RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2024
(352 letters)
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC
{Lactococcus lactis [TaxId: 1358]}
Length = 409
Score = 91.1 bits (225), Expect = 4e-21
Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 15/199 (7%)
Query: 47 LTRLIEDIDSEYET-----SDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKL 101
+ R +E I ++++ + F + ++ G G + + + Y K
Sbjct: 4 IKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNY 63
Query: 102 IERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLR--- 158
IE + L + +G ++ I EK ++ + L + V +
Sbjct: 64 IEYIVSKLSTYGLLTGSLYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEG 123
Query: 159 ------SDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKK 212
+ +++ G +G L LL +N +++ +I+ + + + +S K
Sbjct: 124 FNLENITPPDYDVIEGLSGILSYLLLINDEQYD-DLKILIINFLSNLTKENNGLISLYIK 182
Query: 213 SRVPLINFLMLISCGNNTN 231
S + + N
Sbjct: 183 SENQMSQSESEMYPLGCLN 201
Score = 38.3 bits (88), Expect = 0.001
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 49 RLIEDIDSEYET--SDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSL 106
++ + E+ K Y + G SG ++ + + K+ ++ S
Sbjct: 299 YFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSE 358
Query: 107 KNLKNRR----FSFLNGDAG 122
+ L+ FL G +G
Sbjct: 359 QILEEYGDESGTGFLEGISG 378
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis
[TaxId: 1423]}
Length = 363
Score = 32.8 bits (74), Expect = 0.053
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 78 QAMFYYI---YYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSAL-IYEA 133
Q +F ++ T + +Y + A+ + + + N F DA + +YE
Sbjct: 33 QGVFLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAGLILFPLYEQ 92
Query: 134 LGKQEKLE 141
+ ++
Sbjct: 93 TKDERYVK 100
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
{Bacillus sp. GL1 [TaxId: 84635]}
Length = 377
Score = 31.2 bits (70), Expect = 0.18
Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 42 KVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYY----IYYQRTHDSKYLDK 97
L + + + S+K+ +D + + T G F+ + Y+ T D +Y +
Sbjct: 12 ITARNLKKFGDRFPHVSDGSNKYVLNDNTDW--TDG---FWSGILWLCYEYTGDEQYREG 66
Query: 98 AQKLIERSLKNLKNRRFSFLNGDAGPIAVSALI--YEALGKQEKLESSVQKLKALA 151
A + + S + +R + + D G + + + + + ++ L
Sbjct: 67 AVRTVA-SFRERLDRFENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLM 121
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella
typhimurium [TaxId: 90371]}
Length = 411
Score = 30.5 bits (68), Expect = 0.28
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 82 YYIYYQRTHDSKYLDKAQKLIERSLKNLKNRR----FSFLNGDAGPIA 125
Y Y T DS+Y + QK + +K L + + L+ D
Sbjct: 324 AYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTT 371
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 402
Score = 29.4 bits (65), Expect = 0.66
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 86 YQRTHDSKYLDKAQKLIERSLKNLKNRR----FSFLNGDAGPI 124
Y + D L ++ E + + ++ F +LN +
Sbjct: 327 YSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVA 369
>d1qaza_ a.102.3.1 (A:) Alginate lyase A1-III {Sphingomonas sp., A1
[TaxId: 28214]}
Length = 351
Score = 29.2 bits (65), Expect = 0.83
Identities = 11/102 (10%), Positives = 24/102 (23%), Gaps = 19/102 (18%)
Query: 53 DIDSEYETSDKFRDH-----------DYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKL 101
I Y + + + D+ T G Y T Y +
Sbjct: 60 VIPRRYLSGNHGPVNPDYEPVVTLYRDFEKISATLGNL------YVATGKPVYATCLLNM 113
Query: 102 IERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESS 143
+++ K + ++ V A + +
Sbjct: 114 LDKWAKA--DALLNYDPKSQSWYQVEWSAATAAFALSTMMAE 153
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase
CbhA {Clostridium thermocellum [TaxId: 1515]}
Length = 511
Score = 27.9 bits (61), Expect = 2.0
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 23 KLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSE-YETSDKFRDHDYSVYVGTS----- 76
L VEN + R +E+I+ + Y K + + Y S
Sbjct: 321 TLALVENGLPATDIQKARNNIAKAADRWLENIEEQGYRLPIKQAEDERGGYPWGSNSFIL 380
Query: 77 GQAMFYYIYYQRTHDSKYLDKAQKLIERSL-KNLKNRRFSFLNG 119
Q + Y T DSKYLD I L +N ++ S++ G
Sbjct: 381 NQMIVMGYAYDFTGDSKYLDGMFDGISYLLGRNAMDQ--SYVTG 422
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 26.0 bits (57), Expect = 3.9
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 142 SSVQKLKALAP---HVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQ 195
S+++ A P + L++ P+ +L+ R G Y+L + + S ++ SL +
Sbjct: 1 SAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKR 57
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 27.0 bits (59), Expect = 4.4
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 82 YYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSAL 129
Y +HD KY + ++ +N D ++L
Sbjct: 402 IMFMYHLSHDHKYREWGAEIATSFFENTCVD-----CNDPKLRRFTSL 444
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 26.5 bits (58), Expect = 5.4
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 42 KVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKL 101
+ + L D E + Y+ Y ++ THD KY A +
Sbjct: 339 RTYVKLGPEAFRFDGGVE--AIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEA 396
Query: 102 IE 103
+E
Sbjct: 397 VE 398
>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus
subtilis [TaxId: 1423]}
Length = 152
Score = 25.8 bits (56), Expect = 6.4
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 9 HHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSD 62
NK K GE + + + SF + + +D D + + D
Sbjct: 100 LDTNKMKDGECPVV-EWDRVIGYQDTVADSFIEFFYNKIQEAKDDWDEDEDWDD 152
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,210,136
Number of extensions: 52901
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 20
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)