RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2024
(352 letters)
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like
protein. This family contains the lanthionine synthetase
C-like proteins 1 and 2 which are related to the
bacterial lanthionine synthetase components C (LanC).
LANCL1 and LANCL2 (testes-specific adriamycin
sensitivity protein) are thought to be peptide-modifying
enzyme components in eukaryotic cells. Both proteins are
produced in large quantities in the brain and testes and
may have role in the immune surveillance of these
organs.
Length = 343
Score = 135 bits (342), Expect = 7e-37
Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)
Query: 72 YVGTSGQAMFYYIYYQR----THDSKYLDKAQKLIERSLKNLKN-RRFSFLNGDAGPIAV 126
Y G +G A + Y+ T+D YL A + I+ SL+ + + RR SFL G+AG AV
Sbjct: 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAV 60
Query: 127 SALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSV 186
A +Y L +++++ + K L VV S +PDE+LYGRAGYLY+LLF+NK
Sbjct: 61 GAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFK 120
Query: 187 NIEASLIHQVVDSILRSGQNLSARKKSRVPL 217
I +SLI + D+IL SG+ +A+ ++ PL
Sbjct: 121 KIPSSLIKSICDAILESGRTGAAKYRAPCPL 151
Score = 35.3 bits (82), Expect = 0.039
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 74 GTSGQAMFYYIYYQRTHDSKYLDKAQK----LIERSLKNLKN---RRFSFLNGDAGPI 124
G +G A + + Y+ T D KYL +A K LI KN R FS G AG
Sbjct: 271 GIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINYGFKNGARIPDRPFSLFEGLAGTA 328
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein.
Lanthionines are thioether bridges that are putatively
generated by dehydration of Ser and Thr residues
followed by addition of cysteine residues within the
peptide. This family contains the lanthionine synthetase
C-like proteins 1 and 2 which are related to the
bacterial lanthionine synthetase components C (LanC).
LANCL1 (P40 seven-transmembrane-domain protein) and
LANCL2 (testes-specific adriamycin sensitivity protein)
are thought to be peptide-modifying enzyme components in
eukaryotic cells. Both proteins are produced in large
quantities in the brain and testes and may have role in
the immune surveillance of these organs. Lanthionines
are found in lantibiotics, which are peptide-derived,
post-translationally modified antimicrobials produced by
several bacterial strains. This region contains seven
internal repeats.
Length = 352
Score = 108 bits (272), Expect = 7e-27
Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 68 DYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIE---RSLKNLKNRRFSFLNGDAGPI 124
D S+Y G +G A+F Y+ T D KYL+ A K ++ +SL + SF G AG
Sbjct: 4 DLSLYTGLAGIALFLLELYKVTGDEKYLELAHKYLKKIAKSLSSSGRDSISFFCGLAGIA 63
Query: 125 AVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIK 184
A A+ + LG + L +++L L + + ++P +++ GRAG L LL +NK +
Sbjct: 64 AALAVASKLLGDYQLLLDYLKRLLELIENEILEDKNLPYDVISGRAGILLYLLLLNKELG 123
Query: 185 SVNIEASLIHQVVDSILRSGQNLSA 209
LI ++++++L SG+NL++
Sbjct: 124 E-EKVLDLILKILETLLESGRNLAS 147
Score = 56.2 bits (136), Expect = 7e-09
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 14/151 (9%)
Query: 66 DHDYSVYVGTSGQAMFYYIYYQRTHDSK----YLDKAQKLIERSLKNLKNRRFSFLNGDA 121
S + G +G A + + D + YL + +LIE + KN + ++G A
Sbjct: 50 RDSISFFCGLAGIAAALAVASKLLGDYQLLLDYLKRLLELIENEILEDKNLPYDVISGRA 109
Query: 122 GPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIP------DEILYGRA----G 171
G + L+ + LG+++ L+ ++ L+ L +L S+ P + G A G
Sbjct: 110 GILLYLLLLNKELGEEKVLDLILKILETLLESGRNLASESPLLYEWYGTVNLGFAHGLSG 169
Query: 172 YLYSLLFVNKHIKSVNIEASLIHQVVDSILR 202
LY+LL + LI + ++ L
Sbjct: 170 ILYALLLLYLKGTGNEKLLELIKKALNYELS 200
Score = 37.0 bits (86), Expect = 0.010
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 42 KVWATLTRLIEDIDSEYETSDKFRDHDYSVYV--GTSGQAMFYYIYYQRTHDSKYLDKAQ 99
K L + S + D V G G + + ++ + L++A+
Sbjct: 193 KALNYELSLKFPDSGNWPDSRG-NERDRRVAWCHGAPGILLALLKAAKALNEEELLEEAE 251
Query: 100 KLIERSLKNLKNR-RFSFLNGDAGPIAVSALIYEALGKQEKLE 141
+ +E K S +G +G + + L+Y ++ LE
Sbjct: 252 EALEVVWKKGLLLKNPSLCHGLSGNLYILLLLYRLTNDEKYLE 294
Score = 35.4 bits (82), Expect = 0.031
Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 23/195 (11%)
Query: 46 TLTRLIEDIDSEYETSDKFRDHDYSVYV-GTSG-QAMFYYIYYQRTHDSKYLDKAQKLI- 102
TL ++ SE ++ + G SG +Y + T + K L+ +K +
Sbjct: 137 TLLESGRNLASESPLLYEWYGTVNLGFAHGLSGILYALLLLYLKGTGNEKLLELIKKALN 196
Query: 103 -ERSLK------------NLKNRRFSFLNGDAGPIAVS-ALIYEALGKQEKLESSVQKLK 148
E SLK N ++RR ++ +G G I ++ +AL ++E LE + + L+
Sbjct: 197 YELSLKFPDSGNWPDSRGNERDRRVAWCHGAPG-ILLALLKAAKALNEEELLEEAEEALE 255
Query: 149 ALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLS 208
+ + L++ + +G +G LY LL + + ++ + IL G+ L
Sbjct: 256 VVWKKGLLLKNPS---LCHGLSGNLYILLLLYRLTNDEKYL-ERANKFAEKILDYGKELG 311
Query: 209 ARKKSRVPLINF-LM 222
+ +F LM
Sbjct: 312 WLRGLPGGDESFGLM 326
Score = 34.3 bits (79), Expect = 0.090
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 49 RLIEDIDSEYET--SDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSL 106
L+E+ + E + S+ G SG + Y+ T+D KYL++A K E+ L
Sbjct: 245 ELLEEAEEALEVVWKKGLLLKNPSLCHGLSGNLYILLLLYRLTNDEKYLERANKFAEKIL 304
Query: 107 KNLKNRR-----------FSFLNGDAG 122
K F + G AG
Sbjct: 305 DYGKELGWLRGLPGGDESFGLMEGIAG 331
>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins. LanC is the cyclase enzyme
of the lanthionine synthetase. Lanthionine is a
lantibiotic, a unique class of peptide antibiotics. They
are ribosomally synthesized as a precursor peptide and
then post-translationally modified to contain thioether
cross-links called lanthionines (Lans) or
methyllanthionines (MeLans), in addition to
2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine
(Dhb). These unusual amino acids are introduced by the
dehydration of serine and threonine residues, followed
by thioether formation via addition of cysteine thiols,
catalysed by LanB and LanC or LanM. LanC, the cyclase
component, is a zinc metalloprotein, whose bound metal
has been proposed to activate the thiol substrate for
nucleophilic addition. A related domain is also present
in LanM and other pro- and eukaryotic proteins of
unknown function.
Length = 343
Score = 96.1 bits (239), Expect = 2e-22
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 72 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKL---IERSLKNLKNRRFSFLNGDAGPIAVSA 128
Y G +G A+ Y+ T D KY D A K I +SL +L + S +G AG A
Sbjct: 1 YHGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALA 60
Query: 129 LIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNI 188
+ + LG QE L+ ++ L L +++ D+ ++L G AG L +LL + K I
Sbjct: 61 ALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGE-EI 119
Query: 189 EASLIHQVVDSILRSGQNLSARKK 212
LI +++D +L G+N + +
Sbjct: 120 FLELIRKILDYLLELGKNGDGKIR 143
Score = 33.7 bits (77), Expect = 0.13
Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 26/159 (16%)
Query: 45 ATLTRLIEDIDSEYE-TSDKFRDHDYSVYV----GTSGQAMFYYIYYQRTHDSKYLDKAQ 99
L L+E + + V + G +G + + Y++T D +
Sbjct: 126 KILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIK 185
Query: 100 KLI--ERSLK---------NLKNRRFSFL----NGDAGPIAVS-ALIYEALGKQEKLESS 143
L+ ER L+ + N FL +G G I ++ L Y+ALG + E++
Sbjct: 186 ALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPG-ILLALLLAYKALGDDKYDEAA 244
Query: 144 VQKLKALAPHVVDLRSDIPDEILY-GRAGYLYSLLFVNK 181
+ L+ ++ + L G AG L LL + K
Sbjct: 245 EKALELA---WKRGLLELKNPGLCHGIAGNLLILLLLYK 280
Score = 31.3 bits (71), Expect = 0.80
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 74 GTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN----------RRFSFLNGDAG 122
G +G + + Y+ T D K+L +A L + + R + G AG
Sbjct: 267 GIAGNLLILLLLYKLTGDLKFLARALALALLLISHANGWLCGGDSTGDRSPGLMTGLAG 325
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein
LanM. Members of this family are known generally as
LanM, a multifunctional enzyme of lantibiotic
biosynthesis. This catalysis by LanM distinguishes the
type 2 lantibiotics, such as mersacidin, cinnamycin, and
lichenicidin, from LanBC-produced type 1 lantibiotics
such as nisin and subtilin. The N-terminal domain
contains regions associated with Ser and Thr
dehydration. The C-terminal region contains a pfam05147
domain, which catalyzes the formation of the lanthionine
bridge [Cellular processes, Toxin production and
resistance].
Length = 931
Score = 47.6 bits (114), Expect = 6e-06
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 68 DYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRR-------FSFLNGD 120
+Y G +G A+F T +Y D A+K ++ K L+ + +G
Sbjct: 591 GNDLYDGLAGIALFLAYLAALTGKKRYRDLARKALQPLRKYLETQLRLAKSMGLGAFSGL 650
Query: 121 AGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDE----ILYGRAGYLYSL 176
G I A + + L E L + + L L + I DE ++ G AG + L
Sbjct: 651 GGIIYALAHLGQLLNDSELLNDAKRILNRLEELI------IKDEEFLDLIGGAAGAILVL 704
Query: 177 L 177
L
Sbjct: 705 L 705
Score = 44.9 bits (107), Expect = 5e-05
Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 23/149 (15%)
Query: 45 ATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIER 104
L L + ++++ + + + G G Q +DS+ L+ A++++ R
Sbjct: 623 KALQPLRKYLETQLRLA---KSMGLGAFSGLGGIIYALAHLGQLLNDSELLNDAKRILNR 679
Query: 105 SLKNLKN--RRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIP 162
+ + + G AG I V +YE G E LE A H++
Sbjct: 680 LEELIIKDEEFLDLIGGAAGAILVLLNLYEVTGDPEVLE----LAIACGEHLLKQAVKEE 735
Query: 163 DEILY--------------GRAGYLYSLL 177
I + G AG ++LL
Sbjct: 736 GGIAWKTPQDEKPLTGFSHGAAGIAWALL 764
Score = 33.4 bits (77), Expect = 0.18
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 74 GTSGQAMFYYIYYQRTHDSKYLDKAQKLI--ERSLKNLKNRRFSFLNGDAGPIAVSA 128
G +G A Y+ T D +YL+ A++ + ERSL + + + L +AGP A
Sbjct: 755 GAAGIAWALLRLYKVTGDQRYLEAAKEALAYERSLFDPEEGNWPDLREEAGPSFPVA 811
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins. LanM is a bifunctional
enzyme, involved in the synthesis of class II
lantibiotics. It is responsible for both the dehydration
and the cyclization of the precursor-peptide during
lantibiotic synthesis. The C-terminal domain shows
similarity to LanC, the cyclase component of the lan
operon, but the N terminus seems to be unrelated to the
dehydratase, LanB.
Length = 825
Score = 45.0 bits (107), Expect = 5e-05
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 24/154 (15%)
Query: 68 DYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN-----RRFSFLNGDAG 122
+Y G++G A+F Q T D +Y A+K+++ +K+L +G G
Sbjct: 486 GNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGG 545
Query: 123 PIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDE----ILYGRAGYLYSLLF 178
+ AL + LGK K + + K + + I + + G AG + LL
Sbjct: 546 --ILYALTH--LGKLLKDDRLLNLAKEILDL---IDELIEKDEKLDFISGAAGLILVLLS 598
Query: 179 VNKHIKSVNIEASLIHQVVDSILRSGQNLSARKK 212
+ + S +D L+ G +L
Sbjct: 599 LYELFLSER--------FLDLALKCGDHLLENAS 624
Score = 40.8 bits (96), Expect = 0.001
Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 24/192 (12%)
Query: 32 KIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYV----GTSGQAMFYYIYYQ 87
++ L F L+E+ +E + G SG A Y+
Sbjct: 601 ELFLSERFLDLALKCGDHLLENASNE---DGGIGPAEQPNLTGFAHGASGIAWALLRLYK 657
Query: 88 RTHDSKYLDKAQKLI--ERSLKN------LKNRRFSFL----NGDAGPIAVSALIYEALG 135
T DS+YL A K + ER L + + SF +G G I ++ L
Sbjct: 658 VTGDSRYLKLAHKALKYERRLFSEEGWNWPRKDGNSFSAAWCHGAPG-ILLARLELLKFN 716
Query: 136 KQEKLESSVQKLKALAPHVVDLRSDIPDEIL-YGRAGYLYSLLFVNKHIKSVNIEASLIH 194
+ +++ +A + L +G G L LL+ K ++ L +
Sbjct: 717 DLDD--EELKEEIEIALKTTLKEGFGNNHSLCHGDLGNLEILLYAAKAFGDEKLQ-ELAN 773
Query: 195 QVVDSILRSGQN 206
+ +L G+
Sbjct: 774 SLAIKVLSQGKK 785
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 38.6 bits (90), Expect = 0.005
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
Query: 70 SVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRF----SFLNGDAGPIA 125
+Y G++G A+F+ T Y + A K ++ S K++ N G +G
Sbjct: 644 DLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFTGLSGYFY 703
Query: 126 VSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKS 185
IY ++S+ ++ L + +S PD + G AG + L+ + K
Sbjct: 704 ALWKIYSVTRDNYLIQSAENSIRHLEI--LVQKSKDPD-FINGLAGVICVLVSIYKLTDE 760
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like.
Length = 109
Score = 32.7 bits (75), Expect = 0.069
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 47 LTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSL 106
L R +E I + + T+ A D++ L+ I++++
Sbjct: 1 LERAVEYILNTQNPDGSWSYSSGGDVSVTAALAR----ALALAGDARVLEA----IKKAV 52
Query: 107 KNLKNR-----RFSFLNGDAGP----IAVSALIYEALGKQEKLESSVQKLK 148
+ L ++ F + G+ V+ LIY G EKLE V+ +
Sbjct: 53 EWLLDQQQEDGGFGYDGGEYAYSTATYIVALLIYGIAGDDEKLERGVEWIL 103
>gnl|CDD|240108 cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain
associated with serine threonine kinases. Some members
of this subgroup lack the zinc binding site and the
active site residues, and therefore are most likely
inactive. The function of this domain is unknown.
Length = 321
Score = 33.5 bits (77), Expect = 0.15
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 47 LTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSL 106
L R + D + + R + G++G + T D ++ D +
Sbjct: 172 LARAVVDDGGLLQVDEGAR-LLPYLCSGSAGLGLLMLRLEAITGDKRWRD----EADGIA 226
Query: 107 KNLKNRRFSF---LNGDAGPIAVSALIYEALGKQEKLESSVQKL 147
+ ++ +G AG A A G +++ ++L
Sbjct: 227 HAALSSCYANPGLFSGTAGLGAH-LNDLAAEGDNALYKAAAERL 269
Score = 28.5 bits (64), Expect = 4.9
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 74 GTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLK 107
G +G A+F Y+ T DS+YL+ A++ +++ L
Sbjct: 140 GWAGIALFLLRLYKATGDSRYLELAEEALDKELA 173
>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine
synthetase. Lanthinoine is a lantibiotic, a unique class
of peptide antibiotics. They are ribosomally synthesized
as precursor peptides and then post-translationally
modified to contain thioether cross-links called
lanthionines (Lans) or methyllanthionines (MeLans) in
addition to 2,3-didehydroalanine (Dha) and
(Z)-2,3-didehydrobutyrine (Dhb). These unusual amino
acids are introduced by the dehydration of serine and
threonine residues, followed by thioether formation via
addition of cysteine thiols, catalysed by LanB and LanC
or LanM. LanC, the cyclase component, is a zinc
metalloprotein, whose bound metal has been proposed to
activate the thiol substrate for nucleophilic addition.
Length = 382
Score = 33.1 bits (76), Expect = 0.19
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 72 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN 111
G G A+ + T D Y ++ + + ++L L +
Sbjct: 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLS 40
>gnl|CDD|224250 COG1331, COG1331, Highly conserved protein containing a thioredoxin
domain [Posttranslational modification, protein
turnover, chaperones].
Length = 667
Score = 32.7 bits (75), Expect = 0.34
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 68 DYSVYVGTSGQAMFYYIY-YQRTHDSKYLDKAQKLIERSLKNLKNRRF--SFLNGDAGPI 124
D V +G + + D +YL+ A++ + L NL R + G+A
Sbjct: 405 DDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVA 464
Query: 125 AVS--------ALI--YEALGKQEKLE 141
+ L+ YEA G LE
Sbjct: 465 GLLEDYAFLILGLLALYEATGDLAYLE 491
Score = 28.1 bits (63), Expect = 8.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 86 YQRTHDSKYLDKAQKLIERSLKNLK 110
Y+ T D YL+KA +L + ++ +
Sbjct: 481 YEATGDLAYLEKAIELADEAIADFW 505
>gnl|CDD|219125 pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus. This
family represents the C-terminus of D-glucuronyl
C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases
catalyze the conversion of D-glucuronic acid (GlcUA) to
L-iduronic acid (IdceA) units during the biosynthesis of
glycosaminoglycans.
Length = 189
Score = 29.2 bits (66), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 77 GQAM-FYYIYYQRTHDSKYLDKAQKLIE 103
GQA+ YQ T D KYLD A+K +
Sbjct: 33 GQAISVLARAYQLTGDEKYLDAAKKALN 60
>gnl|CDD|227708 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 28.2 bits (63), Expect = 8.7
Identities = 26/130 (20%), Positives = 37/130 (28%), Gaps = 6/130 (4%)
Query: 22 SKLFTVENKEKIVLHPSFETKVWATL---TRLIEDIDSEYETSDKFRDHDYSVYVGTSGQ 78
+ N + I SF ++V AT+ L+ R Y V G
Sbjct: 207 KGFNSDNNIKNIGSKLSFISRVPATIAEAKELLHADLYLKTLKSDERGSPYGTKVVYGGV 266
Query: 79 AMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQE 138
+ K + Q L R K L+ S A K
Sbjct: 267 GQLWVFLLSYKLQKK---EEQTLRTRIEKELEKAEKSLEKLKGREFNCEKDARIAAEKIL 323
Query: 139 KLESSVQKLK 148
K SSV+ L+
Sbjct: 324 KDYSSVEFLE 333
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,171,339
Number of extensions: 1611856
Number of successful extensions: 1572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1558
Number of HSP's successfully gapped: 46
Length of query: 352
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 254
Effective length of database: 6,590,910
Effective search space: 1674091140
Effective search space used: 1674091140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)