BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2025
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2
Length = 529
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
++ +GE Q R +VSGL Y+T QL + VV++CNLKP K RGI SQ M+LCAS
Sbjct: 392 KIDVGEEQPRTVVSGLVAYITEEQLQDRLVVLLCNLKPQKMRGIESQAMVLCAS-IEGEP 450
Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
+VE + PPE AG RV++ +G PD L PK+ V+ K+QVDLK +WK
Sbjct: 451 RKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEKLQVDLKISGEFVAQWKEQN 510
Query: 168 LET 170
L T
Sbjct: 511 LMT 513
>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2
SV=1
Length = 528
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
+ +GE R +VSGL Y+ + QL SVV++CNLKP K RGI SQGM+LCAS T
Sbjct: 392 VDVGEANPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCAS-TEGEQK 450
Query: 110 RVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
+VE + PP G+R++I G P+ L PK+ V+ K+QVD + D+ +WKG
Sbjct: 451 QVEPLDPPSGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNF 510
Query: 169 ET 170
T
Sbjct: 511 LT 512
>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Mus musculus GN=Aimp1 PE=1 SV=2
Length = 310
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
+ +GE R +VSGL N++ Q+ N VV++CNLKPAK RG+LSQ M++CAS +
Sbjct: 177 VDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCAS----SPE 232
Query: 110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
+VE++ PP G R+ G PDK L+PK+ +W +IQ DL ++ +KG E
Sbjct: 233 KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPFE 292
>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1
Length = 359
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
+ +GE R ++SGL N++ Q+ N VV++CNLKPAK RGILSQ M++CAS +
Sbjct: 226 VDVGEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVMCAS----SPE 281
Query: 110 RVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLE 169
+VE++ PP G R+ G PDK L+PK+ +W +IQ DL ++ +KG E
Sbjct: 282 KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPFE 341
>sp|Q6DIJ1|SYYC_XENTR Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars
PE=2 SV=1
Length = 528
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 50 LQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVT 109
+ +GE R +VSGL Y+ + QL SVV++CNLKP K RGI SQGM+LCAS T
Sbjct: 392 VDVGEENPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCAS-TEGEQK 450
Query: 110 RVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
+VE + PP G+R++I G P+ L PK+ V+ K+QVD + D+ +WKG
Sbjct: 451 QVEPLDPPTGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNF 510
Query: 169 ET 170
T
Sbjct: 511 LT 512
>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2
Length = 312
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Query: 49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
+ +GE R +VSGL N++ Q+ N V+++CNLKPAK RG+LSQ M++CAS +
Sbjct: 178 EVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCAS----SP 233
Query: 109 TRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
++E++ PP G R+ G PDK L+PK+ +W +IQ DL ++D +KG
Sbjct: 234 EKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPF 293
Query: 169 E 169
E
Sbjct: 294 E 294
>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4
Length = 528
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
++ +GE + R +VSGL ++ +L + VVV+CNLKP K RG+ SQGM+LCAS N
Sbjct: 391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVN- 449
Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
+VE + PP G+RVF+ G PD+ L PK+ V+ K+Q D K D +WK
Sbjct: 450 RKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTN 509
Query: 168 LETVNAQRAAVDLKSDDNGHI 188
T + +V KS G+I
Sbjct: 510 FMT---KMGSVSCKSLKGGNI 527
>sp|Q5ZJ08|SYYC_CHICK Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2
SV=1
Length = 527
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
++ +GE + R +VSGL ++ QL + VV++CNLKP K RG+ SQGM+LCAS +
Sbjct: 390 KIDVGEPEPRTVVSGLVQFVPKEQLQDRLVVLLCNLKPQKMRGVESQGMVLCAS-SVGEP 448
Query: 109 TRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHR 167
+VE + PP C AG+RV++ G PD L PK+ V+ K+Q D + ++ +WK
Sbjct: 449 RQVEPLDPPAECCAGERVYVEGYEDGEPDDELKPKKKVFEKLQADFRISEDCIAQWKERN 508
Query: 168 LETVNAQRAAVDLKSDDNGHI 188
T + ++ KS G I
Sbjct: 509 FLT---KLGSISCKSLKGGSI 526
>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars
PE=2 SV=3
Length = 528
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
++ +GE + R +VSGL ++ +L + VVV+CNLKP K RG+ SQGM+LCAS V
Sbjct: 391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCAS--VEGV 448
Query: 109 TR-VEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWK 164
+R VE + PP G+RVF+ G PD+ L PK+ V+ K+Q D K D+ +WK
Sbjct: 449 SRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISDDCVAQWK 506
>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2
SV=3
Length = 528
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 10/156 (6%)
Query: 38 TIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
T+E+ + L ++ +GE + R +VSGL ++ +L + VVV+CNLKP K RG+ S
Sbjct: 377 TVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVES 436
Query: 95 QGMILCAS-ETYNNVTRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVD 152
QGM+LCAS E N +VE + PP G+RVF+ G PD+ L PK+ V+ K+Q D
Sbjct: 437 QGMLLCASIEGINR--QVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQAD 494
Query: 153 LKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHI 188
K + +WK T + ++ KS G+I
Sbjct: 495 FKISEECIAQWKQTNFMT---KLGSISCKSLKGGNI 527
>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2
SV=3
Length = 528
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 4/118 (3%)
Query: 49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
++ +GE + R +VSGL ++ +L + VVV+CNLKP K RG+ SQGM+LCAS V
Sbjct: 391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCAS--VEGV 448
Query: 109 TR-VEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWK 164
+R VE + PP G+RVF+ G PD+ L PK+ V+ K+Q D K + +WK
Sbjct: 449 SRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWK 506
>sp|P54577|SYYC_HUMAN Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1
SV=4
Length = 528
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
Query: 38 TIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
T+E+ + L ++ +GE + R +VSGL ++ +L + VVV+CNLKP K RG+ S
Sbjct: 377 TVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVES 436
Query: 95 QGMILCAS-ETYNNVTRVEVVRPPENCTAGQRVFIHN-RTGIPDKMLHPKEMVWPKIQVD 152
QGM+LCAS E N +VE + PP G+ VF+ G PD+ L PK+ V+ K+Q D
Sbjct: 437 QGMLLCASIEGINR--QVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQAD 494
Query: 153 LKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHI 188
K + +WK T + ++ KS G+I
Sbjct: 495 FKISEECIAQWKQTNFMT---KLGSISCKSLKGGNI 527
>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana
GN=At4g13780 PE=2 SV=1
Length = 797
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
Query: 49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
+ +G G+ R +VSGL Y+ ++ N V V+CNLKPAK R I+SQ M+L AS + +
Sbjct: 662 EIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSS--DG 719
Query: 109 TRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
++VE+V PP+ G+RV G PD +L+PK+ VW + VDL + +N +K
Sbjct: 720 SKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPF 779
Query: 169 ETVNAQRAAVDLKSDDNGHIR 189
T + S NG IR
Sbjct: 780 TT---SAGVCKVSSISNGTIR 797
>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=mrs-1 PE=2 SV=1
Length = 917
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
++ +GE R +VSGL ++ Q+ N VVV+CNLKPAK RG+ S+ M++CAS +
Sbjct: 783 QIDVGESAPRTVVSGLVRHVPLDQMQNRLVVVLCNLKPAKMRGVESRAMVMCAS----SP 838
Query: 109 TRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRL 168
+VE++ P + G V T PD+ L+PK+ +W + DLK G WKG L
Sbjct: 839 DKVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGFAEWKGQPL 898
>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica
GN=Os06g0508700 PE=2 SV=2
Length = 801
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 49 RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNV 108
+ +GE R +VSGL ++ ++ N V V+CNLKP RGI S M+L AS +
Sbjct: 666 EIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASN--EDH 723
Query: 109 TRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDNGHI 161
T+VE+V PPE+ G+RV +G P+ L+ K W K+ DL S NG +
Sbjct: 724 TKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHS--NGEL 774
>sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ARC1 PE=1 SV=2
Length = 376
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 58 RLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPP 117
R + SGL + + VVVVCNLKP RGI S M+LC S N +VE V PP
Sbjct: 242 RTVCSGLVKHFPLDAMQERYVVVVCNLKPVNMRGIKSTAMVLCGS----NDDKVEFVEPP 297
Query: 118 ENCTAGQRVFIHNR-TGIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKGHRLET------ 170
++ AG +VF P K L+PK+ +W +Q ++D + +K +
Sbjct: 298 KDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQPHFTTNDGLEVIFKDEEEKDHPVRKL 357
Query: 171 VNAQRAAVDLKSDDNGHIR 189
NA+ + + S N +R
Sbjct: 358 TNAKGESFKVASIANAQVR 376
>sp|B7J2F0|SYM_BORBZ Methionine--tRNA ligase OS=Borrelia burgdorferi (strain ZS7)
GN=metG PE=3 SV=1
Length = 734
Score = 70.9 bits (172), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 17/149 (11%)
Query: 35 QMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRG 91
+++ IER E L +L G +D+ IVSGL Y T +L +++V NLKPAKFRG
Sbjct: 580 KINKIERNPEAKNLFILKLDDGTNKDKQIVSGLEGYYTEEELLGKHIIIVDNLKPAKFRG 639
Query: 92 ILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVW-PKIQ 150
I S+GM++ A + N + V +N AG+R+ + N K++ PKI
Sbjct: 640 IKSEGMLIAAEDKNKNFKVIIVEDSIQNPIAGERIILENDQN--------KDLACPPKID 691
Query: 151 VD--LKSD---DNGHIRWKGHRLETVNAQ 174
++ LK++ +NG ++ G L N++
Sbjct: 692 INKFLKANIVAENGELKINGINLILENSK 720
>sp|Q9P6K7|YLF4_SCHPO Uncharacterized tRNA-binding protein C30C2.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC30C2.04 PE=4 SV=1
Length = 450
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 58 RLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPP 117
R + SGL Y+ Q+ V+VV NLKP R + SQ M+ CAS +V VE V PP
Sbjct: 315 RTVCSGLVKYIPLEQMQQRKVIVVANLKPVNMRSVKSQAMVFCASSPDKSV--VEFVLPP 372
Query: 118 ENCTAGQRV-FIHNRTGIPDKMLHPKEMVWPKIQVDLKSDDN 158
EN G R+ F T P+ L+PK +W IQ S ++
Sbjct: 373 ENAEIGDRLTFEGFDTEEPEAQLNPKRKIWEAIQPGFTSGED 414
>sp|Q44951|SYM_BORBU Methionine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210
/ B31 / CIP 102532 / DSM 4680) GN=metG PE=3 SV=2
Length = 734
Score = 70.9 bits (172), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 17/149 (11%)
Query: 35 QMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRG 91
+++ IER E L +L G +D+ IVSGL Y T +L +++V NLKPAKFRG
Sbjct: 580 KINKIERNPEAKNLFILKLDDGTNKDKQIVSGLEGYYTEEELLGKHIIIVDNLKPAKFRG 639
Query: 92 ILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVW-PKIQ 150
I S+GM++ A + N + V +N AG+R+ + N K++ PKI
Sbjct: 640 IKSEGMLIAAEDKNKNFKVIIVEDSIQNPIAGERIILENDQN--------KDLACPPKID 691
Query: 151 VD--LKSD---DNGHIRWKGHRLETVNAQ 174
++ LK++ +NG ++ G L N++
Sbjct: 692 INKFLKANIVAENGELKINGINLILENSK 720
>sp|Q0SMS1|SYM_BORAP Methionine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=metG
PE=3 SV=1
Length = 724
Score = 67.8 bits (164), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 35 QMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRG 91
+++ IER E L +L G +D+ IVS L Y T +L +++V NLKPAKFRG
Sbjct: 570 KINKIERNPEAKNLFILKLDDGTNKDKQIVSSLEGYYTEEELLGKHIIIVDNLKPAKFRG 629
Query: 92 ILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHN 130
I S+GM++ A + N + V +N AG+R+ + N
Sbjct: 630 IKSEGMLIAAEDKNKNFKIIIVEDSIKNPIAGERIILEN 668
>sp|B5RME0|SYM_BORDL Methionine--tRNA ligase OS=Borrelia duttonii (strain Ly) GN=metG
PE=3 SV=1
Length = 726
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
Query: 30 CDVDAQMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKP 86
C ++ TI+R + KL +L G + + IVS +A++ T +L +++V NLKP
Sbjct: 567 CLKTVKIKTIDRNPDAEKLFILKLDDGTPEGKQIVSSIADHYTEEELIGKHIIIVDNLKP 626
Query: 87 AKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVW 146
AKFRGI S+GM++ + N + V +N G+RV + + TG KE+
Sbjct: 627 AKFRGIRSEGMLIATEDENKNFKIIIVEDFKDNPIPGERVILESDTG--------KELKS 678
Query: 147 P-KIQVD--LKSD---DNGHIRWKGHRL 168
P KI +D L++ +NG ++ G L
Sbjct: 679 PTKINIDKFLQAQIVAENGELKINGINL 706
>sp|B5RPT6|SYM_BORRA Methionine--tRNA ligase OS=Borrelia recurrentis (strain A1) GN=metG
PE=3 SV=1
Length = 726
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
Query: 30 CDVDAQMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKP 86
C ++ TI+R + KL +L G + + IVS +A++ T +L +++V NLKP
Sbjct: 567 CLKTVKIKTIDRNPDAEKLFILKLDDGTPEGKQIVSSIADHYTEEELIGKHIIIVDNLKP 626
Query: 87 AKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVW 146
AKFRGI S+GM++ + N + V +N G+RV + + TG KE+
Sbjct: 627 AKFRGIRSEGMLIATKDENKNFKIIIVEDFKDNPIPGERVILESDTG--------KELKS 678
Query: 147 P-KIQVD--LKSD---DNGHIRWKGHRL 168
P KI +D L++ +NG ++ G L
Sbjct: 679 PTKISIDKFLQAQIVAENGELKINGINL 706
>sp|Q660T5|SYM_BORGA Methionine--tRNA ligase OS=Borrelia garinii (strain PBi) GN=metG
PE=3 SV=1
Length = 724
Score = 63.9 bits (154), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 35 QMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRG 91
+++ IER E L +L G +++ IVS L Y T +L +++V NLKPAKFRG
Sbjct: 570 KINKIERNPEAKNLFILKLDDGTNENKQIVSSLEGYYTEKELLGKHIIIVDNLKPAKFRG 629
Query: 92 ILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHN 130
I S+GM++ A + N + V +N G+R+ + N
Sbjct: 630 IKSEGMLIAAEDKNKNFKIIIVEDSIKNPIPGERIILEN 668
>sp|B2S0T6|SYM_BORHD Methionine--tRNA ligase OS=Borrelia hermsii (strain DAH) GN=metG
PE=3 SV=1
Length = 729
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 35 QMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRG 91
Q+ TIER + KL +L G + IVS LA+Y +L +++V NLKPAKFRG
Sbjct: 575 QVKTIERNPDAEKLFILKLNDGSSDGKQIVSSLADYYKEEELIGKHIIIVDNLKPAKFRG 634
Query: 92 ILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHN 130
I S+GM++ + N + V +N G+R+ + +
Sbjct: 635 IKSEGMLIATEDKDKNFKVIIVEDFKDNPIPGERIILES 673
>sp|A1R019|SYM_BORT9 Methionine--tRNA ligase OS=Borrelia turicatae (strain 91E135)
GN=metG PE=3 SV=1
Length = 726
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 35 QMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRG 91
Q+ TIER + KL +L G + IVS LA+Y +L +++V NLKPAKFRG
Sbjct: 572 QIKTIERNPDAEKLFILKLDDGTPDGKQIVSSLADYYKEEKLIGKHIIIVDNLKPAKFRG 631
Query: 92 ILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQV 151
I S+GM++ + N + V +N G+R+ + + + DK L + KI +
Sbjct: 632 IKSEGMLIATEDENKNFKVIIVEDFKDNPIPGERIILESDS---DKKLK----LPSKISI 684
Query: 152 D--LKSD---DNGHIRWKGHRL 168
D LK+ +NG ++ G L
Sbjct: 685 DKFLKTQIVAENGELKVNGINL 706
>sp|Q58659|SYM_METJA Methionine--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=metG PE=3 SV=1
Length = 651
Score = 60.5 bits (145), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 39 IERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMI 98
I + K+ KL + +G+ + R IVSG+ Y L V+V+CNLKPAK G+LS+GMI
Sbjct: 567 IPKSKKLLKLMVDLGD-EKRQIVSGIKGYYKPEDLVGKKVIVICNLKPAKLCGVLSEGMI 625
Query: 99 LCASETYNNVTRVEVVRPPENCTAGQRV 126
L A + NV+ + V ++ AG +V
Sbjct: 626 LAAEDDEGNVSLLTV---DKDIKAGSKV 650
>sp|P59079|SYM_OCEIH Methionine--tRNA ligase OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=metG PE=3
SV=1
Length = 673
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 27 VEDCDVDAQMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMT-AFQLYNTSVVVVCNLK 85
V+DC +E + K RL G+ DR I+SG+A Y + QL VV+V NLK
Sbjct: 582 VKDCS------KVEGADKLLKFRLDAGDNGDRQILSGIAEYYSEPEQLIGKKVVIVANLK 635
Query: 86 PAKFRGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRV 126
P K RG +SQGMIL A Y+ ++++V P G +
Sbjct: 636 PRKMRGEISQGMILSAE--YDG--KLQIVEAPSEAPNGSSI 672
>sp|Q899D9|SYM_CLOTE Methionine--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=metG PE=3 SV=1
Length = 641
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 55 GQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVV 114
G++R ++SG+A Y +L SVV+V NLKPAK RG LSQGMIL A+ ++ +++ V
Sbjct: 571 GEERQVISGIAQYYKPEELVGKSVVLVANLKPAKLRGELSQGMILAAAT--DDDSKLFTV 628
Query: 115 RPPENCTAGQRV 126
P G +V
Sbjct: 629 SIPGELPTGSQV 640
>sp|P23395|SYM_THET8 Methionine--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=metG PE=1 SV=2
Length = 618
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 48 LRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASE 103
LRL +G ++R +VSG+A + +L VV+V NLKPAK RGI SQGMIL A E
Sbjct: 544 LRLSLG-NEERTVVSGIAKWYRPEELVGKKVVLVANLKPAKLRGIESQGMILAAQE 598
>sp|Q8YAF2|SYM_LISMO Methionine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=metG PE=3 SV=1
Length = 664
Score = 58.5 bits (140), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 27 VEDCD-VD---AQMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVV 79
+ED D +D A++ +++ K+ KL +L +GEG+ R ++SG+A + +L V+
Sbjct: 561 IEDFDKIDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVI 620
Query: 80 VVCNLKPAKFRGILSQGMIL 99
VV NLKP K RG++S+GMIL
Sbjct: 621 VVSNLKPVKLRGLMSEGMIL 640
>sp|Q724N6|SYM_LISMF Methionine--tRNA ligase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=metG PE=3 SV=1
Length = 665
Score = 58.5 bits (140), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 27 VEDCD-VD---AQMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVV 79
+ED D +D A++ +++ K+ KL +L +GEG+ R ++SG+A + +L V+
Sbjct: 562 IEDFDKIDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVI 621
Query: 80 VVCNLKPAKFRGILSQGMIL 99
VV NLKP K RG++S+GMIL
Sbjct: 622 VVSNLKPVKLRGLMSEGMIL 641
>sp|Q92F90|SYM_LISIN Methionine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=metG PE=3 SV=1
Length = 664
Score = 58.5 bits (140), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 7/80 (8%)
Query: 27 VEDCD-VD---AQMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVV 79
+ED D +D A++ +++ K+ KL +L +GEG+ R ++SG+A + +L V+
Sbjct: 561 IEDFDKIDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVI 620
Query: 80 VVCNLKPAKFRGILSQGMIL 99
VV NLKP K RG++S+GMIL
Sbjct: 621 VVSNLKPVKLRGLMSEGMIL 640
>sp|Q8PYJ4|SYM_METMA Methionine--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=metG PE=3 SV=2
Length = 715
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 39 IERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMI 98
+++ K+ ++ + IGE + R +V+G+A+Y T +L SV+V+ NLKPAK G+ S GM+
Sbjct: 630 VKKSKKLLRIEVDIGEEKPRQLVAGMASYYTPEELVGKSVIVLANLKPAKLCGVESNGMM 689
Query: 99 LCASETYNNVTRVEVVRPPENCTAGQRV 126
L A + V + P + +G R+
Sbjct: 690 LAAD---DGGAIVAALMPDKEIKSGSRI 714
>sp|A5UJ98|SYM_METS3 Methionine--tRNA ligase OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=metG PE=3 SV=1
Length = 660
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 35 QMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
+ IE+ + KL++ IG+ + R IV+GLA +L + V VV NL+PAK G LS
Sbjct: 576 EAEKIEKSDKLLKLQVDIGD-ETRQIVAGLAKQYAPEELIDRKVAVVVNLQPAKLFGTLS 634
Query: 95 QGMILCASETYNNVTRVEVVRPPENCTAGQRV 126
+GMIL E+ + P+ C G+R+
Sbjct: 635 EGMILATGES-------AALLSPDECEVGERI 659
>sp|Q8XHG1|SYM_CLOPE Methionine--tRNA ligase OS=Clostridium perfringens (strain 13 /
Type A) GN=metG PE=3 SV=1
Length = 645
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 55 GQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVV 114
G++R ++SG+A Y +L VV+V NLKP K RG LSQGMIL A+ + + + + +V
Sbjct: 576 GEERQVISGIAQYYKPEELVGKYVVLVANLKPVKLRGELSQGMILAAAPS--DDSELLLV 633
Query: 115 RPPENCTAGQ 124
P E T Q
Sbjct: 634 NPGEMLTGSQ 643
>sp|Q73NT9|SYM_TREDE Methionine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=metG PE=3 SV=1
Length = 793
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 34 AQMHTIERQKEEAKL---RLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFR 90
A++ ++ER + KL +L G G++R I+SGL ++ ++ +V++ NLKP K R
Sbjct: 631 AKIISVERHPDADKLYIEKLDDGSGEERTILSGLVPFLKEDEILGKTVIIADNLKPRKMR 690
Query: 91 GILSQGMILCAS 102
GI S+GM+L AS
Sbjct: 691 GIESKGMLLAAS 702
>sp|Q46F18|SYM_METBF Methionine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=metG PE=3 SV=1
Length = 710
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 39 IERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMI 98
+++ K+ ++ + IGE + R +V+GL++Y +L SV+V+ NLKPAK G+ S GM+
Sbjct: 625 VKKSKKLIRIEVDIGEEKTRQLVAGLSSYYAPEELVGKSVIVLANLKPAKLCGVKSNGMM 684
Query: 99 LCASETYNNVTRVEVVRPPENCTAGQRV 126
L A + V+ + P + G R+
Sbjct: 685 LAADDGGEIVS---ALMPDKEIKPGSRI 709
>sp|Q1D8K2|SYM_MYXXD Methionine--tRNA ligase OS=Myxococcus xanthus (strain DK 1622)
GN=metG PE=3 SV=1
Length = 703
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 39 IERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMI 98
+++ + KL + +GEG R IVSG+A L +VVVV NLKP K +GI S+GM+
Sbjct: 619 VQKADKLLKLTVDVGEGSPRTIVSGIAEAFAPEALTGRNVVVVANLKPRKLKGIESRGML 678
Query: 99 LCA 101
L A
Sbjct: 679 LTA 681
>sp|Q9KGK8|SYM_BACHD Methionine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=metG PE=3
SV=1
Length = 660
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 42 QKEEAKLRLQIGEG-QDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILC 100
+K + L++Q+ G + R +VSG+A Y + L V+ V NLKP K RG LSQGMIL
Sbjct: 578 KKADRLLKIQLDLGYEKRQVVSGIAKYYSPSDLIGKKVICVTNLKPVKLRGELSQGMILA 637
Query: 101 ASE 103
SE
Sbjct: 638 GSE 640
>sp|Q8TIU5|SYM_METAC Methionine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=metG PE=3 SV=1
Length = 712
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 36 MHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQ 95
+ +++ ++ ++ + IGE + R +V+G+A+Y T+ +L VVV+ NLKPAK G+ S
Sbjct: 624 VEPVKKSRKLLRVEVDIGEEKPRQLVAGMASYYTSEELVGKYVVVLANLKPAKLCGVESN 683
Query: 96 GMILCASETYNNVTRVEVVRPPENCTAGQRV 126
GM+L A + V + P + G R+
Sbjct: 684 GMMLAAD---DGGAIVAALMPDKEIKPGSRI 711
>sp|Q0W0H2|SYM_UNCMA Methionine--tRNA ligase OS=Uncultured methanogenic archaeon RC-I
GN=metG PE=3 SV=1
Length = 683
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 39 IERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMI 98
I+ K+ K + +GE + R IVSG+A T ++ +V+V+ NLKP K G+ S GMI
Sbjct: 600 IKGSKKLLKNLIDLGEDKPRQIVSGIAEVYTPEEMVGKTVIVIANLKPTKIMGVESNGMI 659
Query: 99 LCASETYNNVTRVEVVRPPENCT 121
L A N T + V +P E T
Sbjct: 660 LAADS--NGATLLTVEKPSEPGT 680
>sp|Q9RUF3|SYM_DEIRA Methionine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=metG PE=3 SV=1
Length = 681
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 39 IERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMI 98
+E+ + KL +++G+ + R +VSG+ + L VV+V NLKPAK RGI SQGMI
Sbjct: 597 VEKADKLLKLTVKLGD-ETRTVVSGIRKWYEPEALVGRKVVLVANLKPAKLRGIESQGMI 655
Query: 99 LCASETYNNVTRV 111
L A + N+ V
Sbjct: 656 LAAEDDAGNLDLV 668
>sp|A7I6H7|SYM_METB6 Methionine--tRNA ligase OS=Methanoregula boonei (strain 6A8)
GN=metG PE=3 SV=1
Length = 662
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 37 HTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQG 96
+I + + KL++ IG G+ R IVSG+A + +L V+V+ NL PAK G+ S G
Sbjct: 579 ESIPKSSKLLKLQVDIG-GETRQIVSGIAAFYKPDELVGKDVIVLTNLAPAKIFGVESNG 637
Query: 97 MILCASETYNNVTRVEVVRP 116
MIL A + + +T ++ V P
Sbjct: 638 MILAAGDAASLLTPLKPVEP 657
>sp|A2SRE2|SYM_METLZ Methionine--tRNA ligase OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=metG PE=3 SV=1
Length = 673
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 48 LRLQIGEGQD-RLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASE 103
LRLQ+ G + R IVSG+A+ T ++ + ++VV NLKPAKFRG S GM+ A E
Sbjct: 599 LRLQVDIGTEVRQIVSGIADVYTPEEMVDKKIIVVVNLKPAKFRGEESNGMLFAAGE 655
>sp|A6UUN1|SYM_META3 Methionine--tRNA ligase OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=metG PE=3 SV=1
Length = 672
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 35 QMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
+ + + K+ KL + IG+ + R +V+G+ + T +L +V+VCNLKPAK G+ S
Sbjct: 586 EAEEVPKSKKLLKLIVDIGD-EKRQVVAGIKGHYTPEELIGKKIVLVCNLKPAKLCGVES 644
Query: 95 QGMILCASETYNNVTRVEVVRPPENCTAGQRV 126
QGM+L A + V ++ P ++ G +
Sbjct: 645 QGMVLAAGD-----EEVALLSPEKDLPVGSTI 671
>sp|P56127|SYM_HELPY Methionine--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=metG PE=3 SV=1
Length = 650
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 35 QMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
+ IE+ + +L++ +GEG+ R I+SG+A L V VV NLKPAK G +S
Sbjct: 562 EAQRIEKSNKLLRLKVDLGEGRLRQIISGIALDYEPESLVGQMVCVVANLKPAKLMGEMS 621
Query: 95 QGMILCASETYNNVTRVEVVRPPENCTAGQRV 126
+GMIL ++ N + ++ P AG +
Sbjct: 622 EGMILAVRDSDN----LALISPTREKIAGSLI 649
>sp|Q88Z97|SYM_LACPL Methionine--tRNA ligase OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=metG PE=3 SV=1
Length = 683
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 34 AQMHTIERQKEEAKL---RLQIGEGQDRLIVSGLAN-YMTAFQLYNTSVVVVCNLKPAKF 89
A++ T+++ K KL RL G+ R I+SG+A Y +L V++V NLKP K
Sbjct: 590 AEVITVQKLKGADKLLQFRLDAGDADHRQILSGIAKWYPEPEELIGKKVIIVGNLKPRKL 649
Query: 90 RGILSQGMILCASETYNNVTRVEVVRPPENCTAGQRV 126
RG +SQGM+L A +V+++ P+N G +
Sbjct: 650 RGEMSQGMLLSAEHD----GQVQLITVPDNMVNGSLI 682
>sp|A4FZL1|SYM_METM5 Methionine--tRNA ligase OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=metG PE=3 SV=1
Length = 663
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 35 QMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
++ + R K+ K+ +G+ + R IVSGL A +L V+++CNLKPAK G+ S
Sbjct: 576 EVEEVPRSKKLYKITADLGD-EKRQIVSGLKGAYEAEELVGKKVIIICNLKPAKLCGVES 634
Query: 95 QGMILCASE 103
QGM+L A +
Sbjct: 635 QGMLLAAED 643
>sp|Q9V011|SYM_PYRAB Methionine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=metG PE=1 SV=1
Length = 722
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 58 RLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPP 117
R +V+GL Y +L N VVVV NL+P K RGI SQGM+L A ++ RV ++ P
Sbjct: 657 RTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAA----DDGERVALLMPD 712
Query: 118 ENCTAGQRV 126
+ G +V
Sbjct: 713 KEVKLGAKV 721
>sp|A6VIW5|SYM_METM7 Methionine--tRNA ligase OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=metG PE=3 SV=1
Length = 663
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 35 QMHTIERQKEEAKLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILS 94
++ + R K+ K+ +G+ + R IVSGL A +L V+++CNLKPAK G+ S
Sbjct: 576 EVEEVPRSKKLYKIIADLGD-EKRQIVSGLKGAYEAEELVGKKVIIICNLKPAKLCGVES 634
Query: 95 QGMILCASE 103
QGM+L A +
Sbjct: 635 QGMLLAAED 643
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,713,448
Number of Sequences: 539616
Number of extensions: 3192037
Number of successful extensions: 6828
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 6543
Number of HSP's gapped (non-prelim): 378
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)