RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2025
(213 letters)
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 90.8 bits (225), Expect = 1e-23
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 5/143 (3%)
Query: 47 KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
++ +GE + R +VSGL ++ +L + VVV+CNLKP K RG+ SQGM+LCAS
Sbjct: 30 VEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIE-G 88
Query: 107 NVTRVEVVRPPENCTAGQRVFIHNRT-GIPDKMLHPKEMVWPKIQVDLKSDDNGHIRWKG 165
+VE + PP G+ VF+ G PD+ L PK+ V+ K+Q D K + +WK
Sbjct: 89 INRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQ 148
Query: 166 HRLETVNAQRAAVDLKSDDNGHI 188
T + ++ KS G+I
Sbjct: 149 TNFMT---KLGSISCKSLKGGNI 168
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 88.1 bits (218), Expect = 9e-23
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 9/159 (5%)
Query: 34 AQMHTIERQKEEAKLRL---QIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFR 90
+ T + + L + +GE R +VSGL N++ Q+ N V+++CNLKPAK R
Sbjct: 11 GCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMR 70
Query: 91 GILSQGMILCASETYNNVTRVEVVRPPENCTAGQRVFIHNRTGIPDKMLHPKEMVWPKIQ 150
G+LSQ M++CAS ++E++ PP G R+ G PDK L+PK+ +W +IQ
Sbjct: 71 GVLSQAMVMCASSP----EKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQ 126
Query: 151 VDLKSDDNGHIRWKGHRLETVNAQRAAVDLKSDDNGHIR 189
DL ++D +KG E + ++ N I+
Sbjct: 127 PDLHTNDECVATYKGVPFEV--KGKGVCRAQTMSNSGIK 163
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Escherichia coli [TaxId: 562]}
Length = 111
Score = 59.2 bits (143), Expect = 3e-12
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 47 KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
+++ +G+ + V+ L Y + +L +VVV+CNL+ AK RG S+ M+LCA
Sbjct: 33 IVQVDVGQKTLQ-TVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDG 91
Query: 107 NVTRVEVVRPPENCTAGQRV 126
+ ++ P AG RV
Sbjct: 92 S--ESVLLTPERMMPAGVRV 109
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Length = 107
Score = 53.0 bits (127), Expect = 5e-10
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 47 KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
KL L +G+ + +V+G+A Y T +L +V+V NLKP K GI SQGMIL AS+ N
Sbjct: 32 KLTLSLGDEERT-VVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAASDGEN 90
Query: 107 NVTRVEVVRPPENCTAGQRV 126
+ V+ P + G ++
Sbjct: 91 ----LSVIVPDRDVKEGAKL 106
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 107
Score = 52.2 bits (125), Expect = 8e-10
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 47 KLRLQIGEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYN 106
+++ +G+ + R +V+GL Y +L N VVVV NL+P K RGI SQGM+L A +
Sbjct: 32 VVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAADDG-- 88
Query: 107 NVTRVEVVRPPENCTAGQRV 126
RV ++ P + G +V
Sbjct: 89 --ERVALLMPDKEVKLGAKV 106
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
[TaxId: 274]}
Length = 109
Score = 50.8 bits (121), Expect = 3e-09
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 53 GEGQDRLIVSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVE 112
G + + + L VV NL + G LS+ ++L + V
Sbjct: 38 GPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGR---VV 94
Query: 113 VVRPPENCTAGQRVF 127
++ P G +VF
Sbjct: 95 LLAPDREVPLGGKVF 109
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus
thermophilus [TaxId: 274]}
Length = 113
Score = 30.3 bits (68), Expect = 0.054
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 39 IERQKEEAK--LRLQIGEGQDRLIVSGLANYMTAFQLY-----NTSVVVVCNLKPAKFRG 91
+E RL + G+ +VSG N + + + +G
Sbjct: 13 LEAHPIPGTRLKRLVLDAGRTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQG 72
Query: 92 ILSQGMILCASE 103
+ S GM L E
Sbjct: 73 VRSFGMALSPRE 84
>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic
flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Length = 399
Score = 27.4 bits (60), Expect = 1.3
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 4/112 (3%)
Query: 61 VSGLANYMTAFQLYNTSVVVVCNLKPAKFRGILSQGMILCASETYNNVTRVEVVRPPENC 120
S + +++ + + S M E ++RV P N
Sbjct: 223 RSAFGCSEPVALEWEGKLIINTRVDYRRRLVYESSDMGNTWLEAVGTLSRVWGPSPKSNQ 282
Query: 121 TAGQRVFIHNRTGIPDKML--HP--KEMVWPKIQVDLKSDDNGHIRWKGHRL 168
Q F ML HP + W + +++L DN I G
Sbjct: 283 PGSQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLWLTDNQRIYNVGQVS 334
>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 25.8 bits (57), Expect = 1.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 106 NNVTRVEVVRPPENCTAGQRVFIHNRTGIP 135
N+V + + R EN + Q V +++ IP
Sbjct: 17 NHVLKSGLGRITENTSQYQGVVVYSMADIP 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.431
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 801,585
Number of extensions: 34875
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 11
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)