus 67 ~dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~-~r~iSFL~G~AG~lAV~Aviy~~lgd~~~~---~~ 142 (352)
.+.|+|+|.+|++|+++++++.++++.|++.|.++++.....+. ....+++.|.||++.+...+++..+++... .+
T Consensus 535 ~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~ 614 (825)
T cd04792 535 TGIGAFSGLGGILYALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGAAGLILVLLSLYELFLSERFLDLALK 614 (825)
T ss_pred cCceeEechhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeecHHHHHHHHHHHhccCChHHHHHHHH
Confidence 46899999999999999999999999999999998886554433 357899999999998888899888876543 34
Q ss_pred HHHHHHhhchhccCC----CCCCCCccccchHHHHHHHHHHHhhcCCCCC
Q psy2024 143 SVQKLKALAPHVVDL----RSDIPDEILYGRAGYLYSLLFVNKHIKSVNI 188 (352)
Q Consensus 143 ~l~~L~~l~~~~l~~----~~~~pDELLYGRAGYLyALL~Lrk~~~~e~i 188 (352)
+++++.+.....-.+ .....--+.||.||++++|+.+.+..+++.+
T Consensus 615 ~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~ 664 (825)
T cd04792 615 CGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRY 664 (825)
T ss_pred HHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHH
Confidence 555554432211000 0011234569999999999999998866443
No 8
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=98.65 E-value=3.8e-07 Score=89.39 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=92.0
Q ss_pred CCCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhc----cCCCccccCCChHHHHHHHHHHHHhCCh----H
Q psy2024 67 HDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNL----KNRRFSFLNGDAGPIAVSALIYEALGKQ----E 138 (352)
Q Consensus 67 ~dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i----~~r~iSFL~G~AG~lAV~Aviy~~lgd~----~ 138 (352)
...++++|.+|+++++.++++.++|+++++.+.+.++...... +....+++.|.||.+.+...+++..+++ +
T Consensus 46 ~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~ 125 (343)
T cd04794 46 RRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFKKIPSS 125 (343)
T ss_pred cCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhcccCCchhhhccHHHHHHHHHHHHHHcCcCCCCHH
Confidence 4579999999999999999999999888888888777555432 2245789999999999988999988743 2
Q ss_pred HHHHHHHHHHhhchhcc-----CC--CCCCCCc----cccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHc
Q psy2024 139 KLESSVQKLKALAPHVV-----DL--RSDIPDE----ILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRS 203 (352)
Q Consensus 139 ~~~~~l~~L~~l~~~~l-----~~--~~~~pDE----LLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~S 203 (352)
..+++++.+.+...... .| .....++ +=||.||++++|+.+.+..+++.+ .+.|.+.++.+++.
T Consensus 126 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~-~~~i~~~i~~~~~~ 200 (343)
T cd04794 126 LIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSL-APLIKRSLDYLLSL 200 (343)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhhhhcCCccH-HHHHHHHHHHHHHh
Confidence 33444544444321110 01 0001112 229999999999999887754433 44566666555543
No 9
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.57 E-value=2.1e-06 Score=82.14 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=95.3
Q ss_pred CCCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhccC-------------CCccccCCChHHHHHHHHHHHH
Q psy2024 67 HDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN-------------RRFSFLNGDAGPIAVSALIYEA 133 (352)
Q Consensus 67 ~dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~-------------r~iSFL~G~AG~lAV~Aviy~~ 133 (352)
...|+..|.+||+++++++++.++|+.|++.|.+.++...+.... ..+.+..|.+|+..+...+++.
T Consensus 133 ~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~ 212 (321)
T cd04791 133 VDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAI 212 (321)
T ss_pred CCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHh
Confidence 457999999999999999999999999999999999866544321 1355888999998887888888
Q ss_pred hCChHHHHHHHHHHHhhchhccCCCCCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHcC
Q psy2024 134 LGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSG 204 (352)
Q Consensus 134 lgd~~~~~~~l~~L~~l~~~~l~~~~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~SG 204 (352)
++|+... +.+++..+...... + ...=+.||.+|.+++++.+.+.++++. -.+.+..+.+.|+...
T Consensus 213 ~~d~~~~-~~a~~~~~~~~~~~-~---~~~~lchG~~G~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 277 (321)
T cd04791 213 TGDKRWR-DEADGIAHAALSSC-Y---ANPGLFSGTAGLGAHLNDLAAEGDNAL-YKAAAERLALYLIATA 277 (321)
T ss_pred cCCHHHH-HHHHHHHHHHhhhh-c---cCccccCCcHhHHHHHHhhcccccChH-HHHHHHHHHHHhcccc
Confidence 8886533 33444333322111 1 123377999999999999998876544 3556667777777543
No 10
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.42 E-value=7.8e-06 Score=78.24 Aligned_cols=135 Identities=21% Similarity=0.185 Sum_probs=92.2
Q ss_pred CCCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhcc------------CCCccccCCChHHHHHHHHHHHHh
Q psy2024 67 HDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLK------------NRRFSFLNGDAGPIAVSALIYEAL 134 (352)
Q Consensus 67 ~dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~------------~r~iSFL~G~AG~lAV~Aviy~~l 134 (352)
.+.+++.|.+|++++++++++. +|+.|++.|.+..+...+... .....|..|.+|+..+.+.+++..
T Consensus 77 ~~~dl~~G~aG~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t 155 (321)
T cd04791 77 LNIDLASGLAGIGLALLYFART-GDPALLEAAAKIAELLAEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKAT 155 (321)
T ss_pred cCCccccchHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHH
Confidence 4679999999999999999999 999999999888876554321 123689999999988888999999
Q ss_pred CChHHHH---HHHHHHHhhchhcc-CCC-CCCCC----ccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHc
Q psy2024 135 GKQEKLE---SSVQKLKALAPHVV-DLR-SDIPD----EILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRS 203 (352)
Q Consensus 135 gd~~~~~---~~l~~L~~l~~~~l-~~~-~~~pD----ELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~S 203 (352)
+|+...+ +.++.+.+.....- .+. ....+ -+-||-+|.+++++.+.+.++++.+ .+.+.++.+.+...
T Consensus 156 ~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~-~~~a~~~~~~~~~~ 232 (321)
T cd04791 156 GDSRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRW-RDEADGIAHAALSS 232 (321)
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHhhh
Confidence 9977443 33333333321100 000 00011 2559999999999999998765444 23455555555443
No 11
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=98.37 E-value=1.5e-06 Score=86.22 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=73.4
Q ss_pred eechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhccC-C-CccccCCChHHHHHHHHHHH-HhCChH---HHHHHHH
Q psy2024 72 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN-R-RFSFLNGDAGPIAVSALIYE-ALGKQE---KLESSVQ 145 (352)
Q Consensus 72 YtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~-r-~iSFL~G~AG~lAV~Aviy~-~lgd~~---~~~~~l~ 145 (352)
|.|.+|||++|.+|++.++++.|.+.|.++++.....++. . .++...|.+|+..+...+++ ...+++ .+++.+.
T Consensus 1 y~G~~GIalf~~~l~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd04793 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLSLGYSSSLFSGAAGVAFALLILSDNGKRYQELLESLDELIK 80 (382)
T ss_pred CCcHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHccCcHhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988776654 2 57788899998655555554 222332 1223333
Q ss_pred HHHhhchhccC---CCCCCCCccccchHHHHHHHHHHH
Q psy2024 146 KLKALAPHVVD---LRSDIPDEILYGRAGYLYSLLFVN 180 (352)
Q Consensus 146 ~L~~l~~~~l~---~~~~~pDELLYGRAGYLyALL~Lr 180 (352)
.+.+......+ ......-++++|-||.++.|+.+.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~yD~i~G~aGi~~~Ll~~~ 118 (382)
T cd04793 81 AIVRRRLEDAKSGEPPTPTNYDVISGLSGIGRYLLLRH 118 (382)
T ss_pred HHHHHHHHHHhcCCCCCCCCCceeechHHHHHHHHhcc
Confidence 33221110000 012233469999999999998776
No 12
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=98.35 E-value=8.5e-06 Score=80.82 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=73.8
Q ss_pred CCceeechHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHhh----------ccCCCccccCCChHHHHHHHHHH-HHhC
Q psy2024 68 DYSVYVGTSGQAMFYYIYYQ-RTHDSKYLDKAQKLIERSLKN----------LKNRRFSFLNGDAGPIAVSALIY-EALG 135 (352)
Q Consensus 68 dgglYtG~aGIAYmflrL~~-~~~d~~yL~~A~e~I~~~l~~----------i~~r~iSFL~G~AG~lAV~Aviy-~~lg 135 (352)
+.|+|+|.+|++|++.++++ ...++++++.+.+++....+. .+....+|+.|.||++.+...++ +...
T Consensus 44 ~~s~f~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yD~i~G~aGi~~~Ll~~~~~~~~ 123 (382)
T cd04793 44 SSSLFSGAAGVAFALLILSDNGKRYQELLESLDELIKAIVRRRLEDAKSGEPPTPTNYDVISGLSGIGRYLLLRHEPDSE 123 (382)
T ss_pred CCcccccHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceeechHHHHHHHHhccCcchh
Confidence 57999999999999999998 345577777887777654332 22356899999999988766555 2111
Q ss_pred ChHHHHHHHHHHHhhchhc----c------C-C-CCCCC-Ccc----ccchHHHHHHHHHHHhhc
Q psy2024 136 KQEKLESSVQKLKALAPHV----V------D-L-RSDIP-DEI----LYGRAGYLYSLLFVNKHI 183 (352)
Q Consensus 136 d~~~~~~~l~~L~~l~~~~----l------~-~-~~~~p-DEL----LYGRAGYLyALL~Lrk~~ 183 (352)
....+.++++.|.+....- . . . ....| .+. =||.||++++|..+.+..
T Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~ 188 (382)
T cd04793 124 LLREILDYLVYLTEPLNQDITLYIWSENQPSETESKEFPEGHINLGLAHGIAGPLALLALAKERG 188 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccccCCCccccccchhcchHHHHHHHHHHHcC
Confidence 1123455666655542110 0 0 0 00111 222 299999999998887755
No 13
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=98.35 E-value=8.3e-06 Score=88.66 Aligned_cols=157 Identities=22% Similarity=0.286 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCCCCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhc--cCCCccccC
Q psy2024 41 TKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNL--KNRRFSFLN 118 (352)
Q Consensus 41 ~~L~~ai~~lL~~i~~~~~~~d~~~~~dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i--~~r~iSFL~ 118 (352)
..+++...+.++.+.+..... ..+-..|.|+|.+|+.|++++++.++.|....+.|.+.+. ++... ..+.++|+.
T Consensus 666 ~~Y~~ia~~~L~~~~~sv~~~--~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~-~le~~v~~~~~~d~i~ 742 (963)
T COG4403 666 DYYKEIAIKALQDSRKSVNNN--LNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIR-HLEILVQKSKDPDFIN 742 (963)
T ss_pred HHHHHHHHHHHHHHHHhhhhc--cCCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHH-HHHHHHhhccCcchhh
Confidence 345565556666555543321 1134589999999999999999999999888888888888 55433 236799999
Q ss_pred CChHHHHHHHHHHHHhCChHHHH---HHHHHHHhhchhccCCCCCCCCccc----cchHHHHHHHHHHHhhcCCCCChhh
Q psy2024 119 GDAGPIAVSALIYEALGKQEKLE---SSVQKLKALAPHVVDLRSDIPDEIL----YGRAGYLYSLLFVNKHIKSVNIEAS 191 (352)
Q Consensus 119 G~AG~lAV~Aviy~~lgd~~~~~---~~l~~L~~l~~~~l~~~~~~pDELL----YGRAGYLyALL~Lrk~~~~e~i~~~ 191 (352)
|.||++.+...+|+....++.++ .+.+.+.+ .++..++ .+ -+| ||-||++++|+.+.+..+++.
T Consensus 743 Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~---~~v~~d~-s~-~~l~gfshg~sgi~~tL~~ly~~T~e~~---- 813 (963)
T COG4403 743 GLAGVICVLVSIYKLTDEPKFLELAISLGRILME---KIVGNDS-SE-TVLLGFSHGASGIILTLLKLYEATGEES---- 813 (963)
T ss_pred ccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH---Hhhcccc-cc-ceecccccchHHHHHHHHHHHHhcCcHH----
Confidence 99999999999998865555333 23333332 2222222 12 344 999999999999999998743
Q ss_pred hHHHHHHHHHHcChhhhh
Q psy2024 192 LIHQVVDSILRSGQNLSA 209 (352)
Q Consensus 192 ~I~~V~~~II~SGr~~ak 209 (352)
..+++-+.+.-.-+.++.
T Consensus 814 l~~~i~e~~~~Er~~f~~ 831 (963)
T COG4403 814 LLKKIKELLSYERMKFSD 831 (963)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444455444455554
No 14
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=98.21 E-value=2.7e-06 Score=81.76 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCCCCceeechHHHHHHHHHHHhccCChHHH-HHHHHHHHHHHhhccC-CC--ccc
Q psy2024 41 TKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYL-DKAQKLIERSLKNLKN-RR--FSF 116 (352)
Q Consensus 41 ~~L~~ai~~lL~~i~~~~~~~d~~~~~dgglYtG~aGIAYmflrL~~~~~d~~yL-~~A~e~I~~~l~~i~~-r~--iSF 116 (352)
..+.+.++++++.+........ ..+.|+|+|.+|++|++..+++..++.... +....+.+...+.... .. .++
T Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~---~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~D~ 104 (355)
T PF05147_consen 28 PKYLDLAEKLLEKLINYIENNP---YDSIGLFSGLAGIAYALSYLSKRLGDEKYIEELLKRILNIIENSISNDSNNDYDL 104 (355)
T ss_dssp HHHHHHHHHHHHHHCCCHHCC-----S--STTTSCHHHHHHHHHHCCCTCHHHHHHHHHHHHHHCHHHHHHCT--GGCST
T ss_pred cHHHHHHHHHHHHHHHHHHhcc---CcCCcccCChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhcccccchh
Confidence 3466677777777766554321 227899999999999999999887754433 3333333322222222 22 899
Q ss_pred cCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhh-chhccCCC----CCC----CCc----cccchHHHHHHHHHHH-hh
Q psy2024 117 LNGDAGPIAVSALIYEALGKQEKLESSVQKLKAL-APHVVDLR----SDI----PDE----ILYGRAGYLYSLLFVN-KH 182 (352)
Q Consensus 117 L~G~AG~lAV~Aviy~~lgd~~~~~~~l~~L~~l-~~~~l~~~----~~~----pDE----LLYGRAGYLyALL~Lr-k~ 182 (352)
+.|.+|+..+...+++..+++... +.+.++.+. .......+ ..+ .+. +-||-||++++|..+. +.
T Consensus 105 l~G~aGi~~~ll~~~~~~~~~~~l-~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~ 183 (355)
T PF05147_consen 105 LSGLAGIGLYLLSLYEKTKDPKYL-DIIEKILEKLLESIINDDPSENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKG 183 (355)
T ss_dssp TTSHHHHHHHHCCHHHHHCCHHS--HHHHHHHHHCCCHHCCCHTCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT
T ss_pred hcccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHhhcccccCCCccccCCCCccCCccccHHHHHHHHHHhhhcc
Confidence 999999999888888888775533 233333322 22211100 000 111 2399999999999888 45
Q ss_pred cCCCCChhhhHHHHHHHHHHcC
Q psy2024 183 IKSVNIEASLIHQVVDSILRSG 204 (352)
Q Consensus 183 ~~~e~i~~~~I~~V~~~II~SG 204 (352)
+++ ....+.|.++++.+.+.-
T Consensus 184 ~~~-~~~~~~i~~~~~~~~~~~ 204 (355)
T PF05147_consen 184 TKD-PEYLKLIEQILNFLLKHF 204 (355)
T ss_dssp --H-HHHHHCHHHHHHHHHHC-
T ss_pred cCc-hhHHHHHHHHHHHHHHhc
Confidence 543 223556666666666544
No 15
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=97.28 E-value=0.0032 Score=69.22 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=84.7
Q ss_pred CCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhccC----CCccccCCChHHHHHHHHHHHHhCChHHHHHH
Q psy2024 68 DYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN----RRFSFLNGDAGPIAVSALIYEALGKQEKLESS 143 (352)
Q Consensus 68 dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~----r~iSFL~G~AG~lAV~Aviy~~lgd~~~~~~~ 143 (352)
..++|.|.+|||+.|.+|+++.+...|.+.|.+.++...++++. ..+.-..|.+|.+-+...++...+|.. +.+.
T Consensus 642 g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~~G~~g~~yal~~I~~~~~~~~-l~~~ 720 (963)
T COG4403 642 GNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFTGLSGYFYALWKIYSVTRDNY-LIQS 720 (963)
T ss_pred CchhhcCcchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhccCCcccccccccchhhhhhHHHHHhcccHH-HHHH
Confidence 56899999999999999999999899999999999877776653 245567899998776678888888844 3222
Q ss_pred HHHHHhhchhccCCCCCCCCccccchHHHHHHHHHHHhhcCCCC
Q psy2024 144 VQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVN 187 (352)
Q Consensus 144 l~~L~~l~~~~l~~~~~~pDELLYGRAGYLyALL~Lrk~~~~e~ 187 (352)
+.+.....+.++.. +. .-...-|-||.++.|+-+.+.+.+.+
T Consensus 721 ~~~~i~~le~~v~~-~~-~~d~i~Gl~g~i~~L~~iYk~~~epk 762 (963)
T COG4403 721 AENSIRHLEILVQK-SK-DPDFINGLAGVICVLVSIYKLTDEPK 762 (963)
T ss_pred HHHHHHHHHHHHhh-cc-CcchhhccHHHHHHHHHHHhhccchH
Confidence 22332233322211 11 23466799999999999999875543
No 16
>KOG2787|consensus
Probab=95.16 E-value=0.09 Score=52.64 Aligned_cols=107 Identities=25% Similarity=0.256 Sum_probs=72.7
Q ss_pred echHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhh-ccCCCccccCCChHHHHHHHHHHHHhCChHHH---HHHHHHHH
Q psy2024 73 VGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKN-LKNRRFSFLNGDAGPIAVSALIYEALGKQEKL---ESSVQKLK 148 (352)
Q Consensus 73 tG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~-i~~r~iSFL~G~AG~lAV~Aviy~~lgd~~~~---~~~l~~L~ 148 (352)
-|.+|+||++.+.+++|++++|+..|.+--+-.-+. +-.+.+.+..|.||---+-..+|+..+|...+ ..+.+-++
T Consensus 280 HGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~ll 359 (403)
T KOG2787|consen 280 HGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLL 359 (403)
T ss_pred cCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHH
Confidence 589999999999999999999999887755432221 22245777889999755556889999997755 23444444
Q ss_pred hhchhccCCCCCCCCccccchHHHHHHHHHH
Q psy2024 149 ALAPHVVDLRSDIPDEILYGRAGYLYSLLFV 179 (352)
Q Consensus 149 ~l~~~~l~~~~~~pDELLYGRAGYLyALL~L 179 (352)
+.....-+..++-|.-++=|-||-.|-|+=+
T Consensus 360 d~~~~~g~r~pDrpySLfeG~AG~v~~l~Dl 390 (403)
T KOG2787|consen 360 DYGFSHGCRTPDRPYSLFEGVAGTVYLLLDL 390 (403)
T ss_pred hhhhhccCCCCCCChhHHhcccchhhHhhhh
Confidence 4332111112345666778999999877644
No 17
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.12 E-value=48 Score=36.48 Aligned_cols=132 Identities=20% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCCCceeechHHHH-HHHHHHHhccCChHHHHHHHHHHHHHHhhccC-C-CccccCCChHH------HH----HHHHHHH
Q psy2024 66 DHDYSVYVGTSGQA-MFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN-R-RFSFLNGDAGP------IA----VSALIYE 132 (352)
Q Consensus 66 ~~dgglYtG~aGIA-YmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~-r-~iSFL~G~AG~------lA----V~Aviy~ 132 (352)
..|--+||++-|.+ +++.+.++.++|+.|++.|+...+..++.+.. + ...++.|.+.+ || -...+|+
T Consensus 403 ~~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye 482 (667)
T COG1331 403 SRDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYE 482 (667)
T ss_pred CCCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHH
Confidence 46889999999976 77888899999999999999888766665542 2 24466677632 22 2337788
Q ss_pred HhCChHHHHHHH---HHHHhhchh---------------ccCCCCCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHH
Q psy2024 133 ALGKQEKLESSV---QKLKALAPH---------------VVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIH 194 (352)
Q Consensus 133 ~lgd~~~~~~~l---~~L~~l~~~---------------~l~~~~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~ 194 (352)
..+|...++... +.+....-. .+.+......+..=|.|=...+|+.|....++.. ..
T Consensus 483 ~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~-----y~ 557 (667)
T COG1331 483 ATGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDAR-----YL 557 (667)
T ss_pred hhCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchh-----HH
Confidence 888877664322 222221100 0111122334444688889999999998887543 34
Q ss_pred HHHHHHHH
Q psy2024 195 QVVDSILR 202 (352)
Q Consensus 195 ~V~~~II~ 202 (352)
+.+..+++
T Consensus 558 e~A~~~L~ 565 (667)
T COG1331 558 EAAEDILQ 565 (667)
T ss_pred HHHHHHHH
Confidence 44444443
No 18
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.39 E-value=45 Score=35.79 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=70.2
Q ss_pred CceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhccCCCcccc-CCChH--H-H-HHHHHHHHHhCChHHHHHH
Q psy2024 69 YSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFL-NGDAG--P-I-AVSALIYEALGKQEKLESS 143 (352)
Q Consensus 69 gglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~r~iSFL-~G~AG--~-l-AV~Aviy~~lgd~~~~~~~ 143 (352)
-=.|+|..||-.++.+|++.+.|+.||++|+-.|.........++.+=+ .|-|- + + .=.|-+++..||+. ....
T Consensus 174 ~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds-~r~~ 252 (589)
T COG3533 174 VPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHAVRQIYLYIGAADLAEETGDDS-LRQA 252 (589)
T ss_pred cccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhHHHHHHHhhhHHHHHHHhCCHH-HHHH
Confidence 4579999999999999999999999999999999866543321111111 22221 1 1 12567888999966 4445
Q ss_pred HHHHHhhchh----ccC----------CCCCCCCccccchHHHHHHHHHHHhhc
Q psy2024 144 VQKLKALAPH----VVD----------LRSDIPDEILYGRAGYLYSLLFVNKHI 183 (352)
Q Consensus 144 l~~L~~l~~~----~l~----------~~~~~pDELLYGRAGYLyALL~Lrk~~ 183 (352)
+..|-+.+.. +.. .+.+.|++.-|--+=--++++++...+
T Consensus 253 ~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn~~~yAEtCas~~l~~~a~Rm 306 (589)
T COG3533 253 AEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPNRTAYAETCASYNLLKLARRM 306 (589)
T ss_pred HHHHHHHhhhhheEEecccCCccccCCccccCcccchHHHHHHHHHHHHHHHHH
Confidence 5556544421 211 112234444465555566777776655
No 19
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=63.77 E-value=77 Score=32.37 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=39.6
Q ss_pred CCccc--cchHHHHHHHHH-HHhhc-CCC--CChhhhHHHHHHHHHHcChhhhhhcCCCC
Q psy2024 162 PDEIL--YGRAGYLYSLLF-VNKHI-KSV--NIEASLIHQVVDSILRSGQNLSARKKSRV 215 (352)
Q Consensus 162 pDELL--YGRAGYLyALL~-Lrk~~-~~e--~i~~~~I~~V~~~II~SGr~~ak~~~~~~ 215 (352)
|+-.+ -|-|||.|||+. +|+-+ ..+ ...++.++.|+++|.+.|+.+.-+-...|
T Consensus 260 ~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g~~g~vs~~~~~ 319 (357)
T COG4225 260 PGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEEGEVGGVSLGTIV 319 (357)
T ss_pred CCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcccccccceeecCccc
Confidence 44444 699999999988 55433 322 35678899999999999999988754333
No 20
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=56.88 E-value=37 Score=35.82 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=49.1
Q ss_pred CceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhc---c--CCCcccc-----CCCh---H-HHHHHHHHHHHh
Q psy2024 69 YSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNL---K--NRRFSFL-----NGDA---G-PIAVSALIYEAL 134 (352)
Q Consensus 69 gglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i---~--~r~iSFL-----~G~A---G-~lAV~Aviy~~l 134 (352)
.-.+.|..|+...+.+|++.++|+.||++|+.+++...... . ....... .|.+ . .+.-.|.+|+..
T Consensus 171 ~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~t 250 (520)
T PF07944_consen 171 KMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEET 250 (520)
T ss_pred cccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHh
Confidence 45778999999999999999999999999999998654322 1 0011111 1211 1 122346889999
Q ss_pred CChHHHH
Q psy2024 135 GKQEKLE 141 (352)
Q Consensus 135 gd~~~~~ 141 (352)
||+...+
T Consensus 251 gd~~~~~ 257 (520)
T PF07944_consen 251 GDEEYLD 257 (520)
T ss_pred CCHHHHH
Confidence 9977443
No 21
>cd00330 phosphagen_kinases Phosphagen (guanidino) kinases. Phosphagen (guanidino) kinases are enzymes that transphosphorylate a high energy phosphoguanidino compound, like phosphocreatine (PCr) in the case of creatine kinase (CK) or phosphoarginine in the case of arginine kinase, which is used as an energy-storage and -transport metabolite, to ADP, thereby creating ATP. The substrate binding site is located in the cleft between the N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain. In higher eukaryotes, CK exists in tissue-specific (muscle, brain), as well as compartment-specific (mitochondrial and cytosolic) isoforms. They are either coupled to glycolysis (cytosolic form) or oxidative phosphorylation (mitochondrial form). Besides CK and AK, the most studied members of this family are also other phosphagen kinases with different substrate specificities, like glycocyamine kinase (GK), lombricine kinase (LK), taurocyamine kinase (TK) a
Probab=51.05 E-value=13 Score=35.78 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=45.9
Q ss_pred cccc-----ccccCCCCCCCC----CcchHHHH-H---HHhhhhhhhccccccccccccccccCCCccc--ceeeeeccc
Q psy2024 219 NFLM-----LISCGNNTNQPT----KSHLYIIL-F---CSSLCDSVKMETKHSSRHHENKYKYGEGEKS--KLFTVENKE 283 (352)
Q Consensus 219 Y~Wh-----~~~c~~~~~~g~----~~~l~~i~-~---~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 283 (352)
|+|+ +.+|+.|+.+|. +=|||=+. + +.+.|+..++.-+- -||||.++ .+|.+.|+.
T Consensus 140 fAfd~~lGyLTscPtNlGTGlRaSV~lhLP~L~~~~~~~~~~~~~lgl~vRG---------~~Ge~s~~~g~i~~ISN~~ 210 (236)
T cd00330 140 FAFNEQRGYLTSCPTNLGTGLRASVHIHLPALVKTINRIIPAINQLGLQVRG---------TYGEGTEAVGGVFDISNQI 210 (236)
T ss_pred ccccCCeEEEeeCCCCCCcceEEEEEEECcchhhcHHHHHHHHHHcCceEee---------cCCCCCcccCCEEEEEccc
Confidence 6665 899999999996 67999877 5 77888888876542 58888665 589999987
Q ss_pred eee
Q psy2024 284 KIV 286 (352)
Q Consensus 284 ~~~ 286 (352)
.+-
T Consensus 211 tLG 213 (236)
T cd00330 211 RLG 213 (236)
T ss_pred ccc
Confidence 654
No 22
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=48.55 E-value=1.2e+02 Score=32.43 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=41.8
Q ss_pred echHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhccCCCccccCCChHHHHHHHHHHHHhCChHHH
Q psy2024 73 VGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKL 140 (352)
Q Consensus 73 tG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~r~iSFL~G~AG~lAV~Aviy~~lgd~~~~ 140 (352)
-.++-..|+++.|++.+.-..-.+.|.++|+.+..+-+ -..=.+.+-|-|+++.||-..+
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP--------t~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP--------TLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHCCCHHHH
Confidence 45666788888889886443335689999997766433 1233577888999999995544
No 23
>cd07930 bacterial_phosphagen_kinase Phosphagen (guanidino) kinases found in bacteria. Phosphagen (guanidino) kinases are enzymes that transphosphorylate a high energy phosphoguanidino compound, such as phosphocreatine (PCr) or phosphoarginine, which is used as an energy-storage and -transport metabolite, to ADP, thereby creating ATP. This subfamily is specific to bacteria and lacks an N-terminal domain, which otherwise forms part of the substrate binding site. Most of the catalytic residues are found in the larger C-terminal domain, however, which appears conserved in these bacterial proteins. Their functions have not been characterized.
Probab=38.81 E-value=21 Score=34.10 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=45.5
Q ss_pred cccc-----ccccCCCCCCCC----CcchHHHH-H-----HHhhhhhhhccccccccccccccccCCCccc--ceeeeec
Q psy2024 219 NFLM-----LISCGNNTNQPT----KSHLYIIL-F-----CSSLCDSVKMETKHSSRHHENKYKYGEGEKS--KLFTVEN 281 (352)
Q Consensus 219 Y~Wh-----~~~c~~~~~~g~----~~~l~~i~-~-----~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 281 (352)
|+|+ +.+|+.|+.+|. +=|||=+. + +...|+..++..+ =-||||.++ .+|.+.|
T Consensus 133 fAfd~~lGYLTscPtNlGTGlraSv~lhLP~L~~~~~i~~~~~~~~~~gl~vr---------g~~ge~s~~~g~iy~ISN 203 (232)
T cd07930 133 YAFDEKLGYLTACPTNVGTGLRASVMLHLPALVLTGQINRILNALSQLGLAVR---------GLYGEGSEALGNIYQISN 203 (232)
T ss_pred ccccCCceEEeeCCCCCCcceEEEEEEEcccccccccHHHHHHHHHHCCeEEe---------cccCCCCcccCCEEEEEC
Confidence 6666 899999999996 66889776 2 7777887777652 348888777 5999999
Q ss_pred cceeee
Q psy2024 282 KEKIVL 287 (352)
Q Consensus 282 ~~~~~~ 287 (352)
+..+=.
T Consensus 204 ~~tLG~ 209 (232)
T cd07930 204 QVTLGL 209 (232)
T ss_pred cccccC
Confidence 876643
No 24
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.61 E-value=1.9e+02 Score=27.07 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=44.6
Q ss_pred HHHHHHHHHhc---cCC----hHHHHHHHHHHHHHHhhccCCCccccCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy2024 78 QAMFYYIYYQR---THD----SKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKAL 150 (352)
Q Consensus 78 IAYmflrL~~~---~~d----~~yL~~A~e~I~~~l~~i~~r~iSFL~G~AG~lAV~Aviy~~lgd~~~~~~~l~~L~~l 150 (352)
+|++++|++=. .+| ..+++.|.+....+...-.. ...-...+.++-+.+.+++.+|+.+++.+.+.++...
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~--~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF--PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC--CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 35555555433 333 46888888888766553331 1111223456667789999999999888888777664
No 25
>cd00716 creatine_kinase_like Phosphagen (guanidino) kinases such as creatine kinase and similar enzymes. Eukaryotic creatine kinase-like phosphagen (guanidino) kinases are enzymes that transphosphorylate a high energy phosphoguanidino compound, like phosphocreatine (PCr) in the case of creatine kinase (CK), which is used as an energy-storage and -transport metabolite, to ADP, thereby creating ATP. The substrate binding site is located in the cleft between the N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain. In higher eukaryotes, CKs are found as tissue-specific (muscle, brain), as well as compartment-specific (mitochondrial, cytosolic, and flagellar) isoforms. Mitochondrial and cytoplasmic CKs are dimeric or octameric, while the flagellar isoforms are trimers with three CD domains fused as a single protein chain. CKs are either coupled to glycolysis (cytosolic form) or oxidative phosphorylation (mitochondrial form). Besides CK, one
Probab=36.54 E-value=25 Score=35.85 Aligned_cols=55 Identities=9% Similarity=0.228 Sum_probs=42.7
Q ss_pred ccccCCCCCCCC----CcchHHHH---HHHhhhhhhhccccccccccccccccCCCccc--ceeeeeccceee
Q psy2024 223 LISCGNNTNQPT----KSHLYIIL---FCSSLCDSVKMETKHSSRHHENKYKYGEGEKS--KLFTVENKEKIV 286 (352)
Q Consensus 223 ~~~c~~~~~~g~----~~~l~~i~---~~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 286 (352)
+.+|+.|+.+|. +=|||-+. .+..+|+.+++... =-||||..+ .+|.+.|+..+-
T Consensus 264 LTsCPTNlGTGlRASV~i~LP~L~~~~~~~~i~~~lgLqvR---------G~~Ge~se~~G~vydISN~~~LG 327 (357)
T cd00716 264 VLTCPSNLGTGLRASVHVKLPNLSKDPRFDEILRKLRLQKR---------GTGGVDTAAVGGTYDISNADRLG 327 (357)
T ss_pred eeeCCCCCCcccEEEEEEEccccccchhHHHHHHHcCCeee---------ccCCCCccccCCEEEEEcccccc
Confidence 899999999996 67999887 38888998887632 247887554 689999987654
No 26
>cd07932 arginine_kinase_like Phosphagen (guanidino) kinases such as arginine kinase and similar enzymes. Eukaryotic arginine kinase-like phosphagen (guanidino) kinases are enzymes that transphosphorylate a high energy phosphoguanidino compound, like phosphoarginine in the case of arginine kinase (AK), which is used as an energy-storage and -transport metabolite, to ADP, thereby creating ATP. The substrate binding site is located in the cleft between the N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain. Besides AK, one of the most studied members of this family, this model also represents a phosphagen kinase with different substrate specificity, hypotaurocyamine kinase (HTK).
Probab=32.48 E-value=54 Score=33.39 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=44.1
Q ss_pred cccc-----ccccCCCCCCCC----CcchHHHH-H---HHhhhhhhhccccccccccccccccCCCccc--ceeeeeccc
Q psy2024 219 NFLM-----LISCGNNTNQPT----KSHLYIIL-F---CSSLCDSVKMETKHSSRHHENKYKYGEGEKS--KLFTVENKE 283 (352)
Q Consensus 219 Y~Wh-----~~~c~~~~~~g~----~~~l~~i~-~---~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 283 (352)
|+|+ +.+|+.|+.+|. +=|||=+. . +.++|+..++.-. =-||||.++ .+|.+.|+.
T Consensus 253 FAfd~~lGYLTsCPtNlGTGlRASV~vhLP~L~~~~~~~~~~~~~lgL~vR---------G~~Ge~se~~G~iydISN~~ 323 (350)
T cd07932 253 FARDDRLGYLTFCPTNLGTTLRASVHIKLPKLSKDPPRLKEICEKYNLQVR---------GTHGEHTESVGGVYDISNKR 323 (350)
T ss_pred eeecCCceEEeeCCCCCCccceeEEEEECcccccchHHHHHHHHHcCceEe---------ecCCCCCcccCCEEEEEccc
Confidence 6776 899999999996 77899877 3 6777877776532 357887665 589999986
Q ss_pred eee
Q psy2024 284 KIV 286 (352)
Q Consensus 284 ~~~ 286 (352)
.+=
T Consensus 324 ~LG 326 (350)
T cd07932 324 RLG 326 (350)
T ss_pred ccc
Confidence 654
No 27
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=29.87 E-value=84 Score=32.31 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=39.1
Q ss_pred CceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhc-cC--C-CccccCCChH
Q psy2024 69 YSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNL-KN--R-RFSFLNGDAG 122 (352)
Q Consensus 69 gglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i-~~--r-~iSFL~G~AG 122 (352)
.+.=.|..=|||.++..++.+++..|++.|..+++..++.- .. . ..-++.|..|
T Consensus 112 NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~g 169 (376)
T PRK11097 112 NSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVG 169 (376)
T ss_pred CCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcccccCCCceeecccccc
Confidence 34455666799999999999999999999999998777532 11 1 2335556654
No 28
>cd07931 eukaryotic_phosphagen_kinases Phosphagen (guanidino) kinases mostly found in eukaryotes. Phosphagen (guanidino) kinases are enzymes that transphosphorylate a high energy phosphoguanidino compound, like phosphocreatine (PCr) in the case of creatine kinase (CK) or phosphoarginine in the case of arginine kinase, which is used as an energy-storage and -transport metabolite, to ADP, thereby creating ATP. The substrate binding site is located in the cleft between the N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain. In higher eukaryotes, CK exists in tissue-specific (muscle, brain), as well as compartment-specific (mitochondrial and cytosolic) isoforms. They are either coupled to glycolysis (cytosolic form) or oxidative phosphorylation (mitochondrial form). Besides CK and AK, the most studied members of this family are also other phosphagen kinases with different substrate specificities, like glycocyamine kinase (GK), lombricine k
Probab=29.58 E-value=39 Score=34.18 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=44.6
Q ss_pred cccc-----ccccCCCCCCCC----CcchHHHH-H---HHhhhhhhhccccccccccccccccCCCccc--ceeeeeccc
Q psy2024 219 NFLM-----LISCGNNTNQPT----KSHLYIIL-F---CSSLCDSVKMETKHSSRHHENKYKYGEGEKS--KLFTVENKE 283 (352)
Q Consensus 219 Y~Wh-----~~~c~~~~~~g~----~~~l~~i~-~---~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 283 (352)
|+|+ +.+|+.|+.+|. +=|||=+. + +...|+..++.-. =.|||+.++ .+|.+.|+.
T Consensus 242 Fa~d~~lGYLTsCPtNlGTGlRASV~v~LP~L~~~~~~~~~~~~~lgL~vR---------G~~Ge~s~~~g~iydISN~~ 312 (338)
T cd07931 242 FAHDPHLGYITSCPTNLGTGMRASVHVKLPNLIKDMDKLKAIARKLGLQIR---------GIGGEHSESEGGVVDISNKR 312 (338)
T ss_pred hcccCCceeEeeCCCCCccceEEEEEEEcchhhhcHHHHHHHHHHcCceEe---------ecCCCCccccCCEEEEEchh
Confidence 5665 899999999995 77999777 5 7778887776542 357887665 589999987
Q ss_pred eee
Q psy2024 284 KIV 286 (352)
Q Consensus 284 ~~~ 286 (352)
.+=
T Consensus 313 rLG 315 (338)
T cd07931 313 RLG 315 (338)
T ss_pred hcc
Confidence 654
No 29
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=22.44 E-value=3.7e+02 Score=27.04 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCCCCCceeech---------------HHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy2024 42 KVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGT---------------SGQAMFYYIYYQRTHDSKYLDKAQKLIERSL 106 (352)
Q Consensus 42 ~L~~ai~~lL~~i~~~~~~~d~~~~~dgglYtG~---------------aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l 106 (352)
......+++.+.+..++... .+.|||+=-. +..+.+..||++..+|+.|+++|++..+=..
T Consensus 113 ~yL~~A~~i~~~~~~~wd~~----~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~ 188 (370)
T PF03663_consen 113 KYLDLAKEIFDFLISGWDDT----SCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMR 188 (370)
T ss_dssp HHHHHHHHHHHHHHHTB-SG----G-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCc----cCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhh
Confidence 45666777777776666442 2356664331 2344566789999999999999999887444
Q ss_pred h-hcc-CC---Ccccc-----CC---------ChHHH-HHHHHHHHHhCChHHHHHHHHHHHhhc
Q psy2024 107 K-NLK-NR---RFSFL-----NG---------DAGPI-AVSALIYEALGKQEKLESSVQKLKALA 151 (352)
Q Consensus 107 ~-~i~-~r---~iSFL-----~G---------~AG~l-AV~Aviy~~lgd~~~~~~~l~~L~~l~ 151 (352)
. .+- .. -.+-+ |. +.|++ ..++.+|+..++++...+.+.++.+.+
T Consensus 189 ~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~ 253 (370)
T PF03663_consen 189 DSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAA 253 (370)
T ss_dssp H-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHH
T ss_pred cceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4 332 11 01111 11 23664 456688989877633333444444443
No 30
>PRK01059 ATP:guanido phosphotransferase; Provisional
Probab=22.43 E-value=57 Score=33.10 Aligned_cols=59 Identities=19% Similarity=0.337 Sum_probs=42.6
Q ss_pred ecccc-----ccccCCCCCCCC----CcchHHHH---HHHhhhh---hhhccccccccccccccccCCCccc--ceeeee
Q psy2024 218 INFLM-----LISCGNNTNQPT----KSHLYIIL---FCSSLCD---SVKMETKHSSRHHENKYKYGEGEKS--KLFTVE 280 (352)
Q Consensus 218 MY~Wh-----~~~c~~~~~~g~----~~~l~~i~---~~~~lc~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 280 (352)
=|+|+ +.+|+.|+.+|. .=|||=+. .+..+|+ .+++.. .=-||||.++ .+|.+.
T Consensus 152 ~fAfd~~~GYLTscPtNlGTGlRaSV~lhLP~L~~~~~i~~i~~~~~~lGl~v---------RG~yGe~se~~G~iy~IS 222 (346)
T PRK01059 152 DYAFDEKLGYLTSCPTNVGTGLRASVMLHLPALVLTKRINRILQAINQLGLTV---------RGIYGEGSEALGNIYQIS 222 (346)
T ss_pred cccccCCeEEEeeCCCCCCcceEEEEEEEccccCcchhHHHHHHHHHhcCeEE---------eecCCCCCcccCCEEEEE
Confidence 37776 899999999996 77999776 3777764 444433 2358888775 689998
Q ss_pred cccee
Q psy2024 281 NKEKI 285 (352)
Q Consensus 281 ~~~~~ 285 (352)
|+..+
T Consensus 223 Nq~tL 227 (346)
T PRK01059 223 NQITL 227 (346)
T ss_pred ccccc
Confidence 87554
No 31
>PF10849 DUF2654: Protein of unknown function (DUF2654); InterPro: IPR022558 This entry is represented by Bacteriophage T4, a-gt.4; it is a family of uncharacterised viral proteins.
Probab=21.49 E-value=1.3e+02 Score=24.00 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=33.3
Q ss_pred HHHHHHHhhchhccCCCCCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHHHH
Q psy2024 142 SSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQV 196 (352)
Q Consensus 142 ~~l~~L~~l~~~~l~~~~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V 196 (352)
.-+++|...++.|+-. . -..||.||+-.||..+.+ ++.++.|...
T Consensus 14 rEI~RL~~HAe~al~~-~--------Nk~~Y~YAI~KLR~i~kQ-p~~~~~i~~m 58 (70)
T PF10849_consen 14 REIKRLKKHAEEALIE-N--------NKEGYVYAIKKLRDIYKQ-PYNDELIETM 58 (70)
T ss_pred HHHHHHHHHHHHHHHh-c--------CHHHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 4577888888776411 1 578999999999998876 7777766554
No 32
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=20.53 E-value=8.8e+02 Score=25.54 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=65.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHH---HhhccCC--CccccCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhhchh--
Q psy2024 81 FYYIYYQRTHDSKYLDKAQKLIERS---LKNLKNR--RFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPH-- 153 (352)
Q Consensus 81 mflrL~~~~~d~~yL~~A~e~I~~~---l~~i~~r--~iSFL~G~AG~lAV~Aviy~~lgd~~~~~~~l~~L~~l~~~-- 153 (352)
.+.-.++..+++..++.|.++.+-. .+.+... .....+|-.|..-+.+-+|+..||+..++ ..++|.+..-.
T Consensus 133 gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~-lA~~f~~~~~~~~ 211 (520)
T PF07944_consen 133 GLIDYYEATGNERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLD-LAEYFVDQRGFDP 211 (520)
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCC
Confidence 3444456678888888888877755 3333321 23345677788777889999999977553 44455443210
Q ss_pred ---ccCCC---CCCCCccc-cc-hHHHHHHH-HHHHhhcCCCCChhhhHHHHHHHHHH
Q psy2024 154 ---VVDLR---SDIPDEIL-YG-RAGYLYSL-LFVNKHIKSVNIEASLIHQVVDSILR 202 (352)
Q Consensus 154 ---~l~~~---~~~pDELL-YG-RAGYLyAL-L~Lrk~~~~e~i~~~~I~~V~~~II~ 202 (352)
.-.++ ..-.++.. +. |+.|+++- .-+....+++.+ .+.....-+.|+.
T Consensus 212 ~~~~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~-~~a~~~~w~~v~~ 268 (520)
T PF07944_consen 212 YDLAYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEY-LDAAENFWDNVVR 268 (520)
T ss_pred CchhhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHH-HHHHHHHHHHHHh
Confidence 00000 00112222 22 77787765 455556665443 2344444444443
Done!