BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2029
(138 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|198437907|ref|XP_002120889.1| PREDICTED: similar to DNA helicase HEL308 [Ciona intestinalis]
Length = 1014
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + KCL + + +N + S+PTSGGKTLV EILI +EL K+K A+F+LP++++V E
Sbjct: 257 YDWQHKCLTLDGVKEGRNLIYSLPTSGGKTLVAEILIFRELLCKKKDAVFVLPFVAIVQE 316
Query: 119 KYQSLAKAAEEFKFYLE 135
K QSLA+ A E F +E
Sbjct: 317 KIQSLAQFAVELGFLVE 333
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 48/63 (76%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ +N + S+PTSGGKTLV EILI +EL K+K A+F+LP++++V EK QSLA+ A E F
Sbjct: 271 EGRNLIYSLPTSGGKTLVAEILIFRELLCKKKDAVFVLPFVAIVQEKIQSLAQFAVELGF 330
Query: 63 YLE 65
+E
Sbjct: 331 LVE 333
>gi|449662379|ref|XP_002160420.2| PREDICTED: helicase POLQ-like [Hydra magnipapillata]
Length = 886
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 50/63 (79%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV E+LIMKE+ ++K+AIF+LPY+S+V EK + L+ A EF F
Sbjct: 175 KRKNLIYSLPTSGGKTLVAELLIMKEILKQKKNAIFVLPYVSIVQEKVRELSPFAVEFNF 234
Query: 63 YLE 65
++E
Sbjct: 235 HVE 237
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 50/63 (79%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV E+LIMKE+ ++K+AIF+LPY+S+V EK + L+ A EF F
Sbjct: 175 KRKNLIYSLPTSGGKTLVAELLIMKEILKQKKNAIFVLPYVSIVQEKVRELSPFAVEFNF 234
Query: 133 YLE 135
++E
Sbjct: 235 HVE 237
>gi|443734649|gb|ELU18559.1| hypothetical protein CAPTEDRAFT_161173 [Capitella teleta]
Length = 820
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 34 KSAIFILPYISL---VHEKYQSLAKAAEEFKFYLEGKCL-EMIQNKNCVLSIPTSGGKTL 89
K++ F+ P+ L V E ++SL E + + E CL E+ Q KN + S+PTSGGKTL
Sbjct: 15 KASDFVQPFGGLPVKVLELFESLRGIKELYDWQKECLCLPEVRQGKNLIYSLPTSGGKTL 74
Query: 90 VGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
V E+LI ++L I++ AI ILP++++V EK + + A E F +E
Sbjct: 75 VAEVLIFRQLLIRKLDAILILPFVAIVQEKVRIIGAFASELDFVVE 120
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV E+LI ++L I++ AI ILP++++V EK + + A E F
Sbjct: 58 QGKNLIYSLPTSGGKTLVAEVLIFRQLLIRKLDAILILPFVAIVQEKVRIIGAFASELDF 117
Query: 63 YLE 65
+E
Sbjct: 118 VVE 120
>gi|256074218|ref|XP_002573423.1| DNA polymerase theta [Schistosoma mansoni]
Length = 923
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
V E + L + + + +E L + N N V S+PTSGGKTLV EIL++KEL I K
Sbjct: 26 VKELFHELRGVTKLYDWQVECLNLTAVANGSNLVYSLPTSGGKTLVAEILMLKELLIYNK 85
Query: 105 SAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
S +FILP++S+V EK +SL E F++E
Sbjct: 86 SVLFILPFVSIVQEKVRSLTPMGLELGFWVE 116
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S+PTSGGKTLV EIL++KEL I KS +FILP++S+V EK +SL E F++E
Sbjct: 57 NLVYSLPTSGGKTLVAEILMLKELLIYNKSVLFILPFVSIVQEKVRSLTPMGLELGFWVE 116
Query: 66 ------GKCLEMIQNKN-CVLSIPTSGGKTLVGEILIMKEL 99
G+ + +N + VL G T+V ++ K L
Sbjct: 117 EYAGSRGRIPPVKRNGSYSVLMATIEKGHTIVNSLIDTKTL 157
>gi|350645162|emb|CCD60104.1| DNA polymerase theta, putative [Schistosoma mansoni]
Length = 923
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
V E + L + + + +E L + N N V S+PTSGGKTLV EIL++KEL I K
Sbjct: 26 VKELFHELRGVTKLYDWQVECLNLTAVANGSNLVYSLPTSGGKTLVAEILMLKELLIYNK 85
Query: 105 SAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
S +FILP++S+V EK +SL E F++E
Sbjct: 86 SVLFILPFVSIVQEKVRSLTPMGLELGFWVE 116
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S+PTSGGKTLV EIL++KEL I KS +FILP++S+V EK +SL E F++E
Sbjct: 57 NLVYSLPTSGGKTLVAEILMLKELLIYNKSVLFILPFVSIVQEKVRSLTPMGLELGFWVE 116
Query: 66 ------GKCLEMIQNKN-CVLSIPTSGGKTLVGEILIMKEL 99
G+ + +N + VL G T+V ++ K L
Sbjct: 117 EYAGSRGRIPPVKRNGSYSVLMATIEKGHTIVNSLIDTKTL 157
>gi|47210458|emb|CAF94327.1| unnamed protein product [Tetraodon nigroviridis]
Length = 969
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 69 LEMIQ-NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
LE IQ KN + S+PTSGGKTLV EILI++EL ++K +FILPYISLV EK + LA
Sbjct: 227 LECIQARKNLIYSLPTSGGKTLVAEILILRELLCRRKDCLFILPYISLVQEKVRGLASFG 286
Query: 128 EEFKFYLE 135
E F +E
Sbjct: 287 LELDFMVE 294
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
KN + S+PTSGGKTLV EILI++EL ++K +FILPYISLV EK + LA E F +
Sbjct: 234 KNLIYSLPTSGGKTLVAEILILRELLCRRKDCLFILPYISLVQEKVRGLASFGLELDFMV 293
Query: 65 E 65
E
Sbjct: 294 E 294
>gi|348532301|ref|XP_003453645.1| PREDICTED: helicase POLQ [Oreochromis niloticus]
Length = 993
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV EILI++EL ++K +FILPYISLV EK + LA E F
Sbjct: 260 QRKNLIYSLPTSGGKTLVAEILILRELLCRRKDCLFILPYISLVQEKVRGLASFGLELDF 319
Query: 63 YLE 65
+E
Sbjct: 320 MVE 322
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q KN + S+PTSGGKTLV EILI++EL ++K +FILPYISLV EK + LA E F
Sbjct: 260 QRKNLIYSLPTSGGKTLVAEILILRELLCRRKDCLFILPYISLVQEKVRGLASFGLELDF 319
Query: 133 YLE 135
+E
Sbjct: 320 MVE 322
>gi|193659627|ref|XP_001943294.1| PREDICTED: helicase POLQ-like isoform 1 [Acyrthosiphon pisum]
gi|328698000|ref|XP_003240510.1| PREDICTED: helicase POLQ-like isoform 2 [Acyrthosiphon pisum]
Length = 825
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 27 KELKIKQKSAIFILPY-ISLVHEKYQSLAKAAEEFKFYLEGKCLEMI-QNKNCVLSIPTS 84
K L + S F LP+ + + +K++ + + + + +E L+ I + KN + ++PTS
Sbjct: 27 KRLHVDGDSDFFGLPHKVKHLFKKHKGITQL---YDWQIECLNLDAIKRRKNLIYALPTS 83
Query: 85 GGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
GGKTLV EIL++KEL + +++ IFILPY++LV EK QSL +F +E
Sbjct: 84 GGKTLVAEILMLKELIVYERNVIFILPYVALVQEKVQSLCPFGLNLEFNVE 134
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + ++PTSGGKTLV EIL++KEL + +++ IFILPY++LV EK QSL +F
Sbjct: 72 RRKNLIYALPTSGGKTLVAEILMLKELIVYERNVIFILPYVALVQEKVQSLCPFGLNLEF 131
Query: 63 YLE 65
+E
Sbjct: 132 NVE 134
>gi|410904054|ref|XP_003965508.1| PREDICTED: helicase POLQ-like [Takifugu rubripes]
Length = 1016
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 69 LEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
LE +Q KN + S+PTSGGKTLV EILI++EL ++K +FILPYI+LV EK + LA
Sbjct: 274 LECVQERKNLIYSLPTSGGKTLVAEILILRELLCRRKDCLFILPYITLVQEKVRGLASFG 333
Query: 128 EEFKFYLE 135
E F +E
Sbjct: 334 LELDFMVE 341
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EILI++EL ++K +FILPYI+LV EK + LA E F
Sbjct: 279 ERKNLIYSLPTSGGKTLVAEILILRELLCRRKDCLFILPYITLVQEKVRGLASFGLELDF 338
Query: 63 YLE 65
+E
Sbjct: 339 MVE 341
>gi|432953220|ref|XP_004085307.1| PREDICTED: helicase POLQ-like, partial [Oryzias latipes]
Length = 932
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q +N + S+PTSGGKTLV EILI++EL ++K + +LPYISLV EK + LA E F
Sbjct: 223 QRRNLIYSLPTSGGKTLVAEILILRELLCRRKDCLLVLPYISLVQEKVRGLASLGLELDF 282
Query: 63 YLE 65
+E
Sbjct: 283 LVE 285
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q +N + S+PTSGGKTLV EILI++EL ++K + +LPYISLV EK + LA E F
Sbjct: 223 QRRNLIYSLPTSGGKTLVAEILILRELLCRRKDCLLVLPYISLVQEKVRGLASLGLELDF 282
Query: 133 YLE 135
+E
Sbjct: 283 LVE 285
>gi|189533893|ref|XP_691411.3| PREDICTED: helicase, POLQ-like [Danio rerio]
Length = 1010
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q +N + S+PTSGGKTLV EILI KEL ++K A+ ILPYISLV EK + L+ E F
Sbjct: 272 QRRNLIYSLPTSGGKTLVAEILIFKELLCRKKDALLILPYISLVQEKVRGLSSFGIELDF 331
Query: 63 YLE 65
+E
Sbjct: 332 LVE 334
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q +N + S+PTSGGKTLV EILI KEL ++K A+ ILPYISLV EK + L+ E F
Sbjct: 272 QRRNLIYSLPTSGGKTLVAEILIFKELLCRKKDALLILPYISLVQEKVRGLSSFGIELDF 331
Query: 133 YLE 135
+E
Sbjct: 332 LVE 334
>gi|260817896|ref|XP_002603821.1| hypothetical protein BRAFLDRAFT_124688 [Branchiostoma floridae]
gi|229289144|gb|EEN59832.1| hypothetical protein BRAFLDRAFT_124688 [Branchiostoma floridae]
Length = 1215
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 69 LEMIQNK-NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
L+ IQN+ N + S+PTSGGKTLV EILIMKE+ ++K + +LP++S+V EK +++A A
Sbjct: 331 LDTIQNRGNLIYSLPTSGGKTLVAEILIMKEILCRKKDTLLVLPFVSIVQEKVRTIAPFA 390
Query: 128 EEFKFYLE 135
+ F +E
Sbjct: 391 ADLDFIVE 398
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 2 VQNK-NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+QN+ N + S+PTSGGKTLV EILIMKE+ ++K + +LP++S+V EK +++A A +
Sbjct: 334 IQNRGNLIYSLPTSGGKTLVAEILIMKEILCRKKDTLLVLPFVSIVQEKVRTIAPFAADL 393
Query: 61 KFYLE 65
F +E
Sbjct: 394 DFIVE 398
>gi|340382571|ref|XP_003389792.1| PREDICTED: helicase POLQ [Amphimedon queenslandica]
Length = 892
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + KCL + N + S+PTSGGKTLV EILI++++ +K K +FILPY+S+V E
Sbjct: 139 YDWQNKCLSLPGVAAGNNLIYSLPTSGGKTLVAEILILQQIMLKYKDVLFILPYVSIVQE 198
Query: 119 KYQSLAKAAEEFKFYLE 135
K + L AEE F +E
Sbjct: 199 KVRELLPFAEELSFAVE 215
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 44/61 (72%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
N + S+PTSGGKTLV EILI++++ +K K +FILPY+S+V EK + L AEE F +
Sbjct: 155 NNLIYSLPTSGGKTLVAEILILQQIMLKYKDVLFILPYVSIVQEKVRELLPFAEELSFAV 214
Query: 65 E 65
E
Sbjct: 215 E 215
>gi|308481777|ref|XP_003103093.1| CRE-HEL-308 protein [Caenorhabditis remanei]
gi|308260469|gb|EFP04422.1| CRE-HEL-308 protein [Caenorhabditis remanei]
Length = 903
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 61 KFY-LEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
KFY + +CL ++ +NC+LS+PT GKTL+ E+L+++E +K+++AI +LPY+++V
Sbjct: 165 KFYDWQQECLSDTRLLNGENCILSLPTGAGKTLIAEVLMLREAVVKKRNAILVLPYVAIV 224
Query: 117 HEKYQSLAKAAEEFKFYLE 135
EK SLA + F +E
Sbjct: 225 QEKISSLAPFEDAFGINIE 243
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 47/65 (72%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ +NC+LS+PT GKTL+ E+L+++E +K+++AI +LPY+++V EK SLA + F
Sbjct: 179 LLNGENCILSLPTGAGKTLIAEVLMLREAVVKKRNAILVLPYVAIVQEKISSLAPFEDAF 238
Query: 61 KFYLE 65
+E
Sbjct: 239 GINIE 243
>gi|358333105|dbj|GAA27633.2| helicase POLQ-like [Clonorchis sinensis]
Length = 848
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S+PTSGGKTLV EIL+++EL +++K+ +FILP++S+V EK +SL E F++E
Sbjct: 72 NLVYSLPTSGGKTLVAEILMLQELLLRKKNVLFILPFVSIVQEKVRSLTTMGLELGFWVE 131
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
N V S+PTSGGKTLV EIL+++EL +++K+ +FILP++S+V EK +SL E F++E
Sbjct: 72 NLVYSLPTSGGKTLVAEILMLQELLLRKKNVLFILPFVSIVQEKVRSLTTMGLELGFWVE 131
>gi|307195274|gb|EFN77230.1| ATP-dependent DNA helicase HEL308 [Harpegnathos saltator]
Length = 1054
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Query: 62 FYLEGKCLEMI--QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ + +CL++ KN + ++PTSGGKTLV EIL+++E+ +K+AIFILPY++LV EK
Sbjct: 266 YEWQDECLKLAIKTRKNLIYALPTSGGKTLVAEILMLREIICNKKNAIFILPYVALVQEK 325
Query: 120 YQSLAKAAEEFKFYLE 135
QS+A A + F +E
Sbjct: 326 VQSMAILALKLGFLVE 341
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 47/61 (77%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
KN + ++PTSGGKTLV EIL+++E+ +K+AIFILPY++LV EK QS+A A + F +
Sbjct: 281 KNLIYALPTSGGKTLVAEILMLREIICNKKNAIFILPYVALVQEKVQSMAILALKLGFLV 340
Query: 65 E 65
E
Sbjct: 341 E 341
>gi|326429085|gb|EGD74655.1| hypothetical protein PTSG_06020 [Salpingoeca sp. ATCC 50818]
Length = 1156
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N +L++PTSGGKTLV E+L +K + ++QK AI +LPY+++V EK +L AE+ F+LE
Sbjct: 233 NLLLTLPTSGGKTLVAEVLALKTMLLQQKDAILVLPYVAIVQEKVAALEPLAEQIGFHLE 292
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
N +L++PTSGGKTLV E+L +K + ++QK AI +LPY+++V EK +L AE+ F+LE
Sbjct: 233 NLLLTLPTSGGKTLVAEVLALKTMLLQQKDAILVLPYVAIVQEKVAALEPLAEQIGFHLE 292
>gi|268575988|ref|XP_002642974.1| Hypothetical protein CBG15258 [Caenorhabditis briggsae]
Length = 898
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 48 EKYQSLAKAAEEFKFY-LEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
EKY+ + K KFY + +CL ++ +NC+LS+PT GKTL+ EIL+++E + +
Sbjct: 152 EKYKRIKKLE---KFYDWQQECLSDKRLLNGENCILSLPTGAGKTLIAEILMLREAIVHK 208
Query: 104 KSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
++AI +LPY+++V EK SLA + F +E
Sbjct: 209 RNAILVLPYVAIVQEKISSLAPFEDAFGINIE 240
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ +NC+LS+PT GKTL+ EIL+++E + +++AI +LPY+++V EK SLA + F
Sbjct: 176 LLNGENCILSLPTGAGKTLIAEILMLREAIVHKRNAILVLPYVAIVQEKISSLAPFEDAF 235
Query: 61 KFYLE 65
+E
Sbjct: 236 GINIE 240
>gi|395542204|ref|XP_003773024.1| PREDICTED: helicase POLQ-like [Sarcophilus harrisii]
Length = 1047
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV EIL+++EL +QK+ + ILPY+++V EK SL+ E F
Sbjct: 293 QRKNLIYSLPTSGGKTLVAEILMLQELLCRQKNVLMILPYVAIVQEKISSLSNFGIELGF 352
Query: 63 YLEGKCLEMIQNKNCVLSIPTSGGKTL 89
++E E +K V I G K+L
Sbjct: 353 FVE----EYAGSKGRVPPIKRRGKKSL 375
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
CL+ Q KN + S+PTSGGKTLV EIL+++EL +QK+ + ILPY+++V EK SL+
Sbjct: 290 CLQ--QRKNLIYSLPTSGGKTLVAEILMLQELLCRQKNVLMILPYVAIVQEKISSLSNFG 347
Query: 128 EEFKFYLE 135
E F++E
Sbjct: 348 IELGFFVE 355
>gi|405969237|gb|EKC34220.1| Helicase POLQ-like protein [Crassostrea gigas]
Length = 1123
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 65 EGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
+ +CL++ + N V S+PTSGGKTLV E+LI+KEL K++ A+ ILP++S+V EK +
Sbjct: 341 QDRCLKLPSLQKGGNLVYSLPTSGGKTLVAEVLILKELLCKKRDALMILPFVSIVQEKVK 400
Query: 122 SLAKAAEEFKFYLE 135
LA+ A E F +E
Sbjct: 401 GLAQLAVELDFLVE 414
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S+PTSGGKTLV E+LI+KEL K++ A+ ILP++S+V EK + LA+ A E F +E
Sbjct: 355 NLVYSLPTSGGKTLVAEVLILKELLCKKRDALMILPFVSIVQEKVKGLAQLAVELDFLVE 414
>gi|345494548|ref|XP_003427318.1| PREDICTED: helicase POLQ-like isoform 1 [Nasonia vitripennis]
Length = 975
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL M + KN + ++PTSGGKTLV EIL+++E+ +K+AIF+LP+++LV E
Sbjct: 191 YDWQDECLNMKALNERKNLIYALPTSGGKTLVAEILMLREVICNKKNAIFVLPFVALVQE 250
Query: 119 KYQSLAKAAEEFKFYLE 135
K QSL A F +E
Sbjct: 251 KIQSLTPFALALNFLVE 267
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + ++PTSGGKTLV EIL+++E+ +K+AIF+LP+++LV EK QSL A F
Sbjct: 205 ERKNLIYALPTSGGKTLVAEILMLREVICNKKNAIFVLPFVALVQEKIQSLTPFALALNF 264
Query: 63 YLE 65
+E
Sbjct: 265 LVE 267
>gi|383859979|ref|XP_003705469.1| PREDICTED: helicase POLQ-like [Megachile rotundata]
Length = 1014
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+++ E L+ ++N KN + ++PTSGGKTLV EIL++KE+ +++AIFILP++++V E
Sbjct: 228 YEWQDECLSLDAVKNRKNLIYALPTSGGKTLVAEILMLKEVICNKQNAIFILPFVAIVQE 287
Query: 119 KYQSLAKAAEEFKFYLE 135
K Q++A A E F +E
Sbjct: 288 KVQAMAPFALELDFLIE 304
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 47/61 (77%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
KN + ++PTSGGKTLV EIL++KE+ +++AIFILP++++V EK Q++A A E F +
Sbjct: 244 KNLIYALPTSGGKTLVAEILMLKEVICNKQNAIFILPFVAIVQEKVQAMAPFALELDFLI 303
Query: 65 E 65
E
Sbjct: 304 E 304
>gi|328778032|ref|XP_003249435.1| PREDICTED: helicase POLQ-like [Apis mellifera]
Length = 771
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 69 LEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
L+ I+N KN + ++PTSGGKTLV EIL+++EL +K+AIFILP++++V EK Q++ A
Sbjct: 122 LDAIKNRKNLIYALPTSGGKTLVAEILMLQELTCNKKNAIFILPFVAIVQEKIQAMTPFA 181
Query: 128 EEFKFYLE 135
E F +E
Sbjct: 182 LELGFLVE 189
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 46/61 (75%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
KN + ++PTSGGKTLV EIL+++EL +K+AIFILP++++V EK Q++ A E F +
Sbjct: 129 KNLIYALPTSGGKTLVAEILMLQELTCNKKNAIFILPFVAIVQEKIQAMTPFALELGFLV 188
Query: 65 E 65
E
Sbjct: 189 E 189
>gi|194750315|ref|XP_001957573.1| GF23962 [Drosophila ananassae]
gi|190624855|gb|EDV40379.1| GF23962 [Drosophila ananassae]
Length = 1049
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V EK +++ A + F
Sbjct: 280 QRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAMSPFAIDLDF 339
Query: 63 YLE------GKC 68
+E GKC
Sbjct: 340 LVEEYTAGKGKC 351
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V E
Sbjct: 266 YEWQDECLNLPAIKQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQE 325
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ A + F +E
Sbjct: 326 KVSAMSPFAIDLDFLVE 342
>gi|149046779|gb|EDL99553.1| rCG37823, isoform CRA_b [Rattus norvegicus]
Length = 755
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 306 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVAIVQEKISSLSSFGIELGF 365
Query: 63 YLE 65
++E
Sbjct: 366 FVE 368
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 306 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVAIVQEKISSLSSFGIELGF 365
Query: 133 YLE 135
++E
Sbjct: 366 FVE 368
>gi|195492753|ref|XP_002094126.1| GE21661 [Drosophila yakuba]
gi|194180227|gb|EDW93838.1| GE21661 [Drosophila yakuba]
Length = 1052
Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V EK +++ A + F
Sbjct: 280 QRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAMSPFAIDLDF 339
Query: 63 YLE------GKC 68
+E GKC
Sbjct: 340 IVEEYTAGKGKC 351
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V E
Sbjct: 266 YEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQE 325
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ A + F +E
Sbjct: 326 KVSAMSPFAIDLDFIVE 342
>gi|345494550|ref|XP_003427319.1| PREDICTED: helicase POLQ-like isoform 2 [Nasonia vitripennis]
Length = 848
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL M + KN + ++PTSGGKTLV EIL+++E+ +K+AIF+LP+++LV E
Sbjct: 191 YDWQDECLNMKALNERKNLIYALPTSGGKTLVAEILMLREVICNKKNAIFVLPFVALVQE 250
Query: 119 KYQSLAKAAEEFKFYLE 135
K QSL A F +E
Sbjct: 251 KIQSLTPFALALNFLVE 267
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + ++PTSGGKTLV EIL+++E+ +K+AIF+LP+++LV EK QSL A F
Sbjct: 205 ERKNLIYALPTSGGKTLVAEILMLREVICNKKNAIFVLPFVALVQEKIQSLTPFALALNF 264
Query: 63 YLE 65
+E
Sbjct: 265 LVE 267
>gi|24660651|ref|NP_648178.1| mutagen-sensitive 301 [Drosophila melanogaster]
gi|7295156|gb|AAF50481.1| mutagen-sensitive 301 [Drosophila melanogaster]
gi|108385045|gb|AAR82756.2| RE48845p [Drosophila melanogaster]
Length = 1051
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V EK +++ A + F
Sbjct: 279 QRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAMSPFAIDLDF 338
Query: 63 YLE------GKC 68
+E GKC
Sbjct: 339 IVEEYTAGKGKC 350
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V E
Sbjct: 265 YEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQE 324
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ A + F +E
Sbjct: 325 KVSAMSPFAIDLDFIVE 341
>gi|194865309|ref|XP_001971365.1| GG14474 [Drosophila erecta]
gi|190653148|gb|EDV50391.1| GG14474 [Drosophila erecta]
Length = 1052
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V EK +++ A + F
Sbjct: 280 QRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAMSPFAIDLDF 339
Query: 63 YLE------GKC 68
+E GKC
Sbjct: 340 IVEEYTAGKGKC 351
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V E
Sbjct: 266 YEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQE 325
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ A + F +E
Sbjct: 326 KVSAMSPFAIDLDFIVE 342
>gi|195325899|ref|XP_002029668.1| GM25023 [Drosophila sechellia]
gi|194118611|gb|EDW40654.1| GM25023 [Drosophila sechellia]
Length = 1050
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V EK +++ A + F
Sbjct: 278 QRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAMSPFAIDLDF 337
Query: 63 YLE------GKC 68
+E GKC
Sbjct: 338 IVEEYTAGKGKC 349
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V E
Sbjct: 264 YEWQNECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQE 323
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ A + F +E
Sbjct: 324 KVSAMSPFAIDLDFIVE 340
>gi|241237976|ref|XP_002401231.1| DNA polymerase theta, putative [Ixodes scapularis]
gi|215496132|gb|EEC05773.1| DNA polymerase theta, putative [Ixodes scapularis]
Length = 750
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 65 EGKCLEMIQN---KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
+ +CL++ Q ++ V S+PTSGGKTLV E+L ++EL + +S +F+LPY+SLV EK +
Sbjct: 14 QKECLQLAQRSGRRHLVYSLPTSGGKTLVAEVLSLQELLLASRSVLFVLPYVSLVQEKVR 73
Query: 122 SLAKAAEEFKFYLE 135
L+ A + F +E
Sbjct: 74 DLSPLAVDLGFLVE 87
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 44/61 (72%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
++ V S+PTSGGKTLV E+L ++EL + +S +F+LPY+SLV EK + L+ A + F +
Sbjct: 27 RHLVYSLPTSGGKTLVAEVLSLQELLLASRSVLFVLPYVSLVQEKVRDLSPLAVDLGFLV 86
Query: 65 E 65
E
Sbjct: 87 E 87
>gi|149046778|gb|EDL99552.1| rCG37823, isoform CRA_a [Rattus norvegicus]
Length = 735
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 306 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVAIVQEKISSLSSFGIELGF 365
Query: 63 YLE 65
++E
Sbjct: 366 FVE 368
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 306 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVAIVQEKISSLSSFGIELGF 365
Query: 133 YLE 135
++E
Sbjct: 366 FVE 368
>gi|281604129|ref|NP_001014156.2| helicase, POLQ-like [Rattus norvegicus]
gi|149046780|gb|EDL99554.1| rCG37823, isoform CRA_c [Rattus norvegicus]
Length = 1065
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 306 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVAIVQEKISSLSSFGIELGF 365
Query: 63 YLE 65
++E
Sbjct: 366 FVE 368
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 306 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLLILPYVAIVQEKISSLSSFGIELGF 365
Query: 133 YLE 135
++E
Sbjct: 366 FVE 368
>gi|341891947|gb|EGT47882.1| hypothetical protein CAEBREN_02542 [Caenorhabditis brenneri]
Length = 899
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E Y+ + K E + + + +CL ++ +NC+LS+PT GKTL+ E+L+++E ++++
Sbjct: 151 EIYKKMKKLKEFYDW--QKECLADKRLLDGENCILSLPTGAGKTLIAEVLMLREAIVRKR 208
Query: 105 SAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
+AI +LPY+++V EK SLA + F +E
Sbjct: 209 NAILVLPYVAIVQEKISSLAPFEDAFGINIE 239
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 47/65 (72%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ +NC+LS+PT GKTL+ E+L+++E +++++AI +LPY+++V EK SLA + F
Sbjct: 175 LLDGENCILSLPTGAGKTLIAEVLMLREAIVRKRNAILVLPYVAIVQEKISSLAPFEDAF 234
Query: 61 KFYLE 65
+E
Sbjct: 235 GINIE 239
>gi|195435520|ref|XP_002065728.1| GK20010 [Drosophila willistoni]
gi|194161813|gb|EDW76714.1| GK20010 [Drosophila willistoni]
Length = 1063
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + ++PTSGGKTLV EIL+++EL ++K+ +FILPY+S+V EK +++ A F
Sbjct: 285 QRKNLIYALPTSGGKTLVAEILMLRELLCREKNVLFILPYVSIVQEKVSAMSPFAIALDF 344
Query: 63 YLE------GKC 68
+E GKC
Sbjct: 345 LVEEYTAGKGKC 356
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + Q KN + ++PTSGGKTLV EIL+++EL ++K+ +FILPY+S+V E
Sbjct: 271 YEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCREKNVLFILPYVSIVQE 330
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ A F +E
Sbjct: 331 KVSAMSPFAIALDFLVE 347
>gi|83318174|gb|AAI09170.1| Hel308 protein [Mus musculus]
Length = 971
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 308 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 367
Query: 63 YLE 65
++E
Sbjct: 368 FVE 370
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 308 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 367
Query: 133 YLE 135
++E
Sbjct: 368 FVE 370
>gi|391332508|ref|XP_003740676.1| PREDICTED: helicase POLQ-like [Metaseiulus occidentalis]
Length = 851
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ +N + S+PTSGGKTLV EIL KEL + +++ +FILPY+S+V EK ++LA E F
Sbjct: 132 RRQNLIYSLPTSGGKTLVAEILAFKELIVHRRNVLFILPYVSIVQEKVRALANLGIELGF 191
Query: 63 YLE 65
+E
Sbjct: 192 LVE 194
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N + S+PTSGGKTLV EIL KEL + +++ +FILPY+S+V EK ++LA E F
Sbjct: 132 RRQNLIYSLPTSGGKTLVAEILAFKELIVHRRNVLFILPYVSIVQEKVRALANLGIELGF 191
Query: 133 YLE 135
+E
Sbjct: 192 LVE 194
>gi|126331098|ref|XP_001371040.1| PREDICTED: helicase, POLQ-like [Monodelphis domestica]
Length = 1061
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
CL+ Q KN + S+PTSGGKTLV EIL+++EL +QK+ + ILPY+++V EK SL+
Sbjct: 304 CLQ--QRKNLIYSLPTSGGKTLVAEILMLQELLCRQKNVLMILPYVAIVQEKISSLSSFG 361
Query: 128 EEFKFYLE 135
E F +E
Sbjct: 362 LELGFLVE 369
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV EIL+++EL +QK+ + ILPY+++V EK SL+ E F
Sbjct: 307 QRKNLIYSLPTSGGKTLVAEILMLQELLCRQKNVLMILPYVAIVQEKISSLSSFGLELGF 366
Query: 63 YLE 65
+E
Sbjct: 367 LVE 369
>gi|189234951|ref|XP_973059.2| PREDICTED: similar to mutagen-sensitive 301 CG7972-PA [Tribolium
castaneum]
Length = 965
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + +++N + ++PTSGGKTLV EIL+++E+ ++K+AIFILPY+++V E
Sbjct: 172 YDWQDECLNLPAIKEHRNLIYALPTSGGKTLVAEILMLREIMCRKKNAIFILPYVAIVQE 231
Query: 119 KYQSLAKAAEEFKFYLE 135
K +L+ A F +E
Sbjct: 232 KVWALSPFAVALDFLVE 248
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 48/63 (76%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+++N + ++PTSGGKTLV EIL+++E+ ++K+AIFILPY+++V EK +L+ A F
Sbjct: 186 EHRNLIYALPTSGGKTLVAEILMLREIMCRKKNAIFILPYVAIVQEKVWALSPFAVALDF 245
Query: 63 YLE 65
+E
Sbjct: 246 LVE 248
>gi|270002335|gb|EEZ98782.1| hypothetical protein TcasGA2_TC001346 [Tribolium castaneum]
Length = 1079
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 54/77 (70%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + +++N + ++PTSGGKTLV EIL+++E+ ++K+AIFILPY+++V E
Sbjct: 286 YDWQDECLNLPAIKEHRNLIYALPTSGGKTLVAEILMLREIMCRKKNAIFILPYVAIVQE 345
Query: 119 KYQSLAKAAEEFKFYLE 135
K +L+ A F +E
Sbjct: 346 KVWALSPFAVALDFLVE 362
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 48/63 (76%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+++N + ++PTSGGKTLV EIL+++E+ ++K+AIFILPY+++V EK +L+ A F
Sbjct: 300 EHRNLIYALPTSGGKTLVAEILMLREIMCRKKNAIFILPYVAIVQEKVWALSPFAVALDF 359
Query: 63 YLE 65
+E
Sbjct: 360 LVE 362
>gi|198467131|ref|XP_001354267.2| GA20732 [Drosophila pseudoobscura pseudoobscura]
gi|198149520|gb|EAL31320.2| GA20732 [Drosophila pseudoobscura pseudoobscura]
Length = 1052
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V EK +++ A + F
Sbjct: 281 QRKNLIYALPTSGGKTLVAEILMLRELLCQERNVLFILPYVSIVQEKVSAMSPFAIDLDF 340
Query: 63 YLE------GKC 68
++ GKC
Sbjct: 341 IVDEYTAGKGKC 352
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V E
Sbjct: 267 YEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCQERNVLFILPYVSIVQE 326
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ A + F ++
Sbjct: 327 KVSAMSPFAIDLDFIVD 343
>gi|301620543|ref|XP_002939628.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Xenopus
(Silurana) tropicalis]
Length = 1005
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK + LA E F
Sbjct: 263 ERKNLIYSLPTSGGKTLVAEILVLQELLCRQKDVLMILPYVAIVQEKVRGLASFGVELDF 322
Query: 63 YLE 65
+E
Sbjct: 323 LVE 325
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK + LA E F
Sbjct: 263 ERKNLIYSLPTSGGKTLVAEILVLQELLCRQKDVLMILPYVAIVQEKVRGLASFGVELDF 322
Query: 133 YLE 135
+E
Sbjct: 323 LVE 325
>gi|19110784|gb|AAL85275.1|AF436846_1 DNA helicase HEL308 [Mus musculus]
Length = 527
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 13 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 72
Query: 63 YLE 65
++E
Sbjct: 73 FVE 75
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 13 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 72
Query: 133 YLE 135
++E
Sbjct: 73 FVE 75
>gi|321466793|gb|EFX77786.1| hypothetical protein DAPPUDRAFT_320958 [Daphnia pulex]
Length = 968
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63
N+N + S+PTSGGKTLV EIL+++EL QK +F++PY+S+V EK ++L+ A F
Sbjct: 216 NQNLLYSLPTSGGKTLVAEILMVRELLCNQKHCLFVMPYVSIVQEKIRTLSSLAIALNFA 275
Query: 64 LE 65
+E
Sbjct: 276 VE 277
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 133
N+N + S+PTSGGKTLV EIL+++EL QK +F++PY+S+V EK ++L+ A F
Sbjct: 216 NQNLLYSLPTSGGKTLVAEILMVRELLCNQKHCLFVMPYVSIVQEKIRTLSSLAIALNFA 275
Query: 134 LE 135
+E
Sbjct: 276 VE 277
>gi|148688331|gb|EDL20278.1| mCG128467, isoform CRA_b [Mus musculus]
Length = 1066
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 63 YLE 65
++E
Sbjct: 370 FVE 372
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 133 YLE 135
++E
Sbjct: 370 FVE 372
>gi|124487403|ref|NP_001074576.1| helicase POLQ-like [Mus musculus]
gi|123792912|sp|Q2VPA6.2|HELQ_MOUSE RecName: Full=Helicase POLQ-like; AltName: Full=Mus308-like
helicase; AltName: Full=POLQ-like helicase
gi|115344367|gb|AAI09171.2| Helicase, mus308-like (Drosophila) [Mus musculus]
Length = 1069
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 63 YLE 65
++E
Sbjct: 370 FVE 372
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 133 YLE 135
++E
Sbjct: 370 FVE 372
>gi|52139047|gb|AAH82601.1| Helicase, mus308-like (Drosophila) [Mus musculus]
Length = 1069
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 63 YLE 65
++E
Sbjct: 370 FVE 372
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 133 YLE 135
++E
Sbjct: 370 FVE 372
>gi|390346488|ref|XP_796097.3| PREDICTED: helicase POLQ-like isoform 2 [Strongylocentrotus
purpuratus]
gi|390346490|ref|XP_003726564.1| PREDICTED: helicase POLQ-like isoform 1 [Strongylocentrotus
purpuratus]
Length = 1173
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ +N + S+PTSGGKTLV EI+IM+++ QK A+ ILP++S+V EK SL A + F
Sbjct: 451 EGRNLIYSLPTSGGKTLVAEIIIMQQILCHQKDALLILPFVSIVQEKVTSLTPLAVDLGF 510
Query: 63 YLE 65
+E
Sbjct: 511 LVE 513
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N + S+PTSGGKTLV EI+IM+++ QK A+ ILP++S+V EK SL A + F
Sbjct: 451 EGRNLIYSLPTSGGKTLVAEIIIMQQILCHQKDALLILPFVSIVQEKVTSLTPLAVDLGF 510
Query: 133 YLE 135
+E
Sbjct: 511 LVE 513
>gi|339257148|ref|XP_003369944.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
gi|316965512|gb|EFV50215.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
Length = 923
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 47/65 (72%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+V +N ++++PT GGKTL+ EILI+K+L +QK A+F+LPY+S+V EK + L +
Sbjct: 145 IVSGRNLIITLPTGGGKTLLAEILILKQLLCQQKDALFVLPYVSIVQEKVKGLLPLGLDL 204
Query: 61 KFYLE 65
+F +E
Sbjct: 205 EFLVE 209
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 47/65 (72%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ +N ++++PT GGKTL+ EILI+K+L +QK A+F+LPY+S+V EK + L +
Sbjct: 145 IVSGRNLIITLPTGGGKTLLAEILILKQLLCQQKDALFVLPYVSIVQEKVKGLLPLGLDL 204
Query: 131 KFYLE 135
+F +E
Sbjct: 205 EFLVE 209
>gi|156394395|ref|XP_001636811.1| predicted protein [Nematostella vectensis]
gi|156223918|gb|EDO44748.1| predicted protein [Nematostella vectensis]
Length = 771
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEM--IQNK-NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + CL++ IQ K N + S+PTSGGKTLV EIL+MKEL + K + +LP++S+V E
Sbjct: 22 YEWQDACLKLPAIQEKRNLIYSLPTSGGKTLVAEILMMKELLVHHKDVVLVLPFVSIVQE 81
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ + A E F +E
Sbjct: 82 KVKTITQFAVELGFVVE 98
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ +N + S+PTSGGKTLV EIL+MKEL + K + +LP++S+V EK +++ + A E F
Sbjct: 36 EKRNLIYSLPTSGGKTLVAEILMMKELLVHHKDVVLVLPFVSIVQEKVKTITQFAVELGF 95
Query: 63 YLE 65
+E
Sbjct: 96 VVE 98
>gi|26342655|dbj|BAC34984.1| unnamed protein product [Mus musculus]
Length = 749
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 63 YLE 65
++E
Sbjct: 370 FVE 372
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 133 YLE 135
++E
Sbjct: 370 FVE 372
>gi|71995032|ref|NP_001022911.1| Protein HELQ-1, isoform a [Caenorhabditis elegans]
gi|351065833|emb|CCD61810.1| Protein HELQ-1, isoform a [Caenorhabditis elegans]
Length = 923
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 61 KFY-LEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
KFY + +CL ++ +NC+LS+PT GKTL+ E+L+++E +++++AI +LPY+++V
Sbjct: 167 KFYDWQQECLSDKRLLDGENCILSLPTGAGKTLIAEVLMLREAIVRKRNAILVLPYVAIV 226
Query: 117 HEKYQSLAKAAEEFKFYLE 135
EK +LA + F +E
Sbjct: 227 QEKISALAPFEDAFGINIE 245
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 47/65 (72%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ +NC+LS+PT GKTL+ E+L+++E +++++AI +LPY+++V EK +LA + F
Sbjct: 181 LLDGENCILSLPTGAGKTLIAEVLMLREAIVRKRNAILVLPYVAIVQEKISALAPFEDAF 240
Query: 61 KFYLE 65
+E
Sbjct: 241 GINIE 245
>gi|195588631|ref|XP_002084061.1| GD14056 [Drosophila simulans]
gi|194196070|gb|EDX09646.1| GD14056 [Drosophila simulans]
Length = 1011
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 6/72 (8%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + ++PTSGGKTLV EIL+++EL +++ +FILPY+S+V EK +++ A + F
Sbjct: 280 QRKNLIYALPTSGGKTLVAEILMLRELLCCERNVLFILPYVSIVQEKVSAMSPFAIDLDF 339
Query: 63 YLE------GKC 68
+E GKC
Sbjct: 340 IVEEYTAGKGKC 351
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + Q KN + ++PTSGGKTLV EIL+++EL +++ +FILPY+S+V E
Sbjct: 266 YEWQNECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCCERNVLFILPYVSIVQE 325
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ A + F +E
Sbjct: 326 KVSAMSPFAIDLDFIVE 342
>gi|195376279|ref|XP_002046924.1| GJ13152 [Drosophila virilis]
gi|194154082|gb|EDW69266.1| GJ13152 [Drosophila virilis]
Length = 1025
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + ++PTSGGKTLV EIL+++EL +Q++ +FILPY+S+V EK +++ A F
Sbjct: 251 KRKNLIYALPTSGGKTLVAEILMLRELLCRQRNVLFILPYVSIVQEKVSAMSPFAIALDF 310
Query: 63 YLE------GKCLEMIQNKNCVLSIPT 83
++ GKC Q K L I +
Sbjct: 311 IVDEYTAGKGKCPPQPQRKRRSLFIAS 337
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + ++PTSGGKTLV EIL+++EL +Q++ +FILPY+S+V EK +++ A F
Sbjct: 251 KRKNLIYALPTSGGKTLVAEILMLRELLCRQRNVLFILPYVSIVQEKVSAMSPFAIALDF 310
Query: 133 YLE 135
++
Sbjct: 311 IVD 313
>gi|449269167|gb|EMC79970.1| Helicase POLQ-like protein, partial [Columba livia]
Length = 1000
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV EI+I++EL +QK+ + ILPY+++V EK + L+ E F
Sbjct: 258 QRKNLIYSLPTSGGKTLVAEIIILQELLCRQKNVLMILPYVAIVQEKVRGLSSFGIELGF 317
Query: 63 YLE 65
+E
Sbjct: 318 LVE 320
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q KN + S+PTSGGKTLV EI+I++EL +QK+ + ILPY+++V EK + L+ E F
Sbjct: 258 QRKNLIYSLPTSGGKTLVAEIIILQELLCRQKNVLMILPYVAIVQEKVRGLSSFGIELGF 317
Query: 133 YLE 135
+E
Sbjct: 318 LVE 320
>gi|195167763|ref|XP_002024702.1| GL22611 [Drosophila persimilis]
gi|194108107|gb|EDW30150.1| GL22611 [Drosophila persimilis]
Length = 1029
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 50/72 (69%), Gaps = 6/72 (8%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V EK +++ A + F
Sbjct: 281 QRKNLIYALPTSGGKTLVAEILMLRELLCQERNVLFILPYVSIVQEKVSAMSPFAIDLDF 340
Query: 63 YLE------GKC 68
++ GKC
Sbjct: 341 IVDEYTAGKGKC 352
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 47/63 (74%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V EK +++ A + F
Sbjct: 281 QRKNLIYALPTSGGKTLVAEILMLRELLCQERNVLFILPYVSIVQEKVSAMSPFAIDLDF 340
Query: 133 YLE 135
++
Sbjct: 341 IVD 343
>gi|354505767|ref|XP_003514939.1| PREDICTED: helicase POLQ [Cricetulus griseus]
Length = 1012
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ +N + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 264 KRRNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 323
Query: 63 YLE 65
++E
Sbjct: 324 FVE 326
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 264 KRRNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 323
Query: 133 YLE 135
++E
Sbjct: 324 FVE 326
>gi|195127341|ref|XP_002008127.1| GI13326 [Drosophila mojavensis]
gi|193919736|gb|EDW18603.1| GI13326 [Drosophila mojavensis]
Length = 1022
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 6/79 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V EK +++ A F
Sbjct: 250 KRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAMSPFAIALDF 309
Query: 63 YLE------GKCLEMIQNK 75
++ GKC Q K
Sbjct: 310 IVDEYTAGKGKCPPQPQRK 328
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL + + KN + ++PTSGGKTLV EIL+++EL ++++ +FILPY+S+V E
Sbjct: 236 YEWQDECLNLPAIHKRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQE 295
Query: 119 KYQSLAKAAEEFKFYLE 135
K +++ A F ++
Sbjct: 296 KVSAMSPFAIALDFIVD 312
>gi|195014037|ref|XP_001983947.1| GH16173 [Drosophila grimshawi]
gi|193897429|gb|EDV96295.1| GH16173 [Drosophila grimshawi]
Length = 1063
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + ++PTSGGKTLV EILI++EL ++++ +FILPY+S+V EK +++ A F
Sbjct: 289 KRKNLIYALPTSGGKTLVAEILILRELLCRERNVLFILPYVSIVQEKVSAMSPFAIALDF 348
Query: 63 YLE------GKCLEMIQNKNCVLSIPT 83
++ GKC Q K L I +
Sbjct: 349 IVDEYTAGKGKCPPQPQRKRRSLFIAS 375
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + ++PTSGGKTLV EILI++EL ++++ +FILPY+S+V EK +++ A F
Sbjct: 289 KRKNLIYALPTSGGKTLVAEILILRELLCRERNVLFILPYVSIVQEKVSAMSPFAIALDF 348
Query: 133 YLE 135
++
Sbjct: 349 IVD 351
>gi|50746585|ref|XP_420565.1| PREDICTED: helicase, POLQ-like [Gallus gallus]
Length = 1048
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV EILI++EL +QK + ILPY+++V EK L+ E F
Sbjct: 311 QRKNLIYSLPTSGGKTLVAEILILQELLCRQKDVLMILPYVAIVQEKVWGLSSFGIELGF 370
Query: 63 YLE 65
+E
Sbjct: 371 LVE 373
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q KN + S+PTSGGKTLV EILI++EL +QK + ILPY+++V EK L+ E F
Sbjct: 311 QRKNLIYSLPTSGGKTLVAEILILQELLCRQKDVLMILPYVAIVQEKVWGLSSFGIELGF 370
Query: 133 YLE 135
+E
Sbjct: 371 LVE 373
>gi|326918720|ref|XP_003205636.1| PREDICTED: helicase POLQ-like [Meleagris gallopavo]
Length = 1028
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV EILI++EL +QK + ILPY+++V EK L+ E F
Sbjct: 289 QRKNLIYSLPTSGGKTLVAEILILQELLCRQKDVLMILPYVAIVQEKVWGLSSFGIELGF 348
Query: 63 YLE 65
+E
Sbjct: 349 LVE 351
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q KN + S+PTSGGKTLV EILI++EL +QK + ILPY+++V EK L+ E F
Sbjct: 289 QRKNLIYSLPTSGGKTLVAEILILQELLCRQKDVLMILPYVAIVQEKVWGLSSFGIELGF 348
Query: 133 YLE 135
+E
Sbjct: 349 LVE 351
>gi|345316969|ref|XP_001517710.2| PREDICTED: helicase POLQ, partial [Ornithorhynchus anatinus]
Length = 777
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK + L E F
Sbjct: 29 QRKNLIFSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAVVQEKIRGLLHFGIELDF 88
Query: 63 YLE 65
+E
Sbjct: 89 LVE 91
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK + L E F
Sbjct: 29 QRKNLIFSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAVVQEKIRGLLHFGIELDF 88
Query: 133 YLE 135
+E
Sbjct: 89 LVE 91
>gi|449499812|ref|XP_004176332.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Taeniopygia
guttata]
Length = 1050
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV EI+I++EL +QK + ILPY+++V EK + L+ E F
Sbjct: 308 QRKNLIYSLPTSGGKTLVAEIIILQELLCRQKDVLMILPYVAIVQEKVRGLSSFGIELGF 367
Query: 63 YLE 65
+E
Sbjct: 368 LVE 370
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q KN + S+PTSGGKTLV EI+I++EL +QK + ILPY+++V EK + L+ E F
Sbjct: 308 QRKNLIYSLPTSGGKTLVAEIIILQELLCRQKDVLMILPYVAIVQEKVRGLSSFGIELGF 367
Query: 133 YLE 135
+E
Sbjct: 368 LVE 370
>gi|157129922|ref|XP_001661818.1| DNA polymerase theta [Aedes aegypti]
gi|108872031|gb|EAT36256.1| AAEL011649-PA [Aedes aegypti]
Length = 1128
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 65 EGKCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
+ +CL + ++ KN + ++PTSGGKTLV EI++ +E+ ++ +S +FI+PY+SL EK
Sbjct: 334 QKECLSLPAIVERKNLIYALPTSGGKTLVAEIIMFREVLLRNRSVMFIVPYVSLAQEKLA 393
Query: 122 SLAKAAEEFKFYLE 135
+L+ A +F +E
Sbjct: 394 ALSPFAVATQFLVE 407
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 47/65 (72%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+V+ KN + ++PTSGGKTLV EI++ +E+ ++ +S +FI+PY+SL EK +L+ A
Sbjct: 343 IVERKNLIYALPTSGGKTLVAEIIMFREVLLRNRSVMFIVPYVSLAQEKLAALSPFAVAT 402
Query: 61 KFYLE 65
+F +E
Sbjct: 403 QFLVE 407
>gi|330792068|ref|XP_003284112.1| hypothetical protein DICPUDRAFT_27081 [Dictyostelium purpureum]
gi|325085926|gb|EGC39324.1| hypothetical protein DICPUDRAFT_27081 [Dictyostelium purpureum]
Length = 1172
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 46/62 (74%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
KN V S+PTSGGKT+V EI++ + L I++K ++FI P++S+V E+ Q++++ A F +
Sbjct: 431 KNLVYSLPTSGGKTMVAEIILFRNLLIRKKKSLFIFPFVSIVTERVQAMSEFASALSFQV 490
Query: 65 EG 66
EG
Sbjct: 491 EG 492
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL +++ KN V S+PTSGGKT+V EI++ + L I++K ++FI P++S+V E
Sbjct: 415 YDWQKECLSSDDLLLGKNLVYSLPTSGGKTMVAEIILFRNLLIRKKKSLFIFPFVSIVTE 474
Query: 119 KYQSLAKAAEEFKFYLE 135
+ Q++++ A F +E
Sbjct: 475 RVQAMSEFASALSFQVE 491
>gi|311262877|ref|XP_003129397.1| PREDICTED: helicase, POLQ-like [Sus scrofa]
Length = 1119
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 8/122 (6%)
Query: 22 EILIMKELKIKQK----SAIFILPYISL---VHEKYQSLAKAAEEFKFYLEGKCLEMIQ- 73
E L+ +E+ + +K S+ + P+ SL V + Y + +++ L+ +Q
Sbjct: 298 ETLLSEEINVAKKTIASSSDDLGPFYSLPSKVRDLYAQFRGIEKLYEWQHTCLTLKSVQE 357
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 133
KN + S+PTSGGKTLV EIL+++EL ++K A+ ILPY+++V EK L+ E F+
Sbjct: 358 RKNLIYSLPTSGGKTLVAEILMLQELLCRRKDALMILPYVAIVQEKIAGLSSFGIELGFF 417
Query: 134 LE 135
+E
Sbjct: 418 VE 419
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL ++K A+ ILPY+++V EK L+ E F
Sbjct: 357 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDALMILPYVAIVQEKIAGLSSFGIELGF 416
Query: 63 YLE 65
++E
Sbjct: 417 FVE 419
>gi|158300279|ref|XP_551895.3| AGAP012297-PA [Anopheles gambiae str. PEST]
gi|157013082|gb|EAL38704.3| AGAP012297-PA [Anopheles gambiae str. PEST]
Length = 914
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ +N + ++PTSGGKTLV EIL+++E+ + ++ IFI+PY+SL EK +L+ A E +F
Sbjct: 122 ERRNLIYALPTSGGKTLVAEILMLREIICRLRNVIFIVPYVSLAQEKMIALSPFALELQF 181
Query: 63 YLE 65
LE
Sbjct: 182 LLE 184
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N + ++PTSGGKTLV EIL+++E+ + ++ IFI+PY+SL EK +L+ A E +F
Sbjct: 122 ERRNLIYALPTSGGKTLVAEILMLREIICRLRNVIFIVPYVSLAQEKMIALSPFALELQF 181
Query: 133 YLE 135
LE
Sbjct: 182 LLE 184
>gi|312384326|gb|EFR29076.1| hypothetical protein AND_02273 [Anopheles darlingi]
Length = 1206
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 67 KCLEMI---QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+CLE+ + +N + ++PTSGGKTLV EIL+++E+ + ++ IFI+PY+SL EK +L
Sbjct: 403 ECLELPAVRERRNLIYALPTSGGKTLVAEILMLREVLCRLRNVIFIVPYVSLAQEKMIAL 462
Query: 124 AKAAEEFKFYLE 135
+ + E +F LE
Sbjct: 463 SPFSIELQFLLE 474
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ +N + ++PTSGGKTLV EIL+++E+ + ++ IFI+PY+SL EK +L+ + E +F
Sbjct: 412 ERRNLIYALPTSGGKTLVAEILMLREVLCRLRNVIFIVPYVSLAQEKMIALSPFSIELQF 471
Query: 63 YLE 65
LE
Sbjct: 472 LLE 474
>gi|170049318|ref|XP_001855268.1| DNA polymerase theta [Culex quinquefasciatus]
gi|167871133|gb|EDS34516.1| DNA polymerase theta [Culex quinquefasciatus]
Length = 1224
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 41 PYISLVHEKYQSLAK--AAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILI 95
PY L + + +AK EE + + +CL +++ N + ++PTSGGKTLV EI++
Sbjct: 421 PYFGLPTQVKRLIAKYRGIEEL-YDWQKECLGLTAIVERHNLIYALPTSGGKTLVAEIIM 479
Query: 96 MKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
++E+ ++ ++ +FI+PY+S+ EK +LA A + F +E
Sbjct: 480 LREVMLRNRNVMFIVPYVSIAQEKLAALAPFAVDLAFLVE 519
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 47/65 (72%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+V+ N + ++PTSGGKTLV EI++++E+ ++ ++ +FI+PY+S+ EK +LA A +
Sbjct: 455 IVERHNLIYALPTSGGKTLVAEIIMLREVMLRNRNVMFIVPYVSIAQEKLAALAPFAVDL 514
Query: 61 KFYLE 65
F +E
Sbjct: 515 AFLVE 519
>gi|296196119|ref|XP_002745688.1| PREDICTED: helicase POLQ-like [Callithrix jacchus]
Length = 1101
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 22 EILIMKELKIKQK----SAIFILPYISL---VHEKYQSLAKAAEEFKFYLEGKCLEMIQ- 73
E L+ KE+ + +K S+ + P+ SL V + Y L + +++ L+ +Q
Sbjct: 292 ETLLSKEINVAKKTIESSSNDLGPFYSLPSKVRDLYVQLKGIEKLYEWQHTCLTLKSVQE 351
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 133
KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F+
Sbjct: 352 RKNLIYSLPTSGGKTLVAEILMLQELLCSRKDVLMILPYVAIVQEKISGLSSFGIELGFF 411
Query: 134 LE 135
+E
Sbjct: 412 VE 413
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCSRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
>gi|338723392|ref|XP_001494572.3| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Equus caballus]
Length = 1123
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 358 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSSFGVELGF 417
Query: 63 YLE 65
++E
Sbjct: 418 FVE 420
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 358 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSSFGVELGF 417
Query: 133 YLE 135
++E
Sbjct: 418 FVE 420
>gi|355694423|gb|AER99664.1| helicase, POLQ-like protein [Mustela putorius furo]
Length = 650
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 22 EILIMKELKIKQK----SAIFILPYISL---VHEKYQSLAKAAEEFKFYLEGKCLEMIQ- 73
E L+ +E+ + QK S+ + P+ SL V + Y + +++ L +Q
Sbjct: 66 ETLLSEEISVAQKTMESSSDDLGPFYSLPSKVRDLYVQFKGIEKLYEWQHTCLTLNSVQE 125
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 133
KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F+
Sbjct: 126 RKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGFF 185
Query: 134 LE 135
+E
Sbjct: 186 VE 187
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 125 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 184
Query: 63 YLE 65
++E
Sbjct: 185 FVE 187
>gi|242022123|ref|XP_002431491.1| DNA polymerase theta, putative [Pediculus humanus corporis]
gi|212516779|gb|EEB18753.1| DNA polymerase theta, putative [Pediculus humanus corporis]
Length = 1051
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 69 LEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
LE ++N +N V ++PTSGGKTLV EILI++E+ +++ +FILPY+S+V EK + ++ A
Sbjct: 287 LESVKNHQNLVYALPTSGGKTLVAEILILREILCYKRNVLFILPYVSIVQEKVKDFSQFA 346
Query: 128 EEFKFYLE 135
+ F +E
Sbjct: 347 IDLGFLVE 354
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++N V ++PTSGGKTLV EILI++E+ +++ +FILPY+S+V EK + ++ A + F
Sbjct: 292 NHQNLVYALPTSGGKTLVAEILILREILCYKRNVLFILPYVSIVQEKVKDFSQFAIDLGF 351
Query: 63 YLE 65
+E
Sbjct: 352 LVE 354
>gi|344284980|ref|XP_003414242.1| PREDICTED: helicase POLQ [Loxodonta africana]
Length = 1121
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 371 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSTFGMELGF 430
Query: 63 YLE 65
++E
Sbjct: 431 FVE 433
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 371 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSTFGMELGF 430
Query: 133 YLE 135
++E
Sbjct: 431 FVE 433
>gi|380011352|ref|XP_003689772.1| PREDICTED: helicase POLQ-like [Apis florea]
Length = 929
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 8/82 (9%)
Query: 62 FYLEGKCLEM--IQNK-NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + CL + I+NK N + ++PTSGGKTLV EIL+++EL +K+AIFILP++++V E
Sbjct: 138 YQWQDDCLNLDAIKNKKNLIYALPTSGGKTLVAEILMLQELMCNKKNAIFILPFVAIVQE 197
Query: 119 KY-----QSLAKAAEEFKFYLE 135
K QS+ A E F +E
Sbjct: 198 KVSISIIQSMTPFALELGFLVE 219
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY-----QSLAKAAEE 59
KN + ++PTSGGKTLV EIL+++EL +K+AIFILP++++V EK QS+ A E
Sbjct: 154 KNLIYALPTSGGKTLVAEILMLQELMCNKKNAIFILPFVAIVQEKVSISIIQSMTPFALE 213
Query: 60 FKFYLE 65
F +E
Sbjct: 214 LGFLVE 219
>gi|395834325|ref|XP_003790157.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Otolemur
garnettii]
Length = 983
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 356 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSSFGVELGF 415
Query: 63 YLE 65
++E
Sbjct: 416 FVE 418
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 356 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSSFGVELGF 415
Query: 133 YLE 135
++E
Sbjct: 416 FVE 418
>gi|444723234|gb|ELW63893.1| Helicase POLQ-like protein [Tupaia chinensis]
Length = 1018
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 336 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSNFGIELGF 395
Query: 63 YLE 65
++E
Sbjct: 396 FVE 398
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 336 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSNFGIELGF 395
Query: 133 YLE 135
++E
Sbjct: 396 FVE 398
>gi|348567326|ref|XP_003469451.1| PREDICTED: helicase POLQ-like [Cavia porcellus]
Length = 1138
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY++LV EK L+ E F
Sbjct: 301 ERKNLIYSLPTSGGKTLVAEILMLQELLCQRKDVLMILPYVALVQEKISGLSSFGIELGF 360
Query: 63 YLE 65
++E
Sbjct: 361 FVE 363
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY++LV EK L+ E F
Sbjct: 301 ERKNLIYSLPTSGGKTLVAEILMLQELLCQRKDVLMILPYVALVQEKISGLSSFGIELGF 360
Query: 133 YLE 135
++E
Sbjct: 361 FVE 363
>gi|431916152|gb|ELK16404.1| Helicase POLQ-like protein [Pteropus alecto]
Length = 1040
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 313 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSSFGIELGF 372
Query: 63 YLE 65
++E
Sbjct: 373 FVE 375
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 313 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSSFGIELGF 372
Query: 133 YLE 135
++E
Sbjct: 373 FVE 375
>gi|351697255|gb|EHB00174.1| Helicase POLQ-like protein [Heterocephalus glaber]
Length = 1060
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 316 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSSFGIELGF 375
Query: 63 YLE 65
++E
Sbjct: 376 FVE 378
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL ++K + ILPY+++V EK L+ E F
Sbjct: 316 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRKDVLMILPYVAIVQEKISGLSSFGIELGF 375
Query: 133 YLE 135
++E
Sbjct: 376 FVE 378
>gi|357614664|gb|EHJ69202.1| hypothetical protein KGM_11617 [Danaus plexippus]
Length = 881
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
Query: 8 VLSIPTSG---GKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
+L I SG +T I + K + + + LP I V +++ + + +
Sbjct: 91 LLDIRESGILAAETEEKSIFVPKANPVTKHEGFYGLPMI--VKGLFKTYRNIEQLYDWQE 148
Query: 65 EGKCLEMIQNK-NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
E L+ I+++ N + ++PTSGGKTLV E+L+++E+ ++ +AIFILP++++V EK +L
Sbjct: 149 ECLNLQAIRDRLNLIYALPTSGGKTLVAEVLMLREVINRKHNAIFILPFVAIVQEKIWAL 208
Query: 124 AKAAEEFKFYLE 135
A A + +F +E
Sbjct: 209 APFALQLEFLVE 220
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 46/60 (76%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N + ++PTSGGKTLV E+L+++E+ ++ +AIFILP++++V EK +LA A + +F +E
Sbjct: 161 NLIYALPTSGGKTLVAEVLMLREVINRKHNAIFILPFVAIVQEKIWALAPFALQLEFLVE 220
>gi|327273022|ref|XP_003221282.1| PREDICTED: helicase POLQ-like [Anolis carolinensis]
Length = 1120
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q KN + S+PTSGGKTLV EILI++EL KQ + ILPY+++V EK ++ E F
Sbjct: 380 QRKNLIYSLPTSGGKTLVAEILILQELLCKQMDVLMILPYVAIVQEKVGGMSGFGMELGF 439
Query: 63 YLE 65
+E
Sbjct: 440 LVE 442
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q KN + S+PTSGGKTLV EILI++EL KQ + ILPY+++V EK ++ E F
Sbjct: 380 QRKNLIYSLPTSGGKTLVAEILILQELLCKQMDVLMILPYVAIVQEKVGGMSGFGMELGF 439
Query: 133 YLE 135
+E
Sbjct: 440 LVE 442
>gi|426231978|ref|XP_004010013.1| PREDICTED: helicase POLQ-like [Ovis aries]
Length = 1090
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 340 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 399
Query: 63 YLE 65
++E
Sbjct: 400 FVE 402
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 340 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 399
Query: 133 YLE 135
++E
Sbjct: 400 FVE 402
>gi|297466747|ref|XP_002704678.1| PREDICTED: LOW QUALITY PROTEIN: helicase, POLQ-like [Bos taurus]
Length = 1075
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 325 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 384
Query: 63 YLE 65
++E
Sbjct: 385 FVE 387
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 325 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 384
Query: 133 YLE 135
++E
Sbjct: 385 FVE 387
>gi|359066602|ref|XP_002688448.2| PREDICTED: LOW QUALITY PROTEIN: helicase, POLQ-like [Bos taurus]
Length = 1087
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 325 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 384
Query: 63 YLE 65
++E
Sbjct: 385 FVE 387
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 325 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 384
Query: 133 YLE 135
++E
Sbjct: 385 FVE 387
>gi|301753319|ref|XP_002912509.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Ailuropoda
melanoleuca]
Length = 1105
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 355 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 414
Query: 63 YLE 65
++E
Sbjct: 415 FVE 417
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 355 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 414
Query: 133 YLE 135
++E
Sbjct: 415 FVE 417
>gi|290983714|ref|XP_002674573.1| predicted protein [Naegleria gruberi]
gi|284088164|gb|EFC41829.1| predicted protein [Naegleria gruberi]
Length = 829
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 46/62 (74%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
KN + S+PTSGGKTL+ EIL+++ ++ +K ++F+LPY+S+ EK ++ +++ F++
Sbjct: 174 KNVLYSLPTSGGKTLIAEILMIRTCQLMKKKSLFVLPYVSICEEKTTTMELISDQMNFFV 233
Query: 65 EG 66
EG
Sbjct: 234 EG 235
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 47/66 (71%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
E+ KN + S+PTSGGKTL+ EIL+++ ++ +K ++F+LPY+S+ EK ++ +++
Sbjct: 169 ELRMGKNVLYSLPTSGGKTLIAEILMIRTCQLMKKKSLFVLPYVSICEEKTTTMELISDQ 228
Query: 130 FKFYLE 135
F++E
Sbjct: 229 MNFFVE 234
>gi|296486374|tpg|DAA28487.1| TPA: helicase, POLQ-like [Bos taurus]
Length = 1137
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 375 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 434
Query: 63 YLE 65
++E
Sbjct: 435 FVE 437
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 375 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 434
Query: 133 YLE 135
++E
Sbjct: 435 FVE 437
>gi|410957307|ref|XP_003985271.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Felis catus]
Length = 1104
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 355 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 414
Query: 63 YLE 65
++E
Sbjct: 415 FVE 417
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 355 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 414
Query: 133 YLE 135
++E
Sbjct: 415 FVE 417
>gi|403263394|ref|XP_003924019.1| PREDICTED: helicase POLQ-like [Saimiri boliviensis boliviensis]
Length = 1099
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 22 EILIMKELKIKQK----SAIFILPYISL---VHEKYQSLAKAAEEFKFYLEGKCLEMIQ- 73
E L+ +E+ + +K S+ + P+ SL V + Y L + +++ L+ +Q
Sbjct: 290 ETLLSEEINVAKKTIESSSNDLGPFYSLPSKVRDLYVQLKGIEKLYEWQHTCLTLKSVQE 349
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 133
KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F+
Sbjct: 350 RKNLIYSLPTSGGKTLVAEILMLQELLCSRKDVLMILPYVAIVQEKISGLSSFGIELGFF 409
Query: 134 LE 135
+E
Sbjct: 410 VE 411
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 349 ERKNLIYSLPTSGGKTLVAEILMLQELLCSRKDVLMILPYVAIVQEKISGLSSFGIELGF 408
Query: 63 YLE 65
++E
Sbjct: 409 FVE 411
>gi|281346799|gb|EFB22383.1| hypothetical protein PANDA_000253 [Ailuropoda melanoleuca]
Length = 1004
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 254 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 313
Query: 63 YLE 65
++E
Sbjct: 314 FVE 316
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 254 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 313
Query: 133 YLE 135
++E
Sbjct: 314 FVE 316
>gi|74002142|ref|XP_544959.2| PREDICTED: helicase, POLQ-like [Canis lupus familiaris]
Length = 1072
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 323 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 382
Query: 63 YLE 65
++E
Sbjct: 383 FVE 385
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +++ + ILPY+++V EK L+ E F
Sbjct: 323 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRRDVLMILPYVAIVQEKISGLSSFGIELGF 382
Query: 133 YLE 135
++E
Sbjct: 383 FVE 385
>gi|332028729|gb|EGI68760.1| Helicase POLQ-like protein [Acromyrmex echinatior]
Length = 1043
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 8/82 (9%)
Query: 62 FYLEGKCLEMI--QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ + +CL++ KN + ++PTSGGKTLV EIL+ +E+ +K+AIFILPY++LV EK
Sbjct: 253 YQWQDECLKLAIKTKKNLIYALPTSGGKTLVAEILMFREIICNKKNAIFILPYVALVQEK 312
Query: 120 ------YQSLAKAAEEFKFYLE 135
QS+A A + F +E
Sbjct: 313 ACNFEIVQSMAILALKLGFLIE 334
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK------YQSLAKAAE 58
KN + ++PTSGGKTLV EIL+ +E+ +K+AIFILPY++LV EK QS+A A
Sbjct: 268 KNLIYALPTSGGKTLVAEILMFREIICNKKNAIFILPYVALVQEKACNFEIVQSMAILAL 327
Query: 59 EFKFYLE 65
+ F +E
Sbjct: 328 KLGFLIE 334
>gi|332233399|ref|XP_003265889.1| PREDICTED: helicase POLQ-like [Nomascus leucogenys]
Length = 1101
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL QK + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCQKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL QK + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCQKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|297673894|ref|XP_002814981.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Pongo abelii]
Length = 1100
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL QK + ILPY+++V EK L+ E F
Sbjct: 350 ERKNLIYSLPTSGGKTLVAEILMLQELLCCQKDVLMILPYVAIVQEKISGLSSFGIELGF 409
Query: 63 YLE 65
++E
Sbjct: 410 FVE 412
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL QK + ILPY+++V EK L+ E F
Sbjct: 350 ERKNLIYSLPTSGGKTLVAEILMLQELLCCQKDVLMILPYVAIVQEKISGLSSFGIELGF 409
Query: 133 YLE 135
++E
Sbjct: 410 FVE 412
>gi|328867787|gb|EGG16168.1| hypothetical protein DFA_09196 [Dictyostelium fasciculatum]
Length = 1164
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 46/62 (74%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
+N + S+PTSGGKTLV EI++++ + +++ +F+LPY+S+V+EK S +++ +F +
Sbjct: 431 RNFIYSLPTSGGKTLVAEIILLRNVLERKRICLFVLPYVSIVNEKADSFKLLSQQLRFKV 490
Query: 65 EG 66
EG
Sbjct: 491 EG 492
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 45/61 (73%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 134
+N + S+PTSGGKTLV EI++++ + +++ +F+LPY+S+V+EK S +++ +F +
Sbjct: 431 RNFIYSLPTSGGKTLVAEIILLRNVLERKRICLFVLPYVSIVNEKADSFKLLSQQLRFKV 490
Query: 135 E 135
E
Sbjct: 491 E 491
>gi|281207471|gb|EFA81654.1| hypothetical protein PPL_05648 [Polysphondylium pallidum PN500]
Length = 1179
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + +CL ++ N + S+PTSGGKTLV EI++++ +++K +FI P++S+V E
Sbjct: 506 YDWQKECLTDGNLLDGSNLIYSLPTSGGKTLVAEIILLRSAHLQKKKCLFIFPFVSIVTE 565
Query: 119 KYQSLAKAAEEFKFYLEV 136
K +SL + ++ KF ++
Sbjct: 566 KAESLVEFGQQLKFSVDA 583
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 46/66 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ N + S+PTSGGKTLV EI++++ +++K +FI P++S+V EK +SL + ++
Sbjct: 518 LLDGSNLIYSLPTSGGKTLVAEIILLRSAHLQKKKCLFIFPFVSIVTEKAESLVEFGQQL 577
Query: 61 KFYLEG 66
KF ++
Sbjct: 578 KFSVDA 583
>gi|66815705|ref|XP_641869.1| hypothetical protein DDB_G0279107 [Dictyostelium discoideum AX4]
gi|60469909|gb|EAL67892.1| hypothetical protein DDB_G0279107 [Dictyostelium discoideum AX4]
Length = 1238
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 7/86 (8%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
+N + S+PTSGGKTLV EI++ + L IK K ++FI P++S+V EK +S+ + + + +
Sbjct: 471 ENLIYSLPTSGGKTLVAEIILFRNLLIKNKKSLFIFPFVSIVCEKTESMHEFSSALQIPV 530
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLV 90
EG C +IP GK L+
Sbjct: 531 EGY-------HGCNGTIPVLPGKRLL 549
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 4/62 (6%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 134
+N + S+PTSGGKTLV EI++ + L IK K ++FI P++S+V EK +S+ EF L
Sbjct: 471 ENLIYSLPTSGGKTLVAEIILFRNLLIKNKKSLFIFPFVSIVCEKTESM----HEFSSAL 526
Query: 135 EV 136
++
Sbjct: 527 QI 528
>gi|291401472|ref|XP_002717082.1| PREDICTED: DNA helicase HEL308 [Oryctolagus cuniculus]
Length = 1054
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL ++ + ILPY+++V EK L+ E F
Sbjct: 304 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRNDVLMILPYVAIVQEKITGLSSFGIELGF 363
Query: 63 YLE 65
++E
Sbjct: 364 FVE 366
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL ++ + ILPY+++V EK L+ E F
Sbjct: 304 ERKNLIYSLPTSGGKTLVAEILMLQELLCRRNDVLMILPYVAIVQEKITGLSSFGIELGF 363
Query: 133 YLE 135
++E
Sbjct: 364 FVE 366
>gi|355569241|gb|EHH25383.1| Helicase POLQ-like protein [Macaca mulatta]
Length = 1101
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|380789743|gb|AFE66747.1| helicase POLQ-like [Macaca mulatta]
gi|383412853|gb|AFH29640.1| helicase POLQ-like [Macaca mulatta]
Length = 1101
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|109074228|ref|XP_001104832.1| PREDICTED: helicase, POLQ-like [Macaca mulatta]
Length = 1101
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|402869339|ref|XP_003898720.1| PREDICTED: helicase POLQ-like [Papio anubis]
Length = 1101
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|355749273|gb|EHH53672.1| Helicase POLQ-like protein [Macaca fascicularis]
Length = 1101
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGVELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|322802015|gb|EFZ22552.1| hypothetical protein SINV_10687 [Solenopsis invicta]
Length = 966
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%), Gaps = 6/76 (7%)
Query: 62 FYLEGKCLEMI--QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ + +CL++ KN + ++PTSGGKTLV EIL+++E+ +K+AIFILPY++LV
Sbjct: 239 YQWQDECLKIAVRTKKNLIYALPTSGGKTLVAEILMLREIICNKKNAIFILPYVALV--- 295
Query: 120 YQSLAKAAEEFKFYLE 135
QS+A A + F +E
Sbjct: 296 -QSMAVLALKLGFLIE 310
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 45/61 (73%), Gaps = 4/61 (6%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
KN + ++PTSGGKTLV EIL+++E+ +K+AIFILPY++LV QS+A A + F +
Sbjct: 254 KNLIYALPTSGGKTLVAEILMLREIICNKKNAIFILPYVALV----QSMAVLALKLGFLI 309
Query: 65 E 65
E
Sbjct: 310 E 310
>gi|410306630|gb|JAA31915.1| helicase, POLQ-like [Pan troglodytes]
Length = 1120
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|110556640|ref|NP_598375.2| helicase POLQ-like [Homo sapiens]
gi|119626339|gb|EAX05934.1| DNA helicase HEL308, isoform CRA_a [Homo sapiens]
gi|146327581|gb|AAI41525.1| Helicase, POLQ-like [synthetic construct]
Length = 1101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|410335387|gb|JAA36640.1| helicase, POLQ-like [Pan troglodytes]
Length = 1101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|332819388|ref|XP_003310356.1| PREDICTED: LOW QUALITY PROTEIN: helicase POLQ-like [Pan
troglodytes]
Length = 1101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|19110782|gb|AAL85274.1|AF436845_1 DNA helicase HEL308 [Homo sapiens]
Length = 1101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|426344841|ref|XP_004038961.1| PREDICTED: helicase POLQ-like [Gorilla gorilla gorilla]
Length = 1101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|296434521|sp|Q8TDG4.2|HELQ_HUMAN RecName: Full=Helicase POLQ-like; AltName: Full=Mus308-like
helicase; AltName: Full=POLQ-like helicase
Length = 1101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|410213602|gb|JAA04020.1| helicase, POLQ-like [Pan troglodytes]
Length = 1101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|397524624|ref|XP_003832289.1| PREDICTED: helicase POLQ-like [Pan paniscus]
Length = 1101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|410255698|gb|JAA15816.1| helicase, POLQ-like [Pan troglodytes]
Length = 1101
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>gi|119626340|gb|EAX05935.1| DNA helicase HEL308, isoform CRA_b [Homo sapiens]
Length = 1144
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 394 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 453
Query: 63 YLE 65
++E
Sbjct: 454 FVE 456
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 394 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 453
Query: 133 YLE 135
++E
Sbjct: 454 FVE 456
>gi|395519083|ref|XP_003763681.1| PREDICTED: DNA polymerase theta [Sarcophilus harrisii]
Length = 2630
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKYQS F + +CL ++++ +N V S PTS GKTLV E+LI+K +
Sbjct: 111 VLEKYQSFGVVQ---MFEWQAECLLLGQVLEGRNLVYSAPTSAGKTLVAELLILKRVLEM 167
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
+K A+FILP++S+ EK L +E +E
Sbjct: 168 RKKALFILPFVSVAKEKKYYLQNLFQEVGLLVE 200
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ +N V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 136 VLEGRNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQNLFQEV 195
Query: 61 KFYLEG 66
+EG
Sbjct: 196 GLLVEG 201
>gi|340055356|emb|CCC49670.1| putative DNA polymerase theta (helicase domain only) [Trypanosoma
vivax Y486]
Length = 1040
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG 66
V S+PTSGGKTLV E+ +++ L +KS FILPY+SL EK +SL + F +EG
Sbjct: 271 VYSMPTSGGKTLVAELFLLRCLINNKKSCFFILPYVSLAEEKTESLRPLGDALGFAVEG 329
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
V S+PTSGGKTLV E+ +++ L +KS FILPY+SL EK +SL + F +E
Sbjct: 271 VYSMPTSGGKTLVAELFLLRCLINNKKSCFFILPYVSLAEEKTESLRPLGDALGFAVE 328
>gi|348566979|ref|XP_003469279.1| PREDICTED: DNA polymerase theta-like isoform 1 [Cavia porcellus]
Length = 2569
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V +KY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 80 VQQKYHSFGVKQ---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 136
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEE 129
QK A+FILP++S+ EK L +E
Sbjct: 137 QKKALFILPFVSVAKEKKYYLQNLFQE 163
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + QK A+FILP++S+ EK L +E
Sbjct: 105 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETQKKALFILPFVSVAKEKKYYLQNLFQEV 164
Query: 61 KFYLEG 66
++G
Sbjct: 165 GIKVDG 170
>gi|348566981|ref|XP_003469280.1| PREDICTED: DNA polymerase theta-like isoform 2 [Cavia porcellus]
Length = 2290
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V +KY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 80 VQQKYHSFGVKQ---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 136
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEE 129
QK A+FILP++S+ EK L +E
Sbjct: 137 QKKALFILPFVSVAKEKKYYLQNLFQE 163
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + QK A+FILP++S+ EK L +E
Sbjct: 105 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETQKKALFILPFVSVAKEKKYYLQNLFQEV 164
Query: 61 KFYLEG 66
++G
Sbjct: 165 GIKVDG 170
>gi|363728424|ref|XP_416549.3| PREDICTED: DNA polymerase theta [Gallus gallus]
Length = 2613
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY SL F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 90 VLEKYHSLGVVQ---MFEWQAECLMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 146
Query: 103 QKSAIFILPYISLVHEK 119
+K A+FILP++S+ EK
Sbjct: 147 RKKALFILPFVSVAKEK 163
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK
Sbjct: 115 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEK 163
>gi|344282241|ref|XP_003412882.1| PREDICTED: DNA polymerase theta [Loxodonta africana]
Length = 2567
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 82 VLEKYYSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 138
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
QK A+FILP++S+ EK K+YL+ L
Sbjct: 139 QKKALFILPFVSVAKEK-----------KYYLQSL 162
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + QK A+FILP++S+ EK L +E
Sbjct: 107 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETQKKALFILPFVSVAKEKKYYLQSLFQEV 166
Query: 61 KFYLEG 66
++G
Sbjct: 167 GIKVDG 172
>gi|89267985|emb|CAJ81454.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis]
Length = 861
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY SL + F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 201 VLEKYGSLGVSQ---MFEWQAECLMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 257
Query: 103 QKSAIFILPYISLVHEK 119
++ A+FILP++S+ EK
Sbjct: 258 RRKALFILPFVSVAKEK 274
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + ++ A+FILP++S+ EK L +E
Sbjct: 226 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRRKALFILPFVSVAKEKTFYLQNLFQEV 285
Query: 61 KFYLEG 66
++G
Sbjct: 286 GVKVDG 291
>gi|334329765|ref|XP_003341262.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like
[Monodelphis domestica]
Length = 2581
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY SL F + +CL ++++ +N V S PTS GKTLV E+LI+K +
Sbjct: 96 VLEKYHSLGVVQ---MFEWQAECLLLGQVLEGRNLVYSAPTSAGKTLVAELLILKRVLEM 152
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
+K A+FILP+IS+ EK L +E +E
Sbjct: 153 RKKALFILPFISVAKEKKYYLQNLFQEVGLLVE 185
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ +N V S PTS GKTLV E+LI+K + +K A+FILP+IS+ EK L +E
Sbjct: 121 VLEGRNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFISVAKEKKYYLQNLFQEV 180
Query: 61 KFYLEG 66
+EG
Sbjct: 181 GLLVEG 186
>gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis]
Length = 2671
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY SL + F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 201 VLEKYGSLGVSQ---MFEWQAECLMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 257
Query: 103 QKSAIFILPYISLVHEK 119
++ A+FILP++S+ EK
Sbjct: 258 RRKALFILPFVSVAKEK 274
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + ++ A+FILP++S+ EK L +E
Sbjct: 226 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRRKALFILPFVSVAKEKTFYLQNLFQEV 285
Query: 61 KFYLEG 66
++G
Sbjct: 286 GVKVDG 291
>gi|395733254|ref|XP_002813286.2| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta [Pongo abelii]
Length = 2597
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 86 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 142
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
QK A+FILP++S+ EK K+YL+ L
Sbjct: 143 QKKALFILPFVSVAKEK-----------KYYLQSL 166
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + QK A+FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMQKKALFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GIKVDG 176
>gi|354477870|ref|XP_003501141.1| PREDICTED: DNA polymerase theta-like isoform 1 [Cricetulus griseus]
Length = 2571
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 79 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 135
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 136 RKKALFILPFVSVAKEK-----------KYYLQSL 159
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 104 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 163
Query: 61 KFYLEG 66
++G
Sbjct: 164 GIKVDG 169
>gi|354477872|ref|XP_003501142.1| PREDICTED: DNA polymerase theta-like isoform 2 [Cricetulus griseus]
Length = 2292
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 79 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 135
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 136 RKKALFILPFVSVAKEK-----------KYYLQSL 159
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 104 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 163
Query: 61 KFYLEG 66
++G
Sbjct: 164 GIKVDG 169
>gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis]
Length = 2435
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 10 SIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCL 69
S+ SG VG + ++L K A + LP L EKY SL F + +CL
Sbjct: 131 SLGPSGQHQHVG---VPEDLADKLLLANWGLPKAVL--EKYNSLGMVR---MFQWQAECL 182
Query: 70 ---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126
++++ KN V S PTS GKTLV E+LI+K + +K A+FILP+IS+ EK
Sbjct: 183 MVGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFISVAKEK------- 235
Query: 127 AEEFKFYLEVL 137
K+YL+ +
Sbjct: 236 ----KYYLQAI 242
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP+IS+ EK
Sbjct: 187 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFISVAKEK 235
>gi|326912829|ref|XP_003202748.1| PREDICTED: DNA polymerase theta-like [Meleagris gallopavo]
Length = 2152
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY +L F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 68 VLEKYHNLGVVQ---MFEWQAECLMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 124
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
+K A+FILP++S+ EK L +E +E
Sbjct: 125 RKKALFILPFVSVAKEKKCYLQALFQEVDVRVE 157
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 93 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKCYLQALFQEV 152
Query: 61 KFYLEG 66
+EG
Sbjct: 153 DVRVEG 158
>gi|402594344|gb|EJW88270.1| hypothetical protein WUBG_00824 [Wuchereria bancrofti]
Length = 126
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 61 KFY-LEGKCLE---MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
KFY + +CL +I KN +LS+ T GKTLV EI++++EL +++S I ++PY+++
Sbjct: 16 KFYDWQNQCLNDEHLISGKNMILSMATGAGKTLVAEIVMLRELINRRRSCILVVPYVAIA 75
Query: 117 HEKYQSLAKAAEEFKFYLE 135
EK SL+ ++F +E
Sbjct: 76 QEKVYSLSLFEDKFNICIE 94
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ KN +LS+ T GKTLV EI++++EL +++S I ++PY+++ EK SL+ ++F
Sbjct: 30 LISGKNMILSMATGAGKTLVAEIVMLRELINRRRSCILVVPYVAIAQEKVYSLSLFEDKF 89
Query: 61 KFYLE 65
+E
Sbjct: 90 NICIE 94
>gi|432846329|ref|XP_004065883.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Oryzias
latipes]
Length = 2391
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V E+YQ K F + +CL +++Q N V S PTS GKTLV E+L++K +
Sbjct: 67 VLERYQ---KHGVTQMFEWQXQCLTVGQVLQGGNLVYSAPTSAGKTLVSELLMLKRVLET 123
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEE 129
++ A+FILP++S+ EK Q L +E
Sbjct: 124 KRKALFILPFVSVAKEKMQYLQSVFQE 150
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++Q N V S PTS GKTLV E+L++K + ++ A+FILP++S+ EK Q L +E
Sbjct: 92 VLQGGNLVYSAPTSAGKTLVSELLMLKRVLETKRKALFILPFVSVAKEKMQYLQSVFQEA 151
Query: 61 KFYLEG 66
+EG
Sbjct: 152 GVRVEG 157
>gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ)
[Danio rerio]
Length = 2239
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKYQSL F + +CL ++++ +N V S PTS GKTLV E+LI+K +
Sbjct: 26 VLEKYQSLGV---HRMFEWQAECLTLGKVLEGQNLVYSAPTSAGKTLVSELLILKRVLET 82
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
++ A+FILP++S+ EK L +E +E
Sbjct: 83 RQKAMFILPFVSVAREKMFYLQNVFQEAGIRVE 115
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ +N V S PTS GKTLV E+LI+K + ++ A+FILP++S+ EK L +E
Sbjct: 51 VLEGQNLVYSAPTSAGKTLVSELLILKRVLETRQKAMFILPFVSVAREKMFYLQNVFQEA 110
Query: 61 KFYLEG 66
+EG
Sbjct: 111 GIRVEG 116
>gi|351703749|gb|EHB06668.1| DNA polymerase theta, partial [Heterocephalus glaber]
Length = 2573
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 23/137 (16%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFI----LPYISLVHEKYQSLAKAAEEFKFY 63
VLS P G++L L + + Q + + LP L +KY S F
Sbjct: 42 VLSPPPGLGRSLKAAGLCKQPVPDDQTDELLLANWGLPKAIL--QKYHSFGVKK---MFE 96
Query: 64 LEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+ +CL ++++ KN V S PTS GKTLV E+LI+K + QK A+FILP++S+ EK
Sbjct: 97 WQAECLLLGQVLEGKNLVYSAPTSSGKTLVAELLILKCVLEMQKKALFILPFVSVAKEK- 155
Query: 121 QSLAKAAEEFKFYLEVL 137
K+YL+ L
Sbjct: 156 ----------KYYLQSL 162
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + QK A+FILP++S+ EK L +E
Sbjct: 107 VLEGKNLVYSAPTSSGKTLVAELLILKCVLEMQKKALFILPFVSVAKEKKYYLQSLFQEV 166
Query: 61 KFYLEG 66
++G
Sbjct: 167 GIKVDG 172
>gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta]
Length = 2672
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 219 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 275
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 276 RKKALFILPFVSVAKEK-----------KYYLQSL 299
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 244 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 303
Query: 61 KFYLEG 66
++G
Sbjct: 304 GIKVDG 309
>gi|402859187|ref|XP_003894049.1| PREDICTED: DNA polymerase theta [Papio anubis]
Length = 2575
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 86 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 142
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 143 RKKALFILPFVSVAKEK-----------KYYLQSL 166
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GIKVDG 176
>gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio]
Length = 2593
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKYQSL F + +CL ++++ +N V S PTS GKTLV E+LI+K +
Sbjct: 295 VLEKYQSLGV---HRMFEWQAECLTLGKVLEGQNLVYSAPTSAGKTLVSELLILKRVLET 351
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
++ A+FILP++S+ EK L +E +E
Sbjct: 352 RQKAMFILPFVSVAREKMFYLQNVFQEAGIRVE 384
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ +N V S PTS GKTLV E+LI+K + ++ A+FILP++S+ EK L +E
Sbjct: 320 VLEGQNLVYSAPTSAGKTLVSELLILKRVLETRQKAMFILPFVSVAREKMFYLQNVFQEA 379
Query: 61 KFYLEG 66
+EG
Sbjct: 380 GIRVEG 385
>gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus]
Length = 2306
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 81 VLEKYDSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 137
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 138 RKKALFILPFVSVAKEK-----------KYYLQSL 161
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 106 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 165
Query: 61 KFYLEG 66
++G
Sbjct: 166 GIKVDG 171
>gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus]
Length = 2585
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 81 VLEKYDSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 137
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 138 RKKALFILPFVSVAKEK-----------KYYLQSL 161
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 106 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 165
Query: 61 KFYLEG 66
++G
Sbjct: 166 GIKVDG 171
>gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens]
Length = 2725
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 215 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 271
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 272 RKKALFILPFVSVAKEK-----------KYYLQSL 295
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 240 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 299
Query: 61 KFYLEG 66
++G
Sbjct: 300 GIKVDG 305
>gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens]
Length = 2724
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 213 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 269
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 270 RKKALFILPFVSVAKEK-----------KYYLQSL 293
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 238 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 297
Query: 61 KFYLEG 66
++G
Sbjct: 298 GIKVDG 303
>gi|345318618|ref|XP_001521144.2| PREDICTED: DNA polymerase theta, partial [Ornithorhynchus anatinus]
Length = 1881
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 38 FILPYISLVHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEIL 94
+L L HE ++ + F + +CL ++ +N V S PTS GKTLV E+L
Sbjct: 15 LLLASWGLPHEVLETYRRLGVVRMFEWQAECLLLGRVLGGRNLVYSAPTSAGKTLVAELL 74
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
I+K++ +K A+FILP++S+ EK K+YLE L
Sbjct: 75 ILKKVLETRKKALFILPFVSVAKEK-----------KYYLENL 106
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 11/61 (18%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
+N V S PTS GKTLV E+LI+K++ +K A+FILP++S+ EK K+YL
Sbjct: 55 RNLVYSAPTSAGKTLVAELLILKKVLETRKKALFILPFVSVAKEK-----------KYYL 103
Query: 65 E 65
E
Sbjct: 104 E 104
>gi|403302150|ref|XP_003941726.1| PREDICTED: DNA polymerase theta-like [Saimiri boliviensis
boliviensis]
Length = 475
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 132 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 188
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 189 RKKALFILPFVSVAKEK-----------KYYLQSL 212
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 157 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQE 215
>gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus]
gi|297470916|ref|XP_002684835.1| PREDICTED: DNA polymerase theta [Bos taurus]
gi|296491393|tpg|DAA33456.1| TPA: polymerase (DNA directed), theta-like [Bos taurus]
Length = 2593
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 86 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 142
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 143 RKKALFILPFVSVAKEK-----------KYYLQSL 166
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GIKVDG 176
>gi|342182643|emb|CCC92122.1| putative DNA polymerase theta (helicase domain only) [Trypanosoma
congolense IL3000]
Length = 1034
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
++ V S+PTSGGKTLV EI +++ L +KS +F+LP++SL EK +SL + F +
Sbjct: 259 ESLVYSLPTSGGKTLVAEISLLRCLLNAEKSCMFVLPFVSLAEEKAESLKTMGDALGFTV 318
Query: 65 EG 66
+G
Sbjct: 319 DG 320
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 134
++ V S+PTSGGKTLV EI +++ L +KS +F+LP++SL EK +SL + F +
Sbjct: 259 ESLVYSLPTSGGKTLVAEISLLRCLLNAEKSCMFVLPFVSLAEEKAESLKTMGDALGFTV 318
Query: 135 E 135
+
Sbjct: 319 D 319
>gi|426217534|ref|XP_004003008.1| PREDICTED: DNA polymerase theta [Ovis aries]
Length = 2594
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 86 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 142
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 143 RKKALFILPFVSVAKEK-----------KYYLQSL 166
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GIKVDG 176
>gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus]
gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 2547
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY + F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 81 VLEKYHNFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 137
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 138 RKKALFILPFVSVAKEK-----------KYYLQSL 161
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 106 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKYYLQSLFQEV 165
Query: 61 KFYLEG 66
++G
Sbjct: 166 GIKVDG 171
>gi|444727047|gb|ELW67555.1| DNA polymerase theta [Tupaia chinensis]
Length = 2536
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 90 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 146
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 147 RKKALFILPFVSVAKEK-----------KYYLQSL 170
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 115 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 174
Query: 61 KFYLEG 66
++G
Sbjct: 175 GIKVDG 180
>gi|332817593|ref|XP_001165150.2| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes]
gi|397509626|ref|XP_003825218.1| PREDICTED: DNA polymerase theta [Pan paniscus]
gi|410355515|gb|JAA44361.1| polymerase (DNA directed), theta [Pan troglodytes]
Length = 2596
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 86 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 142
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 143 RKKALFILPFVSVAKEK-----------KYYLQSL 166
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GIKVDG 176
>gi|431919720|gb|ELK18077.1| DNA polymerase theta [Pteropus alecto]
Length = 2597
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 19/105 (18%)
Query: 36 AIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGE 92
A + LP + V EKY S + FK+ E CL ++++ KN V S PTS GKTLV E
Sbjct: 78 ANWGLP--TPVLEKYHSFG-VKKMFKWQAE--CLLLGQVLEGKNLVYSAPTSAGKTLVAE 132
Query: 93 ILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+LI+K + +K A+FILP++S+ EK KFYL+ L
Sbjct: 133 LLILKRVLEMRKKALFILPFVSVAKEK-----------KFYLQSL 166
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 11/65 (16%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEK----------- 159
Query: 61 KFYLE 65
KFYL+
Sbjct: 160 KFYLQ 164
>gi|426341774|ref|XP_004036199.1| PREDICTED: DNA polymerase theta [Gorilla gorilla gorilla]
Length = 2363
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 86 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 142
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 143 RKKALFILPFVSVAKEK-----------KYYLQSL 166
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GIKVDG 176
>gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens]
Length = 2590
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 80 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 136
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 137 RKKALFILPFVSVAKEK-----------KYYLQSL 160
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 105 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 164
Query: 61 KFYLEG 66
++G
Sbjct: 165 GIKVDG 170
>gi|338716239|ref|XP_001502374.3| PREDICTED: DNA polymerase theta [Equus caballus]
Length = 2598
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 86 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 142
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 143 RKKALFILPFVSVAKEK-----------KYYLQSL 166
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GIKVDG 176
>gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens]
gi|325511332|sp|O75417.2|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase
eta
gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct]
Length = 2590
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 80 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 136
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 137 RKKALFILPFVSVAKEK-----------KYYLQSL 160
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 105 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 164
Query: 61 KFYLEG 66
++G
Sbjct: 165 GIKVDG 170
>gi|315044041|ref|XP_003171396.1| DNA polymerase theta [Arthroderma gypseum CBS 118893]
gi|311343739|gb|EFR02942.1| DNA polymerase theta [Arthroderma gypseum CBS 118893]
Length = 916
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H KY A + F + + CL + KN V S PT GGK+L
Sbjct: 103 PVLSLSHPKYGLPAALVKNFASLGVNAIYPWQASCLLGRGHLSGEKNLVYSAPTGGGKSL 162
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 163 VADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 202
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
KN V S PT GGK+LV ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 148 KNLVYSAPTGGGKSLVADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 202
>gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus]
gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus]
Length = 2265
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL +++ KN V S PTS GKTLV E+LI+K +
Sbjct: 79 VLEKYHSFGVRK---MFEWQAECLLLGHVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 135
Query: 103 QKSAIFILPYISLVHEK 119
+K A+FILP++S+ EK
Sbjct: 136 RKKALFILPFVSVAKEK 152
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 104 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKCYLQSLFQEV 163
Query: 61 KFYLEG 66
++G
Sbjct: 164 GLKVDG 169
>gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus]
Length = 2273
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL +++ KN V S PTS GKTLV E+LI+K +
Sbjct: 87 VLEKYHSFGVRK---MFEWQAECLLLGHVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 143
Query: 103 QKSAIFILPYISLVHEK 119
+K A+FILP++S+ EK
Sbjct: 144 RKKALFILPFVSVAKEK 160
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 112 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKCYLQSLFQEV 171
Query: 61 KFYLEG 66
++G
Sbjct: 172 GLKVDG 177
>gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus]
gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus]
gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus]
gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus]
gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus]
Length = 2544
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL +++ KN V S PTS GKTLV E+LI+K +
Sbjct: 79 VLEKYHSFGVRK---MFEWQAECLLLGHVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 135
Query: 103 QKSAIFILPYISLVHEK 119
+K A+FILP++S+ EK
Sbjct: 136 RKKALFILPFVSVAKEK 152
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 104 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKCYLQSLFQEV 163
Query: 61 KFYLEG 66
++G
Sbjct: 164 GLKVDG 169
>gi|410929499|ref|XP_003978137.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Takifugu
rubripes]
Length = 2305
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F + +CL +++Q N V S PTS GKTLV E+L++K + ++ A+FILP++S+ E
Sbjct: 185 FEWQAQCLTVGQVLQGANLVYSAPTSAGKTLVSELLMLKRVLETKRKALFILPFVSVAKE 244
Query: 119 KYQSLAKAAEE 129
K L EE
Sbjct: 245 KMHYLQSVFEE 255
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++Q N V S PTS GKTLV E+L++K + ++ A+FILP++S+ EK L EE
Sbjct: 197 VLQGANLVYSAPTSAGKTLVSELLMLKRVLETKRKALFILPFVSVAKEKMHYLQSVFEEA 256
Query: 61 KFYLEG 66
+EG
Sbjct: 257 GVRVEG 262
>gi|224043967|ref|XP_002187783.1| PREDICTED: DNA polymerase theta [Taeniopygia guttata]
Length = 2588
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY L F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 92 VLEKYHGLGVVQ---MFEWQAECLMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 148
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
K A+ ILP++S+ EK + L +E +E
Sbjct: 149 HKKALLILPFVSVAKEKKRYLQALFQEVDVRVE 181
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + K A+ ILP++S+ EK + L +E
Sbjct: 117 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETHKKALLILPFVSVAKEKKRYLQALFQEV 176
Query: 61 KFYLEG 66
+EG
Sbjct: 177 DVRVEG 182
>gi|440801182|gb|ELR22203.1| helicase domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 788
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 67 KCLE---MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+CL + +N +LS+PTSGGKTLV EI +++ +++ ++ + +LPY+SLV EK +L
Sbjct: 105 ECLNSRAFLSGENFLLSLPTSGGKTLVAEIALLRCIQVAGRTGLLVLPYVSLVAEKSLAL 164
Query: 124 AKAAEEFKFYLEV 136
+ F EV
Sbjct: 165 EQFTTALGFRTEV 177
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+ +N +LS+PTSGGKTLV EI +++ +++ ++ + +LPY+SLV EK +L +
Sbjct: 113 LSGENFLLSLPTSGGKTLVAEIALLRCIQVAGRTGLLVLPYVSLVAEKSLALEQFTTALG 172
Query: 62 FYLE 65
F E
Sbjct: 173 FRTE 176
>gi|156552095|ref|XP_001605062.1| PREDICTED: DNA polymerase theta-like [Nasonia vitripennis]
Length = 2242
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+NKN V S PTS GKTLV E L++K + ++K AIFILP++S+V EK
Sbjct: 201 ENKNLVYSAPTSAGKTLVAEFLMLKTVLERKKKAIFILPFVSVVREK 247
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+NKN V S PTS GKTLV E L++K + ++K AIFILP++S+V EK
Sbjct: 201 ENKNLVYSAPTSAGKTLVAEFLMLKTVLERKKKAIFILPFVSVVREK 247
>gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus]
Length = 2587
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL +++ KN V S PTS GKTLV E+LI+K +
Sbjct: 122 VLEKYHSFGVRK---MFEWQAECLLLGHVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 178
Query: 103 QKSAIFILPYISLVHEK 119
+K A+FILP++S+ EK
Sbjct: 179 RKKALFILPFVSVAKEK 195
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 147 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKKCYLQSLFQEV 206
Query: 61 KFYLEG 66
++G
Sbjct: 207 GLKVDG 212
>gi|324502503|gb|ADY41102.1| Helicase POLQ-like protein [Ascaris suum]
Length = 924
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLE---MIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
+ + YQ K + + + + +CL ++ +N ++S+PT GKTL+ E+L++ E I+
Sbjct: 171 IRQLYQEKRKIKDLYDW--QKQCLSNSCLLNGENMIISLPTGAGKTLIAEVLMIHEAIIR 228
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
++S I ++PY+++ EK QSL E +E
Sbjct: 229 KRSCILMVPYVAVAQEKVQSLCIFEESLPLLIE 261
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ +N ++S+PT GKTL+ E+L++ E I+++S I ++PY+++ EK QSL E
Sbjct: 197 LLNGENMIISLPTGAGKTLIAEVLMIHEAIIRKRSCILMVPYVAVAQEKVQSLCIFEESL 256
Query: 61 KFYLE 65
+E
Sbjct: 257 PLLIE 261
>gi|119626341|gb|EAX05936.1| DNA helicase HEL308, isoform CRA_c [Homo sapiens]
Length = 541
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY-QSLAKAAEEFK 61
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKVCVCLSSFGIELG 410
Query: 62 FYLE 65
F++E
Sbjct: 411 FFVE 414
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY-QSLAKAAEEFK 131
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKVCVCLSSFGIELG 410
Query: 132 FYLE 135
F++E
Sbjct: 411 FFVE 414
>gi|209882713|ref|XP_002142792.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558398|gb|EEA08443.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 1139
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
++Q KN + S PTSGGKTLV E+L+ + + +++SA+ ILP++SLV EK ++ A
Sbjct: 82 VLQGKNLIYSAPTSGGKTLVSELLMFRTVTKRRRSALVILPFVSLVSEKCKNYYDAG 138
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57
++Q KN + S PTSGGKTLV E+L+ + + +++SA+ ILP++SLV EK ++ A
Sbjct: 82 VLQGKNLIYSAPTSGGKTLVSELLMFRTVTKRRRSALVILPFVSLVSEKCKNYYDAG 138
>gi|449275810|gb|EMC84578.1| Helicase POLQ-like protein, partial [Columba livia]
Length = 888
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY SL F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 28 VLEKYHSLGVVQ---MFEWQAECLMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLET 84
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
+K A+ ILP++S+ EK L +E +E
Sbjct: 85 RKKALLILPFVSVAKEKKCYLQALFQEVDVRVE 117
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+ ILP++S+ EK L +E
Sbjct: 53 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALLILPFVSVAKEKKCYLQALFQEV 112
Query: 61 KFYLEGKCLEMI 72
+EG M+
Sbjct: 113 DVRVEGYMGSMV 124
>gi|395844785|ref|XP_003795132.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta [Otolemur
garnettii]
Length = 2588
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 86 VLEKYHSFGVKK---MFQWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 142
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K +FILP++S+ EK K+YL+ L
Sbjct: 143 RKKVLFILPFVSVAKEK-----------KYYLQSL 166
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K +FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKVLFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GIKVDG 176
>gi|294876654|ref|XP_002767737.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
gi|239869579|gb|EER00455.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
Length = 235
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK---YQSLAKAAE 58
++N + PTSGGKTLV EI++++ L + A+F+LPYIS+V EK QSL ++A+
Sbjct: 41 HRNLIYCAPTSGGKTLVSEIVMLRRLAGDGRRALFVLPYISVVSEKEAYLQSLCRSAQ 98
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK---YQSLAKAAE 128
++N + PTSGGKTLV EI++++ L + A+F+LPYIS+V EK QSL ++A+
Sbjct: 41 HRNLIYCAPTSGGKTLVSEIVMLRRLAGDGRRALFVLPYISVVSEKEAYLQSLCRSAQ 98
>gi|167521806|ref|XP_001745241.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776199|gb|EDQ89819.1| predicted protein [Monosiga brevicollis MX1]
Length = 438
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 68 CL-EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126
CL E+ N + S+PTSGGKTLV E+ + + ++++ +F++PY+SLVHE+ +L +
Sbjct: 13 CLRELRAGHNLLYSVPTSGGKTLVAELWALHNVLVRRRDVLFMVPYVSLVHERAMALEQL 72
Query: 127 A 127
A
Sbjct: 73 A 73
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 38/52 (73%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57
N + S+PTSGGKTLV E+ + + ++++ +F++PY+SLVHE+ +L + A
Sbjct: 22 NLLYSVPTSGGKTLVAELWALHNVLVRRRDVLFMVPYVSLVHERAMALEQLA 73
>gi|170573699|ref|XP_001892566.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
gi|158601798|gb|EDP38603.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
Length = 845
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 24 LIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLE---MIQNKNCVLS 80
L+++ LK+ + I + E +Q+ + + +CL +I KN +LS
Sbjct: 72 LLLERLKVMRTGKWRIFVRFTGTCEIFQNFT---DTLFLDWQNQCLNDEHLISGKNMILS 128
Query: 81 IPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
+ T GKTLV EI++++EL +++S I ++PY+++ EK SL+ ++F +E
Sbjct: 129 MTTGAGKTLVAEIVMLRELINRRRSCILVVPYVAIAQEKVYSLSLFEDKFNICIE 183
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ KN +LS+ T GKTLV EI++++EL +++S I ++PY+++ EK SL+ ++F
Sbjct: 119 LISGKNMILSMTTGAGKTLVAEIVMLRELINRRRSCILVVPYVAIAQEKVYSLSLFEDKF 178
Query: 61 KFYLE 65
+E
Sbjct: 179 NICIE 183
>gi|350418478|ref|XP_003491870.1| PREDICTED: DNA polymerase theta-like [Bombus impatiens]
Length = 2240
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL + +N+N V S PTS GKTLV EIL++K + ++K IFILP++S+V
Sbjct: 248 FDWQTECLSNHKIIEENRNLVYSAPTSAGKTLVAEILMIKTVLERRKKVIFILPFVSVVR 307
Query: 118 EK 119
EK
Sbjct: 308 EK 309
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+N+N V S PTS GKTLV EIL++K + ++K IFILP++S+V EK
Sbjct: 263 ENRNLVYSAPTSAGKTLVAEILMIKTVLERRKKVIFILPFVSVVREK 309
>gi|327296790|ref|XP_003233089.1| DNA-directed DNA polymerase theta [Trichophyton rubrum CBS 118892]
gi|326464395|gb|EGD89848.1| DNA-directed DNA polymerase theta [Trichophyton rubrum CBS 118892]
Length = 922
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H KY ++ A + + CL + KN V S PT GGK+L
Sbjct: 103 PILSLSHPKYGLPTALVKNFASLGVNAIYPWQASCLLGRGHLSGEKNLVYSAPTGGGKSL 162
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 163 VADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 202
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
KN V S PT GGK+LV ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 148 KNLVYSAPTGGGKSLVADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 202
>gi|302666763|ref|XP_003024978.1| hypothetical protein TRV_00899 [Trichophyton verrucosum HKI 0517]
gi|291189056|gb|EFE44367.1| hypothetical protein TRV_00899 [Trichophyton verrucosum HKI 0517]
Length = 495
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H KY ++ A + + CL + KN V S PT GGK+L
Sbjct: 101 PILSLSHPKYGLPTALVKNFASLGVNAIYPWQASCLLGRGHLSGEKNLVYSAPTGGGKSL 160
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 161 VADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 200
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
KN V S PT GGK+LV ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 146 KNLVYSAPTGGGKSLVADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 200
>gi|302511565|ref|XP_003017734.1| hypothetical protein ARB_04617 [Arthroderma benhamiae CBS 112371]
gi|291181305|gb|EFE37089.1| hypothetical protein ARB_04617 [Arthroderma benhamiae CBS 112371]
Length = 497
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H KY ++ A + + CL + KN V S PT GGK+L
Sbjct: 101 PILSLSHPKYGLPTALVKNFASLGVNAIYPWQASCLLGRGHLSGEKNLVYSAPTGGGKSL 160
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 161 VADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 200
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
KN V S PT GGK+LV ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 146 KNLVYSAPTGGGKSLVADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 200
>gi|340722505|ref|XP_003399645.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Bombus
terrestris]
Length = 2005
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL + +N+N V S PTS GKTLV EIL++K + ++K IFILP++S+V
Sbjct: 248 FDWQTECLSNHKIIEENRNLVYSAPTSAGKTLVAEILMIKTVLERRKKVIFILPFVSVVR 307
Query: 118 EK 119
EK
Sbjct: 308 EK 309
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+N+N V S PTS GKTLV EIL++K + ++K IFILP++S+V EK
Sbjct: 263 ENRNLVYSAPTSAGKTLVAEILMIKTVLERRKKVIFILPFVSVVREK 309
>gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2382
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F + +CL +++Q N V S PTS GKTLV E+L++K + ++ A+ ILP++S+ E
Sbjct: 32 FEWQAQCLTVGQVLQGANLVYSAPTSAGKTLVSELLMLKRVLETKRKALLILPFVSVAKE 91
Query: 119 KYQSLAKAAEE 129
K L EE
Sbjct: 92 KMHYLQSVFEE 102
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++Q N V S PTS GKTLV E+L++K + ++ A+ ILP++S+ EK L EE
Sbjct: 44 VLQGANLVYSAPTSAGKTLVSELLMLKRVLETKRKALLILPFVSVAKEKMHYLQSVFEEA 103
Query: 61 KFYLEG 66
+EG
Sbjct: 104 GVRVEG 109
>gi|326481273|gb|EGE05283.1| DNA-directed DNA polymerase theta [Trichophyton equinum CBS 127.97]
Length = 920
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H KY + F + + CL + KN V S PT GGK+L
Sbjct: 103 PILSLSHPKYGLPTALVKNFSSLGVNAIYPWQASCLLGRGHLSGEKNLVYSAPTGGGKSL 162
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 163 VADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 202
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
KN V S PT GGK+LV ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 148 KNLVYSAPTGGGKSLVADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 202
>gi|326476031|gb|EGE00041.1| DNA-directed DNA polymerase theta [Trichophyton tonsurans CBS
112818]
Length = 920
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H KY + F + + CL + KN V S PT GGK+L
Sbjct: 103 PILSLSHPKYGLPTALVKNFSSLGVNAIYPWQASCLLGRGHLSGEKNLVYSAPTGGGKSL 162
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 163 VADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 202
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
KN V S PT GGK+LV ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 148 KNLVYSAPTGGGKSLVADVLMLKRILTCPDKKAILVLPYVALVQEKLKWLRRVVE 202
>gi|345796069|ref|XP_545125.3| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta [Canis lupus
familiaris]
Length = 2596
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S + F + +CL ++++ KN V S PTS GKTLV E+L++K +
Sbjct: 85 VLEKYHSYGV---KRMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLMLKRVLEM 141
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 142 RKKALFILPFVSVAKEK-----------KYYLQSL 165
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+L++K + +K A+FILP++S+ EK L +E
Sbjct: 110 VLEGKNLVYSAPTSAGKTLVAELLMLKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEI 169
Query: 61 KFYLEG 66
++G
Sbjct: 170 GINVDG 175
>gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator]
Length = 1937
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCL---EMIQNK-NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL ++IQ K N V S PTS GKTLV EIL++K + +QK IFILP++S+V
Sbjct: 2 FAWQMECLSNHKIIQEKQNLVYSAPTSAGKTLVAEILLIKTVLERQKKVIFILPFVSVVR 61
Query: 118 EK 119
EK
Sbjct: 62 EK 63
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ +N V S PTS GKTLV EIL++K + +QK IFILP++S+V EK
Sbjct: 17 EKQNLVYSAPTSAGKTLVAEILLIKTVLERQKKVIFILPFVSVVREK 63
>gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
Length = 1712
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK---YQSLAKAAE 58
++N + PTSGGKTLV EI++++ L + A+F+LPYIS+V EK QSL ++A+
Sbjct: 41 HRNLIYCAPTSGGKTLVSEIVMLRRLAGDGRRALFVLPYISVVSEKEAYLQSLCRSAQ 98
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK---YQSLAKAAE 128
++N + PTSGGKTLV EI++++ L + A+F+LPYIS+V EK QSL ++A+
Sbjct: 41 HRNLIYCAPTSGGKTLVSEIVMLRRLAGDGRRALFVLPYISVVSEKEAYLQSLCRSAQ 98
>gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum]
gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum]
Length = 1588
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ NKN V S PTS GKTLV EIL +K + + K IFILP++S+V EK
Sbjct: 221 LTMNKNLVYSAPTSAGKTLVAEILSIKTVLERSKKVIFILPFVSVVREK 269
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ NKN V S PTS GKTLV EIL +K + + K IFILP++S+V EK
Sbjct: 221 LTMNKNLVYSAPTSAGKTLVAEILSIKTVLERSKKVIFILPFVSVVREK 269
>gi|401422585|ref|XP_003875780.1| DNA polymerase theta (helicase domain only),putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322492019|emb|CBZ27293.1| DNA polymerase theta (helicase domain only),putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1882
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q N V S+PTSGGKTLV E+ +++ + ++KS +LP++SL EK +L A + F
Sbjct: 895 QGGNFVYSLPTSGGKTLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLATAYDF 954
Query: 63 YLEG 66
++G
Sbjct: 955 NVDG 958
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
E+ Q N V S+PTSGGKTLV E+ +++ + ++KS +LP++SL EK +L A
Sbjct: 892 EVRQGGNFVYSLPTSGGKTLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLATA 951
Query: 130 FKFYLE 135
+ F ++
Sbjct: 952 YDFNVD 957
>gi|428179719|gb|EKX48589.1| hypothetical protein GUITHDRAFT_162401 [Guillardia theta CCMP2712]
Length = 2380
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + N V S PTSGGKTLV EIL ++ L + ++ +F++PY+SLV EK + + +
Sbjct: 221 LSRRTNLVYSAPTSGGKTLVAEILTIRCLLLTKRRVLFVVPYVSLVLEKVEYFRELLQGE 280
Query: 61 KFYLEGKC 68
+ +EG C
Sbjct: 281 EVRVEGYC 288
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
N V S PTSGGKTLV EIL ++ L + ++ +F++PY+SLV EK +
Sbjct: 226 NLVYSAPTSGGKTLVAEILTIRCLLLTKRRVLFVVPYVSLVLEKVE 271
>gi|390475462|ref|XP_002807658.2| PREDICTED: DNA polymerase theta-like [Callithrix jacchus]
Length = 2414
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 14/79 (17%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F + +CL ++++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ E
Sbjct: 99 FEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKE 158
Query: 119 KYQSLAKAAEEFKFYLEVL 137
K K+YL+ L
Sbjct: 159 K-----------KYYLQSL 166
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GIKVDG 176
>gi|296811628|ref|XP_002846152.1| DNA polymerase theta isoform 2 [Arthroderma otae CBS 113480]
gi|238843540|gb|EEQ33202.1| DNA polymerase theta isoform 2 [Arthroderma otae CBS 113480]
Length = 867
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P ++L H KY ++ A + + CL + KN V S PT GGK+L
Sbjct: 104 PVLALSHPKYGLPTALVKNFASLGVNAIYPWQASCLLGRGHLSGEKNLVYSAPTGGGKSL 163
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 164 VADVLMLKRILNCPDKKAILVLPYVALVQEKLKWLRRVVE 203
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
KN V S PT GGK+LV ++L++K L K AI +LPY++LV EK + L + E
Sbjct: 149 KNLVYSAPTGGGKSLVADVLMLKRILNCPDKKAILVLPYVALVQEKLKWLRRVVE 203
>gi|27464955|gb|AAN64235.1| DNA polymerase theta isoform 1 [Mus musculus]
gi|27464983|gb|AAN64236.1| DNA polymerase theta isoform 2 [Mus musculus]
Length = 177
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 8 VLSIPTS--GGKTLVGEILIMKELKIKQKSAIFILPY--ISLVHEKYQSLAKAAEEFKFY 63
VLS P G+ L G + + Q + + + V EKY S F
Sbjct: 37 VLSPPPGLGRGRRLTGTGTNKRRVSDDQIDQLLLANWGLPKAVLEKYHSFGVRK---MFE 93
Query: 64 LEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ +CL +++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK
Sbjct: 94 WQAECLLLGHVLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEK 152
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK
Sbjct: 104 VLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEK 152
>gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus]
Length = 1821
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
M + KN + S PTS GKTLV EIL++K + ++K IFILP++S+V EK +
Sbjct: 241 MQERKNLIYSAPTSAGKTLVAEILLIKTILERRKKVIFILPFVSVVREKMYYFKDLLSDI 300
Query: 61 KFYLEG 66
+EG
Sbjct: 301 GIRVEG 306
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL M + KN + S PTS GKTLV EIL++K + ++K IFILP++S+V
Sbjct: 228 FTWQMECLSNHQVMQERKNLIYSAPTSAGKTLVAEILLIKTILERRKKVIFILPFVSVVR 287
Query: 118 EK 119
EK
Sbjct: 288 EK 289
>gi|348529422|ref|XP_003452212.1| PREDICTED: DNA polymerase theta [Oreochromis niloticus]
Length = 2407
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F + +CL ++++ N V S PTS GKTLV E+L++K + ++ A+FILP++S+ E
Sbjct: 261 FEWQAQCLAVGQVLRGGNLVYSAPTSAGKTLVSELLMLKRVLETKRKALFILPFVSVAKE 320
Query: 119 KYQSLAKAAEE 129
K L EE
Sbjct: 321 KMHYLQSIFEE 331
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ N V S PTS GKTLV E+L++K + ++ A+FILP++S+ EK L EE
Sbjct: 273 VLRGGNLVYSAPTSAGKTLVSELLMLKRVLETKRKALFILPFVSVAKEKMHYLQSIFEEA 332
Query: 61 KFYLEG 66
+EG
Sbjct: 333 GVRVEG 338
>gi|303322945|ref|XP_003071464.1| DNA polymerase theta, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240111166|gb|EER29319.1| DNA polymerase theta, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320033458|gb|EFW15406.1| DNA-directed DNA polymerase theta [Coccidioides posadasii str.
Silveira]
Length = 937
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKY---QSLAKAAEEFK----FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H KY +SL E+ + + CL + KN V S PT GGK+L
Sbjct: 120 PLLSLRHPKYGLPESLVTNFEKLGVNCIYPWQASCLLGRGHLTAEKNLVYSAPTGGGKSL 179
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K + K AI +LPY+++V EK + L + E
Sbjct: 180 VADVLMLKRIIDDPHKKAILVLPYVAIVQEKLKWLRRLVE 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN V S PT GGK+LV ++L++K + K AI +LPY+++V EK + L + E
Sbjct: 161 LTAEKNLVYSAPTGGGKSLVADVLMLKRIIDDPHKKAILVLPYVAIVQEKLKWLRRLVE 219
>gi|66358840|ref|XP_626598.1| DEXDc+HELICc, mus308/POLQ like SFII DNA helicase, no polymerase
domain [Cryptosporidium parvum Iowa II]
gi|46227703|gb|EAK88623.1| DEXDc+HELICc, mus308/POLQ like SFII DNA helicase, no polymerase
domain [Cryptosporidium parvum Iowa II]
Length = 1154
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++Q +N V S PTSGGKTLV E+L+ K + ++A+ + P++SLV EK S KA E
Sbjct: 152 VLQGRNLVYSAPTSGGKTLVSELLMYKRVLEGGRAALVVFPFVSLVSEKRDSYYKAGGE 210
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
++Q +N V S PTSGGKTLV E+L+ K + ++A+ + P++SLV EK S KA E
Sbjct: 152 VLQGRNLVYSAPTSGGKTLVSELLMYKRVLEGGRAALVVFPFVSLVSEKRDSYYKAGGE 210
>gi|67619641|ref|XP_667658.1| DNA helicase HEL308 [Cryptosporidium hominis TU502]
gi|54658820|gb|EAL37435.1| DNA helicase HEL308 [Cryptosporidium hominis]
Length = 1153
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++Q +N V S PTSGGKTLV E+L+ K + ++A+ + P++SLV EK S KA E
Sbjct: 152 VLQGRNLVYSAPTSGGKTLVSELLMYKRVLEGGRAALVVFPFVSLVSEKRDSYYKAGGE 210
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
++Q +N V S PTSGGKTLV E+L+ K + ++A+ + P++SLV EK S KA E
Sbjct: 152 VLQGRNLVYSAPTSGGKTLVSELLMYKRVLEGGRAALVVFPFVSLVSEKRDSYYKAGGE 210
>gi|392868317|gb|EAS34087.2| DNA-directed DNA polymerase theta [Coccidioides immitis RS]
Length = 937
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKY---QSLAKAAEEFK----FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H KY +SL E+ + + CL + KN V S PT GGK+L
Sbjct: 120 PLLSLRHPKYGLPESLVANFEKLGVNCIYPWQASCLLGRGHLTAEKNLVYSAPTGGGKSL 179
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K + K AI +LPY+++V EK + L + E
Sbjct: 180 VADVLMLKRIIDDPHKKAILVLPYVAIVQEKLKWLRRLVE 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN V S PT GGK+LV ++L++K + K AI +LPY+++V EK + L + E
Sbjct: 161 LTAEKNLVYSAPTGGGKSLVADVLMLKRIIDDPHKKAILVLPYVAIVQEKLKWLRRLVE 219
>gi|407394203|gb|EKF26841.1| RNA helicase, putative [Trypanosoma cruzi marinkellei]
Length = 501
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG 66
V S+PTSGGKTLV EI +++ L ++KS F+LP++SL EK L + F ++G
Sbjct: 239 VYSLPTSGGKTLVAEISLLRCLLNRKKSCFFVLPFVSLAEEKAMGLRPFGDALGFVVDG 297
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
V S+PTSGGKTLV EI +++ L ++KS F+LP++SL EK L + F ++
Sbjct: 239 VYSLPTSGGKTLVAEISLLRCLLNRKKSCFFVLPFVSLAEEKAMGLRPFGDALGFVVD 296
>gi|302414602|ref|XP_003005133.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261356202|gb|EEY18630.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 866
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P++SL H Y + AK + + CL +I KN + S PT GGK+L
Sbjct: 104 PFLSLAHTVYGLPRPLIHNFAKLGIHSIYPWQKACLLGPGLLIGEKNLIYSAPTGGGKSL 163
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
V ++L++K L+ K AI +LPY++LV EK + L
Sbjct: 164 VADVLMLKRVLEDKDAKAILVLPYVALVQEKVRWL 198
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 53
++ KN + S PT GGK+LV ++L++K L+ K AI +LPY++LV EK + L
Sbjct: 145 LIGEKNLIYSAPTGGGKSLVADVLMLKRVLEDKDAKAILVLPYVALVQEKVRWL 198
>gi|410970532|ref|XP_003991733.1| PREDICTED: DNA polymerase theta [Felis catus]
Length = 2597
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 36 AIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGE 92
A + LP + V EKY S F + +CL ++++ KN V S PTS GKTLV E
Sbjct: 78 ANWGLP--AAVLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAE 132
Query: 93 ILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+L++K + +K A+FILP++S+ EK K+YL+ L
Sbjct: 133 LLMLKRVLEMRKKALFILPFVSVAKEK-----------KYYLQSL 166
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+L++K + +K A+FILP++S+ EK L +E
Sbjct: 111 VLEGKNLVYSAPTSAGKTLVAELLMLKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 170
Query: 61 KFYLEG 66
++G
Sbjct: 171 GINVDG 176
>gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior]
Length = 2176
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
+KY +A EE F + +CL M + KN V S PTS GKT V E+L++K + K+
Sbjct: 214 QKY--IAHGVEEM-FTWQMECLSNDLVMQERKNLVYSAPTSAGKTFVAEMLLIKTVLEKK 270
Query: 104 KSAIFILPYISLVHEK 119
K IFILP++S+V EK
Sbjct: 271 KKVIFILPFVSVVREK 286
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
M + KN V S PTS GKT V E+L++K + K+K IFILP++S+V EK
Sbjct: 238 MQERKNLVYSAPTSAGKTFVAEMLLIKTVLEKKKKVIFILPFVSVVREK 286
>gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like
[Ailuropoda melanoleuca]
Length = 2634
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 19/105 (18%)
Query: 36 AIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGE 92
A + LP L EKY S F + +CL ++++ KN V S PTS GKTLV E
Sbjct: 117 ANWGLPVAVL--EKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAE 171
Query: 93 ILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+L++K + +K A+FILP++S+ EK K+YL+ L
Sbjct: 172 LLMLKRVLEMRKKALFILPFVSVAKEK-----------KYYLQSL 205
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+L++K + +K A+FILP++S+ EK L +E
Sbjct: 150 VLEGKNLVYSAPTSAGKTLVAELLMLKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 209
Query: 61 KFYLEG 66
++G
Sbjct: 210 GINVDG 215
>gi|240279802|gb|EER43307.1| DNA polymerase I [Ajellomyces capsulatus H143]
Length = 941
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H+ Y + F + + CL + KN V S PT GGK+L
Sbjct: 131 PLLSLSHQSYGLPPQLVANFASLGVNCIYPWQASCLLGRGHLTAEKNLVYSAPTGGGKSL 190
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K ++ K AI +LPY++LV EK + L + E
Sbjct: 191 VADVLMLKRVIEDPAKRAILVLPYVALVQEKLKWLRRVVE 230
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN V S PT GGK+LV ++L++K ++ K AI +LPY++LV EK + L + E
Sbjct: 172 LTAEKNLVYSAPTGGGKSLVADVLMLKRVIEDPAKRAILVLPYVALVQEKLKWLRRVVE 230
>gi|225562983|gb|EEH11262.1| helicase and polymerase containing protein tebichi [Ajellomyces
capsulatus G186AR]
Length = 958
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H+ Y + F + + CL + KN V S PT GGK+L
Sbjct: 121 PLLSLSHQSYGLPPQLVANFASLGVNCIYPWQASCLLGRGHLTAEKNLVYSAPTGGGKSL 180
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K ++ K AI +LPY++LV EK + L + E
Sbjct: 181 VADVLMLKRVIEDPAKRAILVLPYVALVQEKLKWLRRVVE 220
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN V S PT GGK+LV ++L++K ++ K AI +LPY++LV EK + L + E
Sbjct: 162 LTAEKNLVYSAPTGGGKSLVADVLMLKRVIEDPAKRAILVLPYVALVQEKLKWLRRVVE 220
>gi|327354466|gb|EGE83323.1| DNA-directed DNA polymerase theta [Ajellomyces dermatitidis ATCC
18188]
Length = 757
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H+ Y + F + + CL + KN V S PT GGK+L
Sbjct: 122 PLLSLSHQTYGLPPQLVTNFASLGVNCIYPWQASCLLGRGHLTAEKNLVYSAPTGGGKSL 181
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K + K AI +LPY++LV EK + L + E
Sbjct: 182 VADVLMLKRVIDDPSKKAILVLPYVALVQEKLKWLRRVVE 221
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN V S PT GGK+LV ++L++K + K AI +LPY++LV EK + L + E
Sbjct: 163 LTAEKNLVYSAPTGGGKSLVADVLMLKRVIDDPSKKAILVLPYVALVQEKLKWLRRVVE 221
>gi|261188418|ref|XP_002620624.1| DNA-directed DNA polymerase theta [Ajellomyces dermatitidis
SLH14081]
gi|239593224|gb|EEQ75805.1| DNA-directed DNA polymerase theta [Ajellomyces dermatitidis
SLH14081]
Length = 935
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H+ Y + F + + CL + KN V S PT GGK+L
Sbjct: 122 PLLSLSHQTYGLPPQLVTNFASLGVNCIYPWQASCLLGRGHLTAEKNLVYSAPTGGGKSL 181
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K + K AI +LPY++LV EK + L + E
Sbjct: 182 VADVLMLKRVIDDPSKKAILVLPYVALVQEKLKWLRRVVE 221
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN V S PT GGK+LV ++L++K + K AI +LPY++LV EK + L + E
Sbjct: 163 LTAEKNLVYSAPTGGGKSLVADVLMLKRVIDDPSKKAILVLPYVALVQEKLKWLRRVVE 221
>gi|325092933|gb|EGC46243.1| DNA-directed DNA polymerase theta [Ajellomyces capsulatus H88]
Length = 934
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H+ Y + F + + CL + KN V S PT GGK+L
Sbjct: 121 PLLSLSHQSYGLPPQLVANFASLGVNCIYPWQASCLLGRGHLTAEKNLVYSAPTGGGKSL 180
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K ++ K AI +LPY++LV EK + L + E
Sbjct: 181 VADVLMLKRVIEDPAKRAILVLPYVALVQEKLKWLRRVVE 220
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN V S PT GGK+LV ++L++K ++ K AI +LPY++LV EK + L + E
Sbjct: 162 LTAEKNLVYSAPTGGGKSLVADVLMLKRVIEDPAKRAILVLPYVALVQEKLKWLRRVVE 220
>gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera]
Length = 1864
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCL--EMIQNKNC--VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL + + KNC V S PTS GKTL+ EIL++K + +QK IFILP++S+V
Sbjct: 121 FAWQVECLSNQKVIEKNCNLVYSAPTSAGKTLIAEILMIKTVLERQKKVIFILPFVSVVR 180
Query: 118 EK 119
EK
Sbjct: 181 EK 182
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+N N V S PTS GKTL+ EIL++K + +QK IFILP++S+V EK
Sbjct: 136 KNCNLVYSAPTSAGKTLIAEILMIKTVLERQKKVIFILPFVSVVREK 182
>gi|239609367|gb|EEQ86354.1| DNA-directed DNA polymerase theta [Ajellomyces dermatitidis ER-3]
Length = 917
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H+ Y + F + + CL + KN V S PT GGK+L
Sbjct: 122 PLLSLSHQTYGLPPQLVTNFASLGVNCIYPWQASCLLGRGHLTAEKNLVYSAPTGGGKSL 181
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K + K AI +LPY++LV EK + L + E
Sbjct: 182 VADVLMLKRVIDDPSKKAILVLPYVALVQEKLKWLRRVVE 221
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN V S PT GGK+LV ++L++K + K AI +LPY++LV EK + L + E
Sbjct: 163 LTAEKNLVYSAPTGGGKSLVADVLMLKRVIDDPSKKAILVLPYVALVQEKLKWLRRVVE 221
>gi|449662053|ref|XP_002164745.2| PREDICTED: DNA polymerase theta-like [Hydra magnipapillata]
Length = 1898
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 38 FILPYISLVHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEIL 94
F LP + V EKY+ K E F + +CL + ++ N V S PTS GKTLV E+L
Sbjct: 126 FDLP--TTVIEKYK---KNGIESLFLWQKECLLTGKALEGGNLVYSAPTSAGKTLVAELL 180
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++K + +K I+ILP++S+ EK SL E+
Sbjct: 181 MLKRVLKTRKKVIYILPFVSVAREKVYSLRDQFED 215
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S PTS GKTLV E+L++K + +K I+ILP++S+ EK SL E+ +
Sbjct: 162 NLVYSAPTSAGKTLVAELLMLKRVLKTRKKVIYILPFVSVAREKVYSLRDQFEDSGITIG 221
Query: 66 G 66
G
Sbjct: 222 G 222
>gi|398015736|ref|XP_003861057.1| DNA polymerase theta (helicase domain only), putative [Leishmania
donovani]
gi|322499281|emb|CBZ34354.1| DNA polymerase theta (helicase domain only), putative [Leishmania
donovani]
Length = 2240
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q N V S+PTSGGKTLV E+ +++ + ++KS +LP++SL EK +L + F
Sbjct: 1264 QGGNFVYSLPTSGGKTLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLTTAYDF 1323
Query: 63 YLEG 66
++G
Sbjct: 1324 NVDG 1327
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
E+ Q N V S+PTSGGKTLV E+ +++ + ++KS +LP++SL EK +L
Sbjct: 1261 EVRQGGNFVYSLPTSGGKTLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLTTA 1320
Query: 130 FKFYLE 135
+ F ++
Sbjct: 1321 YDFNVD 1326
>gi|146087487|ref|XP_001465838.1| putative DNA polymerase theta (helicase domain only) [Leishmania
infantum JPCM5]
gi|134069938|emb|CAM68267.1| putative DNA polymerase theta (helicase domain only) [Leishmania
infantum JPCM5]
Length = 2240
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q N V S+PTSGGKTLV E+ +++ + ++KS +LP++SL EK +L + F
Sbjct: 1264 QGGNFVYSLPTSGGKTLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLTTAYDF 1323
Query: 63 YLEG 66
++G
Sbjct: 1324 NVDG 1327
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
E+ Q N V S+PTSGGKTLV E+ +++ + ++KS +LP++SL EK +L
Sbjct: 1261 EVRQGGNFVYSLPTSGGKTLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLTTA 1320
Query: 130 FKFYLE 135
+ F ++
Sbjct: 1321 YDFNVD 1326
>gi|157869866|ref|XP_001683484.1| putative DNA polymerase theta [Leishmania major strain Friedlin]
gi|68126549|emb|CAJ04910.1| putative DNA polymerase theta [Leishmania major strain Friedlin]
Length = 1881
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q N V S+PTSGGKTLV E+ +++ + ++KS +LP++SL EK +L + F
Sbjct: 884 QGGNFVYSLPTSGGKTLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLTTAYDF 943
Query: 63 YLEG 66
++G
Sbjct: 944 NVDG 947
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
E+ Q N V S+PTSGGKTLV E+ +++ + ++KS +LP++SL EK +L
Sbjct: 881 EVRQGGNFVYSLPTSGGKTLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLTTA 940
Query: 130 FKFYLE 135
+ F ++
Sbjct: 941 YDFNVD 946
>gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
Length = 2215
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F + +CL +++ KN V S PTS GKT+V E+L++K + K IFILP++S+ E
Sbjct: 25 FEWQAECLRTGDVLAGKNLVYSAPTSAGKTMVAELLMLKRVLETHKKGIFILPFVSVARE 84
Query: 119 K 119
K
Sbjct: 85 K 85
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ KN V S PTS GKT+V E+L++K + K IFILP++S+ EK
Sbjct: 37 VLAGKNLVYSAPTSAGKTMVAELLMLKRVLETHKKGIFILPFVSVAREK 85
>gi|407867736|gb|EKG08646.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 998
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG 66
V S+PTSGGKTLV EI +++ L ++KS F+LP++SL EK L + F ++G
Sbjct: 240 VYSLPTSGGKTLVAEISLLRCLLNRKKSCFFVLPFVSLAEEKAVGLRPFGDALGFAVDG 298
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
V S+PTSGGKTLV EI +++ L ++KS F+LP++SL EK L + F ++
Sbjct: 240 VYSLPTSGGKTLVAEISLLRCLLNRKKSCFFVLPFVSLAEEKAVGLRPFGDALGFAVD 297
>gi|71652688|ref|XP_814995.1| DNA polymerase theta (helicase domain only) [Trypanosoma cruzi
strain CL Brener]
gi|70880017|gb|EAN93144.1| DNA polymerase theta (helicase domain only), putative [Trypanosoma
cruzi]
Length = 998
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG 66
V S+PTSGGKTLV EI +++ L ++KS F+LP++SL EK L + F ++G
Sbjct: 240 VYSLPTSGGKTLVAEISLLRCLLNRKKSCFFVLPFVSLAEEKAVGLRPFGDALGFAVDG 298
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
V S+PTSGGKTLV EI +++ L ++KS F+LP++SL EK L + F ++
Sbjct: 240 VYSLPTSGGKTLVAEISLLRCLLNRKKSCFFVLPFVSLAEEKAVGLRPFGDALGFAVD 297
>gi|313243930|emb|CBY14815.1| unnamed protein product [Oikopleura dioica]
Length = 603
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 68 CLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
CL M I++ N + S+PTS GK+LV E+ +++ L ++ K+ I +LP++S+V EK SL+
Sbjct: 148 CLRMKKVIKSANLIFSLPTSAGKSLVAEVHLLRHL-LEGKNGILVLPFVSIVQEKVASLS 206
Query: 125 KAAEEF--KFYLE 135
A E KF +E
Sbjct: 207 AIASETGQKFVVE 219
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++++ N + S+PTS GK+LV E+ +++ L ++ K+ I +LP++S+V EK SL+ A E
Sbjct: 154 VIKSANLIFSLPTSAGKSLVAEVHLLRHL-LEGKNGILVLPFVSIVQEKVASLSAIASET 212
Query: 61 --KFYLE 65
KF +E
Sbjct: 213 GQKFVVE 219
>gi|347842514|emb|CCD57086.1| hypothetical protein [Botryotinia fuckeliana]
Length = 805
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P + L H YQ + E F + + +CL + + +N V + PT GGK+L
Sbjct: 317 PLLDLSHPAYQLPNQLVENFAALGIKSIYPWQSECLLRSGALARQRNLVYTAPTGGGKSL 376
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K ++ +K A+ +LPY++LV EK + L + +
Sbjct: 377 VADVLMLKNVIQNPEKKALLVLPYVALVQEKLRWLRRIVQ 416
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ + +N V + PT GGK+LV ++L++K ++ +K A+ +LPY++LV EK + L + +
Sbjct: 358 LARQRNLVYTAPTGGGKSLVADVLMLKNVIQNPEKKALLVLPYVALVQEKLRWLRRIVQ 416
>gi|383861260|ref|XP_003706104.1| PREDICTED: DNA polymerase theta-like [Megachile rotundata]
Length = 1983
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
N V S PTS GKTLV EIL++K + + K AIFILP++S+V EK
Sbjct: 234 NLVYSAPTSAGKTLVAEILMIKTILERHKKAIFILPFVSVVREK 277
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
N V S PTS GKTLV EIL++K + + K AIFILP++S+V EK
Sbjct: 234 NLVYSAPTSAGKTLVAEILMIKTILERHKKAIFILPFVSVVREK 277
>gi|443695787|gb|ELT96621.1| hypothetical protein CAPTEDRAFT_226809 [Capitella teleta]
Length = 1818
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 2 VQNK-----NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56
VQN+ N V S PTS GKT+V E+L++K ++ AIFILP++S+V EK L
Sbjct: 19 VQNRMSDGGNLVYSAPTSAGKTMVAELLMLKRFLRTKRKAIFILPFVSVVREKVHYLQDM 78
Query: 57 AEEFKFYLEG 66
++ ++G
Sbjct: 79 FQDAGVRVDG 88
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 72 IQNK-----NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+QN+ N V S PTS GKT+V E+L++K ++ AIFILP++S+V EK L
Sbjct: 19 VQNRMSDGGNLVYSAPTSAGKTMVAELLMLKRFLRTKRKAIFILPFVSVVREKVHYL 75
>gi|154297658|ref|XP_001549255.1| hypothetical protein BC1G_12674 [Botryotinia fuckeliana B05.10]
Length = 762
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P + L H YQ + E F + + +CL + + +N V + PT GGK+L
Sbjct: 58 PLLDLSHPAYQLPNQLVENFAALGIKSIYSWQSECLLRSGALARQRNLVYTAPTGGGKSL 117
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L++K ++ +K A+ +LPY++LV EK + L + +
Sbjct: 118 VADVLMLKNVIQNPEKKALLVLPYVALVQEKLRWLRRIVQ 157
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ + +N V + PT GGK+LV ++L++K ++ +K A+ +LPY++LV EK + L + +
Sbjct: 99 LARQRNLVYTAPTGGGKSLVADVLMLKNVIQNPEKKALLVLPYVALVQEKLRWLRRIVQ 157
>gi|380012133|ref|XP_003690142.1| PREDICTED: DNA polymerase theta-like [Apis florea]
Length = 1769
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCL--EMIQNKNC--VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL + + KNC V S PTS GKTL+ EIL++K + ++K IFILP++S+V
Sbjct: 121 FAWQVECLSNQKVIEKNCNLVYSAPTSAGKTLIAEILMIKTVLERRKKVIFILPFVSVVR 180
Query: 118 EK 119
EK
Sbjct: 181 EK 182
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+N N V S PTS GKTL+ EIL++K + ++K IFILP++S+V EK
Sbjct: 136 KNCNLVYSAPTSAGKTLIAEILMIKTVLERRKKVIFILPFVSVVREK 182
>gi|313221958|emb|CBY38997.1| unnamed protein product [Oikopleura dioica]
Length = 886
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 68 CLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
CL M I++ N + S+PTS GK+LV E+ +++ L ++ K+ + +LP++S+V EK SL+
Sbjct: 148 CLRMKKVIKSANLIFSLPTSAGKSLVAEVHLLRHL-LEGKNGLLVLPFVSIVQEKVASLS 206
Query: 125 KAAEEF--KFYLE 135
A E KF +E
Sbjct: 207 AIASETGQKFVVE 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++++ N + S+PTS GK+LV E+ +++ L ++ K+ + +LP++S+V EK SL+ A E
Sbjct: 154 VIKSANLIFSLPTSAGKSLVAEVHLLRHL-LEGKNGLLVLPFVSIVQEKVASLSAIASET 212
Query: 61 --KFYLE 65
KF +E
Sbjct: 213 GQKFVVE 219
>gi|242803099|ref|XP_002484105.1| DNA-directed DNA polymerase theta, putative [Talaromyces stipitatus
ATCC 10500]
gi|218717450|gb|EED16871.1| DNA-directed DNA polymerase theta, putative [Talaromyces stipitatus
ATCC 10500]
Length = 946
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 11 IPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK-------FY 63
I ++ V I + +SA P +SL H KY F+ +
Sbjct: 99 IRSTANNNAVSAIPSLAPPPAPSQSAATSNPLLSLQHPKYGLPPALVANFQAVGIHSIYP 158
Query: 64 LEGKCL----EMIQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHE 118
+ CL + KN + + PT GGK+LV ++L++K ++ + AI +LPYI+LV E
Sbjct: 159 WQASCLLGRGHLTAEKNLLYTAPTGGGKSLVADVLMLKRVIENPHRKAILVLPYIALVQE 218
Query: 119 KYQSLAKAAEE 129
K + L + ++
Sbjct: 219 KLKWLRRIVQD 229
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
+ KN + + PT GGK+LV ++L++K ++ + AI +LPYI+LV EK + L + ++
Sbjct: 170 LTAEKNLLYTAPTGGGKSLVADVLMLKRVIENPHRKAILVLPYIALVQEKLKWLRRIVQD 229
>gi|261330379|emb|CBH13363.1| DNA polymerase theta (helicase domain only),putative [Trypanosoma
brucei gambiense DAL972]
Length = 1057
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG 66
V S+PTSGGKTLV EI +++ L + +S +F+LP++SL EK ++ + F ++G
Sbjct: 287 VYSLPTSGGKTLVAEISLLRCLINRGQSCLFVLPFVSLAEEKTDAMIPLGDVLGFTVDG 345
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
V S+PTSGGKTLV EI +++ L + +S +F+LP++SL EK ++ + F ++
Sbjct: 287 VYSLPTSGGKTLVAEISLLRCLINRGQSCLFVLPFVSLAEEKTDAMIPLGDVLGFTVD 344
>gi|72392731|ref|XP_847166.1| DNA polymerase theta (helicase domain only) [Trypanosoma brucei
TREU927]
gi|62359211|gb|AAX79654.1| DNA polymerase theta (helicase domain only), putative [Trypanosoma
brucei]
gi|70803196|gb|AAZ13100.1| DNA polymerase theta (helicase domain only), putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 1057
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG 66
V S+PTSGGKTLV EI +++ L + +S +F+LP++SL EK ++ + F ++G
Sbjct: 287 VYSLPTSGGKTLVAEISLLRCLINRGQSCLFVLPFVSLAEEKTDAMIPLGDVLGFTVDG 345
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
V S+PTSGGKTLV EI +++ L + +S +F+LP++SL EK ++ + F ++
Sbjct: 287 VYSLPTSGGKTLVAEISLLRCLINRGQSCLFVLPFVSLAEEKTDAMIPLGDVLGFTVD 344
>gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis]
Length = 2117
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 65 EGKCLE---MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
+ +CL ++ KN + PTSGGK+LV E+L+++ + + A+ +LP++S+ EK +
Sbjct: 488 QAECLTTPGVLHGKNLIYCAPTSGGKSLVAEVLMLRRILTTNRPAMLVLPFVSICSEKSE 547
Query: 122 SLAK 125
L+K
Sbjct: 548 HLSK 551
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ KN + PTSGGK+LV E+L+++ + + A+ +LP++S+ EK + L+K
Sbjct: 497 VLHGKNLIYCAPTSGGKSLVAEVLMLRRILTTNRPAMLVLPFVSICSEKSEHLSK 551
>gi|428169897|gb|EKX38827.1| hypothetical protein GUITHDRAFT_115154 [Guillardia theta CCMP2712]
Length = 910
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL------KIKQKSAIFILPYISLVHEKYQSLA 54
++Q N VLS PTS GKTLV +ILI++ L + + A+ +LPY+SL EK SL
Sbjct: 158 ILQGGNLVLSAPTSAGKTLVSDILILRNLVRAMQRETGRAKALLVLPYVSLAQEKTLSLK 217
Query: 55 KAAEEFKFYLEG 66
A + G
Sbjct: 218 HTASPLNIKVTG 229
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKEL------KIKQKSAIFILPYISLVHEKYQSLA 124
++Q N VLS PTS GKTLV +ILI++ L + + A+ +LPY+SL EK SL
Sbjct: 158 ILQGGNLVLSAPTSAGKTLVSDILILRNLVRAMQRETGRAKALLVLPYVSLAQEKTLSLK 217
Query: 125 KAA 127
A
Sbjct: 218 HTA 220
>gi|154337992|ref|XP_001565222.1| putative DNA polymerase theta (helicase domain only) [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134062269|emb|CAM36657.1| putative DNA polymerase theta (helicase domain only) [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 2239
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
Q + V S+PTSGGK+LV E+ +++ + ++KS +LP++SL EK +L F F
Sbjct: 1250 QGGSFVYSLPTSGGKSLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLTAAFDF 1309
Query: 63 YLEG 66
++G
Sbjct: 1310 NVDG 1313
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
E+ Q + V S+PTSGGK+LV E+ +++ + ++KS +LP++SL EK +L
Sbjct: 1247 EVRQGGSFVYSLPTSGGKSLVAELSLLRCVLNRRKSCFLVLPFVSLAEEKTMALQPLTAA 1306
Query: 130 FKFYLE 135
F F ++
Sbjct: 1307 FDFNVD 1312
>gi|242007943|ref|XP_002424774.1| DNA polymerase theta, putative [Pediculus humanus corporis]
gi|212508297|gb|EEB12036.1| DNA polymerase theta, putative [Pediculus humanus corporis]
Length = 1350
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 8/70 (11%)
Query: 60 FKFYLEGKCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
F + LE CL + ++ N V S PTS GKTLV EILI K + QK A+ ILP++S+V
Sbjct: 68 FPWQLE--CLSLGRVLEGGNLVYSAPTSAGKTLVAEILISKSIFEVQKKALMILPFVSVV 125
Query: 117 HEK---YQSL 123
EK +QS+
Sbjct: 126 REKMFYFQSM 135
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK---YQSL 53
N V S PTS GKTLV EILI K + QK A+ ILP++S+V EK +QS+
Sbjct: 85 NLVYSAPTSAGKTLVAEILISKSIFEVQKKALMILPFVSVVREKMFYFQSM 135
>gi|367043996|ref|XP_003652378.1| hypothetical protein THITE_2065919 [Thielavia terrestris NRRL 8126]
gi|346999640|gb|AEO66042.1| hypothetical protein THITE_2065919 [Thielavia terrestris NRRL 8126]
Length = 936
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 12/97 (12%)
Query: 39 ILPYISLVHEKYQSLAKAAEEFK-------FYLEGKCLE----MIQNKNCVLSIPTSGGK 87
I P +SL H Y ++ F + + +CL + KN V S PT GGK
Sbjct: 112 IDPLLSLSHPAYGLPSQLVANFAALGIRSIYPWQKQCLLGPGLLTGEKNLVYSAPTGGGK 171
Query: 88 TLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
+LV +IL++K L+ + AI +LPY++LV EK + L
Sbjct: 172 SLVADILMLKRVLESRDAKAILVLPYVALVQEKVRWL 208
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 53
KN V S PT GGK+LV +IL++K L+ + AI +LPY++LV EK + L
Sbjct: 159 KNLVYSAPTGGGKSLVADILMLKRVLESRDAKAILVLPYVALVQEKVRWL 208
>gi|291243319|ref|XP_002741550.1| PREDICTED: mutagen-sensitive 308-like [Saccoglossus kowalevskii]
Length = 1230
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S PTS GKT+V E+LI+K + ++ AI ILP++S+ EK L + EE +E
Sbjct: 487 NLVYSAPTSAGKTMVAELLILKRVLETKQKAIVILPFVSVAREKMFYLQRMFEECGVRVE 546
Query: 66 G 66
G
Sbjct: 547 G 547
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F + +CL +++ N V S PTS GKT+V E+LI+K + ++ AI ILP++S+ E
Sbjct: 470 FDWQAECLSQGKVLSGGNLVYSAPTSAGKTMVAELLILKRVLETKQKAIVILPFVSVARE 529
Query: 119 KYQSLAKAAEE 129
K L + EE
Sbjct: 530 KMFYLQRMFEE 540
>gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis]
gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis]
Length = 2086
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ +++N V S PTS GKTLV EIL++K + ++K + ILP+IS+V EK
Sbjct: 280 LFEHRNLVYSAPTSAGKTLVSEILLLKTVLERRKKVLLILPFISVVREK 328
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ +++N V S PTS GKTLV EIL++K + ++K + ILP+IS+V EK L
Sbjct: 280 LFEHRNLVYSAPTSAGKTLVSEILLLKTVLERRKKVLLILPFISVVREKMFYLQDLLTPA 339
Query: 61 KFYLEG 66
+ +EG
Sbjct: 340 GYRVEG 345
>gi|405950373|gb|EKC18366.1| DNA polymerase theta [Crassostrea gigas]
Length = 2674
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 60 FKFYLEGKCLE-MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F++ E CL ++ N V S PTS GKT+V E+L++K + +K AI ILP++S+ E
Sbjct: 167 FEWQAECLCLPGVLDGGNLVYSAPTSAGKTMVAELLVLKRVLETKKKAIIILPFVSVARE 226
Query: 119 KYQSLAKAAEE 129
K L + +E
Sbjct: 227 KMFYLQQLYQE 237
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S PTS GKT+V E+L++K + +K AI ILP++S+ EK L + +E +
Sbjct: 184 NLVYSAPTSAGKTMVAELLVLKRVLETKKKAIIILPFVSVAREKMFYLQQLYQEVGVSVS 243
Query: 66 G 66
G
Sbjct: 244 G 244
>gi|255075777|ref|XP_002501563.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
gi|226516827|gb|ACO62821.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
Length = 1026
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL--KIKQKSAIFILPYISLVHEKYQSLAK 55
N V PTSGGK+LV E+L++K L + +Q A+F+LP+ SLV+EK + L K
Sbjct: 150 NLVFCAPTSGGKSLVAEVLLVKALMRRGRQGRALFVLPFHSLVNEKSKDLEK 201
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKEL--KIKQKSAIFILPYISLVHEKYQSLAK 125
N V PTSGGK+LV E+L++K L + +Q A+F+LP+ SLV+EK + L K
Sbjct: 150 NLVFCAPTSGGKSLVAEVLLVKALMRRGRQGRALFVLPFHSLVNEKSKDLEK 201
>gi|312083560|ref|XP_003143912.1| hypothetical protein LOAG_08332 [Loa loa]
Length = 811
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLE---MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E Y++L + + + + +CL +I N ++S+ T GKTLV EI++++E +++
Sbjct: 72 EMYRNLRNISSFYDW--QNQCLNDEHLISGTNMIISMGTGAGKTLVAEIVMLRETIFRRR 129
Query: 105 SAIFILPYISLVHEKYQSLA 124
S I ++PY+++ EK SL+
Sbjct: 130 SCILVVPYVAIAQEKVYSLS 149
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
++ N ++S+ T GKTLV EI++++E +++S I ++PY+++ EK SL+
Sbjct: 96 LISGTNMIISMGTGAGKTLVAEIVMLRETIFRRRSCILVVPYVAIAQEKVYSLS 149
>gi|391331047|ref|XP_003739962.1| PREDICTED: DNA polymerase theta-like [Metaseiulus occidentalis]
Length = 1916
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+++ KN V S PTS GKTLV E+L++K++ +K A+ ILP++S+ EK
Sbjct: 68 VLKGKNLVYSAPTSAGKTLVSELLMLKKVLETRKKAVMILPFVSVTREK 116
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+++ KN V S PTS GKTLV E+L++K++ +K A+ ILP++S+ EK
Sbjct: 68 VLKGKNLVYSAPTSAGKTLVSELLMLKKVLETRKKAVMILPFVSVTREK 116
>gi|340371793|ref|XP_003384429.1| PREDICTED: DNA polymerase theta-like [Amphimedon queenslandica]
Length = 1768
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
++ +N + S PTS GKTLV E+L +K + +QK + +LP++S+VHEK L E
Sbjct: 178 VLTGRNVLYSAPTSSGKTLVAELLSLKCILERQKKVLVVLPFVSIVHEKVNHLKSMFE 235
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
++ +N + S PTS GKTLV E+L +K + +QK + +LP++S+VHEK L E
Sbjct: 178 VLTGRNVLYSAPTSSGKTLVAELLSLKCILERQKKVLVVLPFVSIVHEKVNHLKSMFE 235
>gi|258565945|ref|XP_002583717.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907418|gb|EEP81819.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 855
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN V S PT GGK+LV ++L++K + +K AI +LPY++LV EK + L + E
Sbjct: 161 LTAEKNLVYSAPTGGGKSLVADVLMLKRIIDDPRKKAILVLPYVALVQEKMKWLRRLVE 219
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 43 ISLVHEKY---QSLAKAAEEF----KFYLEGKCL----EMIQNKNCVLSIPTSGGKTLVG 91
+SL H +Y +SL E+ + + CL + KN V S PT GGK+LV
Sbjct: 122 LSLRHSQYGLPESLVANFEKMGVNAMYPWQMSCLLGRGHLTAEKNLVYSAPTGGGKSLVA 181
Query: 92 EILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
++L++K + +K AI +LPY++LV EK + L + E
Sbjct: 182 DVLMLKRIIDDPRKKAILVLPYVALVQEKMKWLRRLVE 219
>gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni]
gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni]
Length = 2080
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL + +++N V S PTS GKTLV EIL++K + + K + ILP+IS+V
Sbjct: 236 FDWQVECLSKPQVLFEHRNLVYSAPTSAGKTLVSEILLLKTVLERSKKVLVILPFISVVR 295
Query: 118 EK 119
EK
Sbjct: 296 EK 297
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ +++N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK
Sbjct: 249 LFEHRNLVYSAPTSAGKTLVSEILLLKTVLERSKKVLVILPFISVVREK 297
>gi|393906987|gb|EJD74472.1| type III restriction enzyme [Loa loa]
Length = 516
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLE---MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E Y++L + + + + +CL +I N ++S+ T GKTLV EI++++E +++
Sbjct: 72 EMYRNLRNISSFYDW--QNQCLNDEHLISGTNMIISMGTGAGKTLVAEIVMLRETIFRRR 129
Query: 105 SAIFILPYISLVHEKYQSLA 124
S I ++PY+++ EK SL+
Sbjct: 130 SCILVVPYVAIAQEKVYSLS 149
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
++ N ++S+ T GKTLV EI++++E +++S I ++PY+++ EK SL+
Sbjct: 96 LISGTNMIISMGTGAGKTLVAEIVMLRETIFRRRSCILVVPYVAIAQEKVYSLS 149
>gi|403341625|gb|EJY70124.1| DNA polymerase theta subunit [Oxytricha trifallax]
Length = 1698
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 62 FYLEGKCLEMIQN-----KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
F + +CL + KN + PTSGGK++V E+L+++++ +K A+++LP++S+V
Sbjct: 423 FDWQSECLSQSKEVLDGKKNLIYFAPTSGGKSVVAELLMLRQILGYKKRAVYVLPFVSIV 482
Query: 117 HEKYQSLAKAAE 128
EK Q L K E
Sbjct: 483 TEKQQYLTKLLE 494
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
KN + PTSGGK++V E+L+++++ +K A+++LP++S+V EK Q L K E
Sbjct: 441 KNLIYFAPTSGGKSVVAELLMLRQILGYKKRAVYVLPFVSIVTEKQQYLTKLLE 494
>gi|296416253|ref|XP_002837795.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633678|emb|CAZ81986.1| unnamed protein product [Tuber melanosporum]
Length = 937
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 65 EGKCLEM----IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+ +CL M N V + PTS GK+LV +IL ++++ +++ AI +LP+I++V EK
Sbjct: 176 QAECLAMSGLLAGESNLVYTAPTSAGKSLVADILAIRKVVNERRKAIIVLPFIAIVQEKT 235
Query: 121 QSLAKAAEEFK 131
+ L K E+ +
Sbjct: 236 RFLKKVLEKVR 246
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N V + PTS GK+LV +IL ++++ +++ AI +LP+I++V EK + L K E+ +
Sbjct: 191 NLVYTAPTSAGKSLVADILAIRKVVNERRKAIIVLPFIAIVQEKTRFLKKVLEKVR 246
>gi|346979391|gb|EGY22843.1| polymerase [Verticillium dahliae VdLs.17]
Length = 916
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 53
KN V S PT GGK+LV ++L++K L+ K AI +LPY++LV EK + L
Sbjct: 195 KNLVYSAPTGGGKSLVADVLMLKRVLEDKDAKAILVLPYVALVQEKVRWL 244
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
KN V S PT GGK+LV ++L++K L+ K AI +LPY++LV EK + L
Sbjct: 195 KNLVYSAPTGGGKSLVADVLMLKRVLEDKDAKAILVLPYVALVQEKVRWL 244
>gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163, partial [Trichoplax
adhaerens]
Length = 1492
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V E Y+S+ F + +CL + + N V + PTS GKTL+ E+L++K +
Sbjct: 10 VLENYRSVGITK---MFEWQVQCLTLGNVLNGGNLVYAAPTSAGKTLIAELLMLKRVLES 66
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAE 128
++ A+ ILPY+S+V EK L + E
Sbjct: 67 KRKALLILPYVSVVREKTAYLQRLFE 92
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
N V + PTS GKTL+ E+L++K + ++ A+ ILPY+S+V EK L + E
Sbjct: 40 NLVYAAPTSAGKTLIAELLMLKRVLESKRKALLILPYVSVVREKTAYLQRLFE 92
>gi|339242739|ref|XP_003377295.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
gi|316973917|gb|EFV57460.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
Length = 524
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCLEM----IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL + + N V S PTS GKTLV EIL++K + ++ A+FILP++S+
Sbjct: 65 FAWQYQCLTLPGVLSEGANLVYSAPTSAGKTLVAEILLLKRVLQTRRRALFILPFVSVAR 124
Query: 118 EK 119
EK
Sbjct: 125 EK 126
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ N V S PTS GKTLV EIL++K + ++ A+FILP++S+ EK
Sbjct: 80 EGANLVYSAPTSAGKTLVAEILLLKRVLQTRRRALFILPFVSVAREK 126
>gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta]
gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta]
Length = 2037
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNC--VLSIPTSGGKTLVGEILIMKELKIKQ 103
+ E+Y+ + F + +E C + ++C V S PTS GKTLV EIL++K + +
Sbjct: 217 IQEEYKK-KGVVQMFDWQVECLCKPRVLFEHCNLVYSAPTSAGKTLVSEILLLKTVLERG 275
Query: 104 KSAIFILPYISLVHEK 119
K A+ ILP+IS+V EK
Sbjct: 276 KKALLILPFISVVREK 291
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ ++ N V S PTS GKTLV EIL++K + + K A+ ILP+IS+V EK L
Sbjct: 243 LFEHCNLVYSAPTSAGKTLVSEILLLKTVLERGKKALLILPFISVVREKMFYLQDLLTPA 302
Query: 61 KFYLEG 66
+ +EG
Sbjct: 303 GYRVEG 308
>gi|408388335|gb|EKJ68021.1| hypothetical protein FPSE_11832 [Fusarium pseudograminearum CS3096]
Length = 904
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P + L H Y + + F + + CL+ + KN V PT GGK+L
Sbjct: 101 PELDLSHPSYDLPRQMVDNFASLGIKQIYPWQKACLKGPGLLTGEKNLVYCAPTGGGKSL 160
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
V ++L++K L+ K A+ +LPY++LV EK + L + +F E
Sbjct: 161 VADVLMLKRILQEKGTKALLVLPYVALVQEKVRWLRNVVQGLRFAPE 207
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63
KN V PT GGK+LV ++L++K L+ K A+ +LPY++LV EK + L + +F
Sbjct: 146 KNLVYCAPTGGGKSLVADVLMLKRILQEKGTKALLVLPYVALVQEKVRWLRNVVQGLRFA 205
Query: 64 LE 65
E
Sbjct: 206 PE 207
>gi|46124913|ref|XP_387010.1| hypothetical protein FG06834.1 [Gibberella zeae PH-1]
Length = 873
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIM 96
P + L H Y + + + CL+ + KN V PT GGK+LV ++L++
Sbjct: 101 PELDLSHPSYD----LPRQMIYPWQKACLKGPGLLTGEKNLVYCAPTGGGKSLVADVLML 156
Query: 97 KE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
K L+ K A+ +LPY++LV EK + L + +F E
Sbjct: 157 KRILQEKGTKALLVLPYVALVQEKVRWLRSVVQGLRFAPE 196
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63
KN V PT GGK+LV ++L++K L+ K A+ +LPY++LV EK + L + +F
Sbjct: 135 KNLVYCAPTGGGKSLVADVLMLKRILQEKGTKALLVLPYVALVQEKVRWLRSVVQGLRFA 194
Query: 64 LE 65
E
Sbjct: 195 PE 196
>gi|156358463|ref|XP_001624538.1| predicted protein [Nematostella vectensis]
gi|156211325|gb|EDO32438.1| predicted protein [Nematostella vectensis]
Length = 150
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F + CL ++Q N V S PTS GKT+V E+L++K + ++ A+ ILP++S+ E
Sbjct: 2 FQWQADCLCTGNVLQGGNLVYSAPTSAGKTMVAELLMLKRVLETKRKALLILPFVSVARE 61
Query: 119 KYQSLAKAAEEFKFYLE 135
K L + +E +E
Sbjct: 62 KMFYLQRLFQEAGVRVE 78
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++Q N V S PTS GKT+V E+L++K + ++ A+ ILP++S+ EK L + +E
Sbjct: 14 VLQGGNLVYSAPTSAGKTMVAELLMLKRVLETKRKALLILPFVSVAREKMFYLQRLFQEA 73
Query: 61 KFYLEG 66
+EG
Sbjct: 74 GVRVEG 79
>gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba]
gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba]
Length = 2043
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ ++ N V S PTS GKTLV EIL++K + + K A+ ILP+IS+V EK
Sbjct: 246 LFEHCNLVYSAPTSAGKTLVSEILLLKTVLERGKKALLILPFISVVREK 294
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ ++ N V S PTS GKTLV EIL++K + + K A+ ILP+IS+V EK L
Sbjct: 246 LFEHCNLVYSAPTSAGKTLVSEILLLKTVLERGKKALLILPFISVVREKMFYLQDLLTPA 305
Query: 61 KFYLEG 66
+ +EG
Sbjct: 306 GYRVEG 311
>gi|358372034|dbj|GAA88639.1| DNA-directed DNA polymerase theta [Aspergillus kawachii IFO 4308]
Length = 932
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
PY+SL H Y + A A + + CL + +++ V + PT GGK+L
Sbjct: 112 PYLSLNHPTYGLPPGLVANFAAAGLRSIYQWQASCLLAPGLLKGDRHLVYTAPTGGGKSL 171
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
V ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 172 VADVLMLKRIIENPGRKAILVLPYVALVQEKLKWLRRIVQD 212
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
+++ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 156 DRHLVYTAPTGGGKSLVADVLMLKRIIENPGRKAILVLPYVALVQEKLKWLRRIVQD 212
>gi|261403281|ref|YP_003247505.1| DEAD/DEAH box helicase [Methanocaldococcus vulcanius M7]
gi|261370274|gb|ACX73023.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
M7]
Length = 963
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 67 KCLEM---IQNKNCVLSIPTSGGKTLVGEI-----LIMKELKIKQKSAIFILPYISLVHE 118
K LEM +NKN ++SIPT+ GKTL+GEI L+ L + IFI+P +L E
Sbjct: 22 KALEMGLLDKNKNFIISIPTASGKTLIGEIALINHLLDDNLTPTGRKGIFIVPLKALASE 81
Query: 119 KYQSLAKAAEEF 130
KY+ E+F
Sbjct: 82 KYEEFKNKYEKF 93
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEI-----LIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57
+NKN ++SIPT+ GKTL+GEI L+ L + IFI+P +L EKY+
Sbjct: 31 KNKNFIISIPTASGKTLIGEIALINHLLDDNLTPTGRKGIFIVPLKALASEKYEEFKNKY 90
Query: 58 EEF 60
E+F
Sbjct: 91 EKF 93
>gi|350638044|gb|EHA26400.1| hypothetical protein ASPNIDRAFT_36173 [Aspergillus niger ATCC 1015]
Length = 932
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
PY+SL H Y + A A + + CL + +++ V + PT GGK+L
Sbjct: 112 PYLSLNHPTYGLPPGLVANFAAAGLSSIYQWQASCLLAPGLLKGDRHLVYTAPTGGGKSL 171
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
V ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 172 VADVLMLKRIIENPGRKAILVLPYVALVQEKLKWLRRIVQD 212
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
+++ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 156 DRHLVYTAPTGGGKSLVADVLMLKRIIENPGRKAILVLPYVALVQEKLKWLRRIVQD 212
>gi|317025341|ref|XP_001388880.2| DNA-directed DNA polymerase theta [Aspergillus niger CBS 513.88]
Length = 938
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
PY+SL H Y + A A + + CL + +++ V + PT GGK+L
Sbjct: 112 PYLSLNHPTYGLPPGLVANFAAAGLSSIYQWQASCLLAPGLLKGDRHLVYTAPTGGGKSL 171
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
V ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 172 VADVLMLKRIIENPGRKAILVLPYVALVQEKLKWLRRIVQD 212
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
+++ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 156 DRHLVYTAPTGGGKSLVADVLMLKRIIENPGRKAILVLPYVALVQEKLKWLRRIVQD 212
>gi|134054980|emb|CAK36988.1| unnamed protein product [Aspergillus niger]
Length = 913
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
PY+SL H Y + A A + + CL + +++ V + PT GGK+L
Sbjct: 112 PYLSLNHPTYGLPPGLVANFAAAGLSSIYQWQASCLLAPGLLKGDRHLVYTAPTGGGKSL 171
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
V ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 172 VADVLMLKRIIENPGRKAILVLPYVALVQEKLKWLRRIVQD 212
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+++ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 156 DRHLVYTAPTGGGKSLVADVLMLKRIIENPGRKAILVLPYVALVQEKLKWLRRIVQDRSI 215
Query: 63 YLEG 66
+ G
Sbjct: 216 RVTG 219
>gi|312377443|gb|EFR24272.1| hypothetical protein AND_11228 [Anopheles darlingi]
Length = 2035
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ +N V S PTS GKTLV E L+ K + +Q+ + ILP++++ EK L +
Sbjct: 466 LLEGRNLVYSAPTSAGKTLVSEFLLAKTIAERQRKCLLILPFVAVAREKTHYLQQ 520
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ +N V S PTS GKTLV E L+ K + +Q+ + ILP++++ EK L +
Sbjct: 466 LLEGRNLVYSAPTSAGKTLVSEFLLAKTIAERQRKCLLILPFVAVAREKTHYLQQ 520
>gi|324518404|gb|ADY47093.1| Helicase POLQ-like protein [Ascaris suum]
Length = 321
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
N + S PTS GKT+V E++ + + +++ A+FI PYIS+ EK+ +L +
Sbjct: 2 NLLFSAPTSAGKTIVAELIALNTILTRKRKALFIFPYISVAREKFLNLQR 51
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
N + S PTS GKT+V E++ + + +++ A+FI PYIS+ EK+ +L +
Sbjct: 2 NLLFSAPTSAGKTIVAELIALNTILTRKRKALFIFPYISVAREKFLNLQR 51
>gi|342890206|gb|EGU89068.1| hypothetical protein FOXB_00417 [Fusarium oxysporum Fo5176]
Length = 1368
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P + L H Y + + F + + CL+ + KN V PT GGK+L
Sbjct: 100 PELELSHSTYSLPQQLVDNFASLGIKQIYPWQKSCLKGPGLLTGEKNLVYCAPTGGGKSL 159
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
V ++L++K L+ K A+ +LPY++LV EK + L + F E
Sbjct: 160 VADVLMLKRILEEKGTKALLVLPYVALVQEKVRWLRSVVQGLHFASE 206
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63
KN V PT GGK+LV ++L++K L+ K A+ +LPY++LV EK + L + F
Sbjct: 145 KNLVYCAPTGGGKSLVADVLMLKRILEEKGTKALLVLPYVALVQEKVRWLRSVVQGLHFA 204
Query: 64 LE 65
E
Sbjct: 205 SE 206
>gi|360044621|emb|CCD82169.1| putative dna polymerase theta [Schistosoma mansoni]
Length = 1258
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 29 LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTS 84
++IK S I I + E Y+ + F + +CL + KN V S PTS
Sbjct: 1 MEIKVGSPIRIEDAFYVPEELYRQYKEMNISSIFSWQAECLNLPGVLDGCKNLVYSAPTS 60
Query: 85 GGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
GKTLV EI+++K + A ILPY+S+ EK L K
Sbjct: 61 AGKTLVAEIIVLKRILESALKAFIILPYVSVSREKMIYLQK 101
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
KN V S PTS GKTLV EI+++K + A ILPY+S+ EK L K
Sbjct: 51 KNLVYSAPTSAGKTLVAEIIVLKRILESALKAFIILPYVSVSREKMIYLQK 101
>gi|256082460|ref|XP_002577474.1| DNA polymerase theta [Schistosoma mansoni]
Length = 1257
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 29 LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTS 84
++IK S I I + E Y+ + F + +CL + KN V S PTS
Sbjct: 1 MEIKVGSPIRIEDAFYVPEELYRQYKEMNISSIFSWQAECLNLPGVLDGCKNLVYSAPTS 60
Query: 85 GGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
GKTLV EI+++K + A ILPY+S+ EK L K
Sbjct: 61 AGKTLVAEIIVLKRILESALKAFIILPYVSVSREKMIYLQK 101
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
KN V S PTS GKTLV EI+++K + A ILPY+S+ EK L K
Sbjct: 51 KNLVYSAPTSAGKTLVAEIIVLKRILESALKAFIILPYVSVSREKMIYLQK 101
>gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi]
gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi]
Length = 2235
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK
Sbjct: 314 LFEHSNLVYSAPTSAGKTLVSEILLLKTVLERGKKVLLILPFISVVREK 362
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK L
Sbjct: 314 LFEHSNLVYSAPTSAGKTLVSEILLLKTVLERGKKVLLILPFISVVREKMFYLQDLLTPA 373
Query: 61 KFYLEG 66
+ +EG
Sbjct: 374 GYRVEG 379
>gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis]
gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis]
Length = 2181
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 28 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPT 83
+LK ++ + + LP+ L K + + E F + +E CL + ++ N V S PT
Sbjct: 261 DLKALKQISAWNLPHSVLAEYKKKGVV---EMFDWQVE--CLSKPKVLFEHCNLVYSAPT 315
Query: 84 SGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
S GKTLV EIL++K + + K + ILP+IS+V EK
Sbjct: 316 SAGKTLVSEILLLKTVLERGKKVLLILPFISVVREK 351
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK L
Sbjct: 303 LFEHCNLVYSAPTSAGKTLVSEILLLKTVLERGKKVLLILPFISVVREKMFYLQDLLTPA 362
Query: 61 KFYLEG 66
+ +EG
Sbjct: 363 GYRVEG 368
>gi|402585569|gb|EJW79508.1| hypothetical protein WUBG_09582, partial [Wuchereria bancrofti]
Length = 119
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 64 LEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
L + L+ Q N + S PTS GKT+V E++ + ++ + AIF+ PYIS+ EK+ L
Sbjct: 32 LNNRSLQAPQYGNFIFSAPTSSGKTVVAELIAVNTVRQLRCKAIFVFPYISVAKEKFLCL 91
Query: 124 AK 125
K
Sbjct: 92 QK 93
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
Q N + S PTS GKT+V E++ + ++ + AIF+ PYIS+ EK+ L K
Sbjct: 41 QYGNFIFSAPTSSGKTVVAELIAVNTVRQLRCKAIFVFPYISVAKEKFLCLQK 93
>gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi]
gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi]
Length = 2218
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK
Sbjct: 328 LFEHSNLVYSAPTSAGKTLVSEILLLKTVLERGKKVLLILPFISVVREK 376
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK L
Sbjct: 328 LFEHSNLVYSAPTSAGKTLVSEILLLKTVLERGKKVLLILPFISVVREKMFYLQDLLTPA 387
Query: 61 KFYLEG 66
+ +EG
Sbjct: 388 GYRVEG 393
>gi|357617715|gb|EHJ70955.1| putative DNA polymerase theta [Danaus plexippus]
Length = 1279
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL +I +N + S PTS GKTLV E+L +K + +QK I ILP++S+V
Sbjct: 2 FDWQVECLSNPKVLIDCQNLLYSAPTSAGKTLVAELLTIKTVLERQKKVIIILPFVSIVR 61
Query: 118 EK 119
EK
Sbjct: 62 EK 63
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ +N + S PTS GKTLV E+L +K + +QK I ILP++S+V EK
Sbjct: 15 LIDCQNLLYSAPTSAGKTLVAELLTIKTVLERQKKVIIILPFVSIVREK 63
>gi|400602952|gb|EJP70550.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 932
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+N V PT GGK+LV ++L++K L ++ A+ +LPY++LV EK + L + E K+
Sbjct: 150 RNLVYCAPTGGGKSLVADLLMLKRILHSRESKALLVLPYVALVQEKVRWLRQLVEGLKY 208
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+N V PT GGK+LV ++L++K L ++ A+ +LPY++LV EK + L + E K+
Sbjct: 150 RNLVYCAPTGGGKSLVADLLMLKRILHSRESKALLVLPYVALVQEKVRWLRQLVEGLKY 208
>gi|390336212|ref|XP_788319.3| PREDICTED: uncharacterized protein LOC583312 [Strongylocentrotus
purpuratus]
Length = 3938
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 51 QSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
Q +A F + +CL +++ N V + PTS GKTLV E+L++K++ +K A+
Sbjct: 543 QQYHRAGITKMFPWQVECLGAGRVLEGGNLVYAAPTSAGKTLVAELLVLKKILETKKKAL 602
Query: 108 FILPYISLVHEK 119
ILP++S+ EK
Sbjct: 603 IILPFVSVTREK 614
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 51 QSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
Q +A F + +CL +++ N V + PTS GKTLV E+L++K++ +K A+
Sbjct: 1243 QQYHRAGITKMFPWQVECLGAGRVLEGGNLVYAAPTSAGKTLVAELLVLKKILETKKKAL 1302
Query: 108 FILPYISLVHEK 119
ILP++S+ EK
Sbjct: 1303 IILPFVSVTREK 1314
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ N V + PTS GKTLV E+L++K++ +K A+ ILP++S+ EK L E
Sbjct: 566 VLEGGNLVYAAPTSAGKTLVAELLVLKKILETKKKALIILPFVSVTREKMFYLQSMFSEA 625
Query: 61 KFYLEG 66
++G
Sbjct: 626 GVRVDG 631
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ N V + PTS GKTLV E+L++K++ +K A+ ILP++S+ EK L E
Sbjct: 1266 VLEGGNLVYAAPTSAGKTLVAELLVLKKILETKKKALIILPFVSVTREKMFYLQSMFSEA 1325
Query: 61 KFYLEG 66
++G
Sbjct: 1326 GVRVDG 1331
>gi|212540008|ref|XP_002150159.1| DNA-directed DNA polymerase theta, putative [Talaromyces marneffei
ATCC 18224]
gi|210067458|gb|EEA21550.1| DNA-directed DNA polymerase theta, putative [Talaromyces marneffei
ATCC 18224]
Length = 943
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGKTL 89
P +SL H KY F+ + + CL + KN + + PT GGK+L
Sbjct: 126 PLLSLQHPKYGLPPALVANFQAVGIHSIYPWQASCLLGRGHLTAEKNLLYTAPTGGGKSL 185
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V ++L+++ + + AI +LPY++LV EK + L + +
Sbjct: 186 VADVLMLRRVIDNPHRKAILVLPYVALVQEKLKWLRRIVQ 225
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN + + PT GGK+LV ++L+++ + + AI +LPY++LV EK + L + +
Sbjct: 167 LTAEKNLLYTAPTGGGKSLVADVLMLRRVIDNPHRKAILVLPYVALVQEKLKWLRRIVQ 225
>gi|167383171|ref|XP_001736435.1| DNA double-strand break repair Rad50 ATPase [Entamoeba dispar
SAW760]
gi|165901222|gb|EDR27340.1| DNA double-strand break repair Rad50 ATPase, putative [Entamoeba
dispar SAW760]
Length = 835
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK + + E K ++
Sbjct: 76 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEKEEYFKEILESIKINIK 135
Query: 66 G 66
G
Sbjct: 136 G 136
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK + + E K
Sbjct: 76 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEKEEYFKEILESIK 131
>gi|154421213|ref|XP_001583620.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121917863|gb|EAY22634.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 787
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHEKYQSLAKAAE 128
E QNKN V+ +PT+GGKT+ E+ I ++L+ S I + +P++SL EKY ++
Sbjct: 55 EWRQNKNIVVKVPTAGGKTVAAEVAIAQQLEADITSKILYCVPFVSLAAEKYTQFSQRFP 114
Query: 129 EFK---FYLEV 136
+++ FY V
Sbjct: 115 KYQVKAFYQNV 125
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHEKYQSLAK 55
QNKN V+ +PT+GGKT+ E+ I ++L+ S I + +P++SL EKY ++
Sbjct: 58 QNKNIVVKVPTAGGKTVAAEVAIAQQLEADITSKILYCVPFVSLAAEKYTQFSQ 111
>gi|115388475|ref|XP_001211743.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195827|gb|EAU37527.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 279
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS--AIFILPYISL 115
+ + CL+ + ++ V + PT GGK+LV ++L++K + I++ S AI +LPY++L
Sbjct: 150 YPWQASCLQAPGLLEGTRHLVYTAPTGGGKSLVADVLMLKRI-IERPSCKAILVLPYVAL 208
Query: 116 VHEKYQSLAKAAEEFKFYLEVLE 138
V EK + L + ++ + Y++ E
Sbjct: 209 VQEKLKWLRRIVQDVEKYIDTDE 231
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKS--AIFILPYISLVHEKYQSLAKAAEEFKF 62
++ V + PT GGK+LV ++L++K + I++ S AI +LPY++LV EK + L + ++ +
Sbjct: 167 RHLVYTAPTGGGKSLVADVLMLKRI-IERPSCKAILVLPYVALVQEKLKWLRRIVQDVEK 225
Query: 63 YLE 65
Y++
Sbjct: 226 YID 228
>gi|167394483|ref|XP_001740981.1| DNA polymerase theta [Entamoeba dispar SAW760]
gi|165894626|gb|EDR22547.1| DNA polymerase theta, putative [Entamoeba dispar SAW760]
Length = 219
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK + + E K ++
Sbjct: 103 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEKEEYFKEILESIKINIK 162
Query: 66 G 66
G
Sbjct: 163 G 163
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK
Sbjct: 103 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEK 146
>gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti]
gi|108878374|gb|EAT42599.1| AAEL005888-PA [Aedes aegypti]
Length = 1987
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + CL +++ N V S PTSGGKTLV E L+ K + +++ AI ILP++++
Sbjct: 431 FQWQADCLSNAKVILECANLVYSAPTSGGKTLVSEFLVAKAVVERKRKAIVILPFVAVAR 490
Query: 118 EK 119
EK
Sbjct: 491 EK 492
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+++ N V S PTSGGKTLV E L+ K + +++ AI ILP++++ EK
Sbjct: 444 ILECANLVYSAPTSGGKTLVSEFLVAKAVVERKRKAIVILPFVAVAREK 492
>gi|170592397|ref|XP_001900955.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
gi|158591650|gb|EDP30255.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
Length = 637
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 64 LEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
L + L Q N + S PTS GKT+V E++ + ++ + AIF+ PYIS+ EK+ L
Sbjct: 32 LNNRSLHAPQYGNLIFSAPTSSGKTVVAELIALNTVRQLRCKAIFVFPYISVAKEKFLCL 91
Query: 124 AK 125
K
Sbjct: 92 QK 93
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
Q N + S PTS GKT+V E++ + ++ + AIF+ PYIS+ EK+ L K
Sbjct: 41 QYGNLIFSAPTSSGKTVVAELIALNTVRQLRCKAIFVFPYISVAKEKFLCLQK 93
>gi|390177772|ref|XP_001358456.3| GA19301 [Drosophila pseudoobscura pseudoobscura]
gi|388859190|gb|EAL27595.3| GA19301 [Drosophila pseudoobscura pseudoobscura]
Length = 1998
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL + ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V
Sbjct: 208 FDWQAECLSKPRVVFEHCNLVYSAPTSAGKTLVSEILLLKSVLERGKKVLVILPFISVVR 267
Query: 118 EKYQSL 123
EK L
Sbjct: 268 EKTSYL 273
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK L
Sbjct: 226 NLVYSAPTSAGKTLVSEILLLKSVLERGKKVLVILPFISVVREKTSYL 273
>gi|290998603|ref|XP_002681870.1| predicted protein [Naegleria gruberi]
gi|284095495|gb|EFC49126.1| predicted protein [Naegleria gruberi]
Length = 1648
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
KN + S PTSGGKTLV EI++++ L + +F+LP+ +++ EK +A E+FK
Sbjct: 207 KNIIYSSPTSGGKTLVSEIIMVRRLTRNKSKVVFMLPFKAIIEEK---VADLNEKFK 260
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
KN + S PTSGGKTLV EI++++ L + +F+LP+ +++ EK +A E+FK
Sbjct: 207 KNIIYSSPTSGGKTLVSEIIMVRRLTRNKSKVVFMLPFKAIIEEK---VADLNEKFK 260
>gi|116180684|ref|XP_001220191.1| hypothetical protein CHGG_00970 [Chaetomium globosum CBS 148.51]
gi|88185267|gb|EAQ92735.1| hypothetical protein CHGG_00970 [Chaetomium globosum CBS 148.51]
Length = 983
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 53
++N V S PT GGK+LV ++L++K L+ + AI +LPY++LV EK + L
Sbjct: 168 DRNLVYSAPTGGGKSLVADVLMLKRVLEDRDAKAILVLPYVALVQEKVRWL 218
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
++N V S PT GGK+LV ++L++K L+ + AI +LPY++LV EK + L
Sbjct: 168 DRNLVYSAPTGGGKSLVADVLMLKRVLEDRDAKAILVLPYVALVQEKVRWL 218
>gi|336274120|ref|XP_003351814.1| hypothetical protein SMAC_00360 [Sordaria macrospora k-hell]
gi|380096096|emb|CCC06143.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 972
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 14/97 (14%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P++SL H Y+ + F + + +CL + +KN V S PT GGK+L
Sbjct: 142 PFLSLSHPVYKLPKQLVANFAALGIKSIYPWQKQCLLGPGLLSGDKNLVYSAPTGGGKSL 201
Query: 90 VGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSL 123
V ++L++K + + AI +LPY++LV EK + L
Sbjct: 202 VADLLMLKRVLDDPAGEAKAILVLPYVALVQEKVRWL 238
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSL 53
+KN V S PT GGK+LV ++L++K + + AI +LPY++LV EK + L
Sbjct: 186 DKNLVYSAPTGGGKSLVADLLMLKRVLDDPAGEAKAILVLPYVALVQEKVRWL 238
>gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae]
gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae]
Length = 2135
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
N V S PTS GKTLV EIL++K + ++K + ILP+IS+V EK
Sbjct: 283 NLVYSAPTSAGKTLVSEILLIKTVLERRKKVLLILPFISVVREK 326
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
N V S PTS GKTLV EIL++K + ++K + ILP+IS+V EK
Sbjct: 283 NLVYSAPTSAGKTLVSEILLIKTVLERRKKVLLILPFISVVREK 326
>gi|312072727|ref|XP_003139197.1| hypothetical protein LOAG_03612 [Loa loa]
gi|307765639|gb|EFO24873.1| hypothetical protein LOAG_03612 [Loa loa]
Length = 412
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 64 LEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
L + L+ Q N + S PTS GKT+V E++ + ++ + A+F+ PYIS+ EK+ +L
Sbjct: 32 LNNRSLQAPQYGNFIFSAPTSSGKTVVAELIAVNTVRQLRCKAVFVFPYISVAKEKFLTL 91
Query: 124 AK 125
K
Sbjct: 92 QK 93
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
Q N + S PTS GKT+V E++ + ++ + A+F+ PYIS+ EK+ +L K
Sbjct: 41 QYGNFIFSAPTSSGKTVVAELIAVNTVRQLRCKAVFVFPYISVAKEKFLTLQK 93
>gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis]
Length = 1711
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 62 FYLEGKCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F + +CL + + KN ++S PTS GKTL+ EIL+ K + K A+ + P++SL E
Sbjct: 28 FAWQAECLSLPGVLDGKNLIVSAPTSAGKTLIVEILMAKRVYGTGKKALLVFPFVSLARE 87
Query: 119 K 119
K
Sbjct: 88 K 88
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ KN ++S PTS GKTL+ EIL+ K + K A+ + P++SL EK
Sbjct: 40 VLDGKNLIVSAPTSAGKTLIVEILMAKRVYGTGKKALLVFPFVSLAREK 88
>gi|344236562|gb|EGV92665.1| DNA polymerase theta [Cricetulus griseus]
Length = 2534
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG 66
PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E ++G
Sbjct: 55 PTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDG 109
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 11/56 (19%)
Query: 82 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
PTS GKTLV E+LI+K + +K A+FILP++S+ EK K+YL+ L
Sbjct: 55 PTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEK-----------KYYLQSL 99
>gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis]
gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis]
Length = 2193
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CL + ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V
Sbjct: 208 FDWQAECLSKPRVVFEHCNLVYSAPTSAGKTLVSEILLLKSVLERGKKVLVILPFISVVR 267
Query: 118 EK 119
EK
Sbjct: 268 EK 269
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK
Sbjct: 226 NLVYSAPTSAGKTLVSEILLLKSVLERGKKVLVILPFISVVREK 269
>gi|332225568|ref|XP_003261953.1| PREDICTED: DNA polymerase theta, partial [Nomascus leucogenys]
Length = 2473
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG 66
PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E ++G
Sbjct: 1 PTSAGKTLVAELLILKRVLEMRKKAVFILPFVSVAKEKKYYLQSLFQEVGIRVDG 55
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 11/56 (19%)
Query: 82 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
PTS GKTLV E+LI+K + +K A+FILP++S+ EK K+YL+ L
Sbjct: 1 PTSAGKTLVAELLILKRVLEMRKKAVFILPFVSVAKEK-----------KYYLQSL 45
>gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster]
Length = 2059
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK
Sbjct: 246 LFEHCNLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREK 294
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK
Sbjct: 246 LFEHCNLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREK 294
>gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster]
gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster]
gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster]
gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster]
Length = 2059
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK
Sbjct: 246 LFEHCNLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREK 294
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ ++ N V S PTS GKTLV EIL++K + + K + ILP+IS+V EK
Sbjct: 246 LFEHCNLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREK 294
>gi|357436569|ref|XP_003588560.1| DNA polymerase I family protein expressed [Medicago truncatula]
gi|355477608|gb|AES58811.1| DNA polymerase I family protein expressed [Medicago truncatula]
Length = 2269
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
++Q +N V TS GK+ V EIL+++++ K AI +LPY+S+ EK + L K E
Sbjct: 547 VLQRRNLVYCASTSAGKSFVAEILMLRKVITTGKMAILVLPYVSICTEKAEHLEKLLE 604
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
++Q +N V TS GK+ V EIL+++++ K AI +LPY+S+ EK + L K E
Sbjct: 547 VLQRRNLVYCASTSAGKSFVAEILMLRKVITTGKMAILVLPYVSICTEKAEHLEKLLE 604
>gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex]
Length = 1781
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N + S PTS GKTLV E+L++K + +K A++ILP++++ EK + L E+ +E
Sbjct: 194 NLIYSAPTSSGKTLVSELLMLKTVVDLKKKALYILPFVAVAREKTRFLKSVTEDVGIRVE 253
Query: 66 ---GKCLEMIQNKNCVLSIPT 83
G KNC ++I T
Sbjct: 254 SFAGSSSPPGGLKNCDIAICT 274
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
N + S PTS GKTLV E+L++K + +K A++ILP++++ EK + L E+ +E
Sbjct: 194 NLIYSAPTSSGKTLVSELLMLKTVVDLKKKALYILPFVAVAREKTRFLKSVTEDVGIRVE 253
>gi|158285510|ref|XP_564726.3| AGAP007533-PA [Anopheles gambiae str. PEST]
gi|157020027|gb|EAL41770.3| AGAP007533-PA [Anopheles gambiae str. PEST]
Length = 1997
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN + S PTS GKTLV E L+ K + ++ A+ ILP++++ EK L E
Sbjct: 424 LLEGKNLIYSAPTSAGKTLVSEFLLAKTVTERKLKAMLILPFVAVAREKMLYLKDLLEPG 483
Query: 61 KFYLEG 66
+EG
Sbjct: 484 GMRVEG 489
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+++ KN + S PTS GKTLV E L+ K + ++ A+ ILP++++ EK
Sbjct: 424 LLEGKNLIYSAPTSAGKTLVSEFLLAKTVTERKLKAMLILPFVAVAREK 472
>gi|145350926|ref|XP_001419844.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580076|gb|ABO98137.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 874
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAK--AAEEFKF 62
N + S PTSGGK+LV ++L+M+ + + S A+F+LP+++L E+ SL A EF+
Sbjct: 179 NLLYSAPTSGGKSLVADLLLMRRFRERPGSVAMFVLPFVALCEERADSLENLFAGTEFRL 238
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAK--AAEEFKF 132
N + S PTSGGK+LV ++L+M+ + + S A+F+LP+++L E+ SL A EF+
Sbjct: 179 NLLYSAPTSGGKSLVADLLLMRRFRERPGSVAMFVLPFVALCEERADSLENLFAGTEFRL 238
>gi|241747887|ref|XP_002405662.1| DNA polymerase theta, putative [Ixodes scapularis]
gi|215505916|gb|EEC15410.1| DNA polymerase theta, putative [Ixodes scapularis]
Length = 704
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 62 FYLEGKCLEMI--QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
F + +CL + ++ V S PTS GK+LV E+L++K + A+ +LP+ISL EK
Sbjct: 20 FPWQRECLLTVLHSGRSLVYSAPTSAGKSLVAELLMLKRVLETHTKALMVLPFISLAREK 79
Query: 120 YQSLAKAA 127
+L + A
Sbjct: 80 LNALQEVA 87
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57
++ V S PTS GK+LV E+L++K + A+ +LP+ISL EK +L + A
Sbjct: 35 RSLVYSAPTSAGKSLVAELLMLKRVLETHTKALMVLPFISLAREKLNALQEVA 87
>gi|302915813|ref|XP_003051717.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732656|gb|EEU46004.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 890
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 133
KN V PT GGK+LV ++L++K L+ K A+ +LPY++LV EK + L + +
Sbjct: 146 KNLVYCAPTGGGKSLVADVLMLKRILEEKGTKALLVLPYVALVQEKVRWLRNVVQGLRLA 205
Query: 134 LEVL 137
E +
Sbjct: 206 TETV 209
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63
KN V PT GGK+LV ++L++K L+ K A+ +LPY++LV EK + L + +
Sbjct: 146 KNLVYCAPTGGGKSLVADVLMLKRILEEKGTKALLVLPYVALVQEKVRWLRNVVQGLRLA 205
Query: 64 LE 65
E
Sbjct: 206 TE 207
>gi|440291188|gb|ELP84457.1| DNA polymerase theta, putative [Entamoeba invadens IP1]
Length = 1134
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + +CLE + +N V S PTS GKTLV E+L++ Q+ I+I+PY+SL +
Sbjct: 143 FPWQVECLEKSEVLAGKRNFVYSAPTSAGKTLVSEMLMVHRYCQTQRKTIYIVPYVSLGN 202
Query: 118 EKYQSLAK 125
EK + A+
Sbjct: 203 EKAKYFAE 210
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+N V S PTS GKTLV E+L++ Q+ I+I+PY+SL +EK + A+
Sbjct: 160 RNFVYSAPTSAGKTLVSEMLMVHRYCQTQRKTIYIVPYVSLGNEKAKYFAE 210
>gi|358391463|gb|EHK40867.1| hypothetical protein TRIATDRAFT_204552 [Trichoderma atroviride IMI
206040]
Length = 964
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63
KN V PT GGK+LV ++L++K ++ + A+ ILPY++LV EK + L +
Sbjct: 157 KNLVYCAPTGGGKSLVADLLMLKRVMEEPETKALLILPYVALVQEKVRWLRSVVQGLSAT 216
Query: 64 LEGKCLE 70
L+ + LE
Sbjct: 217 LDPEALE 223
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
KN V PT GGK+LV ++L++K ++ + A+ ILPY++LV EK + L
Sbjct: 157 KNLVYCAPTGGGKSLVADLLMLKRVMEEPETKALLILPYVALVQEKVRWL 206
>gi|406866261|gb|EKD19301.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 803
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
N V + PT GGK+LV +IL++K+ + K A+ +LPY++LV EK + L K E
Sbjct: 155 NLVYTAPTGGGKSLVADILMLKKVIGSSGKKALLVLPYVALVQEKLKWLRKVVE 208
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
N V + PT GGK+LV +IL++K+ + K A+ +LPY++LV EK + L K E
Sbjct: 155 NLVYTAPTGGGKSLVADILMLKKVIGSSGKKALLVLPYVALVQEKLKWLRKVVE 208
>gi|350296152|gb|EGZ77129.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 1061
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P +SL H Y+ + F + + +CL + +KN V S PT GGK+L
Sbjct: 207 PLLSLSHPAYKLPKQLVANFASLGIKTIYPWQKQCLLGPGLLSGDKNLVYSAPTGGGKSL 266
Query: 90 VGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSL 123
V ++L++K + + AI +LPY++LV EK + L
Sbjct: 267 VADLLMLKRVLDDPAGEAKAILVLPYVALVQEKVRWL 303
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSL 53
+KN V S PT GGK+LV ++L++K + + AI +LPY++LV EK + L
Sbjct: 251 DKNLVYSAPTGGGKSLVADLLMLKRVLDDPAGEAKAILVLPYVALVQEKVRWL 303
>gi|336464070|gb|EGO52310.1| hypothetical protein NEUTE1DRAFT_90455 [Neurospora tetrasperma FGSC
2508]
Length = 902
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P +SL H Y+ + F + + +CL + +KN V S PT GGK+L
Sbjct: 49 PLLSLSHPAYKLPKQLVANFASLGIKTIYPWQKQCLLGPGLLSGDKNLVYSAPTGGGKSL 108
Query: 90 VGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSL 123
V ++L++K + + AI +LPY++LV EK + L
Sbjct: 109 VADLLMLKRVLDDPAGEAKAILVLPYVALVQEKVRWL 145
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSL 53
+KN V S PT GGK+LV ++L++K + + AI +LPY++LV EK + L
Sbjct: 93 DKNLVYSAPTGGGKSLVADLLMLKRVLDDPAGEAKAILVLPYVALVQEKVRWL 145
>gi|407044700|gb|EKE42769.1| DEAD/DEAH box helicase domain containing protein [Entamoeba
nuttalli P19]
Length = 848
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK + + + K ++
Sbjct: 114 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEKEEYFQEIFKSIKINIK 173
Query: 66 GKCLEMIQNKNCVLSIPT-SGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
G + +K + I T G ++ +++ E K ++ ++ I+ I ++ +K +
Sbjct: 174 GYFQNRVIDKEFDIGICTIEKGNGIINKLI---EEKSIEEVSLIIIDEIHMIFDKRRG 228
>gi|432328552|ref|YP_007246696.1| superfamily II helicase [Aciduliprofundum sp. MAR08-339]
gi|432135261|gb|AGB04530.1| superfamily II helicase [Aciduliprofundum sp. MAR08-339]
Length = 699
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ + KN V++IPT+ GKTLVG I I++ K+ KS ++I+P +L EKY+ L +
Sbjct: 34 KLFKGKNLVVAIPTASGKTLVGYIAILRAFKMGLKS-VYIVPLRALAMEKYEELKR 88
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ + KN V++IPT+ GKTLVG I I++ K+ KS ++I+P +L EKY+ L +
Sbjct: 35 LFKGKNLVVAIPTASGKTLVGYIAILRAFKMGLKS-VYIVPLRALAMEKYEELKR 88
>gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon
pisum]
Length = 1691
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 62 FYLEGKCLE---MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
F + +CL ++ +N V S PTS GKT+V E+L M+ + + K + ILP++S+V E
Sbjct: 30 FPWQVECLTSDGVLDGRNLVYSAPTSAGKTMVAELLTMQTVLERDKKVLIILPFVSVVRE 89
Query: 119 K 119
K
Sbjct: 90 K 90
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ +N V S PTS GKT+V E+L M+ + + K + ILP++S+V EK
Sbjct: 42 VLDGRNLVYSAPTSAGKTMVAELLTMQTVLERDKKVLIILPFVSVVREK 90
>gi|367019870|ref|XP_003659220.1| hypothetical protein MYCTH_2114843 [Myceliophthora thermophila ATCC
42464]
gi|347006487|gb|AEO53975.1| hypothetical protein MYCTH_2114843 [Myceliophthora thermophila ATCC
42464]
Length = 940
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 53
KN V S PT GGK+LV ++L+++ L+ + AI +LPY++LV EK + L
Sbjct: 164 KNLVYSAPTGGGKSLVADVLMLRRVLEDRAAKAIVVLPYVALVQEKVRWL 213
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
KN V S PT GGK+LV ++L+++ L+ + AI +LPY++LV EK + L
Sbjct: 164 KNLVYSAPTGGGKSLVADVLMLRRVLEDRAAKAIVVLPYVALVQEKVRWL 213
>gi|67471598|ref|XP_651740.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56468512|gb|EAL46353.1| hypothetical protein EHI_007040 [Entamoeba histolytica HM-1:IMSS]
Length = 848
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK + + + K ++
Sbjct: 114 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEKEEYFQEILKSIKINIK 173
Query: 66 G 66
G
Sbjct: 174 G 174
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK
Sbjct: 114 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEK 157
>gi|449708550|gb|EMD47993.1| DNA double strand break repair Rad50 ATPase, putative [Entamoeba
histolytica KU27]
Length = 848
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK + + + K ++
Sbjct: 114 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEKEEYFQEILKSIKINIK 173
Query: 66 G 66
G
Sbjct: 174 G 174
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK
Sbjct: 114 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEK 157
>gi|375082786|ref|ZP_09729832.1| ski2-like helicase [Thermococcus litoralis DSM 5473]
gi|374742483|gb|EHR78875.1| ski2-like helicase [Thermococcus litoralis DSM 5473]
Length = 718
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 7/63 (11%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ KN +L+IPT+ GKTLV EI+++ ++ + A++++P +L EKY+ EF
Sbjct: 39 VLNGKNLILAIPTASGKTLVAEIVMINKILREGGKAVYLVPLKALAEEKYK-------EF 91
Query: 131 KFY 133
KF+
Sbjct: 92 KFW 94
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 7/63 (11%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ KN +L+IPT+ GKTLV EI+++ ++ + A++++P +L EKY+ EF
Sbjct: 39 VLNGKNLILAIPTASGKTLVAEIVMINKILREGGKAVYLVPLKALAEEKYK-------EF 91
Query: 61 KFY 63
KF+
Sbjct: 92 KFW 94
>gi|183233059|ref|XP_001913798.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|169801760|gb|EDS89427.1| hypothetical protein EHI_140380, partial [Entamoeba histolytica
HM-1:IMSS]
Length = 202
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK + + + K ++
Sbjct: 114 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEKEEYFQEILKSIKINIK 173
Query: 66 G 66
G
Sbjct: 174 G 174
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
N V S PTS GKTLV EIL+++ QK I+I+PY+S+ EK
Sbjct: 114 NLVYSAPTSSGKTLVSEILMIERYCQTQKKMIYIVPYVSMAQEK 157
>gi|356554501|ref|XP_003545584.1| PREDICTED: DNA polymerase theta-like [Glycine max]
Length = 2147
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++Q +N V TS GK+ V EIL+++ + I K A+ +LPY+S+ EK + L +
Sbjct: 502 VLQRRNLVYCASTSAGKSFVAEILMLRRVIITGKMALLVLPYVSICAEKAEHLER 556
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++Q +N V TS GK+ V EIL+++ + I K A+ +LPY+S+ EK + L +
Sbjct: 502 VLQRRNLVYCASTSAGKSFVAEILMLRRVIITGKMALLVLPYVSICAEKAEHLER 556
>gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia]
gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia]
Length = 2006
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ ++ N V S PTS GKTLV EI+++K + + K + ILP+IS+V EK
Sbjct: 242 LFEHCNLVYSAPTSAGKTLVSEIMMLKTVLERGKKVLLILPFISVVREK 290
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ ++ N V S PTS GKTLV EI+++K + + K + ILP+IS+V EK
Sbjct: 242 LFEHCNLVYSAPTSAGKTLVSEIMMLKTVLERGKKVLLILPFISVVREK 290
>gi|83767815|dbj|BAE57954.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 971
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 8/67 (11%)
Query: 64 LEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQS 122
LEGK K+ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK +
Sbjct: 174 LEGK-------KHLVYTAPTGGGKSLVADVLMLKRIIENPSRKAILVLPYVALVQEKLKW 226
Query: 123 LAKAAEE 129
L + ++
Sbjct: 227 LRRIVQD 233
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
K+ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 178 KHLVYTAPTGGGKSLVADVLMLKRIIENPSRKAILVLPYVALVQEKLKWLRRIVQD 233
>gi|317144178|ref|XP_001819956.2| DNA-directed DNA polymerase theta [Aspergillus oryzae RIB40]
Length = 935
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 8/67 (11%)
Query: 64 LEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQS 122
LEGK K+ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK +
Sbjct: 149 LEGK-------KHLVYTAPTGGGKSLVADVLMLKRIIENPSRKAILVLPYVALVQEKLKW 201
Query: 123 LAKAAEE 129
L + ++
Sbjct: 202 LRRIVQD 208
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
K+ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 153 KHLVYTAPTGGGKSLVADVLMLKRIIENPSRKAILVLPYVALVQEKLKWLRRIVQD 208
>gi|238486540|ref|XP_002374508.1| DNA-directed DNA polymerase theta, putative [Aspergillus flavus
NRRL3357]
gi|220699387|gb|EED55726.1| DNA-directed DNA polymerase theta, putative [Aspergillus flavus
NRRL3357]
Length = 935
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 8/67 (11%)
Query: 64 LEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQS 122
LEGK K+ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK +
Sbjct: 149 LEGK-------KHLVYTAPTGGGKSLVADVLMLKRIIENPSRKAILVLPYVALVQEKLKW 201
Query: 123 LAKAAEE 129
L + ++
Sbjct: 202 LRRIVQD 208
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
K+ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 153 KHLVYTAPTGGGKSLVADVLMLKRIIENPSRKAILVLPYVALVQEKLKWLRRIVQD 208
>gi|195571337|ref|XP_002103660.1| GD20545 [Drosophila simulans]
gi|194199587|gb|EDX13163.1| GD20545 [Drosophila simulans]
Length = 1025
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ ++ N V S PTS GKTLV EI+++K + + K + ILP+IS+V EK
Sbjct: 242 LFEHCNLVYSAPTSAGKTLVSEIMMLKTVLERGKKVLLILPFISVVREK 290
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ ++ N V S PTS GKTLV EI+++K + + K + ILP+IS+V EK
Sbjct: 242 LFEHCNLVYSAPTSAGKTLVSEIMMLKTVLERGKKVLLILPFISVVREK 290
>gi|384249601|gb|EIE23082.1| P-loop containing nucleoside triphosphate hydrolase protein,
partial [Coccomyxa subellipsoidea C-169]
Length = 398
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS----------AIFILPYISLVHEK 49
V N V PTSGGK+LV E+L+++ L +K A+F+LPYIS+V EK
Sbjct: 13 VDGSNLVYCAPTSGGKSLVAEVLMLRRLLATRKPGARFTRNKQFALFVLPYISVVAEK 70
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS----------AIFILPYISLVHEK 119
+ N V PTSGGK+LV E+L+++ L +K A+F+LPYIS+V EK
Sbjct: 13 VDGSNLVYCAPTSGGKSLVAEVLMLRRLLATRKPGARFTRNKQFALFVLPYISVVAEK 70
>gi|391874324|gb|EIT83230.1| DNA polymerase theta/eta, DEAD-box superfamily [Aspergillus oryzae
3.042]
Length = 960
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 8/67 (11%)
Query: 64 LEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQS 122
LEGK K+ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK +
Sbjct: 174 LEGK-------KHLVYTAPTGGGKSLVADVLMLKRIIENPSRKAILVLPYVALVQEKLKW 226
Query: 123 LAKAAEE 129
L + ++
Sbjct: 227 LRRIVQD 233
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
K+ V + PT GGK+LV ++L++K ++ + AI +LPY++LV EK + L + ++
Sbjct: 178 KHLVYTAPTGGGKSLVADVLMLKRIIENPSRKAILVLPYVALVQEKLKWLRRIVQD 233
>gi|242398904|ref|YP_002994328.1| ski2-type helicase [Thermococcus sibiricus MM 739]
gi|242265297|gb|ACS89979.1| Putative ski2-type helicase [Thermococcus sibiricus MM 739]
Length = 744
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 7/64 (10%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
E+++ KN VL+IPT+ GKTLV EI+++ ++ + ++++P +L EKY+ E
Sbjct: 58 EVLKGKNLVLAIPTASGKTLVAEIVMINKILREGGKTVYLVPLKALAEEKYK-------E 110
Query: 130 FKFY 133
FKF+
Sbjct: 111 FKFW 114
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 7/63 (11%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN VL+IPT+ GKTLV EI+++ ++ + ++++P +L EKY+ EF
Sbjct: 59 VLKGKNLVLAIPTASGKTLVAEIVMINKILREGGKTVYLVPLKALAEEKYK-------EF 111
Query: 61 KFY 63
KF+
Sbjct: 112 KFW 114
>gi|164424270|ref|XP_958186.2| hypothetical protein NCU07411 [Neurospora crassa OR74A]
gi|157070445|gb|EAA28950.2| hypothetical protein NCU07411 [Neurospora crassa OR74A]
Length = 907
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P +SL H Y+ + F + + +CL + +KN V S PT GGK+L
Sbjct: 49 PLLSLSHPVYKLPKQLVANFASLGIKTIYPWQKQCLLGPGLLSGDKNLVYSAPTGGGKSL 108
Query: 90 VGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSL 123
V ++L++K + + AI +LPY++LV EK + L
Sbjct: 109 VADLLMLKRVLDDPAGEAKAILVLPYVALVQEKVRWL 145
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSL 53
+KN V S PT GGK+LV ++L++K + + AI +LPY++LV EK + L
Sbjct: 93 DKNLVYSAPTGGGKSLVADLLMLKRVLDDPAGEAKAILVLPYVALVQEKVRWL 145
>gi|341582935|ref|YP_004763427.1| ski2-like helicase [Thermococcus sp. 4557]
gi|340810593|gb|AEK73750.1| ski2-like helicase [Thermococcus sp. 4557]
Length = 726
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKE 90
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKE 90
>gi|340519993|gb|EGR50230.1| predicted protein [Trichoderma reesei QM6a]
Length = 907
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 12/97 (12%)
Query: 39 ILPYISLVHEKYQSLAKAAEEFK-------FYLEGKCLE----MIQNKNCVLSIPTSGGK 87
I P +SL H Y+ + F + + CL+ + +KN V PT GGK
Sbjct: 124 IDPELSLAHPVYKLPPQLVHNFASLGIKQIYPWQKSCLKGPGLLTGDKNLVYCAPTGGGK 183
Query: 88 TLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
+LV ++L+++ ++ + A+ ILPY++LV EK + L
Sbjct: 184 SLVADLLMLRRIIEEPETKALLILPYVALVQEKVRWL 220
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
+ +KN V PT GGK+LV ++L+++ ++ + A+ ILPY++LV EK + L +
Sbjct: 167 LTGDKNLVYCAPTGGGKSLVADLLMLRRIIEEPETKALLILPYVALVQEKVRWLRTVVQG 226
Query: 60 FKFYLEGKCLEMIQNKNCVLSI-PTSGGKTLVG 91
++ LE Q N + + P G +VG
Sbjct: 227 LAPNIDPGVLEK-QKANSIWRLRPDHGSLRVVG 258
>gi|409095959|ref|ZP_11215983.1| ski2-like helicase [Thermococcus zilligii AN1]
Length = 726
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 37/53 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIIMVNKLLKEGGKAVYLVPLKALAEEKYREF 88
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 37/53 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIIMVNKLLKEGGKAVYLVPLKALAEEKYREF 88
>gi|378728180|gb|EHY54639.1| DNA polymerase theta subunit [Exophiala dermatitidis NIH/UT8656]
Length = 927
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 41 PYISLVHEKYQSLAKAAEEFK-------FYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P ++L H Y A+ E F + + CL + +N V + PT GGK+L
Sbjct: 109 PLLTLGHAAYGLPAQLIENFAALGVHAIYPWQSSCLLGKGLLTGEQNLVYTAPTGGGKSL 168
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
V ++L++K + + AI +LPY++LV EK + L
Sbjct: 169 VADVLLLKRIIDNPGQKAILVLPYVALVQEKLRWL 203
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 53
+N V + PT GGK+LV ++L++K + + AI +LPY++LV EK + L
Sbjct: 154 QNLVYTAPTGGGKSLVADVLLLKRIIDNPGQKAILVLPYVALVQEKLRWL 203
>gi|57641267|ref|YP_183745.1| RNA helicase Ski2-like protein [Thermococcus kodakarensis KOD1]
gi|68052052|sp|Q5JGV6.1|HELS_PYRKO RecName: Full=Putative ski2-type helicase; Contains: RecName:
Full=Endonuclease PI-PkoHel; AltName: Full=Pko Hel
intein
gi|57159591|dbj|BAD85521.1| RNA helicase Ski2 homolog [Thermococcus kodakarensis KOD1]
Length = 1125
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLSEGGKAVYLVPLKALAEEKYREFKE 90
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLSEGGKAVYLVPLKALAEEKYREFKE 90
>gi|358377966|gb|EHK15649.1| hypothetical protein TRIVIDRAFT_185105 [Trichoderma virens Gv29-8]
Length = 1015
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63
KN V PT GGK+LV ++L++K ++ + A+ ILPY++LV EK + L +
Sbjct: 143 KNLVYCAPTGGGKSLVADLLMLKRIMEEPETKALLILPYVALVQEKVRWLRTVVQGLTAN 202
Query: 64 LEGKCLE 70
L+ + LE
Sbjct: 203 LDPEALE 209
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
KN V PT GGK+LV ++L++K ++ + A+ ILPY++LV EK + L
Sbjct: 143 KNLVYCAPTGGGKSLVADLLMLKRIMEEPETKALLILPYVALVQEKVRWL 192
>gi|313217992|emb|CBY41348.1| unnamed protein product [Oikopleura dioica]
Length = 211
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 62 FYLEGKCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ + CL M I++ N + S+PTS GK+LV E+ +++ L ++ K+ + +LP++S+V E
Sbjct: 142 YKWQEDCLRMKKVIKSANLIFSLPTSAGKSLVAEVHLLRHL-LEGKNGLLVLPFVSIVQE 200
Query: 119 K 119
+
Sbjct: 201 R 201
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++++ N + S+PTS GK+LV E+ +++ L ++ K+ + +LP++S+V E+
Sbjct: 154 VIKSANLIFSLPTSAGKSLVAEVHLLRHL-LEGKNGLLVLPFVSIVQER 201
>gi|398353823|ref|YP_006399287.1| ski2-type helicase [Sinorhizobium fredii USDA 257]
gi|390129149|gb|AFL52530.1| putative ski2-type helicase [Sinorhizobium fredii USDA 257]
Length = 1034
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++Q K+ ++S PTS GKT+VGE+ ++++ + +K AIF+LP +LV +K + K F
Sbjct: 302 ILQGKHLLVSAPTSSGKTMVGELAALRQV-LDRKRAIFLLPLKALVADKRRHFEKVYGGF 360
Query: 131 KFYLEVLE 138
L +LE
Sbjct: 361 G--LRILE 366
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++Q K+ ++S PTS GKT+VGE+ ++++ + +K AIF+LP +LV +K + K
Sbjct: 302 ILQGKHLLVSAPTSSGKTMVGELAALRQV-LDRKRAIFLLPLKALVADKRRHFEK 355
>gi|170056634|ref|XP_001864118.1| DNA polymerase theta [Culex quinquefasciatus]
gi|167876215|gb|EDS39598.1| DNA polymerase theta [Culex quinquefasciatus]
Length = 479
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 62 FYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
F + CL ++ N V S PTSGGKT+V E L+ K + +++ A+ ILP++++
Sbjct: 409 FQWQADCLANAKVILDCANLVYSAPTSGGKTIVSEFLVAKTVVERKRKAVVILPFVAVAR 468
Query: 118 EK 119
EK
Sbjct: 469 EK 470
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
N V S PTSGGKT+V E L+ K + +++ A+ ILP++++ EK
Sbjct: 427 NLVYSAPTSGGKTIVSEFLVAKTVVERKRKAVVILPFVAVAREK 470
>gi|212224494|ref|YP_002307730.1| ski2-like helicase [Thermococcus onnurineus NA1]
gi|212009451|gb|ACJ16833.1| DNA helicase [Thermococcus onnurineus NA1]
Length = 726
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKE 90
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKE 90
>gi|440463499|gb|ELQ33079.1| hypothetical protein OOU_Y34scaffold01005g105 [Magnaporthe oryzae
Y34]
gi|440481089|gb|ELQ61709.1| hypothetical protein OOW_P131scaffold01159g15 [Magnaporthe oryzae
P131]
Length = 776
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P +SL H Y Q+ A + + +CL + KN V + PT GGK+L
Sbjct: 111 PLLSLSHPVYALPTQLVQNFASLGIHSIYPWQKQCLLGPGLLRGEKNLVYTAPTGGGKSL 170
Query: 90 VGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAE 128
V ++L++K++ + + A+ +LPY++LV EK L + +
Sbjct: 171 VADVLMLKQVAAEPGAKALLVLPYVALVQEKVAWLRQVVQ 210
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAE 58
KN V + PT GGK+LV ++L++K++ + + A+ +LPY++LV EK L + +
Sbjct: 156 KNLVYTAPTGGGKSLVADVLMLKQVAAEPGAKALLVLPYVALVQEKVAWLRQVVQ 210
>gi|389626699|ref|XP_003711003.1| hypothetical protein MGG_15295 [Magnaporthe oryzae 70-15]
gi|351650532|gb|EHA58391.1| hypothetical protein MGG_15295 [Magnaporthe oryzae 70-15]
Length = 963
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P +SL H Y Q+ A + + +CL + KN V + PT GGK+L
Sbjct: 111 PLLSLSHPVYALPTQLVQNFASLGIHSIYPWQKQCLLGPGLLRGEKNLVYTAPTGGGKSL 170
Query: 90 VGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAE 128
V ++L++K++ + + A+ +LPY++LV EK L + +
Sbjct: 171 VADVLMLKQVAAEPGAKALLVLPYVALVQEKVAWLRQVVQ 210
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAE 58
KN V + PT GGK+LV ++L++K++ + + A+ +LPY++LV EK L + +
Sbjct: 156 KNLVYTAPTGGGKSLVADVLMLKQVAAEPGAKALLVLPYVALVQEKVAWLRQVVQ 210
>gi|223478715|ref|YP_002583268.1| DEAD/DEAH box helicase [Thermococcus sp. AM4]
gi|214033941|gb|EEB74767.1| DEAD/DEAH box helicase domain protein [Thermococcus sp. AM4]
Length = 720
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKE 90
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKE 90
>gi|432329628|ref|YP_007247771.1| superfamily II helicase [Methanoregula formicicum SMSP]
gi|432136337|gb|AGB01264.1| superfamily II helicase [Methanoregula formicicum SMSP]
Length = 720
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 47 HEKYQSLAKAAEEFKFYLEGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
H K Q LAK + + + +C+E M + +N +++IPT+ GKTL+ E+ + + K K
Sbjct: 11 HLKQQYLAKGMQVL-YPPQAECVERGMFEGRNLLVAIPTASGKTLIAEMAMHSHIARKGK 69
Query: 105 SAIFILPYISLVHEKYQSLA 124
++I+P +L EKY+ +
Sbjct: 70 -CLYIVPLKALASEKYEEFS 88
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
M + +N +++IPT+ GKTL+ E+ + + K K ++I+P +L EKY+ +
Sbjct: 36 MFEGRNLLVAIPTASGKTLIAEMAMHSHIARKGK-CLYIVPLKALASEKYEEFS 88
>gi|337284276|ref|YP_004623750.1| ski2-like helicase [Pyrococcus yayanosii CH1]
gi|334900210|gb|AEH24478.1| ski2-like helicase [Pyrococcus yayanosii CH1]
Length = 712
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
E++ KN +L+IPT+ GKTLV EI++++ + A++I+P +L EKY+
Sbjct: 35 EVLDGKNLLLAIPTASGKTLVAEIVMVERILRGAGKAVYIVPLKALAEEKYREF 88
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ KN +L+IPT+ GKTLV EI++++ + A++I+P +L EKY+
Sbjct: 36 VLDGKNLLLAIPTASGKTLVAEIVMVERILRGAGKAVYIVPLKALAEEKYREF 88
>gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group]
Length = 2044
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+++ +N V TS GK+ V EIL+++ + K AI +LPY+S+ EK + L + E
Sbjct: 505 VLEKRNLVYCASTSAGKSFVAEILMLRRILFSGKMAILVLPYVSICAEKAEHLEQLLE 562
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ +N V TS GK+ V EIL+++ + K AI +LPY+S+ EK + L + E
Sbjct: 505 VLEKRNLVYCASTSAGKSFVAEILMLRRILFSGKMAILVLPYVSICAEKAEHLEQLLE 562
>gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group]
Length = 1986
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+++ +N V TS GK+ V EIL+++ + K AI +LPY+S+ EK + L + E
Sbjct: 485 VLEKRNLVYCASTSAGKSFVAEILMLRRILFSGKMAILVLPYVSICAEKAEHLEQLLE 542
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ +N V TS GK+ V EIL+++ + K AI +LPY+S+ EK + L + E
Sbjct: 485 VLEKRNLVYCASTSAGKSFVAEILMLRRILFSGKMAILVLPYVSICAEKAEHLEQLLE 542
>gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica
Group]
Length = 2065
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+++ +N V TS GK+ V EIL+++ + K AI +LPY+S+ EK + L + E
Sbjct: 518 VLEKRNLVYCASTSAGKSFVAEILMLRRILFSGKMAILVLPYVSICAEKAEHLEQLLE 575
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ +N V TS GK+ V EIL+++ + K AI +LPY+S+ EK + L + E
Sbjct: 518 VLEKRNLVYCASTSAGKSFVAEILMLRRILFSGKMAILVLPYVSICAEKAEHLEQLLE 575
>gi|374578466|ref|ZP_09651562.1| superfamily II helicase [Bradyrhizobium sp. WSM471]
gi|374426787|gb|EHR06320.1| superfamily II helicase [Bradyrhizobium sp. WSM471]
Length = 1006
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 10/70 (14%)
Query: 55 KAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYIS 114
KA EF L+GK L ++ PTS GKTLVGE+ ++ + +K A+F+LPY +
Sbjct: 289 KAVNEFGV-LDGKSLLVVA--------PTSSGKTLVGELAAIRAVAAGKK-AVFLLPYRA 338
Query: 115 LVHEKYQSLA 124
LV+EK++ +
Sbjct: 339 LVNEKFEDFS 348
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
++ K+ ++ PTS GKTLVGE+ ++ + +K A+F+LPY +LV+EK++ +
Sbjct: 296 VLDGKSLLVVAPTSSGKTLVGELAAIRAVAAGKK-AVFLLPYRALVNEKFEDFS 348
>gi|121702745|ref|XP_001269637.1| DNA-directed DNA polymerase theta, putative [Aspergillus clavatus
NRRL 1]
gi|119397780|gb|EAW08211.1| DNA-directed DNA polymerase theta, putative [Aspergillus clavatus
NRRL 1]
Length = 940
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 60 FKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK-QKSAIFILPYISLVHE 118
F+ LEG+ ++ V + PT GGK+LV ++L++K + K + AI +LPY++LV E
Sbjct: 150 FRGLLEGE-------RHLVYTAPTGGGKSLVADVLMLKRIIEKPSRKAILVLPYVALVQE 202
Query: 119 KYQSLAKAAEE 129
K + L + ++
Sbjct: 203 KLKWLRRIVQD 213
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIK-QKSAIFILPYISLVHEKYQSLAKAAEE 59
++ V + PT GGK+LV ++L++K + K + AI +LPY++LV EK + L + ++
Sbjct: 158 RHLVYTAPTGGGKSLVADVLMLKRIIEKPSRKAILVLPYVALVQEKLKWLRRIVQD 213
>gi|256810263|ref|YP_003127632.1| DEAD/DEAH box helicase [Methanocaldococcus fervens AG86]
gi|256793463|gb|ACV24132.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
AG86]
Length = 696
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAKAA 57
+NKN ++SIPT+ GKTL+GE+ ++ L + K+ IFI+P +L EKY+
Sbjct: 33 KNKNFLISIPTASGKTLIGEMALINHLLDENKNPTNKKGIFIVPLKALASEKYEEFKNKY 92
Query: 58 EEF 60
E +
Sbjct: 93 ERY 95
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAKAA 127
+NKN ++SIPT+ GKTL+GE+ ++ L + K+ IFI+P +L EKY+
Sbjct: 33 KNKNFLISIPTASGKTLIGEMALINHLLDENKNPTNKKGIFIVPLKALASEKYEEFKNKY 92
Query: 128 EEF 130
E +
Sbjct: 93 ERY 95
>gi|156392405|ref|XP_001636039.1| predicted protein [Nematostella vectensis]
gi|156223138|gb|EDO43976.1| predicted protein [Nematostella vectensis]
Length = 1031
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 12/87 (13%)
Query: 51 QSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
QS AK A+E+ F L+ +CLE NK+ ++S TS GKT+V E I L+ KQ+
Sbjct: 117 QSAAKPAKEYPFILDPFQKEALRCLE--NNKSVLISAHTSAGKTVVAEYAIAMSLQKKQR 174
Query: 105 SAIFILPYISLVHEKYQSLAKAAEEFK 131
I+ P +L ++KY+ L EEF+
Sbjct: 175 -VIYTTPIKALSNQKYREL---YEEFQ 197
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
NK+ ++S TS GKT+V E I L+ KQ+ I+ P +L ++KY+ L EEF+
Sbjct: 143 NNKSVLISAHTSAGKTVVAEYAIAMSLQKKQR-VIYTTPIKALSNQKYREL---YEEFQ 197
>gi|123478324|ref|XP_001322325.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121905169|gb|EAY10102.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 1042
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAEEFK 131
Q KN VL +PTSGGKT+ ++ + + L+ + S I+ LP+++L +EKY K E++
Sbjct: 102 QGKNTVLLVPTSGGKTVAADLAVAQVLQENKNSKVIYTLPFVALANEKYTEYEKRFFEYQ 161
Query: 132 ---FYLEV 136
FY +
Sbjct: 162 VRPFYQNI 169
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAEEFK 61
Q KN VL +PTSGGKT+ ++ + + L+ + S I+ LP+++L +EKY K E++
Sbjct: 102 QGKNTVLLVPTSGGKTVAADLAVAQVLQENKNSKVIYTLPFVALANEKYTEYEKRFFEYQ 161
Query: 62 ---FY 63
FY
Sbjct: 162 VRPFY 166
>gi|154413466|ref|XP_001579763.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121913973|gb|EAY18777.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 857
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKY 50
QNK+C++ PTSGGKTL+ EI I + + + I+ LP+++L EKY
Sbjct: 82 QNKSCIVVSPTSGGKTLIAEIAIAQLIDDDPNARVIYALPFVALAMEKY 130
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKY 120
QNK+C++ PTSGGKTL+ EI I + + + I+ LP+++L EKY
Sbjct: 82 QNKSCIVVSPTSGGKTLIAEIAIAQLIDDDPNARVIYALPFVALAMEKY 130
>gi|15669311|ref|NP_248116.1| SKI2 family helicase [Methanocaldococcus jannaschii DSM 2661]
gi|18202572|sp|Q58524.1|HELS_METJA RecName: Full=Putative ski2-type helicase; Contains: RecName:
Full=Endonuclease PI-MjaHel; AltName: Full=Mja Hel
intein; AltName: Full=Mja Pep3 intein
gi|1499976|gb|AAB99126.1| putative SKI2-family helicase [Methanocaldococcus jannaschii DSM
2661]
Length = 1195
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAK 55
+ +NKN ++SIPT+ GKTL+GE+ ++ L K IFI+P +L EKY+
Sbjct: 29 LDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKS 88
Query: 56 AAEEF 60
E +
Sbjct: 89 KYERY 93
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
+NKN ++SIPT+ GKTL+GE+ ++ L K IFI+P +L EKY+
Sbjct: 31 KNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKSKY 90
Query: 128 EEF 130
E +
Sbjct: 91 ERY 93
>gi|254168485|ref|ZP_04875329.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
boonei T469]
gi|197622540|gb|EDY35111.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
boonei T469]
Length = 694
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ KN V++IPT+ GKTL+G I I++ K+ KS ++I+P +L EKY+ L +
Sbjct: 34 KLFSGKNLVVAIPTASGKTLIGYIAILRAFKMGLKS-VYIVPLRALAMEKYEELRR 88
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN V++IPT+ GKTL+G I I++ K+ KS ++I+P +L EKY+ L +
Sbjct: 35 LFSGKNLVVAIPTASGKTLIGYIAILRAFKMGLKS-VYIVPLRALAMEKYEELRR 88
>gi|254166516|ref|ZP_04873370.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
boonei T469]
gi|289596078|ref|YP_003482774.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|197624126|gb|EDY36687.1| Type III restriction enzyme, res subunit family [Aciduliprofundum
boonei T469]
gi|289533865|gb|ADD08212.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 694
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ KN V++IPT+ GKTL+G I I++ K+ KS ++I+P +L EKY+ L +
Sbjct: 34 KLFSGKNLVVAIPTASGKTLIGYIAILRAFKMGLKS-VYIVPLRALAMEKYEELRR 88
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN V++IPT+ GKTL+G I I++ K+ KS ++I+P +L EKY+ L +
Sbjct: 35 LFSGKNLVVAIPTASGKTLIGYIAILRAFKMGLKS-VYIVPLRALAMEKYEELRR 88
>gi|67524563|ref|XP_660343.1| hypothetical protein AN2739.2 [Aspergillus nidulans FGSC A4]
gi|40743851|gb|EAA63037.1| hypothetical protein AN2739.2 [Aspergillus nidulans FGSC A4]
gi|259486348|tpe|CBF84114.1| TPA: DNA-directed DNA polymerase theta, putative (AFU_orthologue;
AFUA_1G05260) [Aspergillus nidulans FGSC A4]
Length = 901
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63
++ + + PT GGK+LV ++L++K + + + AI +LPY++LV EK + L + ++ + Y
Sbjct: 153 RHLIYTAPTGGGKSLVADVLMLKRIIENPTRKAILVLPYVALVQEKLKWLRRIVQDVEKY 212
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 133
++ + + PT GGK+LV ++L++K + + + AI +LPY++LV EK + L + ++ + Y
Sbjct: 153 RHLIYTAPTGGGKSLVADVLMLKRIIENPTRKAILVLPYVALVQEKLKWLRRIVQDVEKY 212
>gi|115524507|ref|YP_781418.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris BisA53]
gi|115518454|gb|ABJ06438.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
BisA53]
Length = 1006
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 2 VQNKNCVLSI-PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
V N N +L + PTS GKTLVGE+ ++ + +K A+F+LPY +LV+EK++ +
Sbjct: 296 VLNGNSLLVVAPTSSGKTLVGELAAIRAVTAGKK-AVFLLPYRALVNEKFEDFS 348
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 72 IQNKNCVLSI-PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+ N N +L + PTS GKTLVGE+ ++ + +K A+F+LPY +LV+EK++ +
Sbjct: 296 VLNGNSLLVVAPTSSGKTLVGELAAIRAVTAGKK-AVFLLPYRALVNEKFEDFS 348
>gi|322701043|gb|EFY92794.1| helicase and polymerase containing protein tebichi [Metarhizium
acridum CQMa 102]
Length = 886
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 41 PYISLVHEKY-------QSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
P + L H+ Y +L+ + + + CL+ + +N V PT GGK+L
Sbjct: 110 PELDLAHQTYGLQRQIVSNLSSLGIKHIYPWQKNCLKGPGLLTGERNLVYCAPTGGGKSL 169
Query: 90 VGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
V ++L++K ++ A+ +LPY++LV EK L K + K
Sbjct: 170 VADLLMLKRVIEEAGTKALLVLPYVALVQEKVGWLRKVVQHVK 212
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+N V PT GGK+LV ++L++K ++ A+ +LPY++LV EK L K + K
Sbjct: 155 RNLVYCAPTGGGKSLVADLLMLKRVIEEAGTKALLVLPYVALVQEKVGWLRKVVQHVK 212
>gi|289191538|ref|YP_003457479.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
FS406-22]
gi|288937988|gb|ADC68743.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
FS406-22]
Length = 695
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAKAA 57
+NKN ++SIPT+ GKTL+GE+ ++ L + K+ IFI+P +L EKY+
Sbjct: 31 KNKNFLISIPTASGKTLIGEMALINHLLDENKNPTGKKGIFIVPLKALASEKYEEFKSKY 90
Query: 58 EEF 60
E +
Sbjct: 91 ERY 93
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAKAA 127
+NKN ++SIPT+ GKTL+GE+ ++ L + K+ IFI+P +L EKY+
Sbjct: 31 KNKNFLISIPTASGKTLIGEMALINHLLDENKNPTGKKGIFIVPLKALASEKYEEFKSKY 90
Query: 128 EEF 130
E +
Sbjct: 91 ERY 93
>gi|435849891|ref|YP_007301832.1| superfamily II helicase [Methanomethylovorans hollandica DSM 15978]
gi|433663379|gb|AGB50804.1| superfamily II helicase [Methanomethylovorans hollandica DSM 15978]
Length = 752
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
+++ KN + +IPT+ GKTL+ E+ ++K + I A++I+P I+L +EKYQ
Sbjct: 41 LLEGKNTLAAIPTASGKTLLAELAMLKHI-IDGGKALYIVPLIALANEKYQ 90
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 51
+++ KN + +IPT+ GKTL+ E+ ++K + I A++I+P I+L +EKYQ
Sbjct: 41 LLEGKNTLAAIPTASGKTLLAELAMLKHI-IDGGKALYIVPLIALANEKYQ 90
>gi|134045972|ref|YP_001097458.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C5]
gi|132663597|gb|ABO35243.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C5]
Length = 707
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 57
+NKN ++ IPT+ GKTL+GE+ + L K K AIFI+P +L EKY+ +
Sbjct: 30 KNKNFLVCIPTASGKTLIGEMAFINHLLDENKKPTNKKAIFIVPLKALATEKYEEFKEKY 89
Query: 58 EEF 60
E++
Sbjct: 90 EKY 92
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
+NKN ++ IPT+ GKTL+GE+ + L K K AIFI+P +L EKY+ +
Sbjct: 30 KNKNFLVCIPTASGKTLIGEMAFINHLLDENKKPTNKKAIFIVPLKALATEKYEEFKEKY 89
Query: 128 EEF 130
E++
Sbjct: 90 EKY 92
>gi|119189641|ref|XP_001245427.1| hypothetical protein CIMG_04868 [Coccidioides immitis RS]
Length = 780
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 8 VLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
V S PT GGK+LV ++L++K + K AI +LPY+++V EK + L + E
Sbjct: 34 VYSAPTGGGKSLVADVLMLKRIIDDPHKKAILVLPYVAIVQEKLKWLRRLVE 85
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 78 VLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
V S PT GGK+LV ++L++K + K AI +LPY+++V EK + L + E
Sbjct: 34 VYSAPTGGGKSLVADVLMLKRIIDDPHKKAILVLPYVAIVQEKLKWLRRLVE 85
>gi|70990852|ref|XP_750275.1| DNA-directed DNA polymerase theta [Aspergillus fumigatus Af293]
gi|66847907|gb|EAL88237.1| DNA-directed DNA polymerase theta, putative [Aspergillus fumigatus
Af293]
gi|159130748|gb|EDP55861.1| DNA-directed DNA polymerase theta, putative [Aspergillus fumigatus
A1163]
Length = 940
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAE 58
++ V + PT GGK+LV ++L++K + + + AI +LPY++LV EK + L + E
Sbjct: 157 RHLVYTAPTGGGKSLVADVLMLKRIIEHPSRKAILVLPYVALVQEKLKWLRRIVE 211
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAE 128
++ V + PT GGK+LV ++L++K + + + AI +LPY++LV EK + L + E
Sbjct: 157 RHLVYTAPTGGGKSLVADVLMLKRIIEHPSRKAILVLPYVALVQEKLKWLRRIVE 211
>gi|319785486|ref|YP_004144962.1| peptidase C14 caspase catalytic subunit p20 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|337270837|ref|YP_004614892.1| DEAD/DEAH box helicase domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|433777078|ref|YP_007307545.1| superfamily II helicase [Mesorhizobium australicum WSM2073]
gi|317171374|gb|ADV14912.1| peptidase C14 caspase catalytic subunit p20 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|336031147|gb|AEH90798.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
WSM2075]
gi|433669093|gb|AGB48169.1| superfamily II helicase [Mesorhizobium australicum WSM2073]
Length = 1003
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
++ K+ ++ PTS GKT VGE+ +K + + K A+F+LPY +LV+EK++ +
Sbjct: 295 VLDGKSLLVVAPTSAGKTFVGEMAALKAIG-EGKKAVFLLPYKALVNEKFEDFS 347
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
++ K+ ++ PTS GKT VGE+ +K + + K A+F+LPY +LV+EK++ +
Sbjct: 295 VLDGKSLLVVAPTSAGKTFVGEMAALKAIG-EGKKAVFLLPYKALVNEKFEDFS 347
>gi|119496737|ref|XP_001265142.1| DNA-directed DNA polymerase theta, putative [Neosartorya fischeri
NRRL 181]
gi|119413304|gb|EAW23245.1| DNA-directed DNA polymerase theta, putative [Neosartorya fischeri
NRRL 181]
Length = 940
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAE 58
++ V + PT GGK+LV ++L++K + + + AI +LPY++LV EK + L + E
Sbjct: 157 RHLVYTAPTGGGKSLVADVLMLKRIIEHPSRKAILVLPYVALVQEKLKWLRRIVE 211
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAE 128
++ V + PT GGK+LV ++L++K + + + AI +LPY++LV EK + L + E
Sbjct: 157 RHLVYTAPTGGGKSLVADVLMLKRIIEHPSRKAILVLPYVALVQEKLKWLRRIVE 211
>gi|240102927|ref|YP_002959236.1| ski2-like helicase [Thermococcus gammatolerans EJ3]
gi|239910481|gb|ACS33372.1| ski2-type helicase, putative [Thermococcus gammatolerans EJ3]
Length = 720
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ +N VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 37 LEGRNLVLAIPTASGKTLVSEIVMVNKLIQEGGKAVYLVPLKALAEEKYREFKE 90
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ +N VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 37 LEGRNLVLAIPTASGKTLVSEIVMVNKLIQEGGKAVYLVPLKALAEEKYREFKE 90
>gi|303271985|ref|XP_003055354.1| helicase/polymerase domain-containing protein [Micromonas pusilla
CCMP1545]
gi|226463328|gb|EEH60606.1| helicase/polymerase domain-containing protein [Micromonas pusilla
CCMP1545]
Length = 1996
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 17/68 (25%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKEL-------KIKQKS----------AIFILPYISLVH 47
KN V PTSGGK++V +IL+MK L K ++K+ AI +LP+ISL
Sbjct: 345 KNLVYCAPTSGGKSIVADILLMKRLVADGFGGKRREKNAVAADRGGNLAIIVLPFISLCD 404
Query: 48 EKYQSLAK 55
E+ LAK
Sbjct: 405 ERANELAK 412
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 17/68 (25%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKEL-------KIKQKS----------AIFILPYISLVH 117
KN V PTSGGK++V +IL+MK L K ++K+ AI +LP+ISL
Sbjct: 345 KNLVYCAPTSGGKSIVADILLMKRLVADGFGGKRREKNAVAADRGGNLAIIVLPFISLCD 404
Query: 118 EKYQSLAK 125
E+ LAK
Sbjct: 405 ERANELAK 412
>gi|390961611|ref|YP_006425445.1| Ski-2 like helicase [Thermococcus sp. CL1]
gi|390519919|gb|AFL95651.1| Ski-2 like helicase [Thermococcus sp. CL1]
Length = 726
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ +N VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLKGRNLVLAIPTASGKTLVSEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKE 90
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ +N VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLKGRNLVLAIPTASGKTLVSEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKE 90
>gi|359476049|ref|XP_002281624.2| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Vitis
vinifera]
Length = 2181
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 68 CLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
CL++ +Q +N V TS GK+ V EIL+++ L K A+ +LPY+S+ EK + L
Sbjct: 531 CLKVDGVLQKRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 589
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++Q +N V TS GK+ V EIL+++ L K A+ +LPY+S+ EK + L
Sbjct: 537 VLQKRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 589
>gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera]
Length = 2091
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 68 CLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
CL++ +Q +N V TS GK+ V EIL+++ L K A+ +LPY+S+ EK + L
Sbjct: 513 CLKVDGVLQKRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 571
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++Q +N V TS GK+ V EIL+++ L K A+ +LPY+S+ EK + L
Sbjct: 519 VLQKRNLVYCASTSAGKSFVAEILMLRRLISTGKMALLVLPYVSICAEKAEHL 571
>gi|85859512|ref|YP_461714.1| helicase [Syntrophus aciditrophicus SB]
gi|85722603|gb|ABC77546.1| helicase [Syntrophus aciditrophicus SB]
Length = 882
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
+++ K+ ++S PT+ GKT +GEI +K + +++K I+++P SL EKY K E
Sbjct: 39 QVLDGKSLIISSPTTSGKTFIGEIAAVKGV-MEKKKVIYLVPLKSLAEEKYLDFRKKYES 97
Query: 130 F 130
F
Sbjct: 98 F 98
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ K+ ++S PT+ GKT +GEI +K + +++K I+++P SL EKY K E F
Sbjct: 40 VLDGKSLIISSPTTSGKTFIGEIAAVKGV-MEKKKVIYLVPLKSLAEEKYLDFRKKYESF 98
>gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 2147
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 67 KCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+CL++ +Q +N V TS GK+ V E+L+++ + K A+ +LPY+S+ EK + L
Sbjct: 520 ECLQVDGVLQKRNLVYCASTSAGKSFVAEVLMLRRVITTGKMALLVLPYVSICAEKAEHL 579
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++Q +N V TS GK+ V E+L+++ + K A+ +LPY+S+ EK + L
Sbjct: 527 VLQKRNLVYCASTSAGKSFVAEVLMLRRVITTGKMALLVLPYVSICAEKAEHL 579
>gi|18977049|ref|NP_578406.1| ski2-like helicase [Pyrococcus furiosus DSM 3638]
gi|397651182|ref|YP_006491763.1| ski2-like helicase [Pyrococcus furiosus COM1]
gi|18202135|sp|O73946.1|HELS_PYRFU RecName: Full=Putative ski2-type helicase
gi|223365750|pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
gi|223365751|pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
gi|223365752|pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
gi|223365753|pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
gi|3374506|dbj|BAA32016.1| helicase [Pyrococcus furiosus]
gi|18892686|gb|AAL80801.1| helicase [Pyrococcus furiosus DSM 3638]
gi|393188773|gb|AFN03471.1| ski2-like helicase [Pyrococcus furiosus COM1]
Length = 720
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ KN ++SIPT+ GKTL+ EI ++ + + A++I+P +L EK+Q
Sbjct: 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEF 88
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ KN ++SIPT+ GKTL+ EI ++ + + A++I+P +L EK+Q
Sbjct: 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEF 88
>gi|221059673|ref|XP_002260482.1| RNA-helicase [Plasmodium knowlesi strain H]
gi|193810555|emb|CAQ41749.1| RNA-helicase, putative [Plasmodium knowlesi strain H]
Length = 2434
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++N +L PT GKT++GE+ I++ L +++ +++I P ++V+E+Y+S A +FK
Sbjct: 1433 DENILLGAPTGSGKTVIGELCILRNLLHHEREKSVYICPMKAIVNERYKSW---ASKFKN 1489
Query: 63 YLEGKCLEMIQNKN 76
L +E+ +KN
Sbjct: 1490 LLNKNVIELTGDKN 1503
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLA 124
++N +L PT GKT++GE+ I++ L +++ +++I P ++V+E+Y+S A
Sbjct: 1433 DENILLGAPTGSGKTVIGELCILRNLLHHEREKSVYICPMKAIVNERYKSWA 1484
>gi|154281325|ref|XP_001541475.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411654|gb|EDN07042.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 908
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 12 PTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
PT GGK+L+ ++L++K ++ K AI +LPY++LV EK + L + E
Sbjct: 143 PTGGGKSLIADVLMLKRVIEDPAKRAILVLPYVALVQEKLKWLRRVVE 190
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 82 PTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
PT GGK+L+ ++L++K ++ K AI +LPY++LV EK + L + E
Sbjct: 143 PTGGGKSLIADVLMLKRVIEDPAKRAILVLPYVALVQEKLKWLRRVVE 190
>gi|70944320|ref|XP_742103.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56520896|emb|CAH79803.1| hypothetical protein PC000529.03.0 [Plasmodium chabaudi chabaudi]
Length = 364
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 44 SLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMK 97
S VH K A +KF L+ +CLE +N++ ++S TS GKT++ E I
Sbjct: 113 SYVHNKLNESITPARTYKFELDTFQKKSIECLE--RNESVLVSAHTSAGKTVIAEYAIAL 170
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 171 GLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 200
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+N++ ++S TS GKT++ E I L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 146 RNESVLVSAHTSAGKTVIAEYAIALGLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 200
>gi|257077037|ref|ZP_05571398.1| ski2-like helicase [Ferroplasma acidarmanus fer1]
Length = 681
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+NKN ++S+PT+ GKTL+G I I + +K K +++I+P SL EK+ L
Sbjct: 35 ENKNVIVSVPTASGKTLIGYISIY-DTYLKGKKSMYIVPLRSLAMEKFSEL 84
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+NKN ++S+PT+ GKTL+G I I + +K K +++I+P SL EK+ L
Sbjct: 35 ENKNVIVSVPTASGKTLIGYISIY-DTYLKGKKSMYIVPLRSLAMEKFSEL 84
>gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii]
gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii]
Length = 2508
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 55 KAAEEFKFY-LEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 110
++ +F Y + +CL ++ +N V PTSGGK++V E+L ++ L K + +L
Sbjct: 856 RSGRQFDLYEWQAECLCQMGVLMGRNLVYCAPTSGGKSMVAEMLGIRRLLTTGKPFMLVL 915
Query: 111 PYISLVHEKYQSL 123
P+++L EK +L
Sbjct: 916 PFVALCAEKADAL 928
Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ +N V PTSGGK++V E+L ++ L K + +LP+++L EK +L
Sbjct: 876 VLMGRNLVYCAPTSGGKSMVAEMLGIRRLLTTGKPFMLVLPFVALCAEKADAL 928
>gi|441156004|ref|ZP_20966894.1| helicase [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440617807|gb|ELQ80896.1| helicase [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 1049
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 8/62 (12%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++ N ++S PTS GKT+VGE+ ++ + + K A+F+LP +LV+E+Y E+F
Sbjct: 311 LLEGMNVLVSAPTSTGKTMVGELSAIRAVT-EGKKAVFLLPTRALVNEQY-------EKF 362
Query: 131 KF 132
+F
Sbjct: 363 RF 364
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 8/62 (12%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ N ++S PTS GKT+VGE+ ++ + + K A+F+LP +LV+E+Y E+F
Sbjct: 311 LLEGMNVLVSAPTSTGKTMVGELSAIRAVT-EGKKAVFLLPTRALVNEQY-------EKF 362
Query: 61 KF 62
+F
Sbjct: 363 RF 364
>gi|156100705|ref|XP_001616046.1| ATP dependent RNA helicase [Plasmodium vivax Sal-1]
gi|148804920|gb|EDL46319.1| ATP dependent RNA helicase, putative [Plasmodium vivax]
Length = 1387
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 22 EILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNK 75
++L+++E + + S VH K A +KF L+ +CLE +N+
Sbjct: 222 DVLVLEEFRSDVNCIHKCIRPRSYVHNKLSETLTPARTYKFELDTFQKKSIECLE--RNE 279
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
+ ++S TS GKT++ E I L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 280 SVLVSAHTSAGKTVIAEYAIALGLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 331
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+N++ ++S TS GKT++ E I L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 277 RNESVLVSAHTSAGKTVIAEYAIALGLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 331
>gi|221058304|ref|XP_002261660.1| ATP-dependant RNA helicase [Plasmodium knowlesi strain H]
gi|194247665|emb|CAQ41065.1| ATP-dependant RNA helicase, putative [Plasmodium knowlesi strain H]
Length = 1332
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 44 SLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMK 97
S VH K A +KF L+ +CLE +N++ ++S TS GKT++ E I
Sbjct: 211 SYVHNKLSETLTPARTYKFELDTFQKKSIECLE--RNESVLVSAHTSAGKTVIAEYAIAL 268
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 269 GLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 298
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+N++ ++S TS GKT++ E I L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 244 RNESVLVSAHTSAGKTVIAEYAIALGLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 298
>gi|402083576|gb|EJT78594.1| hypothetical protein GGTG_03693 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 933
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSL 53
KN V + PT GGK+LV ++L++K++ S ++ +LPY++LV EK + L
Sbjct: 158 KNLVYTAPTGGGKSLVADLLMLKQIVQNPGSKSLLVLPYVALVQEKVRWL 207
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSL 123
KN V + PT GGK+LV ++L++K++ S ++ +LPY++LV EK + L
Sbjct: 158 KNLVYTAPTGGGKSLVADLLMLKQIVQNPGSKSLLVLPYVALVQEKVRWL 207
>gi|389584791|dbj|GAB67523.1| ATP dependent RNA helicase [Plasmodium cynomolgi strain B]
Length = 1401
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 12/116 (10%)
Query: 22 EILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNK 75
++L+++E + + S VH K A +KF L+ +CLE +N+
Sbjct: 210 DVLVLEEFRSDVNCIHKCIRPRSYVHNKLSETLTPARTYKFELDTFQKKSIECLE--RNE 267
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
+ ++S TS GKT++ E I L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 268 SVLVSAHTSAGKTVIAEYAIALGLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 319
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+N++ ++S TS GKT++ E I L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 265 RNESVLVSAHTSAGKTVIAEYAIALGLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 319
>gi|13541645|ref|NP_111333.1| ski2-like helicase [Thermoplasma volcanium GSS1]
gi|24418453|sp|Q97AI2.1|HELS_THEVO RecName: Full=Putative ski2-type helicase
gi|14325044|dbj|BAB59970.1| DNA helicase [Thermoplasma volcanium GSS1]
Length = 674
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN ++S+PT+ GKTL+ I + K K KS I+I+P SL EKY+ L++ E
Sbjct: 36 KGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKS-IYIVPLRSLAMEKYEELSRLRE 90
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+ KN ++S+PT+ GKTL+ I + K K KS I+I+P SL EKY+ L++ E
Sbjct: 36 KGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKS-IYIVPLRSLAMEKYEELSRLRE 90
>gi|308808137|ref|XP_003081379.1| helicase and polymerase containing protein TEBICHI (ISS)
[Ostreococcus tauri]
gi|116059841|emb|CAL55548.1| helicase and polymerase containing protein TEBICHI (ISS)
[Ostreococcus tauri]
Length = 1489
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 51 QSLAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS- 105
++LA+ + + +CL + + N + S PTSGGK+LV ++L+++ + K S
Sbjct: 26 EALARKGVRELYPWQAECLALPGVLDGSSNLLYSAPTSGGKSLVADVLLIRRFREKPGSI 85
Query: 106 AIFILPYISLVHEKYQSL 123
A+ +LP+++L E+ SL
Sbjct: 86 AMMVLPFVALCEERADSL 103
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSL 53
+ N + S PTSGGK+LV ++L+++ + K S A+ +LP+++L E+ SL
Sbjct: 53 SSNLLYSAPTSGGKSLVADVLLIRRFREKPGSIAMMVLPFVALCEERADSL 103
>gi|123456065|ref|XP_001315771.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121898458|gb|EAY03548.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 876
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 67 KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEKYQSLAK 125
K + Q K+CV PTSGGKTL+ EI I + L + I+ LP+++L EK+ K
Sbjct: 50 KTNDWAQRKSCVCVAPTSGGKTLIAEIAISQLLDDNPHAKIIYALPFVALASEKFLDFEK 109
Query: 126 AAEEFKFY 133
F+ Y
Sbjct: 110 ---RFRKY 114
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEKYQSLAKAAEEF 60
Q K+CV PTSGGKTL+ EI I + L + I+ LP+++L EK+ K F
Sbjct: 55 AQRKSCVCVAPTSGGKTLIAEIAISQLLDDNPHAKIIYALPFVALASEKFLDFEK---RF 111
Query: 61 KFY 63
+ Y
Sbjct: 112 RKY 114
>gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis]
gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis]
Length = 2154
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 68 CLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
CL++ +Q +N V TS GK+ V EIL+++ + +K A +LPY+S+ EK + L
Sbjct: 513 CLQVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVISTRKIAFLVLPYVSICAEKAEYL 571
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++Q +N V TS GK+ V EIL+++ + +K A +LPY+S+ EK + L
Sbjct: 519 VLQRRNLVYCASTSAGKSFVAEILMLRRVISTRKIAFLVLPYVSICAEKAEYL 571
>gi|389861672|ref|YP_006363912.1| DEAD/DEAH box helicase [Thermogladius cellulolyticus 1633]
gi|388526576|gb|AFK51774.1| DEAD/DEAH box helicase domain protein [Thermogladius
cellulolyticus 1633]
Length = 712
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
N V+S PT+ GKTLVGE+ I+K ++ K +++LP +L +EKY KA EE F
Sbjct: 44 NIVVSAPTASGKTLVGEMGIVKAVQEGGK-GVYLLPLRALANEKYDEF-KALEELGF 98
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
N V+S PT+ GKTLVGE+ I+K ++ K +++LP +L +EKY KA EE F
Sbjct: 44 NIVVSAPTASGKTLVGEMGIVKAVQEGGK-GVYLLPLRALANEKYDEF-KALEELGF 98
>gi|68076863|ref|XP_680351.1| ATP dependent RNA helicase [Plasmodium berghei strain ANKA]
gi|56501272|emb|CAH98487.1| ATP dependent RNA helicase, putative [Plasmodium berghei]
Length = 1299
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 44 SLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMK 97
S VH K A +KF L+ +CLE +N++ ++S TS GKT++ E I
Sbjct: 193 SYVHNKLSESITPARTYKFELDTFQKKSIECLE--RNESVLVSAHTSAGKTVIAEYAIAL 250
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 251 GLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 280
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+N++ ++S TS GKT++ E I L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 226 RNESVLVSAHTSAGKTVIAEYAIALGLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 280
>gi|83282250|ref|XP_729688.1| Homo sapiens KIAA0052 protein [Plasmodium yoelii yoelii 17XNL]
gi|23488188|gb|EAA21253.1| Homo sapiens KIAA0052 protein-related [Plasmodium yoelii yoelii]
Length = 1309
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 44 SLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMK 97
S VH K A +KF L+ +CLE +N++ ++S TS GKT++ E I
Sbjct: 193 SYVHNKLSESITPARTYKFELDTFQKKSIECLE--RNESVLVSAHTSAGKTVIAEYAIAL 250
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 251 GLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 280
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+N++ ++S TS GKT++ E I L+ KQ+ I+ P +L ++KY+ L +EEFK
Sbjct: 226 RNESVLVSAHTSAGKTVIAEYAIALGLRDKQR-VIYTSPIKALSNQKYRDL---SEEFK 280
>gi|269986982|gb|EEZ93258.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 549
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+ KN ++S PT+ GKTL+ E+ I+ + K +I++ P +L+ EKY K +
Sbjct: 38 LFNGKNLIVSAPTASGKTLIAEMAILNSF-LSGKKSIYLAPLRALISEKYDDFTKDNSDI 96
Query: 131 KFYLEV 136
K L +
Sbjct: 97 KAILSI 102
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ KN ++S PT+ GKTL+ E+ I+ + K +I++ P +L+ EKY K +
Sbjct: 38 LFNGKNLIVSAPTASGKTLIAEMAILNSF-LSGKKSIYLAPLRALISEKYDDFTKDNSDI 96
Query: 61 K 61
K
Sbjct: 97 K 97
>gi|145334203|ref|NP_001078482.1| DNA polymerase theta subunit [Arabidopsis thaliana]
gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis
thaliana]
gi|332660705|gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana]
Length = 2154
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 67 KCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+CL++ +Q +N V TS GK+ V E+L+++ + K A+ +LPY+S+ EK + L
Sbjct: 521 ECLQVDGVLQKRNLVYCASTSAGKSFVAEVLMLRRVIRTGKMALLVLPYVSICAEKAEHL 580
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++Q +N V TS GK+ V E+L+++ + K A+ +LPY+S+ EK + L
Sbjct: 528 VLQKRNLVYCASTSAGKSFVAEVLMLRRVIRTGKMALLVLPYVSICAEKAEHL 580
>gi|444319875|ref|XP_004180594.1| hypothetical protein TBLA_0E00120 [Tetrapisispora blattae CBS 6284]
gi|387513637|emb|CCH61075.1| hypothetical protein TBLA_0E00120 [Tetrapisispora blattae CBS 6284]
Length = 1297
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMK-----ELKIKQKSAIFILPYISLVHEKYQSLAK 55
+KNC++S PT GKT++ E+ IM+ + K+ ++I P SL +EKY S K
Sbjct: 198 DKNCIISAPTGSGKTVLFELAIMRLVKNSDYKMDNIKILYIAPTKSLCYEKYNSWGK 254
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMK-----ELKIKQKSAIFILPYISLVHEKYQSLAK 125
+KNC++S PT GKT++ E+ IM+ + K+ ++I P SL +EKY S K
Sbjct: 198 DKNCIISAPTGSGKTVLFELAIMRLVKNSDYKMDNIKILYIAPTKSLCYEKYNSWGK 254
>gi|218674784|ref|ZP_03524453.1| DEAD/DEAH box helicase domain-containing protein [Rhizobium etli
GR56]
Length = 1040
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ ++ ++S PTS GKT+VGE+ ++++ +++K AIF+LP +LV +K + K F
Sbjct: 306 ILDGEHLLVSAPTSSGKTMVGELAALRQV-VERKRAIFLLPLKALVADKRRHFEKVYGGF 364
Query: 131 KFYLEVLE 138
L +LE
Sbjct: 365 G--LRILE 370
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ ++ ++S PTS GKT+VGE+ ++++ +++K AIF+LP +LV +K + K
Sbjct: 306 ILDGEHLLVSAPTSSGKTMVGELAALRQV-VERKRAIFLLPLKALVADKRRHFEK 359
>gi|398346214|ref|ZP_10530917.1| DEAD/DEAH box helicase [Leptospira broomii str. 5399]
Length = 1021
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
++ K+ ++ PTS GKTL+GE+ + + + +K A F+LPY +LV+EKY+
Sbjct: 312 VLDGKSLLVVAPTSSGKTLIGELAAIPSVTLGKKVA-FLLPYRALVNEKYEDF 363
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ K+ ++ PTS GKTL+GE+ + + + +K A F+LPY +LV+EKY+
Sbjct: 312 VLDGKSLLVVAPTSSGKTLIGELAAIPSVTLGKKVA-FLLPYRALVNEKYEDF 363
>gi|291244315|ref|XP_002742043.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Saccoglossus kowalevskii]
Length = 1030
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 12/83 (14%)
Query: 55 KAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
KAA+E+ F L+ KCLE N++ ++S TS GKT+V E I L+ KQ+ I+
Sbjct: 117 KAAKEYPFILDPFQKEALKCLE--NNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQR-VIY 173
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ L EEF+
Sbjct: 174 TTPIKALSNQKYREL---YEEFQ 193
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+V E I L+ KQ+ I+ P +L ++KY+ L EEF+
Sbjct: 139 NNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQR-VIYTTPIKALSNQKYREL---YEEFQ 193
>gi|449442230|ref|XP_004138885.1| PREDICTED: DNA polymerase theta-like [Cucumis sativus]
Length = 2144
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 67 KCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+CL++ +Q +N V TS GK+ V EIL+++ + K A+ +LPY+S+ EK L
Sbjct: 517 ECLKVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVISTGKMALLVLPYVSICAEKAAHL 576
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++Q +N V TS GK+ V EIL+++ + K A+ +LPY+S+ EK L
Sbjct: 524 VLQRRNLVYCASTSAGKSFVAEILMLRRVISTGKMALLVLPYVSICAEKAAHL 576
>gi|296108824|ref|YP_003615773.1| DEAD/DEAH box helicase domain protein [methanocaldococcus
infernus ME]
gi|295433638|gb|ADG12809.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus
infernus ME]
Length = 670
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ KN ++SIPT GKT++ E+ ++ L + K K ++I+P +L EKY+ K E+F
Sbjct: 28 KKKNFLISIPTGAGKTVIAEMALINHLLLDKGKKGVYIVPLKALASEKYEEFKKKYEKF 86
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+ KN ++SIPT GKT++ E+ ++ L + K K ++I+P +L EKY+ K E+F
Sbjct: 28 KKKNFLISIPTGAGKTVIAEMALINHLLLDKGKKGVYIVPLKALASEKYEEFKKKYEKF 86
>gi|195109152|ref|XP_001999154.1| GI23225 [Drosophila mojavensis]
gi|193915748|gb|EDW14615.1| GI23225 [Drosophila mojavensis]
Length = 2178
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLE-GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE 98
LP L +E Y+SL K + + CL N N +L PT GKT+V EI I +
Sbjct: 1314 LPVTCLQNEVYESLYKFSHFNPIQTQIFHCLYHTDN-NVLLGAPTGSGKTIVAEIAIFRA 1372
Query: 99 LKIKQKS-AIFILPYISLVHEKYQSLAKAAEEFKFYLEVLE 138
L ++ KS ++I P +LV E+ + E L+V+E
Sbjct: 1373 LNLQPKSKVVYIAPLKALVKERIADWQQRFERSPLGLKVVE 1413
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEK 49
+ N +L PT GKT+V EI I + L ++ KS ++I P +LV E+
Sbjct: 1348 DNNVLLGAPTGSGKTIVAEIAIFRALNLQPKSKVVYIAPLKALVKER 1394
>gi|406985046|gb|EKE05923.1| hypothetical protein ACD_19C00146G0004, partial [uncultured
bacterium]
Length = 496
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++ ++ V+S PTS GKT++GE+ +K I +K A+F+ P +LV++KY+ + F
Sbjct: 301 VLRGESLVVSAPTSSGKTMIGELAALKG-AIDRKRALFLFPMKALVNDKYKYFIETYGSF 359
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ ++ V+S PTS GKT++GE+ +K I +K A+F+ P +LV++KY+ + F
Sbjct: 301 VLRGESLVVSAPTSSGKTMIGELAALKG-AIDRKRALFLFPMKALVNDKYKYFIETYGSF 359
>gi|134293067|ref|YP_001116803.1| DEAD/DEAH box helicase [Burkholderia vietnamiensis G4]
gi|134136224|gb|ABO57338.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 1002
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
PTS GKT++GE+ ++ + I K AIF+LPY ++V EK++ ++
Sbjct: 305 PTSSGKTMIGELAAIQSV-ITGKKAIFLLPYRAIVSEKFEEFSE 347
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 82 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
PTS GKT++GE+ ++ + I K AIF+LPY ++V EK++ ++
Sbjct: 305 PTSSGKTMIGELAAIQSV-ITGKKAIFLLPYRAIVSEKFEEFSE 347
>gi|161521250|ref|YP_001584677.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189352577|ref|YP_001948204.1| superfamily II helicase [Burkholderia multivorans ATCC 17616]
gi|160345300|gb|ABX18385.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189336599|dbj|BAG45668.1| superfamily II helicase [Burkholderia multivorans ATCC 17616]
Length = 1004
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
PTS GKT++GE+ ++ + I K AIF+LPY ++V EK++ ++
Sbjct: 307 PTSSGKTMIGELAAIQSV-ITGKKAIFLLPYRAIVSEKFEEFSE 349
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 82 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
PTS GKT++GE+ ++ + I K AIF+LPY ++V EK++ ++
Sbjct: 307 PTSSGKTMIGELAAIQSV-ITGKKAIFLLPYRAIVSEKFEEFSE 349
>gi|357150740|ref|XP_003575560.1| PREDICTED: uncharacterized protein LOC100823290 [Brachypodium
distachyon]
Length = 2057
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 62 FYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ L+ +CL +++ +N V TS GK+ V E+L+++ + AI +LPY+SL E
Sbjct: 503 YQLQVECLLVDGVLEKRNLVYCASTSAGKSFVAEVLMLRRILSSGNIAILVLPYVSLCAE 562
Query: 119 KYQSLAKAAE 128
K L + E
Sbjct: 563 KAAHLEQLLE 572
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ +N V TS GK+ V E+L+++ + AI +LPY+SL EK L + E
Sbjct: 515 VLEKRNLVYCASTSAGKSFVAEVLMLRRILSSGNIAILVLPYVSLCAEKAAHLEQLLE 572
>gi|341883952|gb|EGT39887.1| hypothetical protein CAEBREN_08588 [Caenorhabditis brenneri]
Length = 364
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
E +N++ + S PTS GK++V E+L K + K +F+LPYIS+ EK + +
Sbjct: 43 ENSENQHLIFSAPTSAGKSIVAELLAWK-VASTGKKVLFVLPYISVAREKLHQIQR 97
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+N++ + S PTS GK++V E+L K + K +F+LPYIS+ EK + +
Sbjct: 46 ENQHLIFSAPTSAGKSIVAELLAWK-VASTGKKVLFVLPYISVAREKLHQIQR 97
>gi|168021285|ref|XP_001763172.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685655|gb|EDQ72049.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1573
Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 67 KCLE---MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+CL+ ++ +N V TS GK+LV E+L+++ + K A+ +LPY++L EK L
Sbjct: 681 ECLQTDGVLDGRNLVYCASTSAGKSLVAELLMLRRVLSTGKKALLVLPYVTLCSEKANHL 740
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ +N V TS GK+LV E+L+++ + K A+ +LPY++L EK L
Sbjct: 688 VLDGRNLVYCASTSAGKSLVAELLMLRRVLSTGKKALLVLPYVTLCSEKANHL 740
>gi|195037008|ref|XP_001989957.1| GH19081 [Drosophila grimshawi]
gi|193894153|gb|EDV93019.1| GH19081 [Drosophila grimshawi]
Length = 2181
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLE-GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE 98
LP SL +E Y+SL K + CL N N +L PT GKT+V EI I +
Sbjct: 1318 LPVSSLENEIYESLYKFTHFNPIQTQIFHCLYHTDN-NVLLGAPTGSGKTIVAEIAIFRA 1376
Query: 99 LKIKQK-SAIFILPYISLVHEKYQSLAKAAEEFKFYLEVLE 138
L + K ++I P +LV E+ + E+ + L+V+E
Sbjct: 1377 LNLDPKCKVVYIAPLKALVKERIADWQQRFEQSELGLKVVE 1417
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ N +L PT GKT+V EI I + L + K ++I P +LV E+ + E+ +
Sbjct: 1352 DNNVLLGAPTGSGKTIVAEIAIFRALNLDPKCKVVYIAPLKALVKERIADWQQRFEQSEL 1411
Query: 63 YLE 65
L+
Sbjct: 1412 GLK 1414
>gi|374635115|ref|ZP_09706719.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
gi|373563305|gb|EHP89504.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
Length = 1024
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAK 55
+ ++KN ++ IPT+ GKTL+GE++++ L + K+ +FI+P +L EKY +
Sbjct: 33 LDKDKNFLICIPTASGKTLIGEMVLINHLLDENKTPTNKKGLFIVPLKALASEKYDEFRR 92
Query: 56 AAEEF 60
E++
Sbjct: 93 KYEKY 97
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAKAA 127
++KN ++ IPT+ GKTL+GE++++ L + K+ +FI+P +L EKY +
Sbjct: 35 KDKNFLICIPTASGKTLIGEMVLINHLLDENKTPTNKKGLFIVPLKALASEKYDEFRRKY 94
Query: 128 EEF 130
E++
Sbjct: 95 EKY 97
>gi|313233190|emb|CBY24305.1| unnamed protein product [Oikopleura dioica]
Length = 1902
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
N+N + + PTS GKTLV EILI + + K I + P++++ EKY
Sbjct: 39 NRNLIYAGPTSSGKTLVSEILIARRT-AEGKKVIVVFPFVAIAREKY 84
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
N+N + + PTS GKTLV EILI + + K I + P++++ EKY
Sbjct: 39 NRNLIYAGPTSSGKTLVSEILIARRT-AEGKKVIVVFPFVAIAREKY 84
>gi|124808786|ref|XP_001348408.1| DNA-directed DNA polymerase, putative [Plasmodium falciparum 3D7]
gi|23497301|gb|AAN36847.1|AE014819_58 DNA-directed DNA polymerase, putative [Plasmodium falciparum 3D7]
Length = 1236
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
N + PTSGGKTLV E+ I +E+K +K F+ P SL++EK
Sbjct: 85 NFICVAPTSGGKTLVTELFIFEEIKNGKKQIFFLFPLKSLINEK 128
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
N + PTSGGKTLV E+ I +E+K +K F+ P SL++EK
Sbjct: 85 NFICVAPTSGGKTLVTELFIFEEIKNGKKQIFFLFPLKSLINEK 128
>gi|88603707|ref|YP_503885.1| ski2-like helicase [Methanospirillum hungatei JF-1]
gi|88189169|gb|ABD42166.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
Length = 799
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 65 EGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ +C+E +++ KN ++SIPT+ GKTL+ E+ + + K ++I+P +L EKY
Sbjct: 28 QAECIEKGLLEGKNLLISIPTASGKTLLAEMAMWSRIAAGGK-CLYIVPLRALASEKYDE 86
Query: 123 LAK 125
+K
Sbjct: 87 FSK 89
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ KN ++SIPT+ GKTL+ E+ + + K ++I+P +L EKY +K
Sbjct: 36 LLEGKNLLISIPTASGKTLLAEMAMWSRIAAGGK-CLYIVPLRALASEKYDEFSK 89
>gi|323449193|gb|EGB05083.1| hypothetical protein AURANDRAFT_66735 [Aureococcus anophagefferens]
Length = 2360
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKEL--KIKQKSAIFILPYISLVHEKYQSLAK 125
++ + V + P SGGKT V E+LI K L + K++ A++++P SLV EK AK
Sbjct: 112 LEGGSLVYAAPASGGKTTVAELLIAKALWRRRKRRVALYVVPLKSLVEEKVGQFAK 167
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKEL--KIKQKSAIFILPYISLVHEKYQSLAK 55
++ + V + P SGGKT V E+LI K L + K++ A++++P SLV EK AK
Sbjct: 112 LEGGSLVYAAPASGGKTTVAELLIAKALWRRRKRRVALYVVPLKSLVEEKVGQFAK 167
>gi|11500032|ref|NP_071282.1| SKI2-family helicase [Archaeoglobus fulgidus DSM 4304]
Length = 691
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ KN +L++PT+ GKTL+ E+ +++E IK +++++P +L EKY+S K
Sbjct: 36 KVFSGKNLLLAMPTAAGKTLLAEMAMVRE-AIKGGKSLYVVPLRALAGEKYESFKK 90
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
KN +L++PT+ GKTL+ E+ +++E IK +++++P +L EKY+S K
Sbjct: 41 KNLLLAMPTAAGKTLLAEMAMVRE-AIKGGKSLYVVPLRALAGEKYESFKK 90
>gi|149242937|pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
gi|149242942|pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ KN +L++PT+ GKTL+ E+ +++E IK +++++P +L EKY+S K
Sbjct: 36 KVFSGKNLLLAMPTAAGKTLLAEMAMVRE-AIKGGKSLYVVPLRALAGEKYESFKK 90
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
KN +L++PT+ GKTL+ E+ +++E IK +++++P +L EKY+S K
Sbjct: 41 KNLLLAMPTAAGKTLLAEMAMVRE-AIKGGKSLYVVPLRALAGEKYESFKK 90
>gi|223938493|ref|ZP_03630386.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223892912|gb|EEF59380.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 853
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE+ + KN +L+ PT GK+LV L K L + K +I+ P +LV+EK+ +L
Sbjct: 40 ESAILELYEEKNVILNTPTGSGKSLVAAALHFKALA-QGKRSIYTCPIKALVNEKWMALC 98
Query: 125 K 125
+
Sbjct: 99 R 99
Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ + KN +L+ PT GK+LV L K L + K +I+ P +LV+EK+ +L +
Sbjct: 46 LYEEKNVILNTPTGSGKSLVAAALHFKALA-QGKRSIYTCPIKALVNEKWMALCR 99
>gi|384249808|gb|EIE23289.1| hypothetical protein COCSUDRAFT_42188 [Coccomyxa subellipsoidea
C-169]
Length = 1716
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSLAK 125
+++ ++ V S PTS GK+ V E+L+++ L + K A+ +LP++SL EK L +
Sbjct: 247 VLKGRSLVFSAPTSAGKSAVAEVLMLRRLCEPRTADKVALLVLPFVSLCAEKEAHLER 304
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL---KIKQKSAIFILPYISLVHEKYQSLAK 55
+++ ++ V S PTS GK+ V E+L+++ L + K A+ +LP++SL EK L +
Sbjct: 247 VLKGRSLVFSAPTSAGKSAVAEVLMLRRLCEPRTADKVALLVLPFVSLCAEKEAHLER 304
>gi|346322629|gb|EGX92228.1| DNA-directed DNA polymerase theta [Cordyceps militaris CM01]
Length = 871
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 5 KNCVLSIPTSGGKTLVGE----ILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
+N V PT GGK+LV + +L++K L ++ A+ +LPY++LV EK + L + E
Sbjct: 151 RNLVYCAPTGGGKSLVADSAVPVLMLKRILHSRESKALLVLPYVALVQEKVRWLRQLVEG 210
Query: 60 FKF 62
K
Sbjct: 211 LKL 213
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 75 KNCVLSIPTSGGKTLVGE----ILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
+N V PT GGK+LV + +L++K L ++ A+ +LPY++LV EK + L + E
Sbjct: 151 RNLVYCAPTGGGKSLVADSAVPVLMLKRILHSRESKALLVLPYVALVQEKVRWLRQLVEG 210
Query: 130 FKF 132
K
Sbjct: 211 LKL 213
>gi|300772939|ref|ZP_07082808.1| DEAD/DEAH box helicase domain protein [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759110|gb|EFK55937.1| DEAD/DEAH box helicase domain protein [Sphingobacterium
spiritivorum ATCC 33861]
Length = 1027
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++Q K+ V+S PTS GKT+VGE+ + + ++K A+F+LP +LV++K + + F
Sbjct: 301 ILQGKHLVVSAPTSSGKTMVGELAAIYGI-TQRKRAVFLLPLKALVNDKLKHFEETYASF 359
Query: 131 K 131
Sbjct: 360 D 360
Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++Q K+ V+S PTS GKT+VGE+ + + ++K A+F+LP +LV++K + + F
Sbjct: 301 ILQGKHLVVSAPTSSGKTMVGELAAIYGI-TQRKRAVFLLPLKALVNDKLKHFEETYASF 359
Query: 61 K 61
Sbjct: 360 D 360
>gi|340623794|ref|YP_004742247.1| DEAD/DEAH box helicase [Methanococcus maripaludis X1]
gi|339904062|gb|AEK19504.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis X1]
Length = 707
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 57
++KN ++ IPT+ GKTL+GE+ + L K K AIFI+P +L EK++ +
Sbjct: 30 KDKNFLVCIPTASGKTLIGEMAFINHLLDENKKPTNKKAIFIVPLKALATEKFEEFKEKY 89
Query: 58 EEF 60
E++
Sbjct: 90 EKY 92
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
++KN ++ IPT+ GKTL+GE+ + L K K AIFI+P +L EK++ +
Sbjct: 30 KDKNFLVCIPTASGKTLIGEMAFINHLLDENKKPTNKKAIFIVPLKALATEKFEEFKEKY 89
Query: 128 EEF 130
E++
Sbjct: 90 EKY 92
>gi|156100545|ref|XP_001616000.1| RNA helicase [Plasmodium vivax Sal-1]
gi|148804874|gb|EDL46273.1| RNA helicase, putative [Plasmodium vivax]
Length = 2467
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++N +L PT GKT++GE+ I++ L +++ A+++ P ++V+E+++S +FK
Sbjct: 1414 DENILLGAPTGSGKTVIGELCILRNLLHHEREKAVYVCPMKAIVNERHKSWTS---KFKN 1470
Query: 63 YLEGKCLEMIQNKN 76
L +E+ +KN
Sbjct: 1471 LLNKNVIELTGDKN 1484
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLA 124
++N +L PT GKT++GE+ I++ L +++ A+++ P ++V+E+++S
Sbjct: 1414 DENILLGAPTGSGKTVIGELCILRNLLHHEREKAVYVCPMKAIVNERHKSWT 1465
>gi|425773040|gb|EKV11415.1| DNA-directed DNA polymerase theta, putative [Penicillium digitatum
PHI26]
gi|425782185|gb|EKV20109.1| DNA-directed DNA polymerase theta, putative [Penicillium digitatum
Pd1]
Length = 940
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
++ V + PT GGK+LV ++L++K ++ + A+ +LPY++LV EK + + + ++
Sbjct: 165 RHLVYTAPTGGGKSLVADVLLLKRIIENPGRKALLVLPYVALVQEKLKWMRRIVQD 220
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++ V + PT GGK+LV ++L++K ++ + A+ +LPY++LV EK + + + ++
Sbjct: 165 RHLVYTAPTGGGKSLVADVLLLKRIIENPGRKALLVLPYVALVQEKLKWMRRIVQD 220
>gi|456737306|gb|EMF62013.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
EPM1]
Length = 1006
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 2 VQNKNCVLSI-PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
V + N +L + PTS GKT+VGE+ ++ + +K+A F+LPY +LV+EK++ +
Sbjct: 296 VLSGNSLLVVAPTSSGKTMVGEVAAIQAVTTGKKAA-FLLPYRALVNEKFEEFTE 349
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 82 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
PTS GKT+VGE+ ++ + +K+A F+LPY +LV+EK++ +
Sbjct: 307 PTSSGKTMVGEVAAIQAVTTGKKAA-FLLPYRALVNEKFEEFTE 349
>gi|159904947|ref|YP_001548609.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C6]
gi|159886440|gb|ABX01377.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C6]
Length = 707
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEI-----LIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ + KN ++ IPT+ GKTL+GE+ L+ +E K K AIFI+P +L EK++ +
Sbjct: 28 LDKTKNFLVCIPTASGKTLIGEMAFINNLLTEEKKPTGKKAIFIVPLKALATEKFEEFKE 87
Query: 56 AAEEF 60
E++
Sbjct: 88 KYEKY 92
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEI-----LIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
+ KN ++ IPT+ GKTL+GE+ L+ +E K K AIFI+P +L EK++ +
Sbjct: 30 KTKNFLVCIPTASGKTLIGEMAFINNLLTEEKKPTGKKAIFIVPLKALATEKFEEFKEKY 89
Query: 128 EEF 130
E++
Sbjct: 90 EKY 92
>gi|387875150|ref|YP_006305454.1| DEAD/DEAH box helicase [Mycobacterium sp. MOTT36Y]
gi|386788608|gb|AFJ34727.1| DEAD/DEAH box helicase [Mycobacterium sp. MOTT36Y]
Length = 1031
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ N V++ PTS GKT+VGE+ +K + ++ +F+LP +LV++KY+ +
Sbjct: 305 VLDGNNLVVTAPTSSGKTMVGELAAIKAAASRGRT-VFLLPMKALVNDKYEQFTR 358
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ N V++ PTS GKT+VGE+ +K + ++ +F+LP +LV++KY+ +
Sbjct: 305 VLDGNNLVVTAPTSSGKTMVGELAAIKAAASRGRT-VFLLPMKALVNDKYEQFTR 358
>gi|315231273|ref|YP_004071709.1| ski2-type helicase [Thermococcus barophilus MP]
gi|315184301|gb|ADT84486.1| putative ski2-type helicase [Thermococcus barophilus MP]
Length = 755
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
++ +N +L+IPT+ GKTLV EI+++ +L A++++P +L EKY+
Sbjct: 57 VLNGENLLLAIPTASGKTLVAEIVMLHKLFTGGGKAVYLVPLKALAEEKYREF 109
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ +N +L+IPT+ GKTLV EI+++ +L A++++P +L EKY+
Sbjct: 57 VLNGENLLLAIPTASGKTLVAEIVMLHKLFTGGGKAVYLVPLKALAEEKYREF 109
>gi|336122268|ref|YP_004577043.1| ski2-type helicase [Methanothermococcus okinawensis IH1]
gi|334856789|gb|AEH07265.1| ski2-type helicase [Methanothermococcus okinawensis IH1]
Length = 775
Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 64 LEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHE 118
+EG L +NKN ++ IPT+ GKTL+GE+ + L K+ +FI+P +L +E
Sbjct: 24 VEGGLLN--KNKNFLICIPTASGKTLIGEMAFINHLLDNNKTPTNKKGLFIVPLKALANE 81
Query: 119 KYQSLAKAAEEF 130
KY+ E++
Sbjct: 82 KYEEFKGKYEKY 93
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAKAA 57
+NKN ++ IPT+ GKTL+GE+ + L K+ +FI+P +L +EKY+
Sbjct: 31 KNKNFLICIPTASGKTLIGEMAFINHLLDNNKTPTNKKGLFIVPLKALANEKYEEFKGKY 90
Query: 58 EEF 60
E++
Sbjct: 91 EKY 93
>gi|435849690|ref|YP_007301631.1| superfamily II helicase [Methanomethylovorans hollandica DSM 15978]
gi|433663178|gb|AGB50603.1| superfamily II helicase [Methanomethylovorans hollandica DSM 15978]
Length = 769
Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 65 EGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ +C+E +++ KN +IPT+ GKT + E+ ++K + K K A++I+P +L EKY S
Sbjct: 28 QAECMEKGLLKGKNVFCAIPTASGKTFLAELAMLKAIS-KGKKAMYIVPLRALAKEKYTS 86
Query: 123 L 123
Sbjct: 87 F 87
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ KN +IPT+ GKT + E+ ++K + K K A++I+P +L EKY S
Sbjct: 36 LLKGKNVFCAIPTASGKTFLAELAMLKAIS-KGKKAMYIVPLRALAKEKYTSF 87
>gi|170290966|ref|YP_001737782.1| DEAD/DEAH box helicase [Candidatus Korarchaeum cryptofilum OPF8]
gi|170175046|gb|ACB08099.1| DEAD/DEAH box helicase domain protein [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 695
Score = 43.1 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+V N VL+ PT+ GKTL EI++ +EL+ K ++++P SL +EKY+ ++ +++
Sbjct: 27 LVSEGNFVLAAPTASGKTLAAEIVMNEELE-KGGKIVYLVPLRSLAYEKYEEFSRVFDKW 85
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ N VL+ PT+ GKTL EI++ +EL+ K ++++P SL +EKY+ ++ +++
Sbjct: 27 LVSEGNFVLAAPTASGKTLAAEIVMNEELE-KGGKIVYLVPLRSLAYEKYEEFSRVFDKW 85
Query: 131 KFYLEV 136
+ +
Sbjct: 86 SVRVSI 91
>gi|268572053|ref|XP_002641222.1| Hypothetical protein CBG09086 [Caenorhabditis briggsae]
Length = 370
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
N++ + S PTS GK++V E+L K + K +F+LPYIS+ EK + +
Sbjct: 44 NQHLIFSAPTSAGKSIVAELLAWK-VASTGKKVLFVLPYISVAREKLHQIQR 94
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
N++ + S PTS GK++V E+L K + K +F+LPYIS+ EK + +
Sbjct: 44 NQHLIFSAPTSAGKSIVAELLAWK-VASTGKKVLFVLPYISVAREKLHQIQR 94
>gi|389585464|dbj|GAB68195.1| RNA helicase [Plasmodium cynomolgi strain B]
Length = 1751
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++N +L PT GKT++GE+ I++ L +++ A++I P ++V+E+++S +FK
Sbjct: 1442 DENILLGAPTGSGKTVIGELCILRSLLHHEREKAVYICPMKAIVNERHKSW---KSKFKS 1498
Query: 63 YLEGKCLEMIQNKN 76
L +E+ +KN
Sbjct: 1499 LLNKNVIELTGDKN 1512
Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQS 122
++N +L PT GKT++GE+ I++ L +++ A++I P ++V+E+++S
Sbjct: 1442 DENILLGAPTGSGKTVIGELCILRSLLHHEREKAVYICPMKAIVNERHKS 1491
>gi|414177026|ref|ZP_11431255.1| hypothetical protein HMPREF9695_04901 [Afipia broomeae ATCC 49717]
gi|410887179|gb|EKS34991.1| hypothetical protein HMPREF9695_04901 [Afipia broomeae ATCC 49717]
Length = 1034
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
++ +N V+S PTS GKT+VGE+ ++ + + +K A+F+LP +LV +K
Sbjct: 301 VLDGENLVVSAPTSSGKTMVGELAALRNV-LDRKRALFLLPLKALVADK 348
Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ +N V+S PTS GKT+VGE+ ++ + + +K A+F+LP +LV +K
Sbjct: 301 VLDGENLVVSAPTSSGKTMVGELAALRNV-LDRKRALFLLPLKALVADK 348
>gi|316933468|ref|YP_004108450.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris DX-1]
gi|315601182|gb|ADU43717.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
DX-1]
Length = 1034
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
++ +N V+S PTS GKT+VGE+ ++ + + +K A+F+LP +LV +K
Sbjct: 301 VLDGENLVVSAPTSSGKTMVGELAALRNV-LDRKRALFLLPLKALVADK 348
Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ +N V+S PTS GKT+VGE+ ++ + + +K A+F+LP +LV +K
Sbjct: 301 VLDGENLVVSAPTSSGKTMVGELAALRNV-LDRKRALFLLPLKALVADK 348
>gi|156938074|ref|YP_001435870.1| DEAD/DEAH box helicase [Ignicoccus hospitalis KIN4/I]
gi|156567058|gb|ABU82463.1| DEAD/DEAH box helicase domain protein [Ignicoccus hospitalis
KIN4/I]
Length = 698
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+ + KN ++S PT GKTLV E+ I L K A+++ P SL EKY SL K ++
Sbjct: 37 LTEFKNLLVSAPTGSGKTLVAEMAIKNALDNGYK-AVYLTPLRSLAFEKYASLKKIFKDS 95
Query: 131 KFYLEV 136
K L V
Sbjct: 96 KVALSV 101
Score = 42.0 bits (97), Expect = 0.084, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + KN ++S PT GKTLV E+ I L K A+++ P SL EKY SL K ++
Sbjct: 37 LTEFKNLLVSAPTGSGKTLVAEMAIKNALDNGYK-AVYLTPLRSLAFEKYASLKKIFKDS 95
Query: 61 KFYL 64
K L
Sbjct: 96 KVAL 99
>gi|424819632|ref|ZP_18244705.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5_'5-way FS']
gi|326422508|gb|EGD71904.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5_'5-way FS']
Length = 705
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+ + +N ++S PT+ GKTL+ E+ I+ + K A+++ P +L+ EKY+ ++ E
Sbjct: 38 LFKGRNLLISAPTASGKTLIAEMAILNTISEGNK-AVYLAPLRALISEKYEDFSRDNPEV 96
Query: 131 KFYLEV 136
K L +
Sbjct: 97 KCLLSI 102
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N ++S PT+ GKTL+ E+ I+ + K A+++ P +L+ EKY+ ++ E
Sbjct: 38 LFKGRNLLISAPTASGKTLIAEMAILNTISEGNK-AVYLAPLRALISEKYEDFSRDNPEV 96
Query: 61 K 61
K
Sbjct: 97 K 97
>gi|290559175|gb|EFD92533.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 690
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+ + +N ++S PT+ GKTL+ E+ I+ + K A+++ P +L+ EKY+ ++ E
Sbjct: 38 LFKGRNLLISAPTASGKTLIAEMAILNTISEGNK-AVYLAPLRALISEKYEDFSRDNPEV 96
Query: 131 KFYLEV 136
K L +
Sbjct: 97 KCLLSI 102
Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N ++S PT+ GKTL+ E+ I+ + K A+++ P +L+ EKY+ ++ E
Sbjct: 38 LFKGRNLLISAPTASGKTLIAEMAILNTISEGNK-AVYLAPLRALISEKYEDFSRDNPEV 96
Query: 61 K 61
K
Sbjct: 97 K 97
>gi|403340318|gb|EJY69440.1| DNA polymerase Q [Oxytricha trifallax]
Length = 1127
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 69 LEMIQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEK 119
L I +N + S PTS GKTLV ++++MK L K I I+PY+SL+ EK
Sbjct: 392 LSQIFLENLIYSAPTSAGKTLVSDLIMMKNLIKYPTLKTIIIMPYVSLIGEK 443
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEK 49
+N + S PTS GKTLV ++++MK L K I I+PY+SL+ EK
Sbjct: 398 ENLIYSAPTSAGKTLVSDLIMMKNLIKYPTLKTIIIMPYVSLIGEK 443
>gi|307188640|gb|EFN73345.1| Superkiller viralicidic activity 2-like 2 [Camponotus floridanus]
Length = 961
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMK 97
Y+ L H++ K A+E+KF L+ E I N++ ++S TS GKT+V E I
Sbjct: 91 YVPLEHKQ----GKPAKEYKFILDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAC 146
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
LK KQ+ I+ P +L ++KY+ EEFK
Sbjct: 147 SLKDKQR-VIYTTPIKALSNQKYREF---HEEFK 176
Score = 35.4 bits (80), Expect = 8.3, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+V E I LK KQ+ I+ P +L ++KY+ EEFK
Sbjct: 123 NQSVLVSAHTSAGKTVVAEYAIACSLKDKQR-VIYTTPIKALSNQKYREF---HEEFK 176
>gi|395213541|ref|ZP_10400255.1| DEAD/DEAH box helicase-like protein [Pontibacter sp. BAB1700]
gi|394456706|gb|EJF10971.1| DEAD/DEAH box helicase-like protein [Pontibacter sp. BAB1700]
Length = 1134
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 45 LVHEKYQS-----LAKAAEEFKFY---LEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIM 96
L H+ Y S + K +F+F+ L +++ + N V+ +PTS GKT + EI I+
Sbjct: 254 LTHDLYTSSGIKEIDKRTSKFEFWISQLRAVQQQVLSDDNFVIQMPTSAGKTFIAEITIL 313
Query: 97 KEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
L K K I+I P+ +L +EK L+ + + + L
Sbjct: 314 NSLIKHPDKKCIYIAPFRALTNEKEIELSNYLSKLGYSISSL 355
Score = 39.3 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLA 54
++ + N V+ +PTS GKT + EI I+ L K K I+I P+ +L +EK L+
Sbjct: 288 VLSDDNFVIQMPTSAGKTFIAEITILNSLIKHPDKKCIYIAPFRALTNEKEIELS 342
>gi|332030475|gb|EGI70163.1| Superkiller viralicidic activity 2-like 2 [Acromyrmex echinatior]
Length = 945
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMK 97
Y+ L H++ K A+E+KF L+ E I N++ ++S TS GKT+V E I
Sbjct: 91 YVPLEHQQ----GKPAKEYKFILDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAC 146
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
LK KQ+ I+ P +L ++KY+ EEFK
Sbjct: 147 SLKDKQR-VIYTTPIKALSNQKYREF---YEEFK 176
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+V E I LK KQ+ I+ P +L ++KY+ EEFK
Sbjct: 122 NNQSVLVSAHTSAGKTVVAEYAIACSLKDKQR-VIYTTPIKALSNQKYREF---YEEFK 176
>gi|284039711|ref|YP_003389641.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283819004|gb|ADB40842.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 1004
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
++ ++ ++ PTS GKT +GE+ ++ Q+ A+F+LPY +L +EKY+
Sbjct: 298 LLDGQSLLVVAPTSSGKTFIGEMAAVRAATANQR-AVFLLPYKALTNEKYEDF 349
Score = 42.7 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ ++ ++ PTS GKT +GE+ ++ Q+ A+F+LPY +L +EKY+
Sbjct: 298 LLDGQSLLVVAPTSSGKTFIGEMAAVRAATANQR-AVFLLPYKALTNEKYEDF 349
>gi|307107102|gb|EFN55346.1| hypothetical protein CHLNCDRAFT_134358 [Chlorella variabilis]
Length = 2164
Score = 42.7 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL-------------KIKQKSAIFILPYISLVHEKYQS 52
N V PTSGGK+LV E+L+++ L K K A+ +LPY+S+V EK +
Sbjct: 283 NLVYCAPTSGGKSLVAEVLMVRRLLASVRHIPQPRRSKPKYGRALVVLPYVSIVCEKSEH 342
Query: 53 L 53
L
Sbjct: 343 L 343
Score = 42.7 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKEL-------------KIKQKSAIFILPYISLVHEKYQS 122
N V PTSGGK+LV E+L+++ L K K A+ +LPY+S+V EK +
Sbjct: 283 NLVYCAPTSGGKSLVAEVLMVRRLLASVRHIPQPRRSKPKYGRALVVLPYVSIVCEKSEH 342
Query: 123 L 123
L
Sbjct: 343 L 343
>gi|413916517|gb|AFW56449.1| hypothetical protein ZEAMMB73_871172 [Zea mays]
Length = 733
Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
++ +N V TS GK+ V E+L+++++ AI +LPY+S+ EK + L + E
Sbjct: 475 VLGKRNLVYCASTSAGKSFVAEVLMLRQILSTGNMAILVLPYVSICAEKAEHLEQLLE 532
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+N V TS GK+ V E+L+++++ AI +LPY+S+ EK + L + E
Sbjct: 479 RNLVYCASTSAGKSFVAEVLMLRQILSTGNMAILVLPYVSICAEKAEHLEQLLE 532
>gi|229051249|ref|ZP_04194775.1| DEAD/DEAH box helicase domain protein [Bacillus cereus AH676]
gi|228722099|gb|EEL73518.1| DEAD/DEAH box helicase domain protein [Bacillus cereus AH676]
Length = 1082
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 62 FYLEGKCL--EMIQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHE 118
F + +CL E+++N V+ +PTS GKT V E+ I+K L K I+I PY SL +E
Sbjct: 232 FKSQRECLDGELLKNDGFVIGMPTSSGKTKVAEVTILKTLTKSPDALCIYIAPYRSLANE 291
Query: 119 KYQSLAKAAE 128
SL+ E
Sbjct: 292 VEFSLSSMFE 301
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++N V+ +PTS GKT V E+ I+K L K I+I PY SL +E SL+ E
Sbjct: 243 LLKNDGFVIGMPTSSGKTKVAEVTILKTLTKSPDALCIYIAPYRSLANEVEFSLSSMFE 301
>gi|225156456|ref|ZP_03724792.1| DEAD/DEAH box helicase domain protein [Diplosphaera colitermitum
TAV2]
gi|224802964|gb|EEG21210.1| DEAD/DEAH box helicase domain protein [Diplosphaera colitermitum
TAV2]
Length = 909
Score = 42.4 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE+ KN +L+ PT GK+LV L K L ++S ++ P +LV+EK+ SL
Sbjct: 57 EEAILELFDGKNVILNTPTGSGKSLVAAALHFKSLCAGERS-VYTCPIKALVNEKFLSLC 115
Query: 125 K 125
+
Sbjct: 116 R 116
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN +L+ PT GK+LV L K L ++S ++ P +LV+EK+ SL +
Sbjct: 63 LFDGKNVILNTPTGSGKSLVAAALHFKSLCAGERS-VYTCPIKALVNEKFLSLCR 116
>gi|221058763|ref|XP_002260027.1| helicase [Plasmodium knowlesi strain H]
gi|193810100|emb|CAQ41294.1| helicase, putative [Plasmodium knowlesi strain H]
Length = 1042
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
KN + +IPT GKT++ +ILI++ + K AI LP ++L++EKY K
Sbjct: 274 KNFLFNIPTGMGKTIIYDILIIRMVLYKGYRAILCLPTMTLINEKYDYYEK 324
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
KN + +IPT GKT++ +ILI++ + K AI LP ++L++EKY K
Sbjct: 274 KNFLFNIPTGMGKTIIYDILIIRMVLYKGYRAILCLPTMTLINEKYDYYEK 324
>gi|116754111|ref|YP_843229.1| ski2-like helicase [Methanosaeta thermophila PT]
gi|116665562|gb|ABK14589.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
Length = 693
Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ +N ++S+PT+ GKTL+ E+ +++ + K +++I+P +L EK++S ++
Sbjct: 39 LLDGRNMIISVPTAAGKTLLAELAMLRG-ALSGKRSLYIVPLRALASEKFESFSR 92
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ +N ++S+PT+ GKTL+ E+ +++ + K +++I+P +L EK++S ++
Sbjct: 39 LLDGRNMIISVPTAAGKTLLAELAMLRG-ALSGKRSLYIVPLRALASEKFESFSR 92
>gi|157120596|ref|XP_001659679.1| helicase [Aedes aegypti]
gi|108874885|gb|EAT39110.1| AAEL009067-PA [Aedes aegypti]
Length = 1035
Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
KAA+E+ F L + + + I+N+ VL S TS GKT+V E I K L KQ+ I+
Sbjct: 121 GKAAKEYPFVLDPFQKEAILCIENQQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYT 179
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ EEFK
Sbjct: 180 TPIKALSNQKYREF---HEEFK 198
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 2 VQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++N+ VL S TS GKT+V E I K L KQ+ I+ P +L ++KY+ EEF
Sbjct: 142 IENQQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYTTPIKALSNQKYREF---HEEF 197
Query: 61 K 61
K
Sbjct: 198 K 198
>gi|332159494|ref|YP_004424773.1| ski2-like helicase [Pyrococcus sp. NA2]
gi|331034957|gb|AEC52769.1| ski2-like helicase [Pyrococcus sp. NA2]
Length = 715
Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++ N +++IPT+ GKTL+ EI I L + A++++P +L EKY+ EF
Sbjct: 36 ILKGDNALIAIPTASGKTLIAEITITNRLLNEGGKAVYLVPLKALAEEKYK-------EF 88
Query: 131 KFYLEV 136
K + E+
Sbjct: 89 KDWEEI 94
Score = 41.6 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ N +++IPT+ GKTL+ EI I L + A++++P +L EKY+ E
Sbjct: 36 ILKGDNALIAIPTASGKTLIAEITITNRLLNEGGKAVYLVPLKALAEEKYKEFKDWEE 93
>gi|294886779|ref|XP_002771849.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
gi|239875649|gb|EER03665.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
Length = 1188
Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
V PTSGGK+LV E+++++ L + ++ LPY+S+ EK Q L +
Sbjct: 340 VYCAPTSGGKSLVAELIMLRRLLFRGLRGVYTLPYVSICQEKLQQLRR 387
Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
V PTSGGK+LV E+++++ L + ++ LPY+S+ EK Q L +
Sbjct: 340 VYCAPTSGGKSLVAELIMLRRLLFRGLRGVYTLPYVSICQEKLQQLRR 387
>gi|26346947|dbj|BAC37122.1| unnamed protein product [Mus musculus]
Length = 616
Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|48478452|ref|YP_024158.1| ski2-like helicase [Picrophilus torridus DSM 9790]
gi|48431100|gb|AAT43965.1| helicase involved in UV-protection [Picrophilus torridus DSM
9790]
Length = 674
Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
N+N ++S+PT+ GK+L+G I K + K +++I+P SL EKY+ L
Sbjct: 35 NENVIVSVPTASGKSLIGYYAIYKAF-LAGKKSMYIVPLRSLAMEKYEEL 83
Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
N+N ++S+PT+ GK+L+G I K + K +++I+P SL EKY+ L
Sbjct: 35 NENVIVSVPTASGKSLIGYYAIYKAF-LAGKKSMYIVPLRSLAMEKYEEL 83
>gi|327401713|ref|YP_004342552.1| ski2-type helicase [Archaeoglobus veneficus SNP6]
gi|327317221|gb|AEA47837.1| ski2-type helicase [Archaeoglobus veneficus SNP6]
Length = 699
Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ KN V++IPT+ GKTL+ E+ +++E+ I+ ++++P +L EKY+ K
Sbjct: 38 LFTRKNMVIAIPTASGKTLLAELAMVREI-IEGGKCLYVVPLRALAMEKYEEFRK 91
Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN V++IPT+ GKTL+ E+ +++E+ I+ ++++P +L EKY+ K
Sbjct: 38 LFTRKNMVIAIPTASGKTLLAELAMVREI-IEGGKCLYVVPLRALAMEKYEEFRK 91
>gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1683
Score = 42.4 bits (98), Expect = 0.070, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 67 KCLEM---IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+CL++ + ++ V TS GK+LV E+L+++ + K A+ +LPY++L EK L
Sbjct: 73 ECLQVDGVLDGRSLVYCASTSAGKSLVAEVLMLRRILSTGKKALLVLPYVALCSEKADHL 132
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ ++ V TS GK+LV E+L+++ + K A+ +LPY++L EK L
Sbjct: 80 VLDGRSLVYCASTSAGKSLVAEVLMLRRILSTGKKALLVLPYVALCSEKADHL 132
>gi|307354952|ref|YP_003896003.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307158185|gb|ADN37565.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 747
Score = 42.0 bits (97), Expect = 0.072, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 65 EGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ C+E +++ KN ++SIPT+ GKTLV E+ + + + + K ++++P +L EK++
Sbjct: 28 QADCVEKGLLEGKNLLISIPTASGKTLVAEMAMHRHVANRGK-CLYVVPLKALASEKFEE 86
Query: 123 LA 124
+
Sbjct: 87 FS 88
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+++ KN ++SIPT+ GKTLV E+ + + + + K ++++P +L EK++ +
Sbjct: 36 LLEGKNLLISIPTASGKTLVAEMAMHRHVANRGK-CLYVVPLKALASEKFEEFS 88
>gi|115673398|ref|XP_789631.2| PREDICTED: superkiller viralicidic activity 2-like 2
[Strongylocentrotus purpuratus]
Length = 1024
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 46 VHEKYQSLA----KAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILI 95
+ E+Y+ L KAA+++ F L+ KCLE N++ ++S TS GKT+ E I
Sbjct: 99 IEEEYKPLEPTTKKAAKDYPFILDPFQKEAIKCLE--NNQSVLVSAHTSAGKTVCAEYAI 156
Query: 96 MKELKIKQKSAIFILPYISLVHEKYQSL 123
L+ KQ+ I+ P +L ++KY+ L
Sbjct: 157 AMSLRDKQR-VIYTTPIKALSNQKYREL 183
>gi|333911571|ref|YP_004485304.1| ski2-type helicase [Methanotorris igneus Kol 5]
gi|333752160|gb|AEF97239.1| ski2-type helicase [Methanotorris igneus Kol 5]
Length = 699
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAKAAEE 59
KN ++ IPT+ GKTL+GE+ ++ L + K+ +FI+P +L EKY+ + E+
Sbjct: 36 KNFLICIPTASGKTLIGEMALINHLLDENKTPTNKKGLFIVPLKALASEKYEEFKRKYEK 95
Query: 60 F 60
+
Sbjct: 96 Y 96
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAKAAEE 129
KN ++ IPT+ GKTL+GE+ ++ L + K+ +FI+P +L EKY+ + E+
Sbjct: 36 KNFLICIPTASGKTLIGEMALINHLLDENKTPTNKKGLFIVPLKALASEKYEEFKRKYEK 95
Query: 130 F 130
+
Sbjct: 96 Y 96
>gi|390335872|ref|XP_001197942.2| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Strongylocentrotus purpuratus]
Length = 1024
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 46 VHEKYQSLA----KAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILI 95
+ E+Y+ L KAA+++ F L+ KCLE N++ ++S TS GKT+ E I
Sbjct: 99 IEEEYKPLEPTTKKAAKDYPFILDPFQKEAIKCLE--NNQSVLVSAHTSAGKTVCAEYAI 156
Query: 96 MKELKIKQKSAIFILPYISLVHEKYQSL 123
L+ KQ+ I+ P +L ++KY+ L
Sbjct: 157 AMSLRDKQR-VIYTTPIKALSNQKYREL 183
>gi|124809317|ref|XP_001348544.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
gi|23497440|gb|AAN36983.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
Length = 2472
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++N +L PT GKT++GE+ I++ L+ + + +++I P ++V+E+Y+S +FK
Sbjct: 1386 DENILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYICPMKAIVNERYKSW---KSKFKS 1442
Query: 63 YLEGKCLEMIQNKN 76
+E+ +KN
Sbjct: 1443 LFNKNVIELTGDKN 1456
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
++N +L PT GKT++GE+ I++ L+ + + +++I P ++V+E+Y+S
Sbjct: 1386 DENILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYICPMKAIVNERYKSW 1436
>gi|433644283|ref|YP_007276852.1| superfamily II helicase [Mycobacterium smegmatis JS623]
gi|433301003|gb|AGB26822.1| superfamily II helicase [Mycobacterium smegmatis JS623]
Length = 1169
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+ VLS+PTSGGKTLV ++L ++ L +S ++ P SL E +S++
Sbjct: 300 RRMVLSVPTSGGKTLVAQMLAVEHLARTNRSVCYVAPTRSLGREVRRSMS 349
Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+ VLS+PTSGGKTLV ++L ++ L +S ++ P SL E +S++
Sbjct: 300 RRMVLSVPTSGGKTLVAQMLAVEHLARTNRSVCYVAPTRSLGREVRRSMS 349
>gi|91773088|ref|YP_565780.1| ski2-like helicase [Methanococcoides burtonii DSM 6242]
gi|121689265|sp|Q12WZ6.1|HELS_METBU RecName: Full=Putative ski2-type helicase
gi|91712103|gb|ABE52030.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
Length = 760
Score = 42.0 bits (97), Expect = 0.082, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 65 EGKCLEM--IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ + +EM ++ KN + +IPT+ GKTL+ E+ ++K ++ K A++I+P +L EK++
Sbjct: 28 QAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGGK-ALYIVPLRALASEKFER 86
Query: 123 LAKAA 127
+ A
Sbjct: 87 FKELA 91
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57
+++ KN + +IPT+ GKTL+ E+ ++K ++ K A++I+P +L EK++ + A
Sbjct: 36 LLEKKNLLAAIPTASGKTLLAELAMIKAIREGGK-ALYIVPLRALASEKFERFKELA 91
>gi|302855051|ref|XP_002959026.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
nagariensis]
gi|300255592|gb|EFJ39887.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
nagariensis]
Length = 2736
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 15 GGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKC-LEMIQ 73
G LV E +Q A P L Y+ E +++ E C L ++
Sbjct: 806 GTAELVDEPPPPPPAPPRQLEAYLPAP---LCQAYYERGGGRFELYEWQAECLCQLGVLM 862
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISLVHEKYQSLA 124
+N V PTSGGK++V E+L ++ L + K + +LP+++L EK ++L
Sbjct: 863 GRNLVYCAPTSGGKSMVAEMLGLRRLLTTAAPPRGKPFLLVLPFVALCAEKAEALG 918
Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISLVHEKYQSLA 54
++ +N V PTSGGK++V E+L ++ L + K + +LP+++L EK ++L
Sbjct: 860 VLMGRNLVYCAPTSGGKSMVAEMLGLRRLLTTAAPPRGKPFLLVLPFVALCAEKAEALG 918
>gi|305663977|ref|YP_003860265.1| DEAD/DEAH box helicase [Ignisphaera aggregans DSM 17230]
gi|304378546|gb|ADM28385.1| DEAD/DEAH box helicase domain protein [Ignisphaera aggregans DSM
17230]
Length = 734
Score = 42.0 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 8/63 (12%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ + + ++S PT+ GKTL+GE+ ++ + ++ K I+ P +LV+EKYQ EF
Sbjct: 47 VLDDISVIVSAPTASGKTLIGELALINAV-LRGKKGIYTSPLKALVYEKYQ-------EF 98
Query: 131 KFY 133
+F+
Sbjct: 99 RFW 101
Score = 41.6 bits (96), Expect = 0.093, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 8/56 (14%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63
++S PT+ GKTL+GE+ ++ + ++ K I+ P +LV+EKYQ EF+F+
Sbjct: 54 IVSAPTASGKTLIGELALINAV-LRGKKGIYTSPLKALVYEKYQ-------EFRFW 101
>gi|158298455|ref|XP_318627.4| AGAP009600-PA [Anopheles gambiae str. PEST]
gi|157013889|gb|EAA14456.4| AGAP009600-PA [Anopheles gambiae str. PEST]
Length = 1036
Score = 42.0 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 48 EKYQSLA----KAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKEL 99
+KY LA K A+E+ F L+ E I N++ ++S TS GKT+V E I K L
Sbjct: 112 QKYMPLAPATGKPAKEYAFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAKSL 171
Query: 100 KIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
KQ+ I+ P +L ++KY+ EEFK
Sbjct: 172 ADKQR-VIYTTPIKALSNQKYREF---HEEFK 199
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+V E I K L KQ+ I+ P +L ++KY+ EEFK
Sbjct: 146 NQSVLVSAHTSAGKTVVAEYAIAKSLADKQR-VIYTTPIKALSNQKYREF---HEEFK 199
>gi|294495240|ref|YP_003541733.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
gi|292666239|gb|ADE36088.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
5219]
Length = 729
Score = 42.0 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++Q +N + +IPT+ GKTL+ E+ ++K +K K A++I+P +L EK++ +
Sbjct: 36 LLQGENLLAAIPTASGKTLLAEMAMLKAIK-KGGKALYIVPLRALASEKFRDFKR 89
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++Q +N + +IPT+ GKTL+ E+ ++K +K K A++I+P +L EK++ +
Sbjct: 36 LLQGENLLAAIPTASGKTLLAEMAMLKAIK-KGGKALYIVPLRALASEKFRDFKR 89
>gi|159905773|ref|YP_001549435.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C6]
gi|159887266|gb|ABX02203.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C6]
Length = 811
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
>gi|345321203|ref|XP_003430394.1| PREDICTED: superkiller viralicidic activity 2-like 2-like, partial
[Ornithorhynchus anatinus]
Length = 305
Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 99 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 157
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 158 TSPIKALSNQKYREM---YEEFQ 177
>gi|355571756|ref|ZP_09042984.1| ski2-type helicase [Methanolinea tarda NOBI-1]
gi|354825389|gb|EHF09619.1| ski2-type helicase [Methanolinea tarda NOBI-1]
Length = 725
Score = 41.6 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 65 EGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ +C+ + + KN +L++PT+ GKTLV E+ + + + ++I+P +L EKY+
Sbjct: 28 QAECVNKGLFEGKNILLAVPTASGKTLVAEMAMHHHIS-RGGKCLYIVPLKALASEKYED 86
Query: 123 LAK 125
A+
Sbjct: 87 FAR 89
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ + KN +L++PT+ GKTLV E+ + + + ++I+P +L EKY+ A+
Sbjct: 36 LFEGKNILLAVPTASGKTLVAEMAMHHHIS-RGGKCLYIVPLKALASEKYEDFAR 89
>gi|288932505|ref|YP_003436565.1| DEAD/DEAH box helicase [Ferroglobus placidus DSM 10642]
gi|288894753|gb|ADC66290.1| DEAD/DEAH box helicase domain protein [Ferroglobus placidus DSM
10642]
Length = 688
Score = 41.6 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+ NKN V++IPT+ GKTL+ E+ ++ E+ I+ ++ +P +L EK++ +K E
Sbjct: 39 LFSNKNLVVAIPTASGKTLIAELAMIYEV-IRGGKCLYTVPLRALAGEKFEEFSKWEE 95
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ NKN V++IPT+ GKTL+ E+ ++ E+ I+ ++ +P +L EK++ +K E
Sbjct: 39 LFSNKNLVVAIPTASGKTLIAELAMIYEV-IRGGKCLYTVPLRALAGEKFEEFSKWEE 95
>gi|134045354|ref|YP_001096840.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C5]
gi|132662979|gb|ABO34625.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C5]
Length = 811
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
>gi|150402454|ref|YP_001329748.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C7]
gi|150033484|gb|ABR65597.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C7]
Length = 811
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
>gi|229125079|ref|ZP_04254240.1| DEAD/DEAH box helicase domain protein [Bacillus cereus 95/8201]
gi|228658386|gb|EEL14065.1| DEAD/DEAH box helicase domain protein [Bacillus cereus 95/8201]
Length = 1082
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 62 FYLEGKCL--EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA--IFILPYISLVH 117
F + +CL E+++N V+ +PTS GKT V E+ I+K L K A I+I PY SL +
Sbjct: 232 FKSQRECLDGELLKNDGFVIGMPTSSGKTKVAEVTILKTL-TKSPGALCIYIAPYRSLAN 290
Query: 118 EKYQSLAKAAE 128
E SL+ E
Sbjct: 291 EVEFSLSSMFE 301
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA--IFILPYISLVHEKYQSLAKAAE 58
+++N V+ +PTS GKT V E+ I+K L K A I+I PY SL +E SL+ E
Sbjct: 243 LLKNDGFVIGMPTSSGKTKVAEVTILKTL-TKSPGALCIYIAPYRSLANEVEFSLSSMFE 301
>gi|340624599|ref|YP_004743052.1| DEAD/DEAH box helicase [Methanococcus maripaludis X1]
gi|339904867|gb|AEK20309.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis X1]
Length = 811
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
>gi|255071395|ref|XP_002507779.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
gi|226523054|gb|ACO69037.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
Length = 1974
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISLVHEKYQSLAK 55
M +N V PTSGGK+LV ++L+++ L A+ +LP++SL E+ L +
Sbjct: 232 MAHTRNLVYCAPTSGGKSLVSDLLVVRRLIAGGCDGGAAMALMVLPFVSLCQERSTELTR 291
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 65 EGKCLEM----IQNKNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISL 115
+ +CL M +N V PTSGGK+LV ++L+++ L A+ +LP++SL
Sbjct: 222 QAECLAMPGVMAHTRNLVYCAPTSGGKSLVSDLLVVRRLIAGGCDGGAAMALMVLPFVSL 281
Query: 116 VHEKYQSLAK 125
E+ L +
Sbjct: 282 CQERSTELTR 291
>gi|45358847|ref|NP_988404.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis S2]
gi|45047713|emb|CAF30840.1| DEAD/DEAH box helicase:Helicase, C-terminal [Methanococcus
maripaludis S2]
Length = 811
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+++N N +++ TS GKTL+GE+ +K + K+ +F++P ++L ++KY
Sbjct: 217 LLKNDNLLITSATSSGKTLIGELAGIKNISEKKGKFLFLVPLVALANQKY 266
>gi|392392169|ref|YP_006428771.1| superfamily II helicase [Desulfitobacterium dehalogenans ATCC
51507]
gi|390523247|gb|AFL98977.1| superfamily II helicase [Desulfitobacterium dehalogenans ATCC
51507]
Length = 1130
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 48
+N ++S+PTS GKT++ E+ I K L AI+++P ++L HE
Sbjct: 289 KNNISIISMPTSAGKTMIAELSIFKSLIKNAGIAIYVVPSLALTHE 334
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+N ++S+PTS GKT++ E+ I K L AI+++P ++L HE
Sbjct: 289 KNNISIISMPTSAGKTMIAELSIFKSLIKNAGIAIYVVPSLALTHE 334
>gi|268324987|emb|CBH38575.1| putative ski2-type helicase [uncultured archaeon]
Length = 672
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
N V+S PT+ GKTL+ E++++K + ++++P +L +EKYQ+
Sbjct: 39 NFVISSPTASGKTLLAELVMLKSILQDSGKCLYVVPLNALAYEKYQNF 86
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
N V+S PT+ GKTL+ E++++K + ++++P +L +EKYQ+
Sbjct: 39 NFVISSPTASGKTLLAELVMLKSILQDSGKCLYVVPLNALAYEKYQNF 86
>gi|296121500|ref|YP_003629278.1| DEAD/DEAH box helicase [Planctomyces limnophilus DSM 3776]
gi|296013840|gb|ADG67079.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus
DSM 3776]
Length = 845
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++S PT GKTL+ E I + LK QK+ + P I+L +K+ + AAE + F
Sbjct: 43 LISAPTGTGKTLIAEGAIFEALK-NQKTIYYTTPLIALTDQKFSEIQDAAERWGF 96
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
++S PT GKTL+ E I + LK QK+ + P I+L +K+ + AAE + F
Sbjct: 43 LISAPTGTGKTLIAEGAIFEALK-NQKTIYYTTPLIALTDQKFSEIQDAAERWGF 96
>gi|26346837|dbj|BAC37067.1| unnamed protein product [Mus musculus]
Length = 242
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|296005450|ref|XP_002809047.1| DEAD box helicase, putative [Plasmodium falciparum 3D7]
gi|225631989|emb|CAX64328.1| DEAD box helicase, putative [Plasmodium falciparum 3D7]
Length = 1244
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ IPT GKTL+ +ILI++++ K I LP +SL++EKY+ K
Sbjct: 319 LFKIPTGMGKTLIYDILIIRQVLYKGFRVILTLPTLSLINEKYEYYDK 366
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ IPT GKTL+ +ILI++++ K I LP +SL++EKY+ K
Sbjct: 319 LFKIPTGMGKTLIYDILIIRQVLYKGFRVILTLPTLSLINEKYEYYDK 366
>gi|351714361|gb|EHB17280.1| Superkiller viralicidic activity 2-like 2 [Heterocephalus glaber]
Length = 1040
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 IGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|403340622|gb|EJY69602.1| Superfamily II RNA helicase [Oxytricha trifallax]
Length = 1110
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
Query: 50 YQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
Y+ AK A+E+KF L+ +C+E +N++ +++ TS GKT V E I L KQ
Sbjct: 166 YKRPAKRAKEYKFTLDKFQERAVECIE--RNESVLVAAHTSAGKTAVAEYAIALALNSKQ 223
Query: 104 KSAIFILPYISLVHEKYQSLAKAAEEF 130
+ I+ P +L ++KY+ L EEF
Sbjct: 224 R-VIYTSPIKALSNQKYREL---QEEF 246
>gi|323345242|ref|ZP_08085465.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
gi|323093356|gb|EFZ35934.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
Length = 615
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK---A 126
E+IQ ++C + +PT GGK++ +I + Q +A+ + P ISL+H++ Q+L A
Sbjct: 26 EIIQGQDCFVLMPTGGGKSICYQIPALA----MQGTAVVVSPLISLMHDQVQALKTNGIA 81
Query: 127 AEEF 130
AEE
Sbjct: 82 AEEL 85
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK---AA 57
++Q ++C + +PT GGK++ +I + Q +A+ + P ISL+H++ Q+L AA
Sbjct: 27 IIQGQDCFVLMPTGGGKSICYQIPALA----MQGTAVVVSPLISLMHDQVQALKTNGIAA 82
Query: 58 EEFKFYLEGKCLEMIQNK 75
EE + MI+ K
Sbjct: 83 EELNSVNDANQDTMIRRK 100
>gi|73670944|ref|YP_306959.1| ski2-like helicase [Methanosarcina barkeri str. Fusaro]
gi|121723325|sp|Q465R3.1|HELS_METBF RecName: Full=Putative ski2-type helicase
gi|72398106|gb|AAZ72379.1| helicase [Methanosarcina barkeri str. Fusaro]
Length = 729
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEM------------IQNKNCVLSIPTSGGKTLVGEILIM 96
K +SL E +FYL +E+ ++ +N + +IPT+ GKTL+ E+ ++
Sbjct: 2 KIESLDLPDEVKQFYLNSGIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAML 61
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
K + K A++I+P +L EK++ + +E
Sbjct: 62 KSILAGGK-ALYIVPLRALASEKFRRFREFSE 92
Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ +N + +IPT+ GKTL+ E+ ++K + K A++I+P +L EK++ + +E
Sbjct: 36 LLEGRNLLAAIPTASGKTLLAELAMLKSILAGGK-ALYIVPLRALASEKFRRFREFSE 92
>gi|348569044|ref|XP_003470308.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cavia
porcellus]
Length = 1042
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 IGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|344240841|gb|EGV96944.1| Superkiller viralicidic activity 2-like 2 [Cricetulus griseus]
Length = 851
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 128 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 186
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 187 TSPIKALSNQKYREM---YEEFQ 206
>gi|86170414|ref|XP_966011.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
gi|46362253|emb|CAG25191.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
Length = 1350
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 44 SLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMK 97
S VH + + A +KF L+ +CLE +N++ ++S TS GKT++ E I
Sbjct: 235 SYVHNEIKEPLIPARTYKFELDTFQKKSIECLE--RNESVLVSAHTSAGKTVIAEYAIAL 292
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
L+ KQ+ I+ P +L ++KY+ L EEFK
Sbjct: 293 GLRDKQR-VIYTSPIKALSNQKYRDL---GEEFK 322
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+N++ ++S TS GKT++ E I L+ KQ+ I+ P +L ++KY+ L EEFK
Sbjct: 268 RNESVLVSAHTSAGKTVIAEYAIALGLRDKQR-VIYTSPIKALSNQKYRDL---GEEFK 322
>gi|84488930|ref|YP_447162.1| helicase [Methanosphaera stadtmanae DSM 3091]
gi|84372249|gb|ABC56519.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
Length = 694
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
N N ++SIPT+ GKT++G + +K L + ++ +P +SL +EKY+ K EEF F
Sbjct: 37 NNDNYIISIPTASGKTVLGVLAALKVL-LHGGKVVYSVPLLSLQNEKYKEF-KVFEEFGF 94
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
N N ++SIPT+ GKT++G + +K L + ++ +P +SL +EKY+ K EEF F
Sbjct: 37 NNDNYIISIPTASGKTVLGVLAALKVL-LHGGKVVYSVPLLSLQNEKYKEF-KVFEEFGF 94
>gi|395818820|ref|XP_003782813.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 3
[Otolemur garnettii]
Length = 1031
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 118 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 176
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 177 TSPIKALSNQKYREM---YEEFQ 196
>gi|34364907|emb|CAE45877.1| hypothetical protein [Homo sapiens]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|344272294|ref|XP_003407969.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Loxodonta
africana]
Length = 994
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 128 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 186
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 187 TSPIKALSNQKYREM---YEEFQ 206
>gi|344233814|gb|EGV65684.1| antiviral helicase [Candida tenuis ATCC 10573]
Length = 1063
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 12/90 (13%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEI 93
PY+ + K Q+ A+ + F L+ C++ +N++ ++S TS GKT+V E
Sbjct: 121 FPYVPISEHKRQNDAR---RYPFKLDPFQDTSISCID--RNESVLVSAHTSAGKTVVAEY 175
Query: 94 LIMKELKIKQKSAIFILPYISLVHEKYQSL 123
I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 176 AIAQSLRDKQR-VIYTSPIKALSNQKYREL 204
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+N++ ++S TS GKT+V E I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 155 RNESVLVSAHTSAGKTVVAEYAIAQSLRDKQR-VIYTSPIKALSNQKYREL 204
>gi|395818816|ref|XP_003782811.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1
[Otolemur garnettii]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|291395365|ref|XP_002714082.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Oryctolagus
cuniculus]
Length = 1040
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|158256730|dbj|BAF84338.1| unnamed protein product [Homo sapiens]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQYVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|354482595|ref|XP_003503483.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Cricetulus
griseus]
Length = 1041
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 128 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 186
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 187 TSPIKALSNQKYREM---YEEFQ 206
>gi|61363854|gb|AAX42455.1| KIAA0052 protein [synthetic construct]
gi|114325466|gb|AAH28604.3| Superkiller viralicidic activity 2-like 2 (S. cerevisiae) [Homo
sapiens]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|77539760|ref|NP_001029265.1| superkiller viralicidic activity 2-like 2 [Rattus norvegicus]
gi|149059353|gb|EDM10360.1| similar to RIKEN cDNA 2610528A15 [Rattus norvegicus]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|395735808|ref|XP_002815609.2| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1
[Pongo abelii]
Length = 1049
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|73949523|ref|XP_849676.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1
[Canis lupus familiaris]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|410948589|ref|XP_003981013.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity
2-like 2 [Felis catus]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|60654395|gb|AAX29888.1| KIAA0052 protein [synthetic construct]
Length = 1043
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|193211480|ref|NP_056175.3| superkiller viralicidic activity 2-like 2 [Homo sapiens]
gi|71153172|sp|P42285.3|SK2L2_HUMAN RecName: Full=Superkiller viralicidic activity 2-like 2; AltName:
Full=ATP-dependent helicase SKIV2L2
gi|85397868|gb|AAI04997.1| Superkiller viralicidic activity 2-like 2 (S. cerevisiae) [Homo
sapiens]
gi|109731061|gb|AAI13510.1| Superkiller viralicidic activity 2-like 2 (S. cerevisiae) [Homo
sapiens]
gi|119575314|gb|EAW54919.1| superkiller viralicidic activity 2-like 2 (S. cerevisiae) [Homo
sapiens]
gi|261858608|dbj|BAI45826.1| superkiller viralicidic activity 2-like 2 [synthetic construct]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|355719541|gb|AES06635.1| superkiller viralicidic activity 2-like 2 [Mustela putorius furo]
Length = 1033
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|395818818|ref|XP_003782812.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2
[Otolemur garnettii]
Length = 941
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 28 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 86
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 87 TSPIKALSNQKYREM---YEEFQ 106
>gi|297294287|ref|XP_002808474.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity
2-like 2-like [Macaca mulatta]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|296475815|tpg|DAA17930.1| TPA: superkiller viralicidic activity 2-like 2 [Bos taurus]
Length = 935
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|26353436|dbj|BAC40348.1| unnamed protein product [Mus musculus]
Length = 993
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 80 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 138
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 139 TSPIKALSNQKYREM---YEEFQ 158
>gi|21312352|ref|NP_082427.1| superkiller viralicidic activity 2-like 2 [Mus musculus]
gi|71153763|sp|Q9CZU3.1|SK2L2_MOUSE RecName: Full=Superkiller viralicidic activity 2-like 2; AltName:
Full=ATP-dependent helicase SKIV2L2
gi|12848729|dbj|BAB28066.1| unnamed protein product [Mus musculus]
gi|20809985|gb|AAH29230.1| Superkiller viralicidic activity 2-like 2 (S. cerevisiae) [Mus
musculus]
gi|148686457|gb|EDL18404.1| superkiller viralicidic activity 2-like 2 (S. cerevisiae) [Mus
musculus]
Length = 1040
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|402871560|ref|XP_003899727.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2
[Papio anubis]
Length = 941
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 28 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 86
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 87 TSPIKALSNQKYREM---YEEFQ 106
>gi|301785411|ref|XP_002928119.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Ailuropoda melanoleuca]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|114600242|ref|XP_001145794.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2 [Pan
troglodytes]
gi|397514271|ref|XP_003827415.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1 [Pan
paniscus]
gi|410226106|gb|JAA10272.1| superkiller viralicidic activity 2-like 2 [Pan troglodytes]
gi|410226108|gb|JAA10273.1| superkiller viralicidic activity 2-like 2 [Pan troglodytes]
gi|410226110|gb|JAA10274.1| superkiller viralicidic activity 2-like 2 [Pan troglodytes]
gi|410258606|gb|JAA17270.1| superkiller viralicidic activity 2-like 2 [Pan troglodytes]
gi|410258608|gb|JAA17271.1| superkiller viralicidic activity 2-like 2 [Pan troglodytes]
gi|410258610|gb|JAA17272.1| superkiller viralicidic activity 2-like 2 [Pan troglodytes]
gi|410352681|gb|JAA42944.1| superkiller viralicidic activity 2-like 2 [Pan troglodytes]
gi|410352683|gb|JAA42945.1| superkiller viralicidic activity 2-like 2 [Pan troglodytes]
gi|410352685|gb|JAA42946.1| superkiller viralicidic activity 2-like 2 [Pan troglodytes]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|432105562|gb|ELK31759.1| Superkiller viralicidic activity 2-like 2 [Myotis davidii]
Length = 1040
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|403267572|ref|XP_003925897.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1
[Saimiri boliviensis boliviensis]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|350594292|ref|XP_003134012.3| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1 [Sus
scrofa]
Length = 1042
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|426246501|ref|XP_004017032.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Ovis aries]
Length = 1042
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|40850929|gb|AAH65258.1| SKIV2L2 protein, partial [Homo sapiens]
Length = 1043
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 130 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 188
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 189 TSPIKALSNQKYREM---YEEFQ 208
>gi|355749922|gb|EHH54260.1| Superkiller viralicidic activity 2-like 2 [Macaca fascicularis]
gi|380788393|gb|AFE66072.1| superkiller viralicidic activity 2-like 2 [Macaca mulatta]
gi|380788395|gb|AFE66073.1| superkiller viralicidic activity 2-like 2 [Macaca mulatta]
gi|380788405|gb|AFE66078.1| superkiller viralicidic activity 2-like 2 [Macaca mulatta]
gi|383409597|gb|AFH28012.1| superkiller viralicidic activity 2-like 2 [Macaca mulatta]
gi|384940404|gb|AFI33807.1| superkiller viralicidic activity 2-like 2 [Macaca mulatta]
gi|384946132|gb|AFI36671.1| superkiller viralicidic activity 2-like 2 [Macaca mulatta]
Length = 1042
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|332821355|ref|XP_001145481.2| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1 [Pan
troglodytes]
gi|397514273|ref|XP_003827416.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2 [Pan
paniscus]
Length = 941
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 28 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 86
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 87 TSPIKALSNQKYREM---YEEFQ 106
>gi|440912988|gb|ELR62502.1| Superkiller viralicidic activity 2-like 2, partial [Bos grunniens
mutus]
Length = 1041
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 128 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 186
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 187 TSPIKALSNQKYREM---YEEFQ 206
>gi|417515647|gb|JAA53640.1| superkiller viralicidic activity 2-like 2 [Sus scrofa]
Length = 1042
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|402871558|ref|XP_003899726.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1
[Papio anubis]
Length = 1042
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|332233909|ref|XP_003266147.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Nomascus
leucogenys]
Length = 1036
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|296194581|ref|XP_002745007.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Callithrix
jacchus]
Length = 1042
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|194223879|ref|XP_001916412.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity
2-like 2-like [Equus caballus]
Length = 1047
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|6633995|dbj|BAA06124.2| KIAA0052 protein [Homo sapiens]
Length = 1046
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 133 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 191
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 192 TSPIKALSNQKYREM---YEEFQ 211
>gi|281337521|gb|EFB13105.1| hypothetical protein PANDA_018033 [Ailuropoda melanoleuca]
Length = 1026
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
>gi|149643077|ref|NP_001092482.1| superkiller viralicidic activity 2-like 2 [Bos taurus]
gi|148744957|gb|AAI42300.1| SKIV2L2 protein [Bos taurus]
Length = 1040
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|403267574|ref|XP_003925898.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 941
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 28 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 86
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 87 TSPIKALSNQKYREM---YEEFQ 106
>gi|350594294|ref|XP_003483871.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2 [Sus
scrofa]
Length = 941
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 28 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 86
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 87 TSPIKALSNQKYREM---YEEFQ 106
>gi|148878031|gb|AAI46078.1| SKIV2L2 protein [Bos taurus]
Length = 1040
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|297526610|ref|YP_003668634.1| DEAD/DEAH box helicase domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297255526|gb|ADI31735.1| DEAD/DEAH box helicase domain protein [Staphylothermus hellenicus
DSM 12710]
Length = 722
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+ NKN ++S PT+ GKTL+GE+ ++ K ++++P +L EKY
Sbjct: 46 LFNNKNLLVSAPTASGKTLIGEMALVHNTINKDMIGLYLVPLRALASEKY 95
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+ NKN ++S PT+ GKTL+GE+ ++ K ++++P +L EKY
Sbjct: 46 LFNNKNLLVSAPTASGKTLIGEMALVHNTINKDMIGLYLVPLRALASEKY 95
>gi|150401244|ref|YP_001325010.1| DEAD/DEAH box helicase [Methanococcus aeolicus Nankai-3]
gi|150013947|gb|ABR56398.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
Nankai-3]
Length = 816
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
++ K+ V++ TS GKTL+GE+ +K LK + +F++P ++L ++KY
Sbjct: 202 LLDGKDLVITSATSSGKTLIGELAGIKNLKENKGKFLFLVPLVALANQKY 251
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
++ K+ V++ TS GKTL+GE+ +K LK + +F++P ++L ++KY
Sbjct: 202 LLDGKDLVITSATSSGKTLIGELAGIKNLKENKGKFLFLVPLVALANQKY 251
>gi|194388308|dbj|BAG65538.1| unnamed protein product [Homo sapiens]
Length = 941
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 28 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 86
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 87 TSPIKALSNQKYREM---YEEFQ 106
>gi|14521089|ref|NP_126564.1| ski2-like helicase [Pyrococcus abyssi GE5]
gi|18203529|sp|Q9V0A9.1|HELS_PYRAB RecName: Full=Putative ski2-type helicase
gi|5458306|emb|CAB49795.1| DNA helicase [Pyrococcus abyssi GE5]
gi|380741653|tpe|CCE70287.1| TPA: ski2-like helicase [Pyrococcus abyssi GE5]
Length = 715
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ +N +++IPT+ GKTL+ EI I +L + A++I+P +L EK++
Sbjct: 36 VLEGENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEKFREF 88
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ +N +++IPT+ GKTL+ EI I +L + A++I+P +L EK++
Sbjct: 36 VLEGENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEKFREF 88
>gi|345794053|ref|XP_859420.2| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 4
[Canis lupus familiaris]
Length = 941
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 28 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 86
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 87 TSPIKALSNQKYREM---YEEFQ 106
>gi|195391276|ref|XP_002054289.1| GJ22884 [Drosophila virilis]
gi|194152375|gb|EDW67809.1| GJ22884 [Drosophila virilis]
Length = 2179
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLE-GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE 98
LP SL + Y+SL K + CL N N +L PT GKT+V EI I +
Sbjct: 1316 LPVSSLHNALYESLYKFTHFNPIQTQIFHCLYHTDN-NVLLGAPTGSGKTIVAEIAIFRA 1374
Query: 99 LKIKQK-SAIFILPYISLVHEKYQSLAKAAEEFKFYLEVLE 138
L ++ K ++I P +LV E+ + E L+V+E
Sbjct: 1375 LNLQPKCKVVYIAPLKALVKERIADWQQRFERSSLGLKVVE 1415
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEK 49
+ N +L PT GKT+V EI I + L ++ K ++I P +LV E+
Sbjct: 1350 DNNVLLGAPTGSGKTIVAEIAIFRALNLQPKCKVVYIAPLKALVKER 1396
>gi|70606102|ref|YP_254972.1| DNA helicase [Sulfolobus acidocaldarius DSM 639]
gi|449066304|ref|YP_007433386.1| DNA helicase [Sulfolobus acidocaldarius N8]
gi|449068580|ref|YP_007435661.1| DNA helicase [Sulfolobus acidocaldarius Ron12/I]
gi|121723841|sp|Q4JC00.1|HELS_SULAC RecName: Full=Putative ski2-type helicase
gi|68566750|gb|AAY79679.1| DNA helicase [Sulfolobus acidocaldarius DSM 639]
gi|449034812|gb|AGE70238.1| DNA helicase [Sulfolobus acidocaldarius N8]
gi|449037088|gb|AGE72513.1| DNA helicase [Sulfolobus acidocaldarius Ron12/I]
Length = 705
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+I++K +++ PT+ GKTL+ E+ ++ L K AI++ P +L EKY + K E+
Sbjct: 39 LIEDKRLLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRALTSEKYSTF-KDWEKL 97
Query: 131 KFYLEV 136
F + V
Sbjct: 98 GFKVGV 103
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++++K +++ PT+ GKTL+ E+ ++ L K AI++ P +L EKY +
Sbjct: 39 LIEDKRLLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRALTSEKYSTF 91
>gi|14591093|ref|NP_143168.1| ski2-like helicase [Pyrococcus horikoshii OT3]
gi|18202084|sp|O59025.1|HELS_PYRHO RecName: Full=Putative ski2-type helicase
gi|3257700|dbj|BAA30383.1| 715aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 715
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+++ +N +++IPT+ GKTL+ EI I+ L + A++++P +L EK++ E
Sbjct: 36 ILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEKFKEFKDWEE 93
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ +N +++IPT+ GKTL+ EI I+ L + A++++P +L EK++ E
Sbjct: 36 ILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEKFKEFKDWEE 93
>gi|451344863|ref|YP_007443494.1| DEAD-like helicase [Bacillus amyloliquefaciens IT-45]
gi|449848621|gb|AGF25613.1| DEAD-like helicase [Bacillus amyloliquefaciens IT-45]
Length = 829
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 47 HEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA 106
+EKY+ L + A++ LE C + N N V+ + T GKT+VG +++ L + A
Sbjct: 30 NEKYEELLRPAQQR--VLETWCNDFRDNPNTVIKMNTGSGKTVVGLLMLQSYLNEGKGPA 87
Query: 107 IFILPYISLVHE 118
I+I+P L+ +
Sbjct: 88 IYIVPDNYLIEQ 99
>gi|123502517|ref|XP_001328316.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121911257|gb|EAY16093.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 930
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEK 119
E KC KN ++ +PTSGGKT+ +I I + L + A++ LP++SL EK
Sbjct: 98 EWKC-----GKNGIILVPTSGGKTVAADIAIAQMLERDPDGKALYALPFVSLASEK 148
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEK 49
KN ++ +PTSGGKT+ +I I + L + A++ LP++SL EK
Sbjct: 103 KNGIILVPTSGGKTVAADIAIAQMLERDPDGKALYALPFVSLASEK 148
>gi|395510300|ref|XP_003759416.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Sarcophilus
harrisii]
Length = 1013
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 101 GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIFT 159
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 160 SPIKALSNQKYREM---YEEFQ 178
>gi|196229224|ref|ZP_03128089.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
gi|196226456|gb|EDY20961.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
Length = 849
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE+ KN +L+ PT GK+LV L ++ L + + +++ P +LV+EK+ +L
Sbjct: 39 ETAILELFDEKNVILNTPTGSGKSLVATALHLQSLA-RGRRSVYTCPIKALVNEKWLALC 97
Query: 125 K 125
+
Sbjct: 98 R 98
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN +L+ PT GK+LV L ++ L + + +++ P +LV+EK+ +L +
Sbjct: 45 LFDEKNVILNTPTGSGKSLVATALHLQSLA-RGRRSVYTCPIKALVNEKWLALCR 98
>gi|124486563|ref|YP_001031179.1| ski2-like helicase [Methanocorpusculum labreanum Z]
gi|124364104|gb|ABN07912.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 726
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 51 QSLAKAAEEFKFYLEGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
++ AK E + + +C+ + KN + +IPT+ GKTL+ E+ + KE+ K ++
Sbjct: 14 EAYAKNGIEELYPPQAECVNAGLFNRKNILAAIPTASGKTLIAEMAMQKEVAEGGK-CLY 72
Query: 109 ILPYISLVHEKYQSLA 124
I+P +L EKY+ +
Sbjct: 73 IVPLKALASEKYEDFS 88
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+ KN + +IPT+ GKTL+ E+ + KE+ K ++I+P +L EKY+ +
Sbjct: 36 LFNRKNILAAIPTASGKTLIAEMAMQKEVAEGGK-CLYIVPLKALASEKYEDFS 88
>gi|391228546|ref|ZP_10264752.1| superfamily II RNA helicase [Opitutaceae bacterium TAV1]
gi|391218207|gb|EIP96627.1| superfamily II RNA helicase [Opitutaceae bacterium TAV1]
Length = 896
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE+ KN +L+ PT GK+LV K L ++S ++ P +LV+EK+ SL
Sbjct: 51 EEAILELFDGKNVILNTPTGSGKSLVAAAFHFKALCAGERS-VYTCPIKALVNEKFLSLC 109
Query: 125 K 125
+
Sbjct: 110 R 110
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN +L+ PT GK+LV K L ++S ++ P +LV+EK+ SL +
Sbjct: 57 LFDGKNVILNTPTGSGKSLVAAAFHFKALCAGERS-VYTCPIKALVNEKFLSLCR 110
>gi|373850491|ref|ZP_09593292.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
gi|372476656|gb|EHP36665.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
Length = 924
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE+ KN +L+ PT GK+LV K L ++S ++ P +LV+EK+ SL
Sbjct: 79 EEAILELFDGKNVILNTPTGSGKSLVAAAFHFKALCAGERS-VYTCPIKALVNEKFLSLC 137
Query: 125 K 125
+
Sbjct: 138 R 138
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN +L+ PT GK+LV K L ++S ++ P +LV+EK+ SL +
Sbjct: 85 LFDGKNVILNTPTGSGKSLVAAAFHFKALCAGERS-VYTCPIKALVNEKFLSLCR 138
>gi|126315118|ref|XP_001365599.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Monodelphis domestica]
Length = 1036
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 124 GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIFT 182
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 183 SPIKALSNQKYREM---YEEFQ 201
>gi|147920885|ref|YP_685308.1| ski2-like helicase [Methanocella arvoryzae MRE50]
gi|121690545|sp|Q0W6L1.1|HELS_UNCMA RecName: Full=Putative ski2-type helicase
gi|110620704|emb|CAJ35982.1| putative ski2-type helicase [Methanocella arvoryzae MRE50]
Length = 740
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
++ KN + +IPT+ GKTL+ E+ ++K + K AI+I+P +L EKY
Sbjct: 36 LLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGK-AIYIVPLKALASEKY 84
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
++ KN + +IPT+ GKTL+ E+ ++K + K AI+I+P +L EKY
Sbjct: 36 LLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGK-AIYIVPLKALASEKY 84
>gi|402219586|gb|EJT99659.1| antiviral helicase [Dacryopinax sp. DJM-731 SS1]
Length = 1000
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG----KCLEMIQNKNCVLSIPTSGGKTLVGEILIM 96
PYI + ++ S +K A E+KF L+ + +N++ ++S TS GKT+V E I
Sbjct: 50 PYIPI--SQHVSPSKPAREYKFVLDPFQKVSVHAIERNESVLVSAHTSAGKTVVAEYAIA 107
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ L+ KQ+ I+ P +L ++KY+ A+
Sbjct: 108 QCLRDKQR-VIYTSPIKALSNQKYRDFAE 135
>gi|294811244|ref|ZP_06769887.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces
clavuligerus ATCC 27064]
gi|326439802|ref|ZP_08214536.1| helicase [Streptomyces clavuligerus ATCC 27064]
gi|294323843|gb|EFG05486.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces
clavuligerus ATCC 27064]
Length = 1040
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
++ + ++S PTS GKT++GEI ++ + + + A+F+LP +LV+++Y
Sbjct: 306 LLDGNSALVSAPTSAGKTMIGEIASLRAVA-QGRKAVFLLPTRALVNDQY 354
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
++ + ++S PTS GKT++GEI ++ + + + A+F+LP +LV+++Y
Sbjct: 306 LLDGNSALVSAPTSAGKTMIGEIASLRAVA-QGRKAVFLLPTRALVNDQY 354
>gi|254390292|ref|ZP_05005510.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces
clavuligerus ATCC 27064]
gi|197703997|gb|EDY49809.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces
clavuligerus ATCC 27064]
Length = 1035
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
++ + ++S PTS GKT++GEI ++ + + + A+F+LP +LV+++Y
Sbjct: 301 LLDGNSALVSAPTSAGKTMIGEIASLRAVA-QGRKAVFLLPTRALVNDQY 349
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
++ + ++S PTS GKT++GEI ++ + + + A+F+LP +LV+++Y
Sbjct: 301 LLDGNSALVSAPTSAGKTMIGEIASLRAVA-QGRKAVFLLPTRALVNDQY 349
>gi|259013209|ref|NP_001158354.1| superkiller viralicidic activity 2-like 2 [Oryzias latipes]
gi|242389872|dbj|BAH80441.1| superkiller viralicidic activity 2-like 2 [Oryzias latipes]
Length = 1036
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 51 QSLAKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA 106
Q + KAA+E+ F L+ E I N++ ++S TS GKT+ E I L+ KQ+
Sbjct: 117 QRVGKAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-V 175
Query: 107 IFILPYISLVHEKYQSLAKAAEEFK 131
IF P +L ++KY+ + EEF+
Sbjct: 176 IFTSPIKALSNQKYREM---YEEFQ 197
>gi|412992553|emb|CCO18533.1| putative DNA helicase [Bathycoccus prasinos]
Length = 1188
Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+I + V+S PT GKTL+GE IM L ++ K AI+ P +L ++K + K
Sbjct: 156 LIDGHSLVVSAPTGSGKTLIGETTIMNAL-MRGKKAIYTTPLKALSNQKLREFQK 209
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ + V+S PT GKTL+GE IM L ++ K AI+ P +L ++K + K +
Sbjct: 156 LIDGHSLVVSAPTGSGKTLIGETTIMNAL-MRGKKAIYTTPLKALSNQKLREFQKMFGKR 214
Query: 61 KFYLEGKCLEMIQNKNCVLSIPT 83
K L+ +E+ K ++ + T
Sbjct: 215 KVGLKTGDVEVNAEKAEIMVMTT 237
>gi|383856639|ref|XP_003703815.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Megachile rotundata]
Length = 1007
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 51 QSLAKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA 106
+ + K A+E+KF L+ E I N++ ++S TS GKT+V E I L+ KQ+
Sbjct: 103 RKVTKPAKEYKFLLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQR-V 161
Query: 107 IFILPYISLVHEKYQSLAKAAEEFK 131
I+ P +L ++KY+ EEFK
Sbjct: 162 IYTTPIKALSNQKYREF---YEEFK 183
>gi|389852192|ref|YP_006354426.1| DNA/RNA helicase [Pyrococcus sp. ST04]
gi|388249498|gb|AFK22351.1| putative DNA/RNA helicase [Pyrococcus sp. ST04]
Length = 723
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 35/53 (66%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ KN +++IPT+ GKTL+ EI ++ + + A++++P +L EK++
Sbjct: 36 VLEGKNLLVAIPTASGKTLIAEIAMVHRVLTEGGKAVYLVPLKALAEEKFKEF 88
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 35/53 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ KN +++IPT+ GKTL+ EI ++ + + A++++P +L EK++
Sbjct: 36 VLEGKNLLVAIPTASGKTLIAEIAMVHRVLTEGGKAVYLVPLKALAEEKFKEF 88
>gi|170038918|ref|XP_001847294.1| ATP-dependent RNA helicase DOB1 [Culex quinquefasciatus]
gi|167862535|gb|EDS25918.1| ATP-dependent RNA helicase DOB1 [Culex quinquefasciatus]
Length = 1045
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
K A+E++F L + + + I+N+ VL S TS GKT+V E I K L KQ+ I+
Sbjct: 131 GKPAKEYQFVLDPFQKEAILCIENQQSVLVSAHTSAGKTVVAEYAIAKSLAEKQR-VIYT 189
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ EEFK
Sbjct: 190 TPIKALSNQKYREF---HEEFK 208
Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 2 VQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++N+ VL S TS GKT+V E I K L KQ+ I+ P +L ++KY+ EEF
Sbjct: 152 IENQQSVLVSAHTSAGKTVVAEYAIAKSLAEKQR-VIYTTPIKALSNQKYREF---HEEF 207
Query: 61 K 61
K
Sbjct: 208 K 208
>gi|227495430|ref|ZP_03925746.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
gi|226830977|gb|EEH63360.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
Length = 934
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 49 KYQSLAKA--AEEFKFYLEG---KCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK 102
KY +A A E F+L+ + +E ++N N +++ PT GKT+VGE + L
Sbjct: 37 KYDKTERATFAAELDFFLDDFQMQGMESVENGHNVLVAAPTGAGKTMVGEFALHMALSCG 96
Query: 103 QKSAIFILPYISLVHEKYQSLAK 125
Q+ A + P +L ++KY+ L +
Sbjct: 97 QR-AFYTTPIKALSNQKYRELCE 118
>gi|296108829|ref|YP_003615778.1| DEAD/DEAH box helicase domain protein [methanocaldococcus infernus
ME]
gi|295433643|gb|ADG12814.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
ME]
Length = 791
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++ K+ ++ TS GKTL+GE+ +K L + +F++P ++L ++KY + +EF
Sbjct: 218 LLEGKDLLVVSATSSGKTLIGELAGIKNLIEGKGKFLFLVPLVALANQKYNEFRERYKEF 277
Query: 131 KFYLEV 136
+ L V
Sbjct: 278 EVSLRV 283
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 39/64 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ K+ ++ TS GKTL+GE+ +K L + +F++P ++L ++KY + +EF
Sbjct: 218 LLEGKDLLVVSATSSGKTLIGELAGIKNLIEGKGKFLFLVPLVALANQKYNEFRERYKEF 277
Query: 61 KFYL 64
+ L
Sbjct: 278 EVSL 281
>gi|195443932|ref|XP_002069642.1| GK11465 [Drosophila willistoni]
gi|194165727|gb|EDW80628.1| GK11465 [Drosophila willistoni]
Length = 2181
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLE-GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE 98
LP +L + Y+SL K + CL N N +L PT GKT+V EI I +
Sbjct: 1316 LPVTTLKNALYESLYKFTHFNPIQTQIFHCLYHTDN-NVLLGAPTGSGKTIVAEIAIFRA 1374
Query: 99 LKIKQKS-AIFILPYISLVHEKYQSLAKAAEEFKFYLEVLE 138
L + KS ++I P +LV E+ + E L+V+E
Sbjct: 1375 LNKEPKSKVVYIAPLKALVKERIADWQQRFERSPLGLKVVE 1415
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEK 49
+ N +L PT GKT+V EI I + L + KS ++I P +LV E+
Sbjct: 1350 DNNVLLGAPTGSGKTIVAEIAIFRALNKEPKSKVVYIAPLKALVKER 1396
>gi|380026693|ref|XP_003697079.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2
[Apis florea]
Length = 1010
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
+K A+E+KF L+ E I N++ ++S TS GKT+V E I L+ KQ+ I+
Sbjct: 109 SKPAKEYKFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQR-VIYT 167
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ EEFK
Sbjct: 168 TPIKALSNQKYREF---FEEFK 186
>gi|290957400|ref|YP_003488582.1| helicase [Streptomyces scabiei 87.22]
gi|260646926|emb|CBG70025.1| putative helicase [Streptomyces scabiei 87.22]
Length = 1048
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ +N ++ PTS GKT+VGE+ + + +S +F+LP +LV+E+Y+ +
Sbjct: 317 LLKGENVLVIAPTSSGKTMVGELAALSATQNGGRS-VFLLPTKALVNEQYERFTR 370
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ +N ++ PTS GKT+VGE+ + + +S +F+LP +LV+E+Y+ +
Sbjct: 317 LLKGENVLVIAPTSSGKTMVGELAALSATQNGGRS-VFLLPTKALVNEQYERFTR 370
>gi|257784324|ref|YP_003179541.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium parvulum
DSM 20469]
gi|257472831|gb|ACV50950.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium parvulum
DSM 20469]
Length = 1120
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMI-QNKNCVLSIPTSGGKTLVGEILIMKE 98
LPY L S+ + E L+ K LE++ Q ++C+ + T GK+L+ ++
Sbjct: 618 LPYEELTQTLVTSMIGSRELLP--LQKKTLEVLSQGESCLSVMATGRGKSLIFQVYAACV 675
Query: 99 LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
++ K ++F+ P +L++++ QS+ E +EVL
Sbjct: 676 ALLQHKMSVFVYPLRALINDQVQSMKNTFEPLGISVEVL 714
>gi|158341568|ref|YP_001522732.1| dead/deah box helicase domain-containing protein [Acaryochloris
marina MBIC11017]
gi|158311809|gb|ABW33418.1| dead/deah box helicase domain protein [Acaryochloris marina
MBIC11017]
Length = 1007
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 72 IQNKNCVLSI-PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
I + + +L+I PT GKT VGE+ ++ + + + A+F+LPY +L +EKY+ ++
Sbjct: 296 ILDGSSLLAIAPTGSGKTFVGELAAIQAI-CEGRKAVFLLPYRALTNEKYEQFSQ 349
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
PT GKT VGE+ ++ + + + A+F+LPY +L +EKY+ ++
Sbjct: 307 PTGSGKTFVGELAAIQAI-CEGRKAVFLLPYRALTNEKYEQFSQ 349
>gi|389585018|dbj|GAB67749.1| helicase [Plasmodium cynomolgi strain B]
Length = 1104
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
KN + +IPT GKT++ +ILI++ + K AI LP +SL++EK
Sbjct: 262 KNFLFNIPTGMGKTIIYDILIIRLVLYKGYRAIVTLPTVSLINEK 306
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
KN + +IPT GKT++ +ILI++ + K AI LP +SL++EK
Sbjct: 262 KNFLFNIPTGMGKTIIYDILIIRLVLYKGYRAIVTLPTVSLINEK 306
>gi|336406120|ref|ZP_08586782.1| hypothetical protein HMPREF0127_04095 [Bacteroides sp. 1_1_30]
gi|423217180|ref|ZP_17203676.1| hypothetical protein HMPREF1061_00449 [Bacteroides caccae
CL03T12C61]
gi|335935666|gb|EGM97615.1| hypothetical protein HMPREF0127_04095 [Bacteroides sp. 1_1_30]
gi|392629080|gb|EIY23095.1| hypothetical protein HMPREF1061_00449 [Bacteroides caccae
CL03T12C61]
Length = 1116
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 7 CVLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHE 48
++SIPTS GKT +GEI I+ L + K+ I FI PY SL +E
Sbjct: 293 SIVSIPTSSGKTRIGEIAILNCLLNEPKAKILFIAPYRSLAYE 335
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 77 CVLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHE 118
++SIPTS GKT +GEI I+ L + K+ I FI PY SL +E
Sbjct: 293 SIVSIPTSSGKTRIGEIAILNCLLNEPKAKILFIAPYRSLAYE 335
>gi|336121347|ref|YP_004576122.1| DEAD/DEAH box helicase domain-containing protein
[Methanothermococcus okinawensis IH1]
gi|334855868|gb|AEH06344.1| DEAD/DEAH box helicase domain protein [Methanothermococcus
okinawensis IH1]
Length = 870
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
++ K+ +++ TS GKTL+GE+ +K LK + +F++P ++L ++KY
Sbjct: 222 LLDGKDLIITSATSSGKTLIGELAGIKNLKEGRGKLLFLVPLVALANQKY 271
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
++ K+ +++ TS GKTL+GE+ +K LK + +F++P ++L ++KY
Sbjct: 222 LLDGKDLIITSATSSGKTLIGELAGIKNLKEGRGKLLFLVPLVALANQKY 271
>gi|328792380|ref|XP_624031.2| PREDICTED: superkiller viralicidic activity 2-like 2-like isoform 2
[Apis mellifera]
Length = 1008
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
+K A+E+KF L+ E I N++ ++S TS GKT+V E I L+ KQ+ I+
Sbjct: 107 SKPAKEYKFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQR-VIYT 165
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ EEFK
Sbjct: 166 TPIKALSNQKYREF---FEEFK 184
>gi|86563272|ref|NP_498250.3| Protein POLQ-1 [Caenorhabditis elegans]
gi|373220425|emb|CCD73325.1| Protein POLQ-1 [Caenorhabditis elegans]
Length = 1661
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++++ + S PTS GK++V E+L K +K +F+LPYIS+ EK + +
Sbjct: 43 EDQHLIFSAPTSAGKSIVAELLSWKVASTGRK-VLFVLPYISVAREKLHQIQR 94
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++++ + S PTS GK++V E+L K +K +F+LPYIS+ EK + +
Sbjct: 43 EDQHLIFSAPTSAGKSIVAELLSWKVASTGRK-VLFVLPYISVAREKLHQIQR 94
>gi|296242069|ref|YP_003649556.1| DEAD/DEAH box helicase [Thermosphaera aggregans DSM 11486]
gi|296094653|gb|ADG90604.1| DEAD/DEAH box helicase domain protein [Thermosphaera aggregans DSM
11486]
Length = 712
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+++ +N V+S PT+ GKTL+ E+L++K + + + +++ P +L EK++ ++ ++
Sbjct: 39 VLEGRNLVVSTPTASGKTLIAEMLLVKTV-LNEGIGVYLTPLKALASEKHREFSRLSQ 95
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ +N V+S PT+ GKTL+ E+L++K + + + +++ P +L EK++ ++ ++
Sbjct: 39 VLEGRNLVVSTPTASGKTLIAEMLLVKTV-LNEGIGVYLTPLKALASEKHREFSRLSQ 95
>gi|20094271|ref|NP_614118.1| helicase [Methanopyrus kandleri AV19]
gi|19887311|gb|AAM02048.1| Archaea-specific Superfamily II helicase [Methanopyrus kandleri
AV19]
Length = 818
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 64 LEGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
++ KC+E +++ +N ++ PT GKTLV E+ + E+ + + ++++P ++L ++K++
Sbjct: 214 VQTKCVERGLLEGRNLLVVSPTGSGKTLVAELAGLTEVLREGRKMVYLVPLVALANQKHR 273
Query: 122 SL 123
Sbjct: 274 EF 275
Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 34/53 (64%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ +N ++ PT GKTLV E+ + E+ + + ++++P ++L ++K++
Sbjct: 223 LLEGRNLLVVSPTGSGKTLVAELAGLTEVLREGRKMVYLVPLVALANQKHREF 275
>gi|380026691|ref|XP_003697078.1| PREDICTED: superkiller viralicidic activity 2-like 2 isoform 1
[Apis florea]
Length = 1022
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
+K A+E+KF L+ E I N++ ++S TS GKT+V E I L+ KQ+ I+
Sbjct: 113 SKPAKEYKFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQR-VIYT 171
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ EEFK
Sbjct: 172 TPIKALSNQKYREF---FEEFK 190
>gi|328792378|ref|XP_003251718.1| PREDICTED: superkiller viralicidic activity 2-like 2-like isoform 1
[Apis mellifera]
Length = 1035
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
+K A+E+KF L+ E I N++ ++S TS GKT+V E I L+ KQ+ I+
Sbjct: 126 SKPAKEYKFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQR-VIYT 184
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ EEFK
Sbjct: 185 TPIKALSNQKYREF---FEEFK 203
>gi|261402536|ref|YP_003246760.1| DEAD/DEAH box helicase [Methanocaldococcus vulcanius M7]
gi|261369529|gb|ACX72278.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
M7]
Length = 816
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++N++ ++ TS GKTL+GE+ +K L + IF++P ++L ++KY + E+
Sbjct: 226 LLENRDLLVVSATSSGKTLIGELAGIKNLIEGKGKFIFLVPLVALANQKYAEFKERYEKL 285
Query: 131 KF 132
F
Sbjct: 286 GF 287
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++N++ ++ TS GKTL+GE+ +K L + IF++P ++L ++KY + E+
Sbjct: 226 LLENRDLLVVSATSSGKTLIGELAGIKNLIEGKGKFIFLVPLVALANQKYAEFKERYEKL 285
Query: 61 KF 62
F
Sbjct: 286 GF 287
>gi|134046307|ref|YP_001097792.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C5]
gi|132663932|gb|ABO35578.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C5]
Length = 707
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAK 55
+ + KN ++ IPT+ GKTL+GE+ + L + K AIFI+P +L EK++ +
Sbjct: 28 LDKTKNFLVCIPTASGKTLIGEMAFINNLLNENKEPTGKKAIFIVPLKALATEKFEEFKE 87
Query: 56 AAEEF 60
E++
Sbjct: 88 KYEKY 92
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAK 125
+ + KN ++ IPT+ GKTL+GE+ + L + K AIFI+P +L EK++ +
Sbjct: 28 LDKTKNFLVCIPTASGKTLIGEMAFINNLLNENKEPTGKKAIFIVPLKALATEKFEEFKE 87
Query: 126 AAEEF 130
E++
Sbjct: 88 KYEKY 92
>gi|150398790|ref|YP_001322557.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
vannielii SB]
gi|226740607|sp|A6UN73.1|HELS_METVS RecName: Full=Putative ski2-type helicase
gi|150011493|gb|ABR53945.1| DEAD/DEAH box helicase domain protein [Methanococcus vannielii
SB]
Length = 751
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 57
++KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L EK+ K
Sbjct: 31 KSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKALASEKFDEFQKKY 90
Query: 58 EEF 60
E +
Sbjct: 91 ETY 93
Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
++KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L EK+ K
Sbjct: 31 KSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKALASEKFDEFQKKY 90
Query: 128 EEF 130
E +
Sbjct: 91 ETY 93
>gi|374636464|ref|ZP_09708033.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
gi|373558943|gb|EHP85261.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
Length = 799
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+++NKN ++ TS GKTL+GE+ +K L + +F++P ++L ++KY
Sbjct: 213 LLENKNLLIMSATSSGKTLIGELAGIKNLLDGKGKFLFLVPLVALANQKY 262
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+++NKN ++ TS GKTL+GE+ +K L + +F++P ++L ++KY
Sbjct: 213 LLENKNLLIMSATSSGKTLIGELAGIKNLLDGKGKFLFLVPLVALANQKY 262
>gi|254787061|ref|YP_003074490.1| CRISPR-associated helicase Cas3 domain-containing protein
[Teredinibacter turnerae T7901]
gi|237684401|gb|ACR11665.1| CRISPR-associated helicase Cas3 domain protein [Teredinibacter
turnerae T7901]
Length = 818
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 9 LSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLV----HEKYQSLAKAAEEFKFY 63
LS+PT GGKTL ++ K+ K I+I+PY S++ H + L A +EF +
Sbjct: 283 LSVPTGGGKTLASLRFALQHAKLNKLDRVIYIIPYTSIIEQNAHVAREVLEHAGDEFSWV 342
Query: 64 LE 65
LE
Sbjct: 343 LE 344
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 79 LSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLV----HEKYQSLAKAAEEFKFY 133
LS+PT GGKTL ++ K+ K I+I+PY S++ H + L A +EF +
Sbjct: 283 LSVPTGGGKTLASLRFALQHAKLNKLDRVIYIIPYTSIIEQNAHVAREVLEHAGDEFSWV 342
Query: 134 LE 135
LE
Sbjct: 343 LE 344
>gi|134045737|ref|YP_001097223.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C5]
gi|132663362|gb|ABO35008.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C5]
Length = 747
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 57
+ KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ +
Sbjct: 30 KTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKGLFIVPLKALANEKFDEFREKY 89
Query: 58 EEF 60
E++
Sbjct: 90 EKY 92
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
+ KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ +
Sbjct: 30 KTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKGLFIVPLKALANEKFDEFREKY 89
Query: 128 EEF 130
E++
Sbjct: 90 EKY 92
>gi|159906146|ref|YP_001549808.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C6]
gi|159887639|gb|ABX02576.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C6]
Length = 747
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 57
+ KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ +
Sbjct: 30 KTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKGLFIVPLKALANEKFDEFREKY 89
Query: 58 EEF 60
E++
Sbjct: 90 EKY 92
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
+ KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ +
Sbjct: 30 KTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKGLFIVPLKALANEKFDEFREKY 89
Query: 128 EEF 130
E++
Sbjct: 90 EKY 92
>gi|340624188|ref|YP_004742641.1| superfamily II helicase [Methanococcus maripaludis X1]
gi|339904456|gb|AEK19898.1| superfamily II helicase [Methanococcus maripaludis X1]
Length = 747
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 57
+ KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ +
Sbjct: 30 KTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKGLFIVPLKALANEKFDEFKEKY 89
Query: 58 EEF 60
E++
Sbjct: 90 EKY 92
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
+ KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ +
Sbjct: 30 KTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKGLFIVPLKALANEKFDEFKEKY 89
Query: 128 EEF 130
E++
Sbjct: 90 EKY 92
>gi|116670732|ref|YP_831665.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116610841|gb|ABK03565.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
Length = 964
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 48 EKYQSLAKAAEEFKFYL---------------EGKCLEMIQNKNCVLSIPTSGGKTLVGE 92
E Y++ A+ E K YL CL + Q + +++ PT GKT+VGE
Sbjct: 12 ELYRASAERTAEAKTYLGAFVRTLDFELDDFQRQACLSLQQGRGVLVAAPTGAGKTIVGE 71
Query: 93 ILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
I L+ + A + P +L ++KY LA
Sbjct: 72 FAIYLALQ-RALKAFYTTPIKALSNQKYSELA 102
>gi|16081891|ref|NP_394295.1| ski2-like helicase [Thermoplasma acidophilum DSM 1728]
gi|18202974|sp|Q9HJX7.1|HELS_THEAC RecName: Full=Putative ski2-type helicase
gi|10640112|emb|CAC11964.1| DNA helicase related protein [Thermoplasma acidophilum]
Length = 674
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 59 EFKFYLEGK-CLEMI-QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
+F+ Y + +E I + +N V+S+PT+ GKTL+ I + + KS I+I+P SL
Sbjct: 20 DFQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKS-IYIVPLRSLA 78
Query: 117 HEKYQSLAK 125
EK+ L++
Sbjct: 79 MEKFSELSR 87
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ +N V+S+PT+ GKTL+ I + + KS I+I+P SL EK+ L++
Sbjct: 36 KGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKS-IYIVPLRSLAMEKFSELSR 87
>gi|298674154|ref|YP_003725904.1| DEAD/DEAH box helicase [Methanohalobium evestigatum Z-7303]
gi|298287142|gb|ADI73108.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
Z-7303]
Length = 733
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ NKN + +IPT+ GKTL+ E+ ++K + K ++I+P +L EK++ +
Sbjct: 36 LLDNKNLLAAIPTASGKTLISELAMLKSISNGGK-CLYIVPLRALASEKFERFKQ 89
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ NKN + +IPT+ GKTL+ E+ ++K + K ++I+P +L EK++ +
Sbjct: 36 LLDNKNLLAAIPTASGKTLISELAMLKSISNGGK-CLYIVPLRALASEKFERFKQ 89
>gi|340708607|ref|XP_003392914.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Bombus
terrestris]
Length = 1079
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMK 97
Y+SL +++ K A+E+KF L+ E I N++ ++S TS GKT+V E I
Sbjct: 162 YVSLENKQ----GKPAKEYKFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAC 217
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
L+ KQ+ I+ P +L ++KY+ + E+
Sbjct: 218 SLRDKQR-VIYTTPIKALSNQKYREFFEEFED 248
>gi|383456753|ref|YP_005370742.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
gi|380733025|gb|AFE09027.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
Length = 853
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
++S V SL A EE LE++ +K+ L PT GK+LV L K +
Sbjct: 32 FVSYVATNGLSLYSAQEE-------AILELLSDKHLFLKTPTGSGKSLVAMALHFKAMA- 83
Query: 102 KQKSAIFILPYISLVHEKYQSLAKA 126
+ K + + P +LV+EK+ +L+KA
Sbjct: 84 EGKVSFYTCPIKALVNEKFFALSKA 108
>gi|182415590|ref|YP_001820656.1| DEAD/DEAH box helicase [Opitutus terrae PB90-1]
gi|177842804|gb|ACB77056.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
Length = 876
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE++ N +L+ PT GK+LV L K L ++S ++ P +LV+EK+ +L
Sbjct: 41 EEAILELLAGHNVILNTPTGSGKSLVASALHFKSLCAGERS-VYTCPIKALVNEKFLALC 99
Query: 125 K 125
+
Sbjct: 100 R 100
Score = 35.8 bits (81), Expect = 6.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ N +L+ PT GK+LV L K L ++S ++ P +LV+EK+ +L +
Sbjct: 47 LLAGHNVILNTPTGSGKSLVASALHFKSLCAGERS-VYTCPIKALVNEKFLALCR 100
>gi|150402065|ref|YP_001329359.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
maripaludis C7]
gi|150033095|gb|ABR65208.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
C7]
Length = 746
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ + E+
Sbjct: 32 KNFLICIPTASGKTLIGEMALLNHILDENRNLTGKKGLFIVPLKALANEKFDEFREKYEK 91
Query: 60 F 60
+
Sbjct: 92 Y 92
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ + E+
Sbjct: 32 KNFLICIPTASGKTLIGEMALLNHILDENRNLTGKKGLFIVPLKALANEKFDEFREKYEK 91
Query: 130 F 130
+
Sbjct: 92 Y 92
>gi|45358453|ref|NP_988010.1| superfamily II helicase [Methanococcus maripaludis S2]
gi|44921211|emb|CAF30446.1| superfamily II helicase [Methanococcus maripaludis S2]
Length = 747
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 57
+ KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ +
Sbjct: 30 KTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKGLFIVPLKALANEKFDEFKEKY 89
Query: 58 EEF 60
E++
Sbjct: 90 EKY 92
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
+ KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L +EK+ +
Sbjct: 30 KTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKGLFIVPLKALANEKFDEFKEKY 89
Query: 128 EEF 130
E++
Sbjct: 90 EKY 92
>gi|412990681|emb|CCO18053.1| predicted protein [Bathycoccus prasinos]
Length = 1828
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSL 53
+ +N V PTSGGK+LV +IL+ + L + K + +LP++SL E+ + L
Sbjct: 178 LTHGQNIVYCAPTSGGKSLVADILLARRLTQYKGCICLLVLPFVSLCVERARDL 231
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSL 123
+ +N V PTSGGK+LV +IL+ + L + K + +LP++SL E+ + L
Sbjct: 178 LTHGQNIVYCAPTSGGKSLVADILLARRLTQYKGCICLLVLPFVSLCVERARDL 231
>gi|156553729|ref|XP_001600961.1| PREDICTED: superkiller viralicidic activity 2-like 2-like isoform 1
[Nasonia vitripennis]
gi|345497584|ref|XP_003428027.1| PREDICTED: superkiller viralicidic activity 2-like 2-like isoform 2
[Nasonia vitripennis]
Length = 1001
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 55 KAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 110
K A+E+KF L+ E I N++ ++S TS GKT+V E I L+ KQ+ I+
Sbjct: 94 KPAKEYKFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQR-VIYTT 152
Query: 111 PYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ EEFK
Sbjct: 153 PIKALSNQKYREF---YEEFK 170
>gi|159113600|ref|XP_001707026.1| DNA helicase [Giardia lamblia ATCC 50803]
gi|157435128|gb|EDO79352.1| DNA helicase [Giardia lamblia ATCC 50803]
Length = 899
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 48
++ ++S PTS GK+LV I I++ L + +KSAI +P+++L E
Sbjct: 138 RHILISAPTSAGKSLVAFIYILRCLSLCKKSAIIAVPFVALADE 181
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
++ ++S PTS GK+LV I I++ L + +KSAI +P+++L E
Sbjct: 138 RHILISAPTSAGKSLVAFIYILRCLSLCKKSAIIAVPFVALADE 181
>gi|154151997|ref|YP_001405615.1| ski2-like helicase [Methanoregula boonei 6A8]
gi|226740606|sp|A7IB61.1|HELS_METB6 RecName: Full=Putative ski2-type helicase
gi|154000549|gb|ABS56972.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
Length = 723
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 65 EGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ C+E ++ KN +++IPT+ GKTL+ E+ + + + K ++I+P +L EKY+
Sbjct: 28 QAACVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGK-CLYIVPLKALASEKYEE 86
Query: 123 LA 124
Sbjct: 87 FG 88
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
++ KN +++IPT+ GKTL+ E+ + + + K ++I+P +L EKY+
Sbjct: 36 LLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGK-CLYIVPLKALASEKYEEFG 88
>gi|350413173|ref|XP_003489905.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Bombus
impatiens]
Length = 1034
Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMK 97
Y+SL +++ K A+E+KF L+ E I N++ ++S TS GKT+V E I
Sbjct: 117 YVSLENKQ----GKPAKEYKFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAC 172
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
L+ KQ+ I+ P +L ++KY+ + E+
Sbjct: 173 SLRDKQR-VIYTTPIKALSNQKYREFFEEFED 203
>gi|118376256|ref|XP_001021310.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89303077|gb|EAS01065.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 1037
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 12/82 (14%)
Query: 56 AAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
AA+E+ F L+ C+E N++ +++ TS GKT V E I + L+ KQK I+
Sbjct: 125 AAKEYPFKLDHFQRKAVNCIEC--NESVLVAAHTSAGKTAVAEYAIAQSLRDKQK-VIYT 181
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ L K EFK
Sbjct: 182 SPIKALSNQKYRELQK---EFK 200
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ +++ TS GKT V E I + L+ KQK I+ P +L ++KY+ L K EFK
Sbjct: 147 NESVLVAAHTSAGKTAVAEYAIAQSLRDKQK-VIYTSPIKALSNQKYRELQK---EFK 200
>gi|410903506|ref|XP_003965234.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Takifugu
rubripes]
Length = 1034
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 12/94 (12%)
Query: 46 VHEKYQSL----AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMK 97
V+++Y+ L KAA+E+ F L+ E I N++ ++S TS GKT+ E I
Sbjct: 105 VNDQYKPLKPRVGKAAKEYPFILDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIAL 164
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
L+ KQ+ IF P +L ++KY+ + EEF+
Sbjct: 165 ALREKQR-VIFTSPIKALSNQKYREM---YEEFQ 194
>gi|87125389|ref|ZP_01081235.1| putative DNA helicase [Synechococcus sp. RS9917]
gi|86167158|gb|EAQ68419.1| putative DNA helicase [Synechococcus sp. RS9917]
Length = 924
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 57 AEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+ F F L+G LE I Q + V+S PT GKTLVGE I + + +QK + P
Sbjct: 20 AQIFPFPLDGFQLEAIEALNQGHSVVVSAPTGSGKTLVGEYAIYRAIAHRQK-VFYTTPL 78
Query: 113 ISLVHEKYQSL 123
+L ++K +
Sbjct: 79 KALSNQKLRDF 89
>gi|20092019|ref|NP_618094.1| ski2-like helicase [Methanosarcina acetivorans C2A]
gi|24418451|sp|Q8TL39.1|HELS_METAC RecName: Full=Putative ski2-type helicase
gi|19917229|gb|AAM06574.1| helicase [Methanosarcina acetivorans C2A]
Length = 730
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+++ KN + +IPT+ GKTL+ E+ ++K + K A++I+P +L EK++ +E
Sbjct: 36 LLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGK-ALYIVPLRALASEKFRRFQDFSE 92
Score = 39.3 bits (90), Expect = 0.51, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ KN + +IPT+ GKTL+ E+ ++K + K A++I+P +L EK++ +E
Sbjct: 36 LLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGK-ALYIVPLRALASEKFRRFQDFSE 92
>gi|332797784|ref|YP_004459284.1| DEAD/DEAH box helicase [Acidianus hospitalis W1]
gi|332695519|gb|AEE94986.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
Length = 704
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++ K +++ PT GKTL+ E+ I+ L A++I P +L EKY L K EE
Sbjct: 39 LLEGKRLLVTSPTGSGKTLIAELGIISHLLSNGGKAVYITPLKALTAEKYNEL-KDWEEL 97
Query: 131 KF 132
F
Sbjct: 98 GF 99
Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ K +++ PT GKTL+ E+ I+ L A++I P +L EKY L K EE
Sbjct: 39 LLEGKRLLVTSPTGSGKTLIAELGIISHLLSNGGKAVYITPLKALTAEKYNEL-KDWEEL 97
Query: 61 KF 62
F
Sbjct: 98 GF 99
>gi|242009954|ref|XP_002425746.1| helicase, putative [Pediculus humanus corporis]
gi|212509650|gb|EEB13008.1| helicase, putative [Pediculus humanus corporis]
Length = 1011
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 57 AEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+KF L+ E I N++ ++S TS GKT+V E I K L+ KQ+ I+ P
Sbjct: 108 AKEYKFVLDAFQEEAILCIENNQSVLVSAHTSAGKTVVAEYSIAKSLRDKQR-VIYTTPI 166
Query: 113 ISLVHEKYQSLAKAAEEF 130
+L ++K++ EEF
Sbjct: 167 KALSNQKFREF---TEEF 181
>gi|255513991|gb|EET90255.1| DEAD/DEAH box helicase domain protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 708
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56
V++ PT+ GKTLV EI + + + K A+++ P +LV+EK+ +A
Sbjct: 45 VVASPTASGKTLVAEIACVSTILSRGKKAVYVAPMRALVNEKFSEFKEA 93
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126
V++ PT+ GKTLV EI + + + K A+++ P +LV+EK+ +A
Sbjct: 45 VVASPTASGKTLVAEIACVSTILSRGKKAVYVAPMRALVNEKFSEFKEA 93
>gi|313231718|emb|CBY08831.1| unnamed protein product [Oikopleura dioica]
Length = 382
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 56 AAEEFKFYL----EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 111
AA E+KF L E L + +++ ++S TS GKT+V E I L+ KQ+ I+ P
Sbjct: 96 AAREYKFTLDPFQERSVLCLDNHQSVLVSAHTSAGKTVVAEYAISLALRDKQR-VIYTTP 154
Query: 112 YISLVHEKYQSLAKAAEEF 130
+L ++KY+ L EEF
Sbjct: 155 IKALSNQKYRDL---QEEF 170
>gi|417405666|gb|JAA49537.1| Putative cytoplasmic exosomal rna helicase ski2 dead-box
superfamily [Desmodus rotundus]
Length = 1040
Score = 39.3 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ +++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNSQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
>gi|255082724|ref|XP_002504348.1| predicted protein [Micromonas sp. RCC299]
gi|226519616|gb|ACO65606.1| predicted protein [Micromonas sp. RCC299]
Length = 934
Score = 39.3 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK---YQSL 53
+V+ + V+S PT GKTLVGE IM L QK AI+ P +L ++K +Q+L
Sbjct: 17 LVRGDSVVVSAPTGSGKTLVGETAIMTALARGQK-AIYTTPLKALSNQKLREFQAL 71
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK---YQSL 123
+++ + V+S PT GKTLVGE IM L QK AI+ P +L ++K +Q+L
Sbjct: 17 LVRGDSVVVSAPTGSGKTLVGETAIMTALARGQK-AIYTTPLKALSNQKLREFQAL 71
>gi|156102048|ref|XP_001616717.1| DNA-directed DNA polymerase [Plasmodium vivax Sal-1]
gi|148805591|gb|EDL46990.1| DNA-directed DNA polymerase, putative [Plasmodium vivax]
Length = 1030
Score = 39.3 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 65 EGKCLEMI------QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ +CL ++ + ++ + PTSGGKTLV EI +++ +K+ F+ P SL++E
Sbjct: 113 QAECLSLLKTVRWEEGESFLFVAPTSGGKTLVAEIFAFEQMDQTEKT-FFLFPLNSLINE 171
Query: 119 KYQSLAK 125
K L K
Sbjct: 172 KMSYLKK 178
Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
PTSGGKTLV EI +++ +K+ F+ P SL++EK L K
Sbjct: 136 PTSGGKTLVAEIFAFEQMDQTEKT-FFLFPLNSLINEKMSYLKK 178
>gi|261415189|ref|YP_003248872.1| DEAD/DEAH box helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385790131|ref|YP_005821254.1| ATP-dependent RNA helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371645|gb|ACX74390.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326136|gb|ADL25337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 872
Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE++ KN +L+ PT GK++V L L + + +++ P +LV+EK+ +L
Sbjct: 52 EEAILELLDGKNVILNTPTGSGKSMVALALHFDSL-VHNRRSVYTCPIKALVNEKWMALC 110
Query: 125 K 125
K
Sbjct: 111 K 111
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ KN +L+ PT GK++V L L + + +++ P +LV+EK+ +L K
Sbjct: 58 LLDGKNVILNTPTGSGKSMVALALHFDSL-VHNRRSVYTCPIKALVNEKWMALCK 111
>gi|20093551|ref|NP_613398.1| superfamily II helicase [Methanopyrus kandleri AV19]
gi|19886395|gb|AAM01328.1| Predicted Superfamily II helicase [Methanopyrus kandleri AV19]
Length = 711
Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKEL--KIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+ ++N +++ PT+ GKTL+ E+ + EL + ++++P+ +L EKY+ L E
Sbjct: 42 LFDDENLLIAAPTASGKTLLAEMRALHELIESHGETRVVYVVPFRALAREKYEELTNVIE 101
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL--KIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ ++N +++ PT+ GKTL+ E+ + EL + ++++P+ +L EKY+ L E
Sbjct: 42 LFDDENLLIAAPTASGKTLLAEMRALHELIESHGETRVVYVVPFRALAREKYEELTNVIE 101
>gi|229495755|ref|ZP_04389483.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
35406]
gi|229317329|gb|EEN83234.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
35406]
Length = 701
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL-PYISLVHEKYQSLAKAAEE 129
+++ +N VLS PTS GK+L+ + +I + Q S IFI+ P I+L+ E + L+K +
Sbjct: 105 LLRGENVVLSAPTSFGKSLIIDSIIASQ----QHSNIFIIVPTIALIDETRKRLSKFKDS 160
Query: 130 FK 131
+K
Sbjct: 161 YK 162
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL-PYISLVHEKYQSLAKAAEE 59
+++ +N VLS PTS GK+L+ + +I + Q S IFI+ P I+L+ E + L+K +
Sbjct: 105 LLRGENVVLSAPTSFGKSLIIDSIIASQ----QHSNIFIIVPTIALIDETRKRLSKFKDS 160
Query: 60 FK 61
+K
Sbjct: 161 YK 162
>gi|374724165|gb|EHR76245.1| ski2-like helicase [uncultured marine group II euryarchaeote]
Length = 872
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQ--KSAIFILPYISLVHEKYQSLAK 55
N +L+IPT+ GK+LV I I+K + + A++I+P +L EK+ L++
Sbjct: 46 NTLLAIPTASGKSLVAYIGILKRILVDDPGSKAVYIVPLKALASEKFDDLSE 97
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQ--KSAIFILPYISLVHEKYQSLAK 125
N +L+IPT+ GK+LV I I+K + + A++I+P +L EK+ L++
Sbjct: 46 NTLLAIPTASGKSLVAYIGILKRILVDDPGSKAVYIVPLKALASEKFDDLSE 97
>gi|313240235|emb|CBY32582.1| unnamed protein product [Oikopleura dioica]
Length = 382
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 56 AAEEFKFYL----EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 111
AA E+KF L E L + +++ ++S TS GKT+V E I L+ KQ+ I+ P
Sbjct: 96 AAREYKFTLDPFQERSVLCLDNHQSVLVSAHTSAGKTVVAEYAISLALRDKQR-VIYTTP 154
Query: 112 YISLVHEKYQSLAKAAEEF 130
+L ++KY+ L EEF
Sbjct: 155 IKALSNQKYRDL---QEEF 170
>gi|150866387|ref|XP_001385966.2| Dead-box family helicase required for mRNA export from nucleus
[Scheffersomyces stipitis CBS 6054]
gi|149387643|gb|ABN67937.2| Dead-box family helicase required for mRNA export from nucleus
[Scheffersomyces stipitis CBS 6054]
Length = 1068
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
PY+ + K Q K A + F L+ C++ ++++ ++S TS GKT+V E
Sbjct: 129 PYVPIGEHKRQ---KEARTYPFILDPFQDTAISCID--RDESVLVSAHTSAGKTVVAEYA 183
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSL 123
I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 184 IAQSLRDKQR-VIYTSPIKALSNQKYREL 211
>gi|154412364|ref|XP_001579215.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121913419|gb|EAY18229.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 2043
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAEEFKF 132
N+N ++S PT GKT++ + ++K L + S AI+I P SLV E +AK E F
Sbjct: 382 NENLLISAPTGAGKTIIAVLAMIKTLLTENNSKAIYIAPMKSLVQEM---VAKFTEIFDG 438
Query: 133 YLEVLE 138
Y +V+E
Sbjct: 439 YKKVIE 444
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAEEFKF 62
N+N ++S PT GKT++ + ++K L + S AI+I P SLV E +AK E F
Sbjct: 382 NENLLISAPTGAGKTIIAVLAMIKTLLTENNSKAIYIAPMKSLVQEM---VAKFTEIFDG 438
Query: 63 Y-----LEGK---CLEMIQNKNCVLSIPT--------SGGKTLVGEI--LIMKELKIKQK 104
Y L G + +Q + ++S P +G +T + I +I+ E+ +
Sbjct: 439 YKKVIELTGDSSASVSQLQGYDIIVSTPEKLDIISRKTGNQTFIDTIKLVIIDEIHLLHN 498
Query: 105 S 105
S
Sbjct: 499 S 499
>gi|308162866|gb|EFO65235.1| DNA helicase [Giardia lamblia P15]
Length = 898
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 48
++ ++S PTS GK+LV I I++ L + +KSAI +P+++L E
Sbjct: 138 RHILISAPTSAGKSLVAFIYILRCLALCKKSAIVAVPFVALADE 181
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
++ ++S PTS GK+LV I I++ L + +KSAI +P+++L E
Sbjct: 138 RHILISAPTSAGKSLVAFIYILRCLALCKKSAIVAVPFVALADE 181
>gi|373487602|ref|ZP_09578269.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372008677|gb|EHP09302.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 837
Score = 39.3 bits (90), Expect = 0.51, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE+ + KN +L+ PT GK+LV + + L ++S + P +LV+EK+ +L
Sbjct: 39 EQAILEIFEGKNVILNTPTGSGKSLVASAMHFRALAQGRRS-FYTCPIKALVNEKWMALC 97
Query: 125 K 125
+
Sbjct: 98 R 98
>gi|402078073|gb|EJT73422.1| hypothetical protein GGTG_10260 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 2210
Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMI--QNKNCVLSIPTSGGKTLVGEILIMK 97
LP +L + Y +L E F ++ +C + ++N +++ PT GKT+ E +M+
Sbjct: 1356 LPVSALKAKDYAALYPRWEHFN-KIQTQCFNSLYATDQNVLVAAPTGSGKTVCAEFALMR 1414
Query: 98 EL-KIKQKSAIFILPYISLVHEKYQSLAK 125
K + A++I P+ LV+ ++Q K
Sbjct: 1415 LWSKAEHGRAVYIAPFQELVNARFQDWGK 1443
>gi|448683206|ref|ZP_21692180.1| ski2-like helicase [Haloarcula japonica DSM 6131]
gi|445784191|gb|EMA35009.1| ski2-like helicase [Haloarcula japonica DSM 6131]
Length = 800
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V SIPT+ GKTL+ E+ ++ + + +A++I+P +L EK EEF
Sbjct: 37 VTEGENLVASIPTASGKTLIAELAMLSSVA-RGGTALYIVPLRALASEKQADF----EEF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N V SIPT+ GKTL+ E+ ++ + + +A++I+P +L EK EEF+
Sbjct: 39 EGENLVASIPTASGKTLIAELAMLSSVA-RGGTALYIVPLRALASEKQADF----EEFEQ 93
Query: 133 Y 133
Y
Sbjct: 94 Y 94
>gi|21226527|ref|NP_632449.1| ski2-like helicase [Methanosarcina mazei Go1]
gi|24418450|sp|Q8PZR7.1|HELS_METMA RecName: Full=Putative ski2-type helicase
gi|20904797|gb|AAM30121.1| helicase [Methanosarcina mazei Go1]
Length = 730
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEM------------IQNKNCVLSIPTSGGKTLVGEILIM 96
K +SL E +FY LE+ ++ KN + +IPT+ GKTL+ E+ ++
Sbjct: 2 KIESLDLPDEIKRFYENSGILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAML 61
Query: 97 KELKIKQKSAIFILPYISLVHEKYQ 121
K + + A++I+P +L EK++
Sbjct: 62 KSV-LNGGKALYIVPLRALASEKFR 85
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 51
+++ KN + +IPT+ GKTL+ E+ ++K + + A++I+P +L EK++
Sbjct: 36 LLEGKNLLAAIPTASGKTLLAELAMLKSV-LNGGKALYIVPLRALASEKFR 85
>gi|299134433|ref|ZP_07027626.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
gi|298591180|gb|EFI51382.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
Length = 1100
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 23/126 (18%)
Query: 11 IPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLE 70
IPT GG G +++ + +++ PY+ H + A E K YLE
Sbjct: 275 IPTPGGVDDNGWWQVLRRMALQR-------PYLWRNHRE------AIE--KGYLE----- 314
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
Q + +S PT GGK+ + E+ I L ++ + IF+ P +LV + +SL + +++
Sbjct: 315 --QGVSSAISFPTGGGKSTLAELKIATAL-LRGEKVIFLAPTHALVGQTQRSLKRTFQDY 371
Query: 131 KFYLEV 136
K +V
Sbjct: 372 KILADV 377
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
Q + +S PT GGK+ + E+ I L ++ + IF+ P +LV + +SL + +++K
Sbjct: 315 QGVSSAISFPTGGGKSTLAELKIATAL-LRGEKVIFLAPTHALVGQTQRSLKRTFQDYK 372
>gi|435851983|ref|YP_007313569.1| superfamily II helicase [Methanomethylovorans hollandica DSM 15978]
gi|433662613|gb|AGB50039.1| superfamily II helicase [Methanomethylovorans hollandica DSM 15978]
Length = 734
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ KN V +IPT+ GKTL+ E+ ++ + K A++I+P +L EK K
Sbjct: 36 LLEGKNMVAAIPTASGKTLIAELAMLSSIT-KGGKALYIVPLRALASEKMDRFLK 89
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ KN V +IPT+ GKTL+ E+ ++ + K A++I+P +L EK K
Sbjct: 36 LLEGKNMVAAIPTASGKTLIAELAMLSSIT-KGGKALYIVPLRALASEKMDRFLK 89
>gi|291009723|ref|ZP_06567696.1| hypothetical protein SeryN2_34850 [Saccharopolyspora erythraea NRRL
2338]
Length = 1191
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+LS+PTS GKTL+ +ILI L + ++ P SL E Q+L+
Sbjct: 327 LLSVPTSAGKTLLAQILICHHLATQPGDVCYVTPLRSLGREMRQALS 373
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+LS+PTS GKTL+ +ILI L + ++ P SL E Q+L+
Sbjct: 327 LLSVPTSAGKTLLAQILICHHLATQPGDVCYVTPLRSLGREMRQALS 373
>gi|134101608|ref|YP_001107269.1| hypothetical protein SACE_5087 [Saccharopolyspora erythraea NRRL
2338]
gi|133914231|emb|CAM04344.1| hypothetical protein SACE_5087 [Saccharopolyspora erythraea NRRL
2338]
Length = 1025
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+LS+PTS GKTL+ +ILI L + ++ P SL E Q+L+
Sbjct: 161 LLSVPTSAGKTLLAQILICHHLATQPGDVCYVTPLRSLGREMRQALS 207
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+LS+PTS GKTL+ +ILI L + ++ P SL E Q+L+
Sbjct: 161 LLSVPTSAGKTLLAQILICHHLATQPGDVCYVTPLRSLGREMRQALS 207
>gi|389742734|gb|EIM83920.1| antiviral helicase [Stereum hirsutum FP-91666 SS1]
Length = 1030
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 28 ELKIKQKSAIFILP---YISLVHEKYQSLAKAAEEFKFYLEG----KCLEMIQNKNCVLS 80
ELK + + + + P YI + ++ AK A E+KF L+ + +N++ ++S
Sbjct: 60 ELKHQVRHQVAVPPGYNYIPI--SQHVPPAKPAREYKFTLDPFQQVSVYAIQRNESVLVS 117
Query: 81 IPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
TS GKT+V E I + L KQ+ I+ P +L ++KY+ +
Sbjct: 118 AHTSAGKTVVAEYAIAQALANKQR-VIYTSPIKALSNQKYREM 159
>gi|389585726|dbj|GAB68456.1| DNA-directed DNA polymerase [Plasmodium cynomolgi strain B]
Length = 1032
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
PTSGGKTLV EI +++ +K+ F+ P SL++EK L K
Sbjct: 121 PTSGGKTLVAEIFAFEQMDKTEKT-FFLFPLNSLINEKMSYLKK 163
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 82 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
PTSGGKTLV EI +++ +K+ F+ P SL++EK L K
Sbjct: 121 PTSGGKTLVAEIFAFEQMDKTEKT-FFLFPLNSLINEKMSYLKK 163
>gi|397781782|ref|YP_006546255.1| helicase [Methanoculleus bourgensis MS2]
gi|396940284|emb|CCJ37539.1| helicase [Methanoculleus bourgensis MS2]
Length = 712
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 65 EGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ C+E ++ KN +++IPT+ GKTLV E+ + +++ + ++I+P +L EK++
Sbjct: 28 QAACVEAGLLLGKNLLIAIPTASGKTLVAEMAMHHQVE-RGGKCLYIVPLRALASEKFEE 86
Query: 123 LA 124
+
Sbjct: 87 FS 88
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
++ KN +++IPT+ GKTLV E+ + +++ + ++I+P +L EK++ +
Sbjct: 36 LLLGKNLLIAIPTASGKTLVAEMAMHHQVE-RGGKCLYIVPLRALASEKFEEFS 88
>gi|383320892|ref|YP_005381733.1| Superfamily II helicase [Methanocella conradii HZ254]
gi|379322262|gb|AFD01215.1| Superfamily II helicase [Methanocella conradii HZ254]
Length = 730
Score = 39.3 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 44 SLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
S + E Y A+A + K +LEG+ L + +IPT+ GKTL+ E+ ++K +
Sbjct: 19 SGIKELYPPQAEAVK--KGFLEGRSL--------LAAIPTASGKTLLAEMAMLKSISHGG 68
Query: 104 KSAIFILPYISLVHEKYQ 121
K A++I+P +L EK++
Sbjct: 69 K-ALYIVPLKALASEKFE 85
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 51
++ ++ + +IPT+ GKTL+ E+ ++K + K A++I+P +L EK++
Sbjct: 37 LEGRSLLAAIPTASGKTLLAEMAMLKSISHGGK-ALYIVPLKALASEKFE 85
>gi|307208188|gb|EFN85662.1| Superkiller viralicidic activity 2-like 2 [Harpegnathos saltator]
Length = 1001
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
+K A+E+KF L+ E I N++ ++S TS GKT+V E I L+ KQ+ I+
Sbjct: 106 SKPAKEYKFILDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYSIACSLREKQR-VIYT 164
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ EEFK
Sbjct: 165 TPIKALSNQKYREF---YEEFK 183
>gi|336260369|ref|XP_003344980.1| hypothetical protein SMAC_06757 [Sordaria macrospora k-hell]
gi|380095053|emb|CCC07555.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1365
Score = 39.3 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 69 LEMIQ---NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
LEM + +N ++++ T GKT V + I +EL+ K F++P ++L H+++Q L
Sbjct: 71 LEMFEASLRQNIIVAMDTGSGKTQVAVLRIARELEQSDKRIWFLVPTVALAHQQHQVL 128
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+N ++++ T GKT V + I +EL+ K F++P ++L H+++Q L
Sbjct: 80 QNIIVAMDTGSGKTQVAVLRIARELEQSDKRIWFLVPTVALAHQQHQVL 128
>gi|409043841|gb|EKM53323.1| hypothetical protein PHACADRAFT_259600 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1076
Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYL---EGKCLEMIQ-NKNCVLSIPTSGGKTLVGEILIM 96
PYI + + + AK A E+KF L + + IQ N++ ++S TS GKT+V E I
Sbjct: 129 PYIPIAN--HVPPAKPAREYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVVAEYAIA 186
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSL 123
+ L+ KQ+ I+ P +L ++KY+ +
Sbjct: 187 RCLQNKQR-VIYTSPIKALSNQKYREM 212
>gi|84489181|ref|YP_447413.1| helicase [Methanosphaera stadtmanae DSM 3091]
gi|84372500|gb|ABC56770.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
Length = 771
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
N+N +++ PT+ GKTL + ++++L KQ +A++I P +L +++ +SL +E+
Sbjct: 67 NNENVIITTPTASGKTLSFTLPVLEDLTNNKQDTALYIYPTKALANDQLKSLLNIDKEY 125
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
N+N +++ PT+ GKTL + ++++L KQ +A++I P +L +++ +SL +E+
Sbjct: 67 NNENVIITTPTASGKTLSFTLPVLEDLTNNKQDTALYIYPTKALANDQLKSLLNIDKEY 125
>gi|221488822|gb|EEE27036.1| DNA polymerase theta, putative [Toxoplasma gondii GT1]
Length = 1355
Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+ ++ V PTSGGK+LV +++++ K ++I+P++SL EK + L
Sbjct: 547 LTGRSLVYCAPTSGGKSLVADLIMVLRCLFAGKRCMYIVPHVSLCREKSEFL 598
Score = 38.9 bits (89), Expect = 0.71, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ V PTSGGK+LV +++++ K ++I+P++SL EK + L
Sbjct: 550 RSLVYCAPTSGGKSLVADLIMVLRCLFAGKRCMYIVPHVSLCREKSEFL 598
>gi|237837263|ref|XP_002367929.1| DNA polymerase theta, putative [Toxoplasma gondii ME49]
gi|211965593|gb|EEB00789.1| DNA polymerase theta, putative [Toxoplasma gondii ME49]
gi|221509312|gb|EEE34881.1| DNA polymerase theta, putative [Toxoplasma gondii VEG]
Length = 1246
Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+ ++ V PTSGGK+LV +++++ K ++I+P++SL EK + L
Sbjct: 556 LTGRSLVYCAPTSGGKSLVADLIMVLRCLFAGKRCMYIVPHVSLCREKSEFL 607
Score = 38.9 bits (89), Expect = 0.71, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ V PTSGGK+LV +++++ K ++I+P++SL EK + L
Sbjct: 559 RSLVYCAPTSGGKSLVADLIMVLRCLFAGKRCMYIVPHVSLCREKSEFL 607
>gi|194744070|ref|XP_001954518.1| GF18303 [Drosophila ananassae]
gi|190627555|gb|EDV43079.1| GF18303 [Drosophila ananassae]
Length = 2184
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLE-GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE 98
LP SL + Y+S+ K + CL N N +L PT GKT+V EI I +
Sbjct: 1319 LPVSSLKNALYESMYKFTHFNPIQTQIFHCLYHTDN-NVLLGAPTGSGKTIVAEIAIFRA 1377
Query: 99 LKIKQKS-AIFILPYISLVHEKYQSLAKAAEEFKFYLEVLE 138
L KS ++I P +LV E+ + + L+V+E
Sbjct: 1378 LNQNPKSKVVYIAPLKALVKERISDWEQRFQRSSLGLKVVE 1418
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEK 49
+ N +L PT GKT+V EI I + L KS ++I P +LV E+
Sbjct: 1353 DNNVLLGAPTGSGKTIVAEIAIFRALNQNPKSKVVYIAPLKALVKER 1399
>gi|255731826|ref|XP_002550837.1| ATP-dependent RNA helicase DOB1 [Candida tropicalis MYA-3404]
gi|240131846|gb|EER31405.1| ATP-dependent RNA helicase DOB1 [Candida tropicalis MYA-3404]
Length = 1056
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
PYI + K + A+ + F L+ C++ +N++ ++S TS GKT+V E
Sbjct: 115 PYIPIGEHKRKEDART---YPFVLDPFQDTAISCID--RNESVLVSAHTSAGKTVVAEYA 169
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSL 123
I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 170 IAQSLRDKQR-VIYTSPIKALSNQKYREL 197
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+N++ ++S TS GKT+V E I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 148 RNESVLVSAHTSAGKTVVAEYAIAQSLRDKQR-VIYTSPIKALSNQKYREL 197
>gi|157737573|ref|YP_001490256.1| DEAD/DEAH box helicase [Arcobacter butzleri RM4018]
gi|157699427|gb|ABV67587.1| DEAD/DEAH box helicase domain protein [Arcobacter butzleri RM4018]
Length = 679
Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 67 KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+CL +++ N LS PTS GKT + I + +I ++ IF++P ISL++E
Sbjct: 70 ECLNILEENNLFLSAPTSFGKTFIALEFIARN-RILLENIIFVVPTISLMNE 120
>gi|406604929|emb|CCH43602.1| hypothetical protein BN7_3155 [Wickerhamomyces ciferrii]
Length = 1232
Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 55 KAAEEFKFY----LEGKCLEMI--QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS--- 105
KA E FKF ++ K + + + NCV+S PT GKT++ E+ I+K L + +
Sbjct: 110 KAREIFKFQNFNKMQSKSFQTVYHETNNCVISAPTGSGKTVLFELAILKLLNFESDTNNL 169
Query: 106 -AIFILPYISLVHEK 119
++I P SL EK
Sbjct: 170 KILYIAPTKSLCLEK 184
Score = 35.0 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS----AIFILPYISLVHEK 49
+ NCV+S PT GKT++ E+ I+K L + + ++I P SL EK
Sbjct: 134 ETNNCVISAPTGSGKTVLFELAILKLLNFESDTNNLKILYIAPTKSLCLEK 184
>gi|219128713|ref|XP_002184551.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404001|gb|EEC43950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 635
Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+KN V ++P GGK+ V E+ ++ +K + ++PY L + Y S A +F+
Sbjct: 543 SKNVVANLPCGGGKSAVWEVTAYTRHRVGLTRKCTVVVVPYKFLAYNHYHS---AEAKFQ 599
Query: 62 FYLEGKCLEMIQNKN-CVLSIPT 83
L+G C++M+++ C +PT
Sbjct: 600 L-LDGFCVKMLESSAVCSNQVPT 621
>gi|78779944|ref|YP_398056.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
gi|78713443|gb|ABB50620.1| DEAD/DEAH box helicase-like protein [Prochlorococcus marinus str.
MIT 9312]
Length = 908
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 58 EEFKFYLEGKCLEMIQNKNC----VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 113
E F F L+ LE IQ N VL+ PT GKTL+GE I + L + + P
Sbjct: 6 EYFPFPLDDFQLEAIQAINSGNSLVLTAPTGSGKTLIGEFAIYRGLSHDSR-VFYTTPLK 64
Query: 114 SLVHEKYQSLAKAAEEFKFYL 134
+L ++K++ A E K L
Sbjct: 65 ALSNQKFRDFASQYGENKVGL 85
>gi|301623717|ref|XP_002941157.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Xenopus
(Silurana) tropicalis]
Length = 1031
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E I N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 118 VGKAAKEYPFVLDAFQREAILCIDNNQSVLVSAHTSAGKTVCAEYSIALALREKQR-VIF 176
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 177 TSPIKALSNQKYREM---YEEFQ 196
>gi|254443672|ref|ZP_05057148.1| CRISPR-associated helicase Cas3 domain protein [Verrucomicrobiae
bacterium DG1235]
gi|198257980|gb|EDY82288.1| CRISPR-associated helicase Cas3 domain protein [Verrucomicrobiae
bacterium DG1235]
Length = 790
Score = 38.9 bits (89), Expect = 0.71, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 67 KCLEMIQNKNCV--LSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSL 123
+CLE +N + L++PT GGKTL ++ ++ +Q+ I+++P+ S++ + Q
Sbjct: 280 QCLEAAENPVGLFTLTVPTGGGKTLSSLAFALRHAIRHRQRRVIYVIPFTSIIEQNAQVF 339
Query: 124 AK 125
A+
Sbjct: 340 AE 341
>gi|336477283|ref|YP_004616424.1| DEAD/DEAH box helicase [Methanosalsum zhilinae DSM 4017]
gi|335930664|gb|AEH61205.1| DEAD/DEAH box helicase domain protein [Methanosalsum zhilinae DSM
4017]
Length = 739
Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
++ +N V +IPT+ GKTL+ E+ ++K + + K ++I+P +L EKY
Sbjct: 36 LLDGENIVAAIPTASGKTLLAELCMLKSIGMGGK-CLYIVPLKALASEKY 84
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
++ +N V +IPT+ GKTL+ E+ ++K + + K ++I+P +L EKY
Sbjct: 36 LLDGENIVAAIPTASGKTLLAELCMLKSIGMGGK-CLYIVPLKALASEKY 84
>gi|312136909|ref|YP_004004246.1| dead/deah box helicase domain-containing protein [Methanothermus
fervidus DSM 2088]
gi|311224628|gb|ADP77484.1| DEAD/DEAH box helicase domain protein [Methanothermus fervidus
DSM 2088]
Length = 668
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA--IFILPYISLVHEKYQSLAK 55
++KN V+++PT+ GKTL+G I+ LK+ I+++P ISL +EK Q K
Sbjct: 33 KDKNYVIAMPTASGKTLLG---ILAALKVINNGGKVIYLVPLISLQNEKLQEFKK 84
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA--IFILPYISLVHEKYQSLAK 125
++KN V+++PT+ GKTL+G I+ LK+ I+++P ISL +EK Q K
Sbjct: 33 KDKNYVIAMPTASGKTLLG---ILAALKVINNGGKVIYLVPLISLQNEKLQEFKK 84
>gi|224090560|ref|XP_002186759.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Taeniopygia
guttata]
Length = 1035
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
KAA+E+ F L+ E I N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 123 GKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIFT 181
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 182 SPIKALSNQKYREM---YEEFQ 200
>gi|419720549|ref|ZP_14247772.1| DEAD/DEAH box helicase [Lachnoanaerobaculum saburreum F0468]
gi|383303282|gb|EIC94744.1| DEAD/DEAH box helicase [Lachnoanaerobaculum saburreum F0468]
Length = 1116
Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+LSI T L+ LI++ LKI ++ S ILP + V + ++ + FK
Sbjct: 223 LLSIATE--SNLISYWLIVRLLKIILSTFREASLWTILPPLLPVQHRTENYIRLLSGFKP 280
Query: 63 YLE--------GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYI 113
+ L + +N V+++ TSGGKT V EI I+ L K +++ P+
Sbjct: 281 AITELWPSQTIAIPLAVGENSGGVINLRTSGGKTRVAEIAILNTLSKHIMSKTLYLAPFR 340
Query: 114 SLVHEKYQSLAK 125
SL E QSL+K
Sbjct: 341 SLAFEVEQSLSK 352
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAK 55
+N V+++ TSGGKT V EI I+ L K +++ P+ SL E QSL+K
Sbjct: 299 ENSGGVINLRTSGGKTRVAEIAILNTLSKHIMSKTLYLAPFRSLAFEVEQSLSK 352
>gi|344299537|gb|EGW29890.1| hypothetical protein SPAPADRAFT_57398 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1043
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
PY + K K A + F L+ C++ +N++ ++S TS GKT+V E
Sbjct: 103 PYTPIAEHKR---VKEARTYPFVLDPFQDTSISCID--RNESVLVSAHTSAGKTVVAEYA 157
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSL 123
I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 158 IAQSLRDKQR-VIYTSPIKALSNQKYREL 185
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+N++ ++S TS GKT+V E I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 136 RNESVLVSAHTSAGKTVVAEYAIAQSLRDKQR-VIYTSPIKALSNQKYREL 185
>gi|123464703|ref|XP_001317120.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121899846|gb|EAY04897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 774
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHEKYQ 51
KN ++ PT+GGKTL+ E+ + L+ + I + +P+++L EKY
Sbjct: 72 KNAIVLAPTAGGKTLIAEVAFAQALERNPSAKILYCVPFVALATEKYN 119
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHEKYQ 121
KN ++ PT+GGKTL+ E+ + L+ + I + +P+++L EKY
Sbjct: 72 KNAIVLAPTAGGKTLIAEVAFAQALERNPSAKILYCVPFVALATEKYN 119
>gi|348528039|ref|XP_003451526.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Oreochromis niloticus]
Length = 1037
Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 48 EKYQSL----AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKEL 99
E+Y+ L KAA+E+ F L+ E I N++ ++S TS GKT+ E I L
Sbjct: 110 EEYKPLKPRVGKAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALAL 169
Query: 100 KIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
+ KQ+ IF P +L ++KY+ + EEF+
Sbjct: 170 REKQR-VIFTSPIKALSNQKYREM---YEEFQ 197
>gi|237745796|ref|ZP_04576276.1| virulence associated protein [Oxalobacter formigenes HOxBLS]
gi|229377147|gb|EEO27238.1| virulence associated protein [Oxalobacter formigenes HOxBLS]
Length = 1058
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKA 126
E+++ K+ ++ +PTS GKT E++I ++ S AI + P+ +L HE SL +A
Sbjct: 264 EVLKGKSAIVQMPTSAGKTKATELIIRSAFLAERVSLAIIVAPFRALCHEIKNSLVEA 321
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKA 56
+++ K+ ++ +PTS GKT E++I ++ S AI + P+ +L HE SL +A
Sbjct: 265 VLKGKSAIVQMPTSAGKTKATELIIRSAFLAERVSLAIIVAPFRALCHEIKNSLVEA 321
>gi|401565803|ref|ZP_10806621.1| CRISPR-associated helicase Cas3 [Selenomonas sp. FOBRC6]
gi|400185009|gb|EJO19244.1| CRISPR-associated helicase Cas3 [Selenomonas sp. FOBRC6]
Length = 804
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 30 KIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCV--LSIPTSGGK 87
K++QK A F +P+ K + +A +E + CL Q+ + V LS+PT GGK
Sbjct: 233 KLEQKIASFSMPHTP----KEKKIAALRQE----ISDDCLRAAQHPSGVYRLSVPTGGGK 284
Query: 88 TLVGEILIMKELKIKQKSAIF-ILPYISLVHEKYQSL 123
T ++ + QK I ++PY S++ + + +
Sbjct: 285 TFASMRFALRHAQEHQKKRIIVVIPYTSIIDQNVREV 321
>gi|365760859|gb|EHN02546.1| Hfm1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 883
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSLAKA 56
N+NC++S PT GKT++ E+ I++ +K + I+I P SL +E Y++ + +
Sbjct: 58 NENCIISSPTGSGKTVLFELAILRLIKETNNDSNNTKIIYIAPTKSLCYEMYKNWSPS 115
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSLAKA 126
N+NC++S PT GKT++ E+ I++ +K + I+I P SL +E Y++ + +
Sbjct: 58 NENCIISSPTGSGKTVLFELAILRLIKETNNDSNNTKIIYIAPTKSLCYEMYKNWSPS 115
>gi|443685930|gb|ELT89382.1| hypothetical protein CAPTEDRAFT_140857 [Capitella teleta]
Length = 268
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 55 KAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
K A+E+ F L+ CLE N++ ++S TS GKT+V E I L KQ+ I+
Sbjct: 87 KPAKEYPFILDPFQKEALLCLE--NNQSVLVSAHTSAGKTVVAEYAIAMSLAAKQR-VIY 143
Query: 109 ILPYISLVHEKYQSLAKAAEEF 130
P +L ++KY+ L EEF
Sbjct: 144 TTPIKALSNQKYREL---EEEF 162
>gi|282165455|ref|YP_003357840.1| Holliday junction migration helicase [Methanocella paludicola
SANAE]
gi|282157769|dbj|BAI62857.1| Holliday junction migration helicase [Methanocella paludicola
SANAE]
Length = 731
Score = 38.9 bits (89), Expect = 0.78, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 44 SLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
S + E Y A+A + K +L+GK L + +IPT+ GKTL+ E+ ++K +
Sbjct: 19 SGIRELYPPQAEAVK--KGFLDGKSL--------LAAIPTASGKTLLAEMAMLKSIAAGG 68
Query: 104 KSAIFILPYISLVHEKYQ 121
K A++I+P +L EK++
Sbjct: 69 K-ALYIVPLKALASEKFE 85
Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 51
+ K+ + +IPT+ GKTL+ E+ ++K + K A++I+P +L EK++
Sbjct: 37 LDGKSLLAAIPTASGKTLLAEMAMLKSIAAGGK-ALYIVPLKALASEKFE 85
>gi|433777129|ref|YP_007307596.1| superfamily II helicase [Mesorhizobium australicum WSM2073]
gi|433669144|gb|AGB48220.1| superfamily II helicase [Mesorhizobium australicum WSM2073]
Length = 1172
Score = 38.5 bits (88), Expect = 0.79, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
N N V+S+PTS GKT V E+ I++ L K + +F+ P +L + SL K
Sbjct: 322 NGNMVVSLPTSAGKTRVAELCILRALA-KGERVVFVTPLRALSAQTEVSLQK 372
Score = 38.5 bits (88), Expect = 0.79, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
N N V+S+PTS GKT V E+ I++ L K + +F+ P +L + SL K
Sbjct: 322 NGNMVVSLPTSAGKTRVAELCILRALA-KGERVVFVTPLRALSAQTEVSLQK 372
>gi|260811728|ref|XP_002600574.1| hypothetical protein BRAFLDRAFT_205455 [Branchiostoma floridae]
gi|229285861|gb|EEN56586.1| hypothetical protein BRAFLDRAFT_205455 [Branchiostoma floridae]
Length = 961
Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 67 KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126
+CLE N++ ++S TS GKT+V E I L+ KQ+ I+ P +L ++KY+ L
Sbjct: 65 RCLE--SNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQR-VIYTTPIKALSNQKYREL--- 118
Query: 127 AEEFK 131
EEF+
Sbjct: 119 YEEFQ 123
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+V E I L+ KQ+ I+ P +L ++KY+ L EEF+
Sbjct: 70 NQSVLVSAHTSAGKTVVAEYAIAMSLRDKQR-VIYTTPIKALSNQKYREL---YEEFQ 123
>gi|423620995|ref|ZP_17596803.1| CRISPR-associated helicase cas3 [Bacillus cereus VD115]
gi|401245285|gb|EJR51642.1| CRISPR-associated helicase cas3 [Bacillus cereus VD115]
Length = 809
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 64 LEGKCLEMIQNKNCV--LSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKY 120
+ G+C + + + + LSIPT GGKTL +K K+ +K I+++PY +++ +
Sbjct: 255 MSGQCDQFAERPSGIYTLSIPTGGGKTLASLRYALKHAKLHNKKRIIYVVPYTTIIEQNA 314
Query: 121 QSLAKAAEE 129
+ + K E+
Sbjct: 315 EEVRKILED 323
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAAEE 59
LSIPT GGKTL +K K+ +K I+++PY +++ + + + K E+
Sbjct: 271 TLSIPTGGGKTLASLRYALKHAKLHNKKRIIYVVPYTTIIEQNAEEVRKILED 323
>gi|312380113|gb|EFR26198.1| hypothetical protein AND_07887 [Anopheles darlingi]
Length = 1062
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L+ E I N++ ++S TS GKT+V E I K L KQ+ I+ P
Sbjct: 130 AKEYPFVLDPFQREAILCIENNQSVLVSAHTSAGKTVVAEYAIAKSLADKQR-VIYTTPI 188
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++KY+ EEFK
Sbjct: 189 KALSNQKYREF---HEEFK 204
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+V E I K L KQ+ I+ P +L ++KY+ EEFK
Sbjct: 151 NQSVLVSAHTSAGKTVVAEYAIAKSLADKQR-VIYTTPIKALSNQKYREF---HEEFK 204
>gi|195338646|ref|XP_002035935.1| GM16128 [Drosophila sechellia]
gi|194129815|gb|EDW51858.1| GM16128 [Drosophila sechellia]
Length = 1051
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L + + + I N+ VL S TS GKT+V E I K L KQ+ I+ P
Sbjct: 141 AKEYPFVLDPFQRQAILCIDNRQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYTTPI 199
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++K++ EEFK
Sbjct: 200 KALSNQKFREF---TEEFK 215
Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 2 VQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ N+ VL S TS GKT+V E I K L KQ+ I+ P +L ++K++ EEF
Sbjct: 159 IDNRQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYTTPIKALSNQKFREF---TEEF 214
Query: 61 K 61
K
Sbjct: 215 K 215
>gi|422845555|ref|ZP_16892265.1| hypothetical protein HMPREF5505_1932 [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
gi|325684244|gb|EGD26419.1| hypothetical protein HMPREF5505_1932 [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 810
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 9 LSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEK 49
LSIPT GGKTL +K +K K+K I++LPYI+++ +
Sbjct: 275 LSIPTGGGKTLASLRYGLKHAIKTKKKHIIYVLPYITIIEQN 316
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 79 LSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEK 119
LSIPT GGKTL +K +K K+K I++LPYI+++ +
Sbjct: 275 LSIPTGGGKTLASLRYGLKHAIKTKKKHIIYVLPYITIIEQN 316
>gi|363754027|ref|XP_003647229.1| hypothetical protein Ecym_6004 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890866|gb|AET40412.1| hypothetical protein Ecym_6004 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1072
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA----IFILPYISLVHEKYQSLA 54
N NC++S PT GKT++ E+ I+ LK +++ P SL EKYQ
Sbjct: 13 NSNCLISSPTGSGKTVLFELAILNLLKTSNDPKNLKILYMAPTKSLCSEKYQDWG 67
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA----IFILPYISLVHEKYQSLA 124
N NC++S PT GKT++ E+ I+ LK +++ P SL EKYQ
Sbjct: 13 NSNCLISSPTGSGKTVLFELAILNLLKTSNDPKNLKILYMAPTKSLCSEKYQDWG 67
>gi|372488755|ref|YP_005028320.1| superfamily II helicase [Dechlorosoma suillum PS]
gi|359355308|gb|AEV26479.1| superfamily II helicase [Dechlorosoma suillum PS]
Length = 909
Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
V+S PTS GKTLVGEI ++ L++ + AI+++ + +L +KY
Sbjct: 46 VVSAPTSSGKTLVGEIAVLCALRLGIR-AIYLVSHKALADQKY 87
Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
V+S PTS GKTLVGEI ++ L++ + AI+++ + +L +KY
Sbjct: 46 VVSAPTSSGKTLVGEIAVLCALRLGIR-AIYLVSHKALADQKY 87
>gi|378548640|ref|ZP_09823856.1| hypothetical protein CCH26_01075 [Citricoccus sp. CH26A]
Length = 1028
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
C E+ +++ PT GKT+VGE I L QK A + P +L ++KYQ L
Sbjct: 51 CRELEAGNGVLVAAPTGAGKTVVGEFAIHLALAAGQK-AFYTTPIKALSNQKYQDL 105
>gi|303291135|ref|XP_003064854.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453880|gb|EEH51188.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1584
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+I+ V+S PT GKTLVGE+ I+ L ++ + AI+ P +L ++K + K
Sbjct: 294 LIRGDCVVVSAPTGSGKTLVGEVAIVNAL-LRGQKAIYTTPLKALSNQKLREFQK 347
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ V+S PT GKTLVGE+ I+ L ++ + AI+ P +L ++K + K
Sbjct: 294 LIRGDCVVVSAPTGSGKTLVGEVAIVNAL-LRGQKAIYTTPLKALSNQKLREFQK 347
>gi|150399345|ref|YP_001323112.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
vannielii SB]
gi|150012048|gb|ABR54500.1| DEAD/DEAH box helicase domain protein [Methanococcus vannielii SB]
Length = 810
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 37/60 (61%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++ N +++ TS GKTL+GE+ +K L + +F++P ++L ++KY + E++
Sbjct: 217 LLKGDNLLITSATSSGKTLIGELAGIKNLSENKGKFLFLVPLVALANQKYIEFKEKYEKY 276
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 37/60 (61%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ N +++ TS GKTL+GE+ +K L + +F++P ++L ++KY + E++
Sbjct: 217 LLKGDNLLITSATSSGKTLIGELAGIKNLSENKGKFLFLVPLVALANQKYIEFKEKYEKY 276
>gi|448664116|ref|ZP_21683919.1| ski2-like helicase [Haloarcula amylolytica JCM 13557]
gi|445774761|gb|EMA25775.1| ski2-like helicase [Haloarcula amylolytica JCM 13557]
Length = 800
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF
Sbjct: 37 VTEGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF+
Sbjct: 39 EGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEFEQ 93
Query: 133 Y 133
Y
Sbjct: 94 Y 94
>gi|448648795|ref|ZP_21679860.1| ski2-like helicase [Haloarcula californiae ATCC 33799]
gi|445774539|gb|EMA25555.1| ski2-like helicase [Haloarcula californiae ATCC 33799]
Length = 798
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF
Sbjct: 37 VTEGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF+
Sbjct: 39 EGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEFEQ 93
Query: 133 Y 133
Y
Sbjct: 94 Y 94
>gi|448679825|ref|ZP_21690370.1| ski2-like helicase [Haloarcula argentinensis DSM 12282]
gi|445769984|gb|EMA21053.1| ski2-like helicase [Haloarcula argentinensis DSM 12282]
Length = 800
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF
Sbjct: 37 VTEGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF+
Sbjct: 39 EGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEFEQ 93
Query: 133 Y 133
Y
Sbjct: 94 Y 94
>gi|448638861|ref|ZP_21676531.1| ski2-like helicase [Haloarcula sinaiiensis ATCC 33800]
gi|445763193|gb|EMA14396.1| ski2-like helicase [Haloarcula sinaiiensis ATCC 33800]
Length = 798
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF
Sbjct: 37 VTEGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF+
Sbjct: 39 EGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEFEQ 93
Query: 133 Y 133
Y
Sbjct: 94 Y 94
>gi|448628614|ref|ZP_21672383.1| ski2-like helicase [Haloarcula vallismortis ATCC 29715]
gi|445758145|gb|EMA09470.1| ski2-like helicase [Haloarcula vallismortis ATCC 29715]
Length = 800
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF
Sbjct: 37 VTEGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF+
Sbjct: 39 EGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEFEQ 93
Query: 133 Y 133
Y
Sbjct: 94 Y 94
>gi|55379480|ref|YP_137330.1| ski2-like helicase [Haloarcula marismortui ATCC 43049]
gi|68052079|sp|Q5UYM9.1|HELS_HALMA RecName: Full=Putative ski2-type helicase
gi|55232205|gb|AAV47624.1| putative ski2-type helicase [Haloarcula marismortui ATCC 43049]
Length = 799
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF
Sbjct: 37 VTEGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF+
Sbjct: 39 EGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEFEQ 93
Query: 133 Y 133
Y
Sbjct: 94 Y 94
>gi|344210446|ref|YP_004794766.1| ski2-like helicase [Haloarcula hispanica ATCC 33960]
gi|343781801|gb|AEM55778.1| ski2-like helicase [Haloarcula hispanica ATCC 33960]
Length = 800
Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF
Sbjct: 37 VTEGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF+
Sbjct: 39 EGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEFEQ 93
Query: 133 Y 133
Y
Sbjct: 94 Y 94
>gi|47550803|ref|NP_999933.1| superkiller viralicidic activity 2-like 2 [Danio rerio]
gi|38494342|gb|AAH61456.1| Superkiller viralicidic activity 2-like 2 [Danio rerio]
Length = 1034
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 12/93 (12%)
Query: 47 HEKYQSL----AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKE 98
+E+Y L KAA+E+ F L+ E I N++ ++S TS GKT+ E I
Sbjct: 107 NEEYTPLKPRVGKAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALA 166
Query: 99 LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
L+ KQ+ IF P +L ++KY+ + EEF+
Sbjct: 167 LREKQR-VIFTSPIKALSNQKYREM---YEEFQ 195
>gi|403220959|dbj|BAM39092.1| DEAD-box helicase [Theileria orientalis strain Shintoku]
Length = 1755
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAK------- 55
+++ V++ PT GKTLV E+ + + + + A+++ P +L HE+Y+ A+
Sbjct: 969 DESLVVAAPTGSGKTLVAELALFRLFERHADAVAVYVAPLKALAHERYKDWARKFHFKRV 1028
Query: 56 ---AAEEFKFYLEGKCLEMIQNKNCVLSIP 82
+E L+G + ++N N +++ P
Sbjct: 1029 LQLTGDESLPTLQGPARDDLENYNIIITTP 1058
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAK 125
+++ V++ PT GKTLV E+ + + + + A+++ P +L HE+Y+ A+
Sbjct: 969 DESLVVAAPTGSGKTLVAELALFRLFERHADAVAVYVAPLKALAHERYKDWAR 1021
>gi|298711426|emb|CBJ32567.1| Superkiller viralicidic activity 2-like 2 (ATP-dependent helicase
SKIV2L2) conserved hypothetical pr [Ectocarpus
siliculosus]
Length = 1034
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 50 YQSLAKAAEEFKFYL---EGKCLEMIQ-NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS 105
Y+ K A+E+ F L + + +E I+ N++ ++S TS GKT+ E I K L+ KQ+
Sbjct: 99 YRPAPKPAKEYPFTLDPFQKQAIEYIERNESVLVSAHTSAGKTVNAEYAIAKCLRDKQR- 157
Query: 106 AIFILPYISLVHEKYQSLAKAAEEF 130
I+ P +L ++K++ L EEF
Sbjct: 158 VIYTSPIKALSNQKFRDL---QEEF 179
>gi|341881947|gb|EGT37882.1| CBN-MTR-4 protein [Caenorhabditis brenneri]
Length = 1020
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEI 93
+P S+ E +S A+ A+ + F L+ C+E N++ ++S TS GKT+V
Sbjct: 96 IPPKSVFTELKKSNAEPAKYYPFQLDAFQKQAILCIE--NNQSVLVSAHTSAGKTVVATY 153
Query: 94 LIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
I + L+ KQ+ I+ P +L ++KY+ L EEFK
Sbjct: 154 AIAQCLREKQR-VIYTSPIKALSNQKYREL---EEEFK 187
>gi|341894795|gb|EGT50730.1| hypothetical protein CAEBREN_32645 [Caenorhabditis brenneri]
Length = 1023
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEI 93
+P S+ E +S A+ A+ + F L+ C+E N++ ++S TS GKT+V
Sbjct: 96 IPPKSVFTELKKSNAEPAKYYPFQLDAFQKQAILCIE--NNQSVLVSAHTSAGKTVVATY 153
Query: 94 LIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
I + L+ KQ+ I+ P +L ++KY+ L EEFK
Sbjct: 154 AIAQCLREKQR-VIYTSPIKALSNQKYREL---EEEFK 187
>gi|367013882|ref|XP_003681441.1| hypothetical protein TDEL_0D06460 [Torulaspora delbrueckii]
gi|359749101|emb|CCE92230.1| hypothetical protein TDEL_0D06460 [Torulaspora delbrueckii]
Length = 1150
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 5/54 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQS 52
++NCV+S PT GKT++ E+ IM+ ++ +SA ++I P SL EK+++
Sbjct: 150 DENCVVSSPTGSGKTVLFELAIMRLMRNLNQSAENIKILYIAPTKSLCCEKFKN 203
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 5/54 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQS 122
++NCV+S PT GKT++ E+ IM+ ++ +SA ++I P SL EK+++
Sbjct: 150 DENCVVSSPTGSGKTVLFELAIMRLMRNLNQSAENIKILYIAPTKSLCCEKFKN 203
>gi|15920808|ref|NP_376477.1| helicase [Sulfolobus tokodaii str. 7]
gi|24418452|sp|Q974S1.1|HELS_SULTO RecName: Full=Putative ski2-type helicase
gi|342306252|dbj|BAK54341.1| Holliday junction migration helicase [Sulfolobus tokodaii str. 7]
Length = 704
Score = 38.5 bits (88), Expect = 0.93, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
++ K +++ PT+ GKTL+ E+ ++ L K AI+I P +L +EKY +
Sbjct: 39 LLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNEKYNTF 91
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ K +++ PT+ GKTL+ E+ ++ L K AI+I P +L +EKY +
Sbjct: 39 LLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNEKYNTF 91
>gi|126462790|ref|YP_001043904.1| helicase domain-containing protein [Rhodobacter sphaeroides ATCC
17029]
gi|126104454|gb|ABN77132.1| helicase domain protein [Rhodobacter sphaeroides ATCC 17029]
Length = 711
Score = 38.5 bits (88), Expect = 0.93, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 18/85 (21%)
Query: 59 EFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYIS 114
+ KFYL K +E +++ +N LS PTS GK+L+ + I + + + I+P I+
Sbjct: 101 QHKFYLHAKQVEVLVHLLKGENVALSAPTSFGKSLLLDAFIERA---NPSTVVVIVPTIA 157
Query: 115 LVHE-----------KYQSLAKAAE 128
L+ E +YQ ++KA++
Sbjct: 158 LIDETRRRLQGNFGSRYQVISKASD 182
>gi|330508264|ref|YP_004384692.1| putative Ski2-type helicase [Methanosaeta concilii GP6]
gi|328929072|gb|AEB68874.1| putative Ski2-type helicase [Methanosaeta concilii GP6]
Length = 769
Score = 38.5 bits (88), Expect = 0.94, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ KN +L++ T+ GKT + E+ ++K ++ K +++I+P +L EK+ S +
Sbjct: 39 LLEGKNMLLALATASGKTFLAELAMLKA-ALQSKRSLYIVPLRALAAEKFDSFQR 92
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ KN +L++ T+ GKT + E+ ++K ++ K +++I+P +L EK+ S +
Sbjct: 39 LLEGKNMLLALATASGKTFLAELAMLKA-ALQSKRSLYIVPLRALAAEKFDSFQR 92
>gi|68062480|ref|XP_673247.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490959|emb|CAH94844.1| hypothetical protein PB000885.00.0 [Plasmodium berghei]
Length = 464
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++N +L PT GKT++GE+ I++ LK + +++I P ++V+E+ +FK
Sbjct: 18 DENILLGAPTGSGKTVIGELCILRNLLKYEDHRSVYICPMKAIVNER---CIAWKNKFKT 74
Query: 63 YLEGKCLEMIQNKN 76
+E+ +KN
Sbjct: 75 LFNKNVIELTGDKN 88
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEK 119
++N +L PT GKT++GE+ I++ LK + +++I P ++V+E+
Sbjct: 18 DENILLGAPTGSGKTVIGELCILRNLLKYEDHRSVYICPMKAIVNER 64
>gi|359144147|ref|ZP_09178216.1| helicase [Streptomyces sp. S4]
Length = 935
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 52 SLAKAAEEFKFYLE----GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
+LA E + F L+ C + + K +++ PT GKT+VGE + L + K
Sbjct: 24 ALASFREMYDFGLDPFQLDACRSLEEGKGVLVAAPTGSGKTIVGEFAVHLALG-QSKKCF 82
Query: 108 FILPYISLVHEKYQSLAK 125
+ P +L ++KY LAK
Sbjct: 83 YTTPIKALSNQKYADLAK 100
Score = 35.0 bits (79), Expect = 9.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ K +++ PT GKT+VGE + L + K + P +L ++KY LAK
Sbjct: 49 EGKGVLVAAPTGSGKTIVGEFAVHLALG-QSKKCFYTTPIKALSNQKYADLAK 100
>gi|291450457|ref|ZP_06589847.1| helicase [Streptomyces albus J1074]
gi|421740794|ref|ZP_16179025.1| superfamily II RNA helicase [Streptomyces sp. SM8]
gi|291353406|gb|EFE80308.1| helicase [Streptomyces albus J1074]
gi|406690789|gb|EKC94579.1| superfamily II RNA helicase [Streptomyces sp. SM8]
Length = 935
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 52 SLAKAAEEFKFYLE----GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
+LA E + F L+ C + + K +++ PT GKT+VGE + L + K
Sbjct: 24 ALASFREMYDFGLDPFQLDACRSLEEGKGVLVAAPTGSGKTIVGEFAVHLALG-QSKKCF 82
Query: 108 FILPYISLVHEKYQSLAK 125
+ P +L ++KY LAK
Sbjct: 83 YTTPIKALSNQKYADLAK 100
Score = 35.0 bits (79), Expect = 9.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ K +++ PT GKT+VGE + L + K + P +L ++KY LAK
Sbjct: 49 EGKGVLVAAPTGSGKTIVGEFAVHLALG-QSKKCFYTTPIKALSNQKYADLAK 100
>gi|408410429|ref|ZP_11181646.1| CRISPR-associated helicase cas3 [Lactobacillus sp. 66c]
gi|407875423|emb|CCK83452.1| CRISPR-associated helicase cas3 [Lactobacillus sp. 66c]
Length = 817
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 9 LSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEK 49
LSIPT GGKTL +K +KQK I++LPYI+++ +
Sbjct: 275 LSIPTGGGKTLTSLRYALKHAVLKQKKRIIYVLPYITIIEQN 316
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 79 LSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEK 119
LSIPT GGKTL +K +KQK I++LPYI+++ +
Sbjct: 275 LSIPTGGGKTLTSLRYALKHAVLKQKKRIIYVLPYITIIEQN 316
>gi|326329698|ref|ZP_08196019.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
Broad-1]
gi|325952463|gb|EGD44482.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
Broad-1]
Length = 926
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
C E+ K +++ PT GKT+VGE I L +K A + P +L ++KY L K
Sbjct: 40 CKEIEDGKGVLVAAPTGSGKTIVGEFAIHLALATGRK-AFYTTPIKALSNQKYNDLVK 96
>gi|156096130|ref|XP_001614099.1| helicase [Plasmodium vivax Sal-1]
gi|148802973|gb|EDL44372.1| helicase, putative [Plasmodium vivax]
Length = 972
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
KN + +IPT GKT++ +I I++ + K AI LP +SL++EK
Sbjct: 260 KNFLFNIPTGMGKTIIYDIQIIRLVLYKGYRAILTLPTVSLINEK 304
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
KN + +IPT GKT++ +I I++ + K AI LP +SL++EK
Sbjct: 260 KNFLFNIPTGMGKTIIYDIQIIRLVLYKGYRAILTLPTVSLINEK 304
>gi|449545648|gb|EMD36619.1| hypothetical protein CERSUDRAFT_66166 [Ceriporiopsis subvermispora
B]
Length = 993
Score = 38.5 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYL---EGKCLEMIQ-NKNCVLSIPTSGGKTLVGEILIM 96
PYI + + + AK A E+KF L + + IQ N++ ++S TS GKT+V E I
Sbjct: 46 PYIPIAN--HVPPAKPAREYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVVAEYAIA 103
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSL 123
+ L+ KQ+ I+ P +L ++KY+ +
Sbjct: 104 QCLQNKQR-VIYTSPIKALSNQKYREM 129
>gi|126180439|ref|YP_001048404.1| ski2-like helicase [Methanoculleus marisnigri JR1]
gi|125863233|gb|ABN58422.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
JR1]
Length = 712
Score = 38.5 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 65 EGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ C+E + KN +++IPT+ GKTLV E+ + ++ + ++I+P +L EK++
Sbjct: 28 QAACVEAGLFSGKNLLVAIPTASGKTLVAEMAMHHQVA-RGGKCLYIVPLRALASEKFEE 86
Query: 123 LA 124
+
Sbjct: 87 FS 88
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+ KN +++IPT+ GKTLV E+ + ++ + ++I+P +L EK++ +
Sbjct: 36 LFSGKNLLVAIPTASGKTLVAEMAMHHQVA-RGGKCLYIVPLRALASEKFEEFS 88
>gi|205372131|ref|ZP_03224947.1| DEAD/DEAH box helicase-like protein [Bacillus coahuilensis m4-4]
Length = 1114
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAK 125
++++K V+S+PTS GKT + E I+ L K + +++ P+ SL +E S++K
Sbjct: 288 VLEDKGAVISLPTSAGKTRIAEFAILDCLVKGSENKILYLAPFRSLAYEVEDSISK 343
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAK 55
++++K V+S+PTS GKT + E I+ L K + +++ P+ SL +E S++K
Sbjct: 288 VLEDKGAVISLPTSAGKTRIAEFAILDCLVKGSENKILYLAPFRSLAYEVEDSISK 343
>gi|401407743|ref|XP_003883320.1| putative DNA polymerase theta [Neospora caninum Liverpool]
gi|325117737|emb|CBZ53288.1| putative DNA polymerase theta [Neospora caninum Liverpool]
Length = 2518
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ ++ V PTSGGK+LV +++++ K ++I+P++SL EK
Sbjct: 469 LTGRSLVYCAPTSGGKSLVADLIMVLRCLFAGKRCMYIVPHVSLCREK 516
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ V PTSGGK+LV +++++ K ++I+P++SL EK
Sbjct: 472 RSLVYCAPTSGGKSLVADLIMVLRCLFAGKRCMYIVPHVSLCREK 516
>gi|443713660|gb|ELU06394.1| hypothetical protein CAPTEDRAFT_155216 [Capitella teleta]
Length = 925
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 55 KAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
K A+E+ F L+ CLE N++ ++S TS GKT+V E I L KQ+ I+
Sbjct: 36 KPAKEYPFILDPFQKEALLCLE--NNQSVLVSAHTSAGKTVVAEYAIAMSLAAKQR-VIY 92
Query: 109 ILPYISLVHEKYQSLAKAAEEF 130
P +L ++KY+ L EEF
Sbjct: 93 TTPIKALSNQKYREL---EEEF 111
>gi|427711200|ref|YP_007059824.1| superfamily II RNA helicase [Synechococcus sp. PCC 6312]
gi|427375329|gb|AFY59281.1| superfamily II RNA helicase [Synechococcus sp. PCC 6312]
Length = 896
Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 60 FKFYLEGKCLEMIQ--NKNC--VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
F F L+ L+ I+ N+NC V+ PT GKTLVGE +I + L +Q+ + P +L
Sbjct: 15 FPFPLDNFQLQAIEALNQNCSVVVCAPTGSGKTLVGEYVIHRALA-RQRRVFYTTPLKAL 73
Query: 116 VHEKYQSL 123
++K +
Sbjct: 74 SNQKLRDF 81
>gi|385803030|ref|YP_005839430.1| ATP-dependent DNA helicase Hel308 [Haloquadratum walsbyi C23]
gi|339728522|emb|CCC39675.1| ATP-dependent DNA helicase Hel308 [Haloquadratum walsbyi C23]
Length = 696
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+V +N +++IPT+ GKTL+ ++ ++ A++I+P +L EKY++
Sbjct: 59 VVDGENVIVAIPTAAGKTLIAQLAMLT----ADGPALYIVPLRALAREKYETF 107
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
++ +N +++IPT+ GKTL+ ++ ++ A++I+P +L EKY++
Sbjct: 59 VVDGENVIVAIPTAAGKTLIAQLAMLT----ADGPALYIVPLRALAREKYETF 107
>gi|110667590|ref|YP_657401.1| ATP-dependent DNA helicase [Haloquadratum walsbyi DSM 16790]
gi|109625337|emb|CAJ51759.1| ATP-dependent DNA helicase Hel308 [Haloquadratum walsbyi DSM 16790]
Length = 696
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+V +N +++IPT+ GKTL+ ++ ++ A++I+P +L EKY++
Sbjct: 59 VVDGENVIVAIPTAAGKTLIAQLAMLT----ADGPALYIVPLRALAREKYETF 107
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
++ +N +++IPT+ GKTL+ ++ ++ A++I+P +L EKY++
Sbjct: 59 VVDGENVIVAIPTAAGKTLIAQLAMLT----ADGPALYIVPLRALAREKYETF 107
>gi|422418615|ref|ZP_16495570.1| dead/deah box helicase domain-containing protein, partial [Listeria
seeligeri FSL N1-067]
gi|313633816|gb|EFS00549.1| dead/deah box helicase domain-containing protein [Listeria
seeligeri FSL N1-067]
Length = 539
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 67 KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
KCLE++Q N +S PTS GKT + + +K K +F++P I+L++E
Sbjct: 74 KCLELLQKGNLFISAPTSFGKTFIA-LEYIKRNSSKIDDVVFVVPTIALMNE 124
>gi|330834721|ref|YP_004409449.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
cuprina Ar-4]
gi|329566860|gb|AEB94965.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
cuprina Ar-4]
Length = 700
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+++ K +L+ PT GKTL+ E+ ++ L K A+++ P +L EKY +
Sbjct: 39 LLEGKRMLLTSPTGSGKTLIAELGMISHLLKGGKRAVYVTPLRALTAEKYSTFG 92
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+++ K +L+ PT GKTL+ E+ ++ L K A+++ P +L EKY +
Sbjct: 39 LLEGKRMLLTSPTGSGKTLIAELGMISHLLKGGKRAVYVTPLRALTAEKYSTFG 92
>gi|327262837|ref|XP_003216230.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Anolis
carolinensis]
Length = 1039
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 54 AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
KAA+E+ F L+ E I N + ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 GKAAKEYPFILDAFQREAILCVDNNHSVLVSAHTSAGKTVCAEYAIALALREKQR-VIFT 185
Query: 110 LPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 SPIKALSNQKYREM---YEEFQ 204
>gi|87122058|ref|ZP_01077942.1| SKI2-family helicase [Marinomonas sp. MED121]
gi|86162605|gb|EAQ63886.1| SKI2-family helicase [Marinomonas sp. MED121]
Length = 973
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 9 LSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 48
+ +PTS GKT + EI+I E+K++ +F++P+ +L E
Sbjct: 250 MQMPTSAGKTSLCEIIIFNEVKVRGNKVLFLVPFRALAAE 289
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 79 LSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
+ +PTS GKT + EI+I E+K++ +F++P+ +L E
Sbjct: 250 MQMPTSAGKTSLCEIIIFNEVKVRGNKVLFLVPFRALAAE 289
>gi|321468914|gb|EFX79897.1| hypothetical protein DAPPUDRAFT_304340 [Daphnia pulex]
Length = 1034
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYLEGKCLEMI---QNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L+ E I QN VL S TS GKT+V E I LK KQ+ I+ P
Sbjct: 119 AKEYPFVLDPFQKEAILCLQNSQSVLVSAHTSAGKTVVAEYAIAMSLKEKQR-VIYTTPI 177
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++KY+ +EEFK
Sbjct: 178 KALSNQKYREF---SEEFK 193
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 2 VQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+QN VL S TS GKT+V E I LK KQ+ I+ P +L ++KY+ +EEF
Sbjct: 137 LQNSQSVLVSAHTSAGKTVVAEYAIAMSLKEKQR-VIYTTPIKALSNQKYREF---SEEF 192
Query: 61 K 61
K
Sbjct: 193 K 193
>gi|116754533|ref|YP_843651.1| DEAD/DEAH box helicase domain-containing protein [Methanosaeta
thermophila PT]
gi|116665984|gb|ABK15011.1| DEAD/DEAH box helicase domain protein [Methanosaeta thermophila PT]
Length = 820
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 38/58 (65%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+++ K+ ++ T+ GK+L+GEI +K L + +F++P ++L ++K++ L+ +E
Sbjct: 222 LLEGKSLLVVSATATGKSLIGEIAGIKNLIEGRGKLLFLVPLVALANQKFEQLSAYSE 279
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 38/58 (65%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ K+ ++ T+ GK+L+GEI +K L + +F++P ++L ++K++ L+ +E
Sbjct: 222 LLEGKSLLVVSATATGKSLIGEIAGIKNLIEGRGKLLFLVPLVALANQKFEQLSAYSE 279
>gi|50307187|ref|XP_453572.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642706|emb|CAH00668.1| KLLA0D11462p [Kluyveromyces lactis]
Length = 1087
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAI---FILPYISLVHEKYQ 51
N+NC+++ PT GKT++ E+ I+ + ++ + S++ +I P SL +EKYQ
Sbjct: 83 NENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQ 134
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAI---FILPYISLVHEKYQ 121
N+NC+++ PT GKT++ E+ I+ + ++ + S++ +I P SL +EKYQ
Sbjct: 83 NENCIVTSPTGSGKTVLFELAILNAMNRLDRPSSVKVLYIAPTKSLCNEKYQ 134
>gi|171914445|ref|ZP_02929915.1| Putative ATP-dependent helicase [Verrucomicrobium spinosum DSM
4136]
Length = 851
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
++ V EK L A EE L + + +N +L+ PT GK+LV L L
Sbjct: 25 FLDYVAEKKLELYPAQEE-------AVLALFEGQNVILNTPTGSGKSLVATALHFLSLA- 76
Query: 102 KQKSAIFILPYISLVHEKYQSLAK 125
+ + +++ P +LV+EK+ +L +
Sbjct: 77 RGRRSVYTCPIKALVNEKFLALCR 100
>gi|162452640|ref|YP_001615007.1| ATP-dependent helicase [Sorangium cellulosum So ce56]
gi|161163222|emb|CAN94527.1| Putative ATP-dependent helicase [Sorangium cellulosum So ce56]
Length = 867
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
++ V E+ L A EE LE+ KN +L+ PT GK+LV + K L
Sbjct: 36 FLDYVAERGLELYPAQEE-------AILEIFGGKNVILNTPTGSGKSLVAAAMHFKALAE 88
Query: 102 KQKSAIFILPYISLVHEKYQSL 123
KS + P +LV EK+ SL
Sbjct: 89 GMKS-YYTCPIKALVSEKFFSL 109
>gi|297618758|ref|YP_003706863.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
voltae A3]
gi|297377735|gb|ADI35890.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3]
Length = 878
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQ-----------KSAIFILPYISLVHEKYQ 51
++KN ++SIPT+ GKTL+GE+ + + K A+FI+P +L EK+
Sbjct: 33 KDKNFIISIPTASGKTLIGEMAFINHVLENSPKNELGYIPSGKKALFIVPLKALATEKFD 92
Query: 52 SLAKAAEEF 60
+ +F
Sbjct: 93 EFREKYNKF 101
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQ-----------KSAIFILPYISLVHEKYQ 121
++KN ++SIPT+ GKTL+GE+ + + K A+FI+P +L EK+
Sbjct: 33 KDKNFIISIPTASGKTLIGEMAFINHVLENSPKNELGYIPSGKKALFIVPLKALATEKFD 92
Query: 122 SLAKAAEEF 130
+ +F
Sbjct: 93 EFREKYNKF 101
>gi|398788653|ref|ZP_10550789.1| ATP-dependent RNA helicase [Streptomyces auratus AGR0001]
gi|396991972|gb|EJJ03091.1| ATP-dependent RNA helicase [Streptomyces auratus AGR0001]
Length = 938
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 48 EKYQSLAKAAEEFKFYLE----GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
E+ +LA E + F L+ C + K +++ PT GKT+VGE + L+ +
Sbjct: 20 EQATALAPFREMYDFGLDPFQVEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALE-QG 78
Query: 104 KSAIFILPYISLVHEKYQSLAK 125
+ + P +L ++KYQ L K
Sbjct: 79 RKCFYTTPIKALSNQKYQDLVK 100
>gi|150400529|ref|YP_001324295.1| DEAD/DEAH box helicase [Methanococcus aeolicus Nankai-3]
gi|150013232|gb|ABR55683.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
Nankai-3]
Length = 1265
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 8 VLSIPTSGGKTLVGEILIMKEL--KIKQ---KSAIFILPYISLVHEKYQSLAKAAEEF 60
++ IPT+ GKTL+GE+ + L + KQ K +FI+P +L +EKY + E++
Sbjct: 50 LICIPTASGKTLIGEMAFINHLLDENKQPTGKKGLFIVPLKALANEKYDEFKEKYEKY 107
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 VLSIPTSGGKTLVGEILIMKEL--KIKQ---KSAIFILPYISLVHEKYQSLAKAAEEF 130
++ IPT+ GKTL+GE+ + L + KQ K +FI+P +L +EKY + E++
Sbjct: 50 LICIPTASGKTLIGEMAFINHLLDENKQPTGKKGLFIVPLKALANEKYDEFKEKYEKY 107
>gi|333911542|ref|YP_004485275.1| DEAD/DEAH box helicase [Methanotorris igneus Kol 5]
gi|333752131|gb|AEF97210.1| DEAD/DEAH box helicase domain protein [Methanotorris igneus Kol 5]
Length = 801
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+++NK+ ++ TS GKTL+GE+ +K L + +F++P ++L ++KY
Sbjct: 213 LLENKDLLIMSATSSGKTLIGELAGIKNLLEGKGKFLFLVPLVALANQKY 262
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+++NK+ ++ TS GKTL+GE+ +K L + +F++P ++L ++KY
Sbjct: 213 LLENKDLLIMSATSSGKTLIGELAGIKNLLEGKGKFLFLVPLVALANQKY 262
>gi|70931345|ref|XP_737373.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56512708|emb|CAH84052.1| hypothetical protein PC300835.00.0 [Plasmodium chabaudi chabaudi]
Length = 274
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++N +L PT GKT++GE+ I++ LK + + +++I P ++V+E+ +FK
Sbjct: 128 DENILLGAPTGSGKTVIGELCILRNLLKHEDQRSVYICPMKAIVNER---CIAWKNKFKT 184
Query: 63 YLEGKCLEMIQNKN 76
+E+ +KN
Sbjct: 185 LFNKNVIELTGDKN 198
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEK 119
++N +L PT GKT++GE+ I++ LK + + +++I P ++V+E+
Sbjct: 128 DENILLGAPTGSGKTVIGELCILRNLLKHEDQRSVYICPMKAIVNER 174
>gi|427704263|ref|YP_007047485.1| superfamily II RNA helicase [Cyanobium gracile PCC 6307]
gi|427347431|gb|AFY30144.1| superfamily II RNA helicase [Cyanobium gracile PCC 6307]
Length = 943
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 60 FKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
F F L+G LE I Q + V+S PT GKTLVGE I + L QK + P +L
Sbjct: 38 FPFPLDGFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYAIHRALAHGQK-VFYTTPLKAL 96
Query: 116 VHEKYQSL 123
++K +
Sbjct: 97 SNQKLRDF 104
>gi|50419435|ref|XP_458244.1| DEHA2C13068p [Debaryomyces hansenii CBS767]
gi|49653910|emb|CAG86320.1| DEHA2C13068p [Debaryomyces hansenii CBS767]
Length = 1062
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
PY+ + K Q+ A+ + F L+ C++ ++++ ++S TS GKT+V E
Sbjct: 121 PYVPIGEHKRQNEART---YPFVLDPFQDTAISCID--RSESVLVSAHTSAGKTVVAEYA 175
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSL 123
I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 176 IAQSLREKQR-VIYTSPIKALSNQKYREL 203
>gi|291536633|emb|CBL09745.1| Fibronectin type III domain [Roseburia intestinalis M50/1]
Length = 393
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGK 67
V+++ ++ K GE + + + + S +++ Y +++HE Y SL A EEF Y +
Sbjct: 41 VMAVGSTNIKVPTGEYSNVVQFSLNKPSYVYVSAYSTVMHEDYDSLG-AIEEFAVYSDAN 99
Query: 68 CLEMI 72
C ++
Sbjct: 100 CSNLV 104
>gi|336366009|gb|EGN94357.1| hypothetical protein SERLA73DRAFT_62726 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1066
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYL---EGKCLEMIQ-NKNCVLSIPTSGGKTLVGEILIM 96
PY + K+ +K A E+KF L + + IQ N++ ++S TS GKT+V E I
Sbjct: 122 PYTPI--SKHVPPSKPAREYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVVAEYAIA 179
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSL 123
+ L+ KQ+ I+ P +L ++KY+ +
Sbjct: 180 QCLRDKQR-VIYTSPIKALSNQKYREM 205
>gi|195579445|ref|XP_002079572.1| GD24019 [Drosophila simulans]
gi|194191581|gb|EDX05157.1| GD24019 [Drosophila simulans]
Length = 1051
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L + + + I N VL S TS GKT+V E I K L KQ+ I+ P
Sbjct: 141 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYTTPI 199
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++K++ EEFK
Sbjct: 200 KALSNQKFREF---TEEFK 215
>gi|441149236|ref|ZP_20965180.1| ATP-dependent RNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440619626|gb|ELQ82670.1| ATP-dependent RNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 939
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 48 EKYQSLAKAAEEFKFYLE----GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
E+ +LA E + F L+ C + K +++ PT GKT+VGE + L+ +
Sbjct: 20 EQATALAPFREMYDFALDPFQIDACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALE-QG 78
Query: 104 KSAIFILPYISLVHEKYQSLAK 125
+ + P +L ++KYQ L +
Sbjct: 79 RKCFYTTPIKALSNQKYQDLVR 100
>gi|423596303|ref|ZP_17572331.1| CRISPR-associated helicase cas3 [Bacillus cereus VD048]
gi|401219964|gb|EJR26611.1| CRISPR-associated helicase cas3 [Bacillus cereus VD048]
Length = 809
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
LSIPT GGKTL +K KI +K I+++PY +++ + + + + E+ + LE
Sbjct: 271 TLSIPTGGGKTLASLRYALKHAKIHNKKRIIYVVPYTTIIEQNAEEVRRILEDEENILE 329
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
LSIPT GGKTL +K KI +K I+++PY +++ + + + + E+ + LE
Sbjct: 271 TLSIPTGGGKTLASLRYALKHAKIHNKKRIIYVVPYTTIIEQNAEEVRRILEDEENILE 329
>gi|336380037|gb|EGO21191.1| hypothetical protein SERLADRAFT_441562 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1567
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 18/113 (15%)
Query: 20 VGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF----YLEGKCLEMI--Q 73
V E + ++ + ++ + + P +S + + Y+S+ FKF ++ CL+ I
Sbjct: 173 VPETMQLRRFSPRNENLLRLKP-VSELPDMYRSI------FKFGVFNAVQSTCLDTILHS 225
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELK-----IKQKSAIFILPYISLVHEKYQ 121
++N ++S PT GKT++ E+ I++ + K +++ P +L EKYQ
Sbjct: 226 DENVIISAPTGSGKTVLFELAIIRMVSASFPTAKTARCVYVAPTKALCTEKYQ 278
>gi|336367319|gb|EGN95664.1| hypothetical protein SERLA73DRAFT_76746 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1521
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 18/113 (15%)
Query: 20 VGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF----YLEGKCLEMI--Q 73
V E + ++ + ++ + + P +S + + Y+S+ FKF ++ CL+ I
Sbjct: 173 VPETMQLRRFSPRNENLLRLKP-VSELPDMYRSI------FKFGVFNAVQSTCLDTILHS 225
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELK-----IKQKSAIFILPYISLVHEKYQ 121
++N ++S PT GKT++ E+ I++ + K +++ P +L EKYQ
Sbjct: 226 DENVIISAPTGSGKTVLFELAIIRMVSASFPTAKTARCVYVAPTKALCTEKYQ 278
>gi|336378682|gb|EGO19839.1| ATP-dependent RNA helicase [Serpula lacrymans var. lacrymans S7.9]
Length = 1083
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYL---EGKCLEMIQ-NKNCVLSIPTSGGKTLVGEILIM 96
PY + K+ +K A E+KF L + + IQ N++ ++S TS GKT+V E I
Sbjct: 122 PYTPI--SKHVPPSKPAREYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVVAEYAIA 179
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSL 123
+ L+ KQ+ I+ P +L ++KY+ +
Sbjct: 180 QCLRDKQR-VIYTSPIKALSNQKYREM 205
>gi|338811670|ref|ZP_08623876.1| CRISPR-associated helicase Cas3 [Acetonema longum DSM 6540]
gi|337276432|gb|EGO64863.1| CRISPR-associated helicase Cas3 [Acetonema longum DSM 6540]
Length = 754
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 47 HEKYQSLAKAAEEFKF-----YLEGKCLEMIQNKNCV--LSIPTSGGKTLVGEILIMKEL 99
H+ + L + AE K + KC++M Q + LS+PT GGKTL G ++
Sbjct: 227 HQFSKKLDETAENTKVNAIRRSIREKCIQMAQKPQGIFSLSVPTGGGKTLSGLAFGLEHA 286
Query: 100 KIKQ-KSAIFILPYISLVHE 118
K I+++PY S++ +
Sbjct: 287 KKHDLDRIIYVIPYTSIIEQ 306
>gi|198415884|ref|XP_002131169.1| PREDICTED: similar to superkiller viralicidic activity 2-like 2
[Ciona intestinalis]
Length = 1037
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 54 AKAAEEFKFYL----EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
A+ A+E+KF L + L + N++ ++S TS GKT+V E I L+ KQ+ I+
Sbjct: 119 AEPAKEYKFILDPFQQEALLCLDNNQSVLVSAHTSAGKTVVAEYAIAMCLRDKQR-VIYT 177
Query: 110 LPYISLVHEKYQSLAKAAEEF 130
P +L ++KY+ L EEF
Sbjct: 178 TPIKALSNQKYRDL---YEEF 195
>gi|126696995|ref|YP_001091881.1| DNA helicase [Prochlorococcus marinus str. MIT 9301]
gi|126544038|gb|ABO18280.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9301]
Length = 908
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 58 EEFKFYLEGKCLEMIQNKNC----VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 113
E F F L+ LE I+ N VL+ PT GKTL+GE I + L + + P
Sbjct: 6 EYFPFPLDDFQLEAIRAINSGNSVVLTAPTGSGKTLIGEFAIYRGLSHDSR-VFYTTPLK 64
Query: 114 SLVHEKYQSLAKAAEEFKFYL 134
+L ++K++ A E K L
Sbjct: 65 ALSNQKFRDFANQYGENKVGL 85
>gi|157414068|ref|YP_001484934.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9215]
gi|157388643|gb|ABV51348.1| putative DNA helicase [Prochlorococcus marinus str. MIT 9215]
Length = 908
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 58 EEFKFYLEGKCLEMIQNKNC----VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 113
E F F L+ LE I+ N VL+ PT GKTL+GE I + L + + P
Sbjct: 6 EYFPFPLDDFQLEAIRAINSGNSVVLTAPTGSGKTLIGEFAIYRGLSHDSR-VFYTTPLK 64
Query: 114 SLVHEKYQSLAKAAEEFKFYL 134
+L ++K++ A E K L
Sbjct: 65 ALSNQKFRDFANQYGENKVGL 85
>gi|118576895|ref|YP_876638.1| superfamily II helicase [Cenarchaeum symbiosum A]
gi|118195416|gb|ABK78334.1| superfamily II helicase [Cenarchaeum symbiosum A]
Length = 707
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ K+ ++S PT+ GKTL+ I ++ L + A+++ P +L EK+ K
Sbjct: 36 LTDGKSVLVSAPTASGKTLIAAIAMISHLSRNRGKAVYLSPLRALAAEKFAEFGK 90
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ K+ ++S PT+ GKTL+ I ++ L + A+++ P +L EK+ K
Sbjct: 36 LTDGKSVLVSAPTASGKTLIAAIAMISHLSRNRGKAVYLSPLRALAAEKFAEFGK 90
>gi|448516971|ref|XP_003867681.1| Hfm1 protein [Candida orthopsilosis Co 90-125]
gi|380352020|emb|CCG22244.1| Hfm1 protein [Candida orthopsilosis]
Length = 1131
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 64 LEGKCLEMI--QNKNCVLSIPTSGGKTLVGEILIMKELK-IKQKSAIFILPYISLVHEKY 120
++ KC ++ KNCVLS PT GKT+V E+ I++ + + +++ P +L E+
Sbjct: 129 MQSKCFNVVYGTTKNCVLSSPTGSGKTVVFELAILRANETLYDCKVLYLAPTRALCSERK 188
Query: 121 QSLAK 125
+K
Sbjct: 189 DDWSK 193
>gi|345006414|ref|YP_004809267.1| ski2-type helicase [halophilic archaeon DL31]
gi|344322040|gb|AEN06894.1| ski2-type helicase [halophilic archaeon DL31]
Length = 808
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+N V ++PT+ GKTL+ E+ ++ ++ + +A++I+P +L EK + AE
Sbjct: 41 ENVVAAVPTASGKTLIAELAMLSAVE-RGGTALYIVPLRALASEKKAEFERWAE 93
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+N V ++PT+ GKTL+ E+ ++ ++ + +A++I+P +L EK + AE
Sbjct: 41 ENVVAAVPTASGKTLIAELAMLSAVE-RGGTALYIVPLRALASEKKAEFERWAE 93
>gi|377574835|ref|ZP_09803845.1| putative ATP-dependent helicase [Mobilicoccus pelagius NBRC 104925]
gi|377536344|dbj|GAB49010.1| putative ATP-dependent helicase [Mobilicoccus pelagius NBRC 104925]
Length = 997
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
C + K +++ PT GKT+VGE + L QK A + P +L ++KY LAK
Sbjct: 41 CRALEDGKGVLVAAPTGAGKTVVGEFAVHLGLARGQK-AFYTTPIKALSNQKYADLAK 97
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
K +++ PT GKT+VGE + L QK A + P +L ++KY LAK
Sbjct: 48 KGVLVAAPTGAGKTVVGEFAVHLGLARGQK-AFYTTPIKALSNQKYADLAK 97
>gi|387789436|ref|YP_006254501.1| superfamily II helicase [Solitalea canadensis DSM 3403]
gi|379652269|gb|AFD05325.1| superfamily II helicase [Solitalea canadensis DSM 3403]
Length = 1123
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 7 CVLSIPTSGGKTLVGEILIMK-ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF--- 62
C++SIPTS GKT + EI I+ + ++I P+ SL E +L +
Sbjct: 295 CIISIPTSSGKTRIAEIAILNCMINDPANKVLYIAPFRSLAFEVESTLEPILDNADISVS 354
Query: 63 YLEGKCL------EMIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
+L G L ++I++ + +++ P L G +++++K+
Sbjct: 355 HLYGGSLYSKLDEKIIEDSDVIIATPEKAKAILRGNTELVRQIKL 399
>gi|308808266|ref|XP_003081443.1| DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
gi|116059906|emb|CAL55965.1| DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
Length = 1096
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ + V+S PT GKTLVGE I+ L +K AI+ P +L ++K + K
Sbjct: 97 LLKGSSVVVSAPTGSGKTLVGETAILTALARGEK-AIYTTPLKALSNQKLREFQK 150
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ + V+S PT GKTLVGE I+ L +K AI+ P +L ++K + K
Sbjct: 97 LLKGSSVVVSAPTGSGKTLVGETAILTALARGEK-AIYTTPLKALSNQKLREFQK 150
>gi|168024035|ref|XP_001764542.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684120|gb|EDQ70524.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1002
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 54 AKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
AK A+E+ F L+ +CLE ++ ++S TS GKT+V E I L+ KQ+ +
Sbjct: 79 AKPAKEYPFTLDPFQREAIRCLE--AGESVLVSAHTSAGKTVVAEYAIAMALRDKQR-VV 135
Query: 108 FILPYISLVHEKYQSLAKAAEEF 130
+ P +L ++KY+ + EEF
Sbjct: 136 YTSPIKALSNQKYREM---LEEF 155
>gi|410668746|ref|YP_006921117.1| CRISPR-associated endonuclease Cas3-HD [Thermacetogenium phaeum DSM
12270]
gi|409106493|gb|AFV12618.1| CRISPR-associated endonuclease Cas3-HD [Thermacetogenium phaeum DSM
12270]
Length = 755
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 9 LSIPTSGGKTLVG-EILIMKELKIKQKSAIFILPYISLVHE 48
L++PT GKTLVG E+ ++ + I++LP+ISLV +
Sbjct: 250 LTLPTGAGKTLVGLELAMLAAERFAATGIIYVLPFISLVEQ 290
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 79 LSIPTSGGKTLVG-EILIMKELKIKQKSAIFILPYISLVHE 118
L++PT GKTLVG E+ ++ + I++LP+ISLV +
Sbjct: 250 LTLPTGAGKTLVGLELAMLAAERFAATGIIYVLPFISLVEQ 290
>gi|320586873|gb|EFW99536.1| DNA-directed DNA polymerase [Grosmannia clavigera kw1407]
Length = 1131
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 18/69 (26%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKEL-----------------KIKQKS-AIFILPYISLV 46
+N V + PT GGK+LV ++L+++++ +++S A+ +LP+++LV
Sbjct: 181 RNLVYAAPTGGGKSLVADVLMLRQVLQSNDGIVGNNTGAGFRDFRRRSKALLVLPFVALV 240
Query: 47 HEKYQSLAK 55
EK + L +
Sbjct: 241 QEKVRWLRR 249
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 18/69 (26%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKEL-----------------KIKQKS-AIFILPYISLV 116
+N V + PT GGK+LV ++L+++++ +++S A+ +LP+++LV
Sbjct: 181 RNLVYAAPTGGGKSLVADVLMLRQVLQSNDGIVGNNTGAGFRDFRRRSKALLVLPFVALV 240
Query: 117 HEKYQSLAK 125
EK + L +
Sbjct: 241 QEKVRWLRR 249
>gi|391348367|ref|XP_003748419.1| PREDICTED: activating signal cointegrator 1 complex subunit 3-like
[Metaseiulus occidentalis]
Length = 2180
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQK--SAIFILPYISLVHEKYQ 51
+ N +L PT GKT+V EI + + +++QK ++I P SLV E+ +
Sbjct: 1355 DHNVLLGAPTGSGKTIVAEIAMFRVFQMQQKRRKVVYIAPLKSLVKERVK 1404
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQK--SAIFILPYISLVHEKYQ 121
+ N +L PT GKT+V EI + + +++QK ++I P SLV E+ +
Sbjct: 1355 DHNVLLGAPTGSGKTIVAEIAMFRVFQMQQKRRKVVYIAPLKSLVKERVK 1404
>gi|349577986|dbj|GAA23152.1| K7_Hfm1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1187
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
>gi|190407184|gb|EDV10451.1| ATP-dependent DNA helicase MER3 [Saccharomyces cerevisiae RM11-1a]
Length = 1187
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
>gi|9755332|ref|NP_011263.2| Hfm1p [Saccharomyces cerevisiae S288c]
gi|114152816|sp|P51979.3|HFM1_YEAST RecName: Full=ATP-dependent DNA helicase MER3; AltName:
Full=Protein HFM1
gi|285811968|tpg|DAA07868.1| TPA: Hfm1p [Saccharomyces cerevisiae S288c]
Length = 1187
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
>gi|207345578|gb|EDZ72352.1| YGL251Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 936
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 13 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 67
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 13 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 67
>gi|780546|gb|AAA93159.1| Hfm1p [Saccharomyces cerevisiae]
Length = 1048
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 13 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 67
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 13 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 67
>gi|392299123|gb|EIW10217.1| Hfm1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1187
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
>gi|359457793|ref|ZP_09246356.1| type III restriction enzyme, res subunit [Acaryochloris sp. CCMEE
5410]
Length = 490
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
QN+ V+ +PT+ GKT + +++I + Q+S + +P + L+H+ Y L A + +
Sbjct: 92 QNRRGVVVLPTAAGKTYLAQLVI----QATQRSTLIAVPTLDLMHQWYAHLVAAFPDAEI 147
Query: 63 YLEG 66
L G
Sbjct: 148 GLLG 151
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126
QN+ V+ +PT+ GKT + +++I + Q+S + +P + L+H+ Y L A
Sbjct: 92 QNRRGVVVLPTAAGKTYLAQLVI----QATQRSTLIAVPTLDLMHQWYAHLVAA 141
>gi|151943568|gb|EDN61878.1| helicase family member [Saccharomyces cerevisiae YJM789]
Length = 1187
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
>gi|284928620|ref|YP_003421142.1| superfamily II RNA helicase [cyanobacterium UCYN-A]
gi|284809079|gb|ADB94784.1| superfamily II RNA helicase [cyanobacterium UCYN-A]
Length = 966
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
Q K+ V+ PT GKTL+GE I + L +KQ+ + P +L ++K++
Sbjct: 30 QGKSLVVCAPTGSGKTLIGEYAIYRALNLKQR-VFYTTPLKALSNQKFRDF 79
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
Q K+ V+ PT GKTL+GE I + L +KQ+ + P +L ++K++
Sbjct: 30 QGKSLVVCAPTGSGKTLIGEYAIYRALNLKQR-VFYTTPLKALSNQKFRDF 79
>gi|227496136|ref|ZP_03926442.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
gi|226834370|gb|EEH66753.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
Length = 959
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 53 LAKAAEEFKFYLE----GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
LA+ A + F L+ C + + + +++ PT GKT+VGE + L K + +
Sbjct: 22 LARFAAGYDFPLDDFQVAGCQAVERGEGVLVAAPTGAGKTIVGEFAVFLGLA-KGRKTFY 80
Query: 109 ILPYISLVHEKYQSLA 124
P +L ++KYQ LA
Sbjct: 81 TTPIKALSNQKYQDLA 96
>gi|145351001|ref|XP_001419877.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580110|gb|ABO98170.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1055
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ + V+S PT GKTLVGE I+ L +K AI+ P +L ++K + K
Sbjct: 115 LLRGSSVVVSAPTGSGKTLVGETAILTALARGEK-AIYTTPLKALSNQKLREFQK 168
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ + V+S PT GKTLVGE I+ L +K AI+ P +L ++K + K
Sbjct: 115 LLRGSSVVVSAPTGSGKTLVGETAILTALARGEK-AIYTTPLKALSNQKLREFQK 168
>gi|2131277|pir||S61610 HFM1 protein - yeast (Saccharomyces cerevisiae)
gi|1150588|emb|CAA64136.1| HFM1 [Saccharomyces cerevisiae]
gi|1322927|emb|CAA96971.1| HFM1 [Saccharomyces cerevisiae]
Length = 1046
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 13 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 67
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 13 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 67
>gi|61098430|ref|NP_001012962.1| superkiller viralicidic activity 2-like 2 [Gallus gallus]
gi|53126871|emb|CAG30992.1| hypothetical protein RCJMB04_1h14 [Gallus gallus]
Length = 1029
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 46 VHEKYQSL----AKAAEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMK 97
EK+ L K A+E+ F L+ E I N++ ++S TS GKT+ E I
Sbjct: 105 ADEKFTGLKPRTGKPAKEYPFSLDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIAL 164
Query: 98 ELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
L+ KQ+ IF P +L ++KY+ + EEF+
Sbjct: 165 ALREKQR-VIFTSPIKALSNQKYREM---YEEFQ 194
>gi|392586720|gb|EIW76056.1| antiviral helicase [Coniophora puteana RWD-64-598 SS2]
Length = 1041
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 28 ELKIKQKSAIFILPYISLVH-EKYQSLAKAAEEFKFYLEG---KCLEMIQ-NKNCVLSIP 82
EL+ + + + + P S + ++ AK A +KF L+ + IQ N++ ++S
Sbjct: 80 ELRHQVRHQVAVPPAYSYIPISQHVPPAKPARTYKFTLDPFQQVSVHAIQRNESVLVSAH 139
Query: 83 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
TS GKT+V E I + L KQ+ I+ P +L ++KY+ L
Sbjct: 140 TSAGKTVVAEYAIAQCLDNKQR-VIYTSPIKALSNQKYREL 179
>gi|367035818|ref|XP_003667191.1| hypothetical protein MYCTH_2312762 [Myceliophthora thermophila ATCC
42464]
gi|347014464|gb|AEO61946.1| hypothetical protein MYCTH_2312762 [Myceliophthora thermophila ATCC
42464]
Length = 1475
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 69 LEMIQ---NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
LEM++ KN ++++ T GKT V + I EL+ K A F+ P +SL ++++++
Sbjct: 86 LEMLEESLKKNVIVAMDTGSGKTQVAIMRIQAELERGDKIAWFLAPTVSLAEQQFETI 143
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
KN ++++ T GKT V + I EL+ K A F+ P +SL ++++++
Sbjct: 95 KNVIVAMDTGSGKTQVAIMRIQAELERGDKIAWFLAPTVSLAEQQFETI 143
>gi|416840122|ref|ZP_11903436.1| hypothetical protein SAO11_0842 [Staphylococcus aureus O11]
gi|323440398|gb|EGA98111.1| hypothetical protein SAO11_0842 [Staphylococcus aureus O11]
Length = 281
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
Query: 41 PYIS-LVHEKYQ---SLAKAA------EEFKFYLEGKCLEMIQNKN--CVLSIPTSGGKT 88
PYIS L HEK SL + E+ F+++ K +E+ NKN V+S PTS GK+
Sbjct: 63 PYISNLDHEKLSLQGSLRRNWFKSENLEDVYFHVKQKEIEIALNKNENIVVSAPTSFGKS 122
Query: 89 LVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
L+ E +I + K + + I P ++L+ E + L K +
Sbjct: 123 LIIEEVIASK---KYDNLLIIQPTLALIDETRRKLNKYND 159
>gi|268592777|ref|ZP_06126998.1| putative DEAD/DEAH box helicase [Providencia rettgeri DSM 1131]
gi|291311554|gb|EFE52007.1| putative DEAD/DEAH box helicase [Providencia rettgeri DSM 1131]
Length = 1036
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 14 SGGKTLVGEILIMKELKIKQKSAIFILP-YISLVHEKYQS-LAKAAEEFKFYLEGKCL-- 69
S + L+ +IL + + S++ +LP Y L E++ LAKA +F+ + L
Sbjct: 196 SDRELLLADILTSVIARKIKNSSLNLLPIYTGLPLERWLPILAKATFIREFWPAQRLLGD 255
Query: 70 -EMIQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKA 126
++ ++ V+ +PTS GKT E++I L + A+ I P+ SL E SL+ A
Sbjct: 256 ADVFIGRSAVVQLPTSAGKTKSAELIIRSSFLSGRASVAVIIAPFRSLCREISSSLSAA 314
>gi|87045839|gb|ABD17736.1| helicase [Methanococcus voltae PS]
Length = 871
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 17/75 (22%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----------------AIFILPYISL 45
++KN ++SIPT+ GKTL+GE+ + + KS A+FI+P +L
Sbjct: 38 KDKNFIISIPTASGKTLIGEMAFINHVLQPSKSQNNNETGDLEFLPSGKKALFIVPLKAL 97
Query: 46 VHEKYQSLAKAAEEF 60
EK+ + +F
Sbjct: 98 ATEKFDEFREKYNKF 112
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 17/75 (22%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----------------AIFILPYISL 115
++KN ++SIPT+ GKTL+GE+ + + KS A+FI+P +L
Sbjct: 38 KDKNFIISIPTASGKTLIGEMAFINHVLQPSKSQNNNETGDLEFLPSGKKALFIVPLKAL 97
Query: 116 VHEKYQSLAKAAEEF 130
EK+ + +F
Sbjct: 98 ATEKFDEFREKYNKF 112
>gi|348618560|ref|ZP_08885082.1| Helicase superfamily protein [Candidatus Glomeribacter gigasporarum
BEG34]
gi|347816164|emb|CCD29855.1| Helicase superfamily protein [Candidatus Glomeribacter gigasporarum
BEG34]
Length = 837
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKEL 99
LP S +++ Y S A+ + + + Q ++ VL + T GGKTLVG ++ L
Sbjct: 26 LPKPSGINDLYTSQAEVLQAW--------FKRRQERDVVLKLHTGGGKTLVGLLMAQSTL 77
Query: 100 KIKQKSAIFILPYISLVHEKYQSLAKA 126
++ +++ P + LV+ Q+L KA
Sbjct: 78 NETREPVLYLAPTVQLVN---QTLEKA 101
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56
Q ++ VL + T GGKTLVG ++ L ++ +++ P + LV+ Q+L KA
Sbjct: 51 QERDVVLKLHTGGGKTLVGLLMAQSTLNETREPVLYLAPTVQLVN---QTLEKA 101
>gi|333033703|emb|CBZ41967.1| DNA helicase protein [Staphylococcus aureus]
Length = 281
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
Query: 41 PYIS-LVHEKYQ---SLAKAA------EEFKFYLEGKCLEMIQNKN--CVLSIPTSGGKT 88
PYIS L HEK SL + E+ F+++ K +E+ NKN V+S PTS GK+
Sbjct: 63 PYISNLDHEKLSLQGSLRRNWFKSENLEDVYFHVKQKEIEIALNKNENIVVSAPTSFGKS 122
Query: 89 LVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
L+ E +I + K + + I P ++L+ E + L K +
Sbjct: 123 LIIEEVIASK---KYDNLLIIQPTLALIDETRRKLNKYND 159
>gi|391335944|ref|XP_003742345.1| PREDICTED: superkiller viralicidic activity 2-like 2-like
[Metaseiulus occidentalis]
Length = 1020
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A E++F L + + + I+N+ VL S TS GKT+V E I LK KQ+ I+ P
Sbjct: 106 AREYQFVLDPFQKEAILCIENEQSVLVSAHTSAGKTVVAEYAIALALKNKQR-VIYTTPI 164
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++KY+ EEFK
Sbjct: 165 KALSNQKYREF---YEEFK 180
>gi|281420257|ref|ZP_06251256.1| ATP-dependent DNA helicase RecQ [Prevotella copri DSM 18205]
gi|281405752|gb|EFB36432.1| ATP-dependent DNA helicase RecQ [Prevotella copri DSM 18205]
Length = 620
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 58 EEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
+ F+ E E++Q +C++ +PT GGK+L ++ + + +A+ I P ISL+H
Sbjct: 14 DSFRPNQEAIIKEVMQGHDCLVLMPTGGGKSLCYQVPALA----MEGTAVVISPLISLMH 69
Query: 118 EKYQSL 123
++ ++L
Sbjct: 70 DQVEAL 75
>gi|448536760|ref|XP_003871188.1| hypothetical protein CORT_0G03860 [Candida orthopsilosis Co 90-125]
gi|380355544|emb|CCG25063.1| hypothetical protein CORT_0G03860 [Candida orthopsilosis]
Length = 1052
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
PY+ + K + K A + F L+ C++ +N++ ++S TS GKT+V E
Sbjct: 111 PYVPISEHKRE---KEARTYPFTLDPFQDTAISCID--RNESVLVSAHTSAGKTVVAEYA 165
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSL 123
I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 166 IAQSLRDKQR-VIYTSPIKALSNQKYREL 193
>gi|359771716|ref|ZP_09275162.1| putative helicase [Gordonia effusa NBRC 100432]
gi|359311152|dbj|GAB17940.1| putative helicase [Gordonia effusa NBRC 100432]
Length = 705
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 55 KAAEEFKFYLEGK-----------CLEMIQNKNCVLSIPTSGGKTLV--GEILIMKELKI 101
+A EEF ++EG+ LE++ + + +L+ PT GK+LV G I +
Sbjct: 21 RAFEEFSDWVEGRGLQFYPHQEEALLELVGDSHVILATPTGSGKSLVATGAIYFARH--- 77
Query: 102 KQKSAIFILPYISLVHEKYQSLAKA 126
+ + A + P +LV EK+ L A
Sbjct: 78 RHRRAYYTAPIKALVSEKFFELCDA 102
>gi|146303940|ref|YP_001191256.1| CRISPR-associated HD domain-containing protein [Metallosphaera
sedula DSM 5348]
gi|145702190|gb|ABP95332.1| CRISPR-associated HD domain protein [Metallosphaera sedula DSM
5348]
Length = 316
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA-EEFKF 62
++ L P+ GKTL G ++ LK+ + I+ LPYIS+V + + L++ + KF
Sbjct: 256 SRTVTLIAPSGSGKTLSG---VLTALKMGKSRLIYALPYISIVEQVHDVLSRTRMDPLKF 312
Query: 63 Y 63
Y
Sbjct: 313 Y 313
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA-EEFKF 132
++ L P+ GKTL G ++ LK+ + I+ LPYIS+V + + L++ + KF
Sbjct: 256 SRTVTLIAPSGSGKTLSG---VLTALKMGKSRLIYALPYISIVEQVHDVLSRTRMDPLKF 312
Query: 133 Y 133
Y
Sbjct: 313 Y 313
>gi|19114214|ref|NP_593302.1| ATP-dependent RNA helicase, TRAMP complex subunit Mtr4
[Schizosaccharomyces pombe 972h-]
gi|3287946|sp|O14232.1|MTR4_SCHPO RecName: Full=ATP-dependent RNA helicase mtr4
gi|2330862|emb|CAB11099.1| ATP-dependent RNA helicase, TRAMP complex subunit Mtr4
[Schizosaccharomyces pombe]
Length = 1117
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 28 ELKIKQKSAIFILPYISLVH-EKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLS 80
EL+ + + + I P V K++S A + F L+ C+E + ++ ++S
Sbjct: 162 ELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIE--RQESVLVS 219
Query: 81 IPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
TS GKT+V E + + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 220 AHTSAGKTVVAEYAVAQSLRDKQR-VIYTSPIKALSNQKYREL 261
>gi|269218493|ref|ZP_06162347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269211604|gb|EEZ77944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Actinomyces sp.
oral taxon 848 str. F0332]
Length = 866
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
E+Y + A + F+ C + +N++ ++ PT GKT+V + L K+K +
Sbjct: 13 EEYAARGIALDSFQI---DACKAVARNRDVLVCAPTGSGKTVVAHFAVELALA-KEKRCV 68
Query: 108 FILPYISLVHEKYQSLAKA-AEEF 130
+ P +L ++KY LA+ EE+
Sbjct: 69 YTAPIKALSNQKYSELAELHGEEY 92
>gi|148688333|gb|EDL20280.1| mCG128467, isoform CRA_d [Mus musculus]
Length = 405
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 25 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
+++EL +QK + ILPY+++V EK SL+ E F++E
Sbjct: 1 MLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGFFVE 41
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
+++EL +QK + ILPY+++V EK SL+ E F++E
Sbjct: 1 MLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGFFVE 41
>gi|424812630|ref|ZP_18237870.1| superfamily II helicase [Candidatus Nanosalinarum sp. J07AB56]
gi|339756852|gb|EGQ40435.1| superfamily II helicase [Candidatus Nanosalinarum sp. J07AB56]
Length = 749
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ ++ V++ PT+ GKTLV E+ + K ++++P +L EKY+ ++
Sbjct: 36 VLEGEDMVVASPTASGKTLVAELALTKNTVEGDGMTVYVVPLKALASEKYEDFSE 90
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ ++ V++ PT+ GKTLV E+ + K ++++P +L EKY+ ++
Sbjct: 36 VLEGEDMVVASPTASGKTLVAELALTKNTVEGDGMTVYVVPLKALASEKYEDFSE 90
>gi|374633395|ref|ZP_09705760.1| superfamily II helicase [Metallosphaera yellowstonensis MK1]
gi|373523183|gb|EHP68103.1| superfamily II helicase [Metallosphaera yellowstonensis MK1]
Length = 703
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ K +L+ PT GKTL+ E+ ++ L + AI+ P +L EKY
Sbjct: 39 LLEGKRLLLTSPTGSGKTLIAELGMISHLLKGGRRAIYTTPLRALTSEKYHEF 91
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ K +L+ PT GKTL+ E+ ++ L + AI+ P +L EKY
Sbjct: 39 LLEGKRLLLTSPTGSGKTLIAELGMISHLLKGGRRAIYTTPLRALTSEKYHEF 91
>gi|448679746|ref|ZP_21690291.1| Pre-mRNA splicing helicase [Haloarcula argentinensis DSM 12282]
gi|445769905|gb|EMA20974.1| Pre-mRNA splicing helicase [Haloarcula argentinensis DSM 12282]
Length = 789
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 51 QSLAKAAEEFKF----YLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQK 104
+ L K A+ F F ++ L + N+ N V+S PT+ GKT + E+ I K L +
Sbjct: 5 EVLPKFADAFPFEEFNRMQSAALPALLNRDDNVVVSAPTASGKTALAELAICKTLA-EDG 63
Query: 105 SAIFILPYISLVHEK 119
+A+F+ P +L +EK
Sbjct: 64 TALFLAPLRALTNEK 78
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V+S PT+ GKT + E+ I K L + +A+F+ P +L +EK
Sbjct: 33 RDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRALTNEK 78
>gi|91070166|gb|ABE11087.1| putative DNA helicase [uncultured Prochlorococcus marinus clone
HF10-11D6]
Length = 908
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 58 EEFKFYLEGKCLEMIQNKNC----VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 113
E F F L+ LE I+ N VL+ PT GKTL+GE I + L + + P
Sbjct: 6 EYFPFPLDDFQLEAIRAINSGNSVVLTAPTGSGKTLIGEFAIYRGLS-HESRVFYTTPLK 64
Query: 114 SLVHEKYQSLAK 125
+L ++K++ A
Sbjct: 65 ALSNQKFRDFAN 76
>gi|114568023|ref|YP_755177.1| helicase-like protein [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338958|gb|ABI69806.1| helicases-like protein [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 781
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 9 LSIPTSGGKTLVG-EILIMKELKIKQKSAIFILPYISLVHE 48
L++PT GKTL+G + M + K I+ILP+ISLV +
Sbjct: 273 LTLPTGAGKTLIGLSLASMAAERFKATGIIYILPFISLVDQ 313
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 79 LSIPTSGGKTLVG-EILIMKELKIKQKSAIFILPYISLVHE 118
L++PT GKTL+G + M + K I+ILP+ISLV +
Sbjct: 273 LTLPTGAGKTLIGLSLASMAAERFKATGIIYILPFISLVDQ 313
>gi|385802390|ref|YP_005838790.1| ATP-dependent DNA helicase Hel308 [Haloquadratum walsbyi C23]
gi|339727882|emb|CCC38992.1| ATP-dependent DNA helicase Hel308 [Haloquadratum walsbyi C23]
Length = 817
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ ++ V S+PT+ GKTL+ E+ ++ ++ + ++A++I+P +L EK Q+ + EEF
Sbjct: 37 LTDGESLVASVPTASGKTLIAELAMLAAIE-RGETALYIVPLRALASEK-QTEFERWEEF 94
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+ ++ V S+PT+ GKTL+ E+ ++ ++ + ++A++I+P +L EK Q+ + EEF
Sbjct: 37 LTDGESLVASVPTASGKTLIAELAMLAAIE-RGETALYIVPLRALASEK-QTEFERWEEF 94
>gi|110666984|ref|YP_656795.1| ski2-like helicase [Haloquadratum walsbyi DSM 16790]
gi|109624731|emb|CAJ51138.1| ATP-dependent DNA helicase Hel308 [Haloquadratum walsbyi DSM
16790]
Length = 817
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ ++ V S+PT+ GKTL+ E+ ++ ++ + ++A++I+P +L EK Q+ + EEF
Sbjct: 37 LTDGESLVASVPTASGKTLIAELAMLAAIE-RGETALYIVPLRALASEK-QTEFERWEEF 94
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+ ++ V S+PT+ GKTL+ E+ ++ ++ + ++A++I+P +L EK Q+ + EEF
Sbjct: 37 LTDGESLVASVPTASGKTLIAELAMLAAIE-RGETALYIVPLRALASEK-QTEFERWEEF 94
>gi|385302494|gb|EIF46623.1| dead-box family helicase required for mrna export from nucleus
[Dekkera bruxellensis AWRI1499]
Length = 991
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILI 95
YI + K ++ AK + F L+ C++ +N++ ++S TS GKT+V E I
Sbjct: 53 YIPIGQHKRKNDAKT---YPFKLDPFQDTSISCID--RNESVLVSAHTSAGKTVVAEYAI 107
Query: 96 MKELKIKQKSAIFILPYISLVHEKYQSL 123
+ L+ KQ+ I+ P +L ++KY+ L
Sbjct: 108 AQSLRDKQR-VIYTAPIKALSNQKYREL 134
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+N++ ++S TS GKT+V E I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 85 RNESVLVSAHTSAGKTVVAEYAIAQSLRDKQR-VIYTAPIKALSNQKYREL 134
>gi|225017933|ref|ZP_03707125.1| hypothetical protein CLOSTMETH_01868 [Clostridium methylpentosum
DSM 5476]
gi|224949318|gb|EEG30527.1| hypothetical protein CLOSTMETH_01868 [Clostridium methylpentosum
DSM 5476]
Length = 796
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 9 LSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
L++PT GGKTL G + Q+ F++P +S++ + + + K E+ K LE
Sbjct: 270 LNVPTGGGKTLSGLRYALARAAEGQQRVFFVIPLLSILDQNAKEIRKYLEDPKLILE 326
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 79 LSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
L++PT GGKTL G + Q+ F++P +S++ + + + K E+ K LE
Sbjct: 270 LNVPTGGGKTLSGLRYALARAAEGQQRVFFVIPLLSILDQNAKEIRKYLEDPKLILE 326
>gi|328870919|gb|EGG19291.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 2224
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA---------IFILPYISLVHEKYQSLA 124
N N +LS PTS GKT V + I+ E+ + K+ ++I P SLV E Q+ +
Sbjct: 559 NDNLLLSAPTSAGKTNVAMLTILHEIGMHMKNGVLDRDAFKIVYIAPMKSLVQEMVQNFS 618
Query: 125 KAAEEFKFYLEVL 137
+++ ++ L
Sbjct: 619 NRLKDYGIVVKEL 631
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA---------IFILPYISLVHEKYQSLA 54
N N +LS PTS GKT V + I+ E+ + K+ ++I P SLV E Q+ +
Sbjct: 559 NDNLLLSAPTSAGKTNVAMLTILHEIGMHMKNGVLDRDAFKIVYIAPMKSLVQEMVQNFS 618
Query: 55 KAAEEF 60
+++
Sbjct: 619 NRLKDY 624
>gi|257052732|ref|YP_003130565.1| DEAD/DEAH box helicase domain protein [Halorhabdus utahensis DSM
12940]
gi|256691495|gb|ACV11832.1| DEAD/DEAH box helicase domain protein [Halorhabdus utahensis DSM
12940]
Length = 800
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+++N V+S PT+ GKT V E+ I K + + +A+F+ P +L +EK
Sbjct: 43 RDENVVVSAPTASGKTAVAEVAIAKTID-RGGTALFLAPLRALTNEK 88
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+++N V+S PT+ GKT V E+ I K + + +A+F+ P +L +EK
Sbjct: 43 RDENVVVSAPTASGKTAVAEVAIAKTID-RGGTALFLAPLRALTNEK 88
>gi|345005998|ref|YP_004808851.1| DEAD/DEAH box helicase [halophilic archaeon DL31]
gi|344321624|gb|AEN06478.1| DEAD/DEAH box helicase domain protein [halophilic archaeon DL31]
Length = 789
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ N V S PT+ GKT + E+ I K LK + +A+FI P +L +EK
Sbjct: 42 DHNVVASAPTAAGKTALAELAICKTLK-EGGTALFIAPMRALTNEK 86
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ N V S PT+ GKT + E+ I K LK + +A+FI P +L +EK
Sbjct: 42 DHNVVASAPTAAGKTALAELAICKTLK-EGGTALFIAPMRALTNEK 86
>gi|336380656|gb|EGO21809.1| hypothetical protein SERLADRAFT_441040 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1460
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILI---MKELKIKQKSAIFILPYISLVHEKYQSLA 54
QN N + ++ T GKT + +LI + + K K+K +F++P ++LV ++ S+A
Sbjct: 29 QNSNVIAALDTGSGKTFISILLIKWIVLQEKAKRKVIVFLVPKVALVKQQADSIA 83
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILI---MKELKIKQKSAIFILPYISLVHEKYQSLA 124
QN N + ++ T GKT + +LI + + K K+K +F++P ++LV ++ S+A
Sbjct: 29 QNSNVIAALDTGSGKTFISILLIKWIVLQEKAKRKVIVFLVPKVALVKQQADSIA 83
>gi|336367926|gb|EGN96270.1| hypothetical protein SERLA73DRAFT_112480 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1460
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILI---MKELKIKQKSAIFILPYISLVHEKYQSLA 54
QN N + ++ T GKT + +LI + + K K+K +F++P ++LV ++ S+A
Sbjct: 29 QNSNVIAALDTGSGKTFISILLIKWIVLQEKAKRKVIVFLVPKVALVKQQADSIA 83
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILI---MKELKIKQKSAIFILPYISLVHEKYQSLA 124
QN N + ++ T GKT + +LI + + K K+K +F++P ++LV ++ S+A
Sbjct: 29 QNSNVIAALDTGSGKTFISILLIKWIVLQEKAKRKVIVFLVPKVALVKQQADSIA 83
>gi|302550281|ref|ZP_07302623.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
40736]
gi|302467899|gb|EFL30992.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
40736]
Length = 946
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 48 EKYQSLAKAAEEFKFYLE----GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
E+ +LA E + F L+ C + + K +++ PT GKT+VGE + L ++
Sbjct: 32 EQATALASFREMYDFGLDPFQIEACQALEEGKGVLVAAPTGSGKTIVGEFAVHLAL-LQG 90
Query: 104 KSAIFILPYISLVHEKYQSLAK 125
K + P +L ++KY L +
Sbjct: 91 KKCFYTTPIKALSNQKYADLCR 112
>gi|453052611|gb|EMF00090.1| ATP-dependent RNA helicase [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 938
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 48 EKYQSLAKAAEEFKFYLE----GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
E+ +LA E + F L+ C + K +++ PT GKT+VGE + L+ +
Sbjct: 20 EQATALASFREMYDFELDPFQIDACKALEAGKGVLVAAPTGSGKTIVGEFAVHLALR-EG 78
Query: 104 KSAIFILPYISLVHEKYQSLAK 125
+ + P +L ++KY L K
Sbjct: 79 RKCFYTTPIKALSNQKYNDLVK 100
>gi|148688332|gb|EDL20279.1| mCG128467, isoform CRA_c [Mus musculus]
Length = 408
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 25 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
+++EL +QK + ILPY+++V EK SL+ E F++E
Sbjct: 1 MLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGFFVE 41
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
+++EL +QK + ILPY+++V EK SL+ E F++E
Sbjct: 1 MLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGFFVE 41
>gi|82753124|ref|XP_727549.1| DNA helicase [Plasmodium yoelii yoelii 17XNL]
gi|23483450|gb|EAA19114.1| DNA helicase [Plasmodium yoelii yoelii]
Length = 986
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 13 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
TSGGKTLV EI +E+K K + F+ P SL++EK + K
Sbjct: 99 TSGGKTLVAEIFAFEEIK-KTEKIFFLFPLNSLINEKLEYFKK 140
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 83 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
TSGGKTLV EI +E+K K + F+ P SL++EK + K
Sbjct: 99 TSGGKTLVAEIFAFEEIK-KTEKIFFLFPLNSLINEKLEYFKK 140
>gi|407797800|ref|ZP_11144716.1| hypothetical protein MJ3_12809 [Salimicrobium sp. MJ3]
gi|407017800|gb|EKE30556.1| hypothetical protein MJ3_12809 [Salimicrobium sp. MJ3]
Length = 795
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHEKYQSLAKAAEEFKFYLE 65
LSIPT GGKTL +K + K I FI+P+ +++ + + + +E+ + LE
Sbjct: 266 TLSIPTGGGKTLASLRYALKHASLYSKERIFFIVPFTTIIEQNAEEVRSILQEYSYILE 324
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHEKYQSLAKAAEEFKFYLE 135
LSIPT GGKTL +K + K I FI+P+ +++ + + + +E+ + LE
Sbjct: 266 TLSIPTGGGKTLASLRYALKHASLYSKERIFFIVPFTTIIEQNAEEVRSILQEYSYILE 324
>gi|257386737|ref|YP_003176510.1| DEAD/DEAH box helicase [Halomicrobium mukohataei DSM 12286]
gi|257169044|gb|ACV46803.1| DEAD/DEAH box helicase domain protein [Halomicrobium mukohataei DSM
12286]
Length = 807
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 58 EEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
EEF ++ + L + N+ N V+S PT+ GKT + EI I K L+ +A+F+ P +L
Sbjct: 40 EEFN-RMQSETLPALLNRDDNVVVSAPTASGKTALAEIAICKTLQ-AGGTALFLAPLRAL 97
Query: 116 VHEK 119
+EK
Sbjct: 98 TNEK 101
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V+S PT+ GKT + EI I K L+ +A+F+ P +L +EK
Sbjct: 56 RDDNVVVSAPTASGKTALAEIAICKTLQ-AGGTALFLAPLRALTNEK 101
>gi|359426798|ref|ZP_09217876.1| hypothetical protein GOAMR_68_00140 [Gordonia amarae NBRC 15530]
gi|358237897|dbj|GAB07458.1| hypothetical protein GOAMR_68_00140 [Gordonia amarae NBRC 15530]
Length = 1207
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
PTS GKTLVGE+ ++ + + + A++++P +L E Q+ A+
Sbjct: 201 PTSAGKTLVGEVAALRSIVQEGQPAVWLMPARALAAEVAQTAAR 244
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 82 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
PTS GKTLVGE+ ++ + + + A++++P +L E Q+ A+
Sbjct: 201 PTSAGKTLVGEVAALRSIVQEGQPAVWLMPARALAAEVAQTAAR 244
>gi|386002909|ref|YP_005921208.1| DEAD/DEAH box helicase [Methanosaeta harundinacea 6Ac]
gi|357210965|gb|AET65585.1| DEAD/DEAH box helicase domain protein [Methanosaeta harundinacea
6Ac]
Length = 812
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+++ KN ++ T+ GK+LVGE+ +K + +F++P ++L ++KY L+
Sbjct: 226 LLEGKNLLVVSATATGKSLVGEMAGIKNFLEGRGKLLFLVPLVALANQKYDQLS 279
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+++ KN ++ T+ GK+LVGE+ +K + +F++P ++L ++KY L+
Sbjct: 226 LLEGKNLLVVSATATGKSLVGEMAGIKNFLEGRGKLLFLVPLVALANQKYDQLS 279
>gi|354548619|emb|CCE45356.1| hypothetical protein CPAR2_703690 [Candida parapsilosis]
Length = 1051
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
PY+ + K + K A + F L+ C++ +N++ ++S TS GKT+V E
Sbjct: 110 PYVPISEHKRE---KEARTYPFTLDPFQDTAISCID--RNESVLVSAHTSAGKTVVAEYA 164
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSL 123
I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 165 IAQSLREKQR-VIYTSPIKALSNQKYREL 192
>gi|410671902|ref|YP_006924273.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
gi|409171030|gb|AFV24905.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
Length = 742
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+++ +N + +IPT+ GKTL+ E+ ++ + + A++I+P +L EK+
Sbjct: 36 LLEGRNILAAIPTASGKTLLAELAMLTSIS-RGGKALYIVPLRALASEKF 84
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+++ +N + +IPT+ GKTL+ E+ ++ + + A++I+P +L EK+
Sbjct: 36 LLEGRNILAAIPTASGKTLLAELAMLTSIS-RGGKALYIVPLRALASEKF 84
>gi|82539438|ref|XP_724107.1| RNA helicase-related [Plasmodium yoelii yoelii 17XNL]
gi|23478640|gb|EAA15672.1| RNA helicase-related [Plasmodium yoelii yoelii]
Length = 2165
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++N +L PT GKT++GE+ I++ L + + +++I P ++V+E+ +FK
Sbjct: 1231 DENILLGAPTGSGKTVIGELCILRNLLNYEDQRSVYICPMKAIVNER---CIAWKNKFKT 1287
Query: 63 YLEGKCLEMIQNKN 76
+E+ +KN
Sbjct: 1288 LFNKNVIELTGDKN 1301
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEK 119
++N +L PT GKT++GE+ I++ L + + +++I P ++V+E+
Sbjct: 1231 DENILLGAPTGSGKTVIGELCILRNLLNYEDQRSVYICPMKAIVNER 1277
>gi|68070061|ref|XP_676942.1| DNA-directed DNA polymerase [Plasmodium berghei strain ANKA]
gi|56496862|emb|CAH99685.1| DNA-directed DNA polymerase, putative [Plasmodium berghei]
Length = 803
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 13 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
TSGGKTLV EI +E+K K + F+ P SL++EK + K
Sbjct: 59 TSGGKTLVAEIFAFEEIK-KTEKIFFLFPLNSLINEKLEYFKK 100
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 83 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
TSGGKTLV EI +E+K K + F+ P SL++EK + K
Sbjct: 59 TSGGKTLVAEIFAFEEIK-KTEKIFFLFPLNSLINEKLEYFKK 100
>gi|340516882|gb|EGR47129.1| predicted protein [Trichoderma reesei QM6a]
Length = 1376
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI--FILPYISLVHEKYQSL 53
+N ++++ T GKT V + I KEL+I S I FI P +SL H+++ L
Sbjct: 15 QNVIVAMDTGSGKTQVAVLRIKKELEICDASKIIWFIAPTVSLCHQQHDVL 65
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI--FILPYISLVHEKYQSL 123
+N ++++ T GKT V + I KEL+I S I FI P +SL H+++ L
Sbjct: 15 QNVIVAMDTGSGKTQVAVLRIKKELEICDASKIIWFIAPTVSLCHQQHDVL 65
>gi|332687150|ref|YP_004456924.1| CRISPR-associated helicase Cas3 [Melissococcus plutonius ATCC
35311]
gi|332371159|dbj|BAK22115.1| CRISPR-associated helicase Cas3 [Melissococcus plutonius ATCC
35311]
Length = 362
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 67 KCLEMIQNKNCV--LSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEKYQSL 123
+CL+ + + L+IPT GGKTL ++ +I +K I++ P+ +++ + Q +
Sbjct: 4 RCLDFAKEPTGIYGLAIPTGGGKTLASLRFALEHTRIHEKERIIYVTPFTTIIEQNAQVV 63
Query: 124 AKAAEEFKFYLE 135
+E ++ LE
Sbjct: 64 RDILKEDRYILE 75
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 9 LSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEKYQSLAKAAEEFKFYLE 65
L+IPT GGKTL ++ +I +K I++ P+ +++ + Q + +E ++ LE
Sbjct: 18 LAIPTGGGKTLASLRFALEHTRIHEKERIIYVTPFTTIIEQNAQVVRDILKEDRYILE 75
>gi|70947405|ref|XP_743321.1| DNA-directed DNA polymerase [Plasmodium chabaudi chabaudi]
gi|56522763|emb|CAH80663.1| DNA-directed DNA polymerase, putative [Plasmodium chabaudi
chabaudi]
Length = 988
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 13 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
TSGGKTLV EI +E+K K + F+ P SL++EK + K
Sbjct: 99 TSGGKTLVAEIFAFEEIK-KTEKIFFLFPLNSLINEKLEYFKK 140
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 83 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
TSGGKTLV EI +E+K K + F+ P SL++EK + K
Sbjct: 99 TSGGKTLVAEIFAFEEIK-KTEKIFFLFPLNSLINEKLEYFKK 140
>gi|228994468|ref|ZP_04154326.1| hypothetical protein bpmyx0001_51650 [Bacillus pseudomycoides DSM
12442]
gi|228765263|gb|EEM13959.1| hypothetical protein bpmyx0001_51650 [Bacillus pseudomycoides DSM
12442]
Length = 814
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAK 55
LSIPT GGKTL +K KI +K I+++PY +++ + + + K
Sbjct: 276 TLSIPTGGGKTLASLRYALKHAKIHNKKRIIYVVPYTTIIEQNAEEVRK 324
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAK 125
LSIPT GGKTL +K KI +K I+++PY +++ + + + K
Sbjct: 276 TLSIPTGGGKTLASLRYALKHAKIHNKKRIIYVVPYTTIIEQNAEEVRK 324
>gi|313126895|ref|YP_004037165.1| superfamily ii helicase [Halogeometricum borinquense DSM 11551]
gi|448288639|ref|ZP_21479837.1| superfamily ii helicase [Halogeometricum borinquense DSM 11551]
gi|312293260|gb|ADQ67720.1| superfamily II helicase [Halogeometricum borinquense DSM 11551]
gi|445569024|gb|ELY23599.1| superfamily ii helicase [Halogeometricum borinquense DSM 11551]
Length = 654
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ + + V +IPT+ GKT + E+ ++ + A++I+P +L EKY++ A+
Sbjct: 36 VTEGERLVAAIPTASGKTFIAELAMLT----AEGPALYIVPLRALAREKYETFAE 86
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ + V +IPT+ GKT + E+ ++ + A++I+P +L EKY++ A+
Sbjct: 38 EGERLVAAIPTASGKTFIAELAMLT----AEGPALYIVPLRALAREKYETFAE 86
>gi|399576322|ref|ZP_10770079.1| superfamily ii helicase [Halogranum salarium B-1]
gi|399239033|gb|EJN59960.1| superfamily ii helicase [Halogranum salarium B-1]
Length = 817
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
++ ++ V S+PT+ GKTL+ E+ ++ ++ + A++I+P +L EK + AE
Sbjct: 37 ILDGESVVASVPTASGKTLIAELAMLSAVQ-RGGKALYIVPLRALASEKKAEFERWAE 93
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
++ ++ V S+PT+ GKTL+ E+ ++ ++ + A++I+P +L EK + AE
Sbjct: 37 ILDGESVVASVPTASGKTLIAELAMLSAVQ-RGGKALYIVPLRALASEKKAEFERWAE 93
>gi|379726958|ref|YP_005319143.1| CRISPR-associated helicase Cas3 [Melissococcus plutonius DAT561]
gi|376317861|dbj|BAL61648.1| CRISPR-associated helicase Cas3 [Melissococcus plutonius DAT561]
Length = 820
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 67 KCLEMIQNKNCV--LSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEKYQSL 123
+CL+ + + L+IPT GGKTL ++ +I +K I++ P+ +++ + Q +
Sbjct: 257 RCLDFAKEPTGIYGLAIPTGGGKTLASLRFALEHTRIHEKERIIYVTPFTTIIEQNAQVV 316
Query: 124 AKAAEEFKFYLE 135
+E ++ LE
Sbjct: 317 RDILKEDRYILE 328
Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 9 LSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEKYQSLAKAAEEFKFYLE 65
L+IPT GGKTL ++ +I +K I++ P+ +++ + Q + +E ++ LE
Sbjct: 271 LAIPTGGGKTLASLRFALEHTRIHEKERIIYVTPFTTIIEQNAQVVRDILKEDRYILE 328
>gi|350854524|emb|CAY19106.2| helicase, putative [Schistosoma mansoni]
Length = 1074
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 57 AEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+ F F L+ + I N++ +LS TS GKT+V E I L+ KQ+ I+ P
Sbjct: 151 AKTFPFTLDAFQQQAIICIDNNQSVLLSAHTSAGKTVVAEYAIATALREKQR-VIYTTPI 209
Query: 113 ISLVHEKYQSLAKAAEE 129
+L ++KY+ +A E
Sbjct: 210 KALSNQKYREFFEAFPE 226
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
N++ +LS TS GKT+V E I L+ KQ+ I+ P +L ++KY+ +A E
Sbjct: 172 NQSVLLSAHTSAGKTVVAEYAIATALREKQR-VIYTTPIKALSNQKYREFFEAFPE 226
>gi|308177425|ref|YP_003916831.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
gi|307744888|emb|CBT75860.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
Re117]
Length = 927
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
C ++ + + +++ PT GKT+VGE I + L+ + + A + P +L ++KY L
Sbjct: 41 CQKVAEGHSVLVAAPTGAGKTVVGEYAIYQALR-ENRKAFYTTPIKALSNQKYSEL 95
>gi|303279270|ref|XP_003058928.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460088|gb|EEH57383.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1741
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY--LEGKCLEMI--QNKNCVLSIPTSGGKTLVGEILI 95
LP +L EKY+SL A++F + ++ + + N N +L PT GKT+ E+ +
Sbjct: 893 LPRSALNDEKYESLY--AKKFTHFNAIQTQAFHTLFHTNVNVLLGAPTGSGKTISAELAM 950
Query: 96 MKELKIKQ-KSAIFILPYISLVHEKYQSLAK 125
M+ + + ++I P +LV E+ + K
Sbjct: 951 MRTFRDEPGGKVVYIAPLKALVRERIEDWRK 981
>gi|395644627|ref|ZP_10432487.1| ski2-type helicase [Methanofollis liminatans DSM 4140]
gi|395441367|gb|EJG06124.1| ski2-type helicase [Methanofollis liminatans DSM 4140]
Length = 726
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+ + KN + +IPT+ GKT+V E+++ + + K ++I+P +L EK++ +
Sbjct: 36 IFEKKNLLCAIPTASGKTIVAEMVMHRHIADGGK-CLYIVPLRALASEKFEDFS 88
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+ + KN + +IPT+ GKT+V E+++ + + K ++I+P +L EK++ +
Sbjct: 36 IFEKKNLLCAIPTASGKTIVAEMVMHRHIADGGK-CLYIVPLRALASEKFEDFS 88
>gi|300120325|emb|CBK19879.2| unnamed protein product [Blastocystis hominis]
Length = 1684
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKEL 99
LP +L + YQ L + + + ++N ++ PT GKT+V E+ +M+ L
Sbjct: 813 LPVTALKNRGYQRLYSFSHFNAVQTQVFFMSYHTDENLLICAPTGSGKTVVAELAVMRLL 872
Query: 100 KI-KQKSAIFILPYISLVHEK 119
+ K + A++I P SLV +K
Sbjct: 873 EAHKGEKAVYIGPLKSLVRQK 893
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
++N ++ PT GKT+V E+ +M+ L+ K + A++I P SLV +K L E F+
Sbjct: 847 DENLLICAPTGSGKTVVAELAVMRLLEAHKGEKAVYIGPLKSLVRQK---LLDWKESFEN 903
Query: 63 YLEGKCLEM 71
L + +E+
Sbjct: 904 RLGHRVIEL 912
>gi|256062195|ref|XP_002570288.1| helicase [Schistosoma mansoni]
Length = 1074
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 57 AEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+ F F L+ + I N++ +LS TS GKT+V E I L+ KQ+ I+ P
Sbjct: 151 AKTFPFTLDAFQQQAIICIDNNQSVLLSAHTSAGKTVVAEYAIATALREKQR-VIYTTPI 209
Query: 113 ISLVHEKYQSLAKAAEE 129
+L ++KY+ +A E
Sbjct: 210 KALSNQKYREFFEAFPE 226
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
N++ +LS TS GKT+V E I L+ KQ+ I+ P +L ++KY+ +A E
Sbjct: 172 NQSVLLSAHTSAGKTVVAEYAIATALREKQR-VIYTTPIKALSNQKYREFFEAFPE 226
>gi|448407475|ref|ZP_21573782.1| ski2-like helicase [Halosimplex carlsbadense 2-9-1]
gi|445675313|gb|ELZ27845.1| ski2-like helicase [Halosimplex carlsbadense 2-9-1]
Length = 808
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 65 EGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+G+ +E + + +N V S+PT+ GKTLV + ++ ++ + A++I+P +L EK +
Sbjct: 29 QGQAVEAGVTEGENLVASVPTASGKTLVATLAMLASVE-RGGKALYIVPLRALASEKREE 87
Query: 123 LAKAAEEFKFY 133
E+F+ Y
Sbjct: 88 F----EQFEQY 94
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V S+PT+ GKTLV + ++ ++ + A++I+P +L EK + E+F
Sbjct: 37 VTEGENLVASVPTASGKTLVATLAMLASVE-RGGKALYIVPLRALASEKREEF----EQF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
>gi|426193348|gb|EKV43282.1| hypothetical protein AGABI2DRAFT_77358 [Agaricus bisporus var.
bisporus H97]
Length = 1001
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 14 SGGKTLVGEILIMKELKIKQKSAIFILP-YISLVHEKYQSLAKAAEEFKFYLEG----KC 68
+G T G L EL+ + + + + P Y K+ AK E++F L+
Sbjct: 27 TGATTEAGSRL---ELRHQVRHQVAVPPGYNYTPIAKHVPPAKPDREYEFELDPFQRVSV 83
Query: 69 LEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ +N++ ++S TS GKT+V E I + L KQ+ I+ P +L ++KY+ + K
Sbjct: 84 YAIQRNESVLVSAHTSAGKTVVAEYAIAQCLNRKQR-VIYTSPIKALSNQKYRDMLK 139
>gi|336320860|ref|YP_004600828.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
gi|336104441|gb|AEI12260.1| DEAD/DEAH box helicase domain protein [[Cellvibrio] gilvus ATCC
13127]
Length = 964
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 47 HEKYQSLAKAAEEFKFYLEG----KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
E L + E+ F L+ C+ + + +++ PT GKT+VGE + L+
Sbjct: 46 QEDSGELGRFREQLGFRLDAFQIEACVALERGSGVLVAAPTGAGKTVVGEFAVHLALQAG 105
Query: 103 QKSAIFILPYISLVHEKYQSLAK 125
+K A + P +L ++KY L +
Sbjct: 106 RK-AFYTTPIKALSNQKYTDLVR 127
>gi|367003825|ref|XP_003686646.1| hypothetical protein TPHA_0G03720 [Tetrapisispora phaffii CBS 4417]
gi|357524947|emb|CCE64212.1| hypothetical protein TPHA_0G03720 [Tetrapisispora phaffii CBS 4417]
Length = 1151
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 64 LEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELK-----IKQKSAIFILPYISLV 116
++ C + N+ NCV+S PT GKT++ E+ I+ +K + ++I P SL
Sbjct: 121 MQSACFNQLYNETENCVISAPTGSGKTVLFELAILNLVKNNNFELGNIKVLYIAPTKSLC 180
Query: 117 HEKYQS 122
+EK +S
Sbjct: 181 YEKLKS 186
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELK-----IKQKSAIFILPYISLVHEKYQS 52
+ +NCV+S PT GKT++ E+ I+ +K + ++I P SL +EK +S
Sbjct: 132 ETENCVISAPTGSGKTVLFELAILNLVKNNNFELGNIKVLYIAPTKSLCYEKLKS 186
>gi|302660427|ref|XP_003021893.1| hypothetical protein TRV_03982 [Trichophyton verrucosum HKI 0517]
gi|291185812|gb|EFE41275.1| hypothetical protein TRV_03982 [Trichophyton verrucosum HKI 0517]
Length = 447
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 25 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNK--------- 75
I+K +I+ K A I+ I LV S + ++ F+ IQ+K
Sbjct: 185 IVKSPEIQLKHAPPIIQGIRLV-----STRELSDRFRTLFSFPLFNAIQSKTFPVIYHRT 239
Query: 76 -NCVLSIPTSGGKTLVGEILIMK---ELKIKQKSAIFILPYISLVHEKYQ 121
N VLS PT GKT++ E+ I K +LK + +++ P SL E+++
Sbjct: 240 DNVVLSAPTGSGKTVIMELAICKLVSDLKDSRFKVVYLAPTKSLCSERFR 289
>gi|154413947|ref|XP_001580002.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121914215|gb|EAY19016.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 848
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKY 50
N ++ +PTSGGKT+ ++ + + L K I+ LP+++L +EKY
Sbjct: 104 NTIVLVPTSGGKTVAADLAMAQVLEKDPTAKIIYALPFVALANEKY 149
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKY 120
N ++ +PTSGGKT+ ++ + + L K I+ LP+++L +EKY
Sbjct: 104 NTIVLVPTSGGKTVAADLAMAQVLEKDPTAKIIYALPFVALANEKY 149
>gi|429216875|ref|YP_007174865.1| superfamily II helicase [Caldisphaera lagunensis DSM 15908]
gi|429133404|gb|AFZ70416.1| superfamily II helicase [Caldisphaera lagunensis DSM 15908]
Length = 706
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
++ K+ +++ PT+ GKT + I+ L K+K AI+ P S+ +KY+ + E
Sbjct: 29 DLENGKSLLIASPTASGKTFIALDAILNSLNKKKKRAIYTAPLRSIASQKYREFKRVEE 87
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
K+ +++ PT+ GKT + I+ L K+K AI+ P S+ +KY+ + E
Sbjct: 34 KSLLIASPTASGKTFIALDAILNSLNKKKKRAIYTAPLRSIASQKYREFKRVEE 87
>gi|418062549|ref|ZP_12700324.1| helicase domain-containing protein [Methylobacterium extorquens DSM
13060]
gi|373563903|gb|EHP90056.1| helicase domain-containing protein [Methylobacterium extorquens DSM
13060]
Length = 707
Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 39 ILPYISLVHEKY--QSLAKAAE---EFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTL 89
+ PY++L + + QS+ +A + K YL K ++ ++ N +LS PTS GK+L
Sbjct: 75 LYPYVNLNNFGHLTQSVIEAHAIKLDEKVYLHAKQMKVLLWLLAGDNVILSAPTSFGKSL 134
Query: 90 VGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ + + ++ + + ILP I+L+ E + LAK
Sbjct: 135 LVDAFLAQK---RPHVVVMILPTIALIDEARRRLAK 167
>gi|195978642|ref|YP_002123886.1| hypothetical protein Sez_1540 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975347|gb|ACG62873.1| helicase conserved C-terminal domain protein [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 686
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 56 AAEEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 113
E+ +F+ E K +E I +K N +LS PTS GK+L+ E I +++ K+ I I P +
Sbjct: 85 GDEKIRFHSEQKRIEEIISKKQNIILSAPTSFGKSLLIEEFISRKI---YKNIIIIQPTL 141
Query: 114 SLVHEKYQSLAK 125
+L+ E + L K
Sbjct: 142 ALIDETRKKLRK 153
>gi|149245148|ref|XP_001527108.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449502|gb|EDK43758.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1196
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 64 LEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKEL---------KIKQKSAIFILPY 112
++ KC + + NCVLS PT GKT++ E+ I++E+ A+++ P
Sbjct: 1 MQSKCFQCVYGTSFNCVLSSPTGSGKTVIFELAILREMISLHDQGCTNGDDAKALYLAPT 60
Query: 113 ISLVHEKYQSLAK 125
+L E+ +K
Sbjct: 61 KALCSERQADWSK 73
>gi|449517355|ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein
200 kDa helicase-like [Cucumis sativus]
Length = 2175
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY--LEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILI 95
LP +L + Y++L ++FK + ++ + ++ N N +++ PT GKT+ E I
Sbjct: 1336 LPVTALRNPSYEALY---QDFKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAI 1392
Query: 96 MKELKIKQKS---AIFILPYISLVHEKYQSLAK 125
++ + Q + A++I P SL E+Y+ K
Sbjct: 1393 LRNYQKGQDNVLRAVYIAPIESLAKERYRDWDK 1425
>gi|449459768|ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Cucumis sativus]
Length = 2175
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY--LEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILI 95
LP +L + Y++L ++FK + ++ + ++ N N +++ PT GKT+ E I
Sbjct: 1336 LPVTALRNPSYEALY---QDFKHFNPVQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAI 1392
Query: 96 MKELKIKQKS---AIFILPYISLVHEKYQSLAK 125
++ + Q + A++I P SL E+Y+ K
Sbjct: 1393 LRNYQKGQDNVLRAVYIAPIESLAKERYRDWDK 1425
>gi|408403348|ref|YP_006861331.1| ski2-like helicase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408363944|gb|AFU57674.1| ski2-like helicase [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 724
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ K +++ PT+ GKTL+ + I+K ++ K A+++ P +L EKY L
Sbjct: 37 ILEGKRMLVTTPTASGKTLIAMMAILKAVE-KGTKAVYLTPLRALASEKYDDL 88
Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ K +++ PT+ GKTL+ + I+K ++ K A+++ P +L EKY L
Sbjct: 37 ILEGKRMLVTTPTASGKTLIAMMAILKAVE-KGTKAVYLTPLRALASEKYDDL 88
>gi|448416915|ref|ZP_21579018.1| superfamily ii helicase [Halosarcina pallida JCM 14848]
gi|445678598|gb|ELZ31086.1| superfamily ii helicase [Halosarcina pallida JCM 14848]
Length = 784
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V + PT+ GKT + E+ I + LK K +A+FI P +L +EK
Sbjct: 33 RDDNVVAAAPTASGKTALAELAICRTLK-KGGTALFIAPLRALTNEK 78
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
++ N V + PT+ GKT + E+ I + LK K +A+FI P +L +EK
Sbjct: 33 RDDNVVAAAPTASGKTALAELAICRTLK-KGGTALFIAPLRALTNEK 78
>gi|221194665|ref|ZP_03567722.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium rimae ATCC
49626]
gi|221185569|gb|EEE17959.1| single-stranded-DNA-specific exonuclease RecJ [Atopobium rimae ATCC
49626]
Length = 1122
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
Q +C+ + T GK+L+ + ++E + +++++FI P +LVH++ L EEF
Sbjct: 652 QGNSCLCVMATGRGKSLIFHVHALREALLAKRASVFIYPLRALVHDQAHHL---EEEF 706
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
Q +C+ + T GK+L+ + ++E + +++++FI P +LVH++ L EEF
Sbjct: 652 QGNSCLCVMATGRGKSLIFHVHALREALLAKRASVFIYPLRALVHDQAHHL---EEEF 706
>gi|150398987|ref|YP_001322754.1| CRISPR-associated helicase Cas3 [Methanococcus vannielii SB]
gi|150011690|gb|ABR54142.1| CRISPR-associated helicase Cas3 [Methanococcus vannielii SB]
Length = 765
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 56 AAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVG---EILIMKELKIKQK---SAIFI 109
A E K+ LE +++ NK +++PT GKT++G I++ LK +Q I+
Sbjct: 247 AFNELKYELEE--VDLNNNKIFSINMPTGTGKTMLGYYSAFKILERLKNEQNLNSQIIYC 304
Query: 110 LPYISLVHEKYQSLAKAAE 128
LPY+S++ + Y L K E
Sbjct: 305 LPYMSIIDQNYAELYKLLE 323
>gi|365765714|gb|EHN07220.1| Hfm1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 1046
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELK-----IKQKSAIFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 13 NENCIISSPTGSGKTVLFELAILRLIKETNNDTNNTKTIYIAPTKSLCYEMYKNW 67
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELK-----IKQKSAIFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 13 NENCIISSPTGSGKTVLFELAILRLIKETNNDTNNTKTIYIAPTKSLCYEMYKNW 67
>gi|352095918|ref|ZP_08956865.1| DSH domain protein [Synechococcus sp. WH 8016]
gi|351677274|gb|EHA60423.1| DSH domain protein [Synechococcus sp. WH 8016]
Length = 911
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 57 AEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
++ F F L+G LE I Q + V+S PT GKTLVGE I + + QK + P
Sbjct: 7 SQLFPFPLDGFQLESIDALNQGHSVVVSAPTGSGKTLVGEYAIHRAIAHGQK-VFYTTPL 65
Query: 113 ISLVHEKYQSL 123
+L ++K +
Sbjct: 66 KALSNQKLRDF 76
>gi|113954669|ref|YP_731534.1| superfamily II RNA helicase [Synechococcus sp. CC9311]
gi|113882020|gb|ABI46978.1| Superfamily II RNA helicase [Synechococcus sp. CC9311]
Length = 910
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 57 AEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
++ F F L+G LE I Q + V+S PT GKTLVGE I + + QK + P
Sbjct: 6 SQLFPFPLDGFQLESIDALNQGHSVVVSAPTGSGKTLVGEYAIHRAIAHGQK-VFYTTPL 64
Query: 113 ISLVHEKYQSL 123
+L ++K +
Sbjct: 65 KALSNQKLRDF 75
>gi|149235740|ref|XP_001523748.1| ATP-dependent RNA helicase DOB1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452727|gb|EDK46983.1| ATP-dependent RNA helicase DOB1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 970
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
PYI + K + AK + F L+ C++ ++++ ++S TS GKT+V E
Sbjct: 118 PYIPISEHKRKHEAKT---YPFTLDPFQDTAISCID--RSESVLVSAHTSAGKTVVAEYA 172
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSL 123
I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 173 IAQSLREKQR-VIYTSPIKALSNQKYREL 200
>gi|256752826|ref|ZP_05493668.1| CRISPR-associated HD domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748301|gb|EEU61363.1| CRISPR-associated HD domain protein [Thermoanaerobacter ethanolicus
CCSD1]
Length = 493
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 57 AEEFKFYLEGKCLEMIQNKNCVLSI--PTSGGKTLVG--EILIMKELKIKQKSAIFILPY 112
E FK L+ LE N++ + SI PT GKT+ G L ++EL + I+ LP+
Sbjct: 253 TEVFKLVLDN--LEKNYNRSRIFSITAPTGTGKTITGFFAALKLRELLGNNRRIIYSLPF 310
Query: 113 ISLVHEKYQSLAKAAE 128
S++ + Y +L + E
Sbjct: 311 TSIIEQNYDALVELLE 326
>gi|386002437|ref|YP_005920736.1| Putative Ski2-type helicase [Methanosaeta harundinacea 6Ac]
gi|357210493|gb|AET65113.1| Putative Ski2-type helicase [Methanosaeta harundinacea 6Ac]
Length = 717
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 11/80 (13%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS 105
+ E Y A+A E K LEGK + ++S+PT+ GKT++ E+ +++ +
Sbjct: 32 IRELYPPQAEAVE--KGLLEGKSI--------LVSVPTAAGKTMMAELAMLRA-ALSGGR 80
Query: 106 AIFILPYISLVHEKYQSLAK 125
+++I+P +L EK+ + ++
Sbjct: 81 SLYIVPLRALASEKHAAFSR 100
>gi|310831372|ref|YP_003970015.1| putative superfamily II RNA helicase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386556|gb|ADO67416.1| putative superfamily II RNA helicase [Cafeteria roenbergensis virus
BV-PW1]
Length = 772
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
YI+ KY+ + + F+ Y C + N+N +++ T GKT+ E I K +
Sbjct: 13 YINKYESKYRQFSFELDHFQKY---ACEGIDNNENVFVAVATGSGKTVPAEYAIAKAMS- 68
Query: 102 KQKSAIFILPYISLVHEKYQSLAK 125
+ K ++I P +L ++KY+ ++
Sbjct: 69 ENKKVVYISPIKALSNQKYKDFSE 92
>gi|289191739|ref|YP_003457680.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
FS406-22]
gi|288938189|gb|ADC68944.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
FS406-22]
Length = 808
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++ ++ ++ TS GKTL+GE+ +K L K +F++P ++L ++KY + E+
Sbjct: 224 LLKGEDLLIVSATSSGKTLIGELAGIKNLVETGKKFLFLVPLVALANQKYLEFKERYEKL 283
Query: 131 KF 132
F
Sbjct: 284 GF 285
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ ++ ++ TS GKTL+GE+ +K L K +F++P ++L ++KY + E+
Sbjct: 224 LLKGEDLLIVSATSSGKTLIGELAGIKNLVETGKKFLFLVPLVALANQKYLEFKERYEKL 283
Query: 61 KF 62
F
Sbjct: 284 GF 285
>gi|119494023|ref|ZP_01624580.1| sulfur deprivation response regulator [Lyngbya sp. PCC 8106]
gi|119452240|gb|EAW33439.1| sulfur deprivation response regulator [Lyngbya sp. PCC 8106]
Length = 600
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 35 SAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
+ + I P SLV Q+L+++ + KF L+ LE+IQN N S P VG+IL
Sbjct: 221 TELIITPRSSLVG---QTLSRSEIQRKFDLD--VLEVIQN-NVRFSQPLGDKVLGVGDIL 274
Query: 95 IMKE-----LKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
+++ LKI+++ + +LP I +++ +S+ + EE
Sbjct: 275 VIRSSKEDLLKIREERGLSLLPDIQFKNDEIESILTSEEE 314
>gi|383852966|ref|XP_003701996.1| PREDICTED: activating signal cointegrator 1 complex subunit 3
[Megachile rotundata]
Length = 2118
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELK-IKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ N +L PT GKT+ EI +++ K + A++I P +LV E+ + ++K
Sbjct: 1304 DNNVLLGAPTGSGKTIAAEIAMLRVFKQYPTQKAVYIAPLKALVRERIK-------DWKV 1356
Query: 63 YLEGK 67
LEGK
Sbjct: 1357 RLEGK 1361
>gi|393795380|ref|ZP_10378744.1| DEAD/DEAH box helicase [Candidatus Nitrosoarchaeum limnia BG20]
Length = 1151
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHE 48
N N V+ +PTS GKT + E+ +++ L K K I++ PY +LV E
Sbjct: 304 NSNKVIKMPTSAGKTRIAELAMVQMLAKNPGKKCIYVAPYRALVSE 349
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHE 118
N N V+ +PTS GKT + E+ +++ L K K I++ PY +LV E
Sbjct: 304 NSNKVIKMPTSAGKTRIAELAMVQMLAKNPGKKCIYVAPYRALVSE 349
>gi|320530650|ref|ZP_08031699.1| CRISPR-associated helicase Cas3 [Selenomonas artemidis F0399]
gi|320137101|gb|EFW29034.1| CRISPR-associated helicase Cas3 [Selenomonas artemidis F0399]
Length = 813
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 30 KIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCV--LSIPTSGGK 87
K+++K A F +P EK +S+A+ ++ + CL+ + + + L++PT GGK
Sbjct: 241 KLEKKIAGFPMPR----EEKAKSIAQLRQK----MSDDCLDAAEQQPGIYRLTVPTGGGK 292
Query: 88 TLVGEILIMKELK-IKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
TL + K +K I ++PY S++ + + + + E + LE
Sbjct: 293 TLASMRFALTHAKRWHKKRIIVVIPYTSIIDQNAKEIREIFEHDEAILE 341
>gi|259146266|emb|CAY79523.1| Hfm1p [Saccharomyces cerevisiae EC1118]
Length = 1187
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL ++ Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYDMYKNW 208
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL ++ Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYDMYKNW 208
>gi|237745718|ref|ZP_04576198.1| helicase [Oxalobacter formigenes HOxBLS]
gi|229377069|gb|EEO27160.1| helicase [Oxalobacter formigenes HOxBLS]
Length = 496
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 48
KN +L PT GKTL+G LI +E + K K A+F+ I+L+ +
Sbjct: 26 KNQILCAPTGAGKTLIGASLI-QECRNKGKRAVFVCDRINLIDQ 68
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
KN +L PT GKTL+G LI +E + K K A+F+ I+L+ +
Sbjct: 26 KNQILCAPTGAGKTLIGASLI-QECRNKGKRAVFVCDRINLIDQ 68
>gi|118430925|ref|NP_147034.2| holliday junction migration helicase [Aeropyrum pernix K1]
gi|150421571|sp|Q9YFQ8.2|HELS_AERPE RecName: Full=Putative ski2-type helicase
gi|116062250|dbj|BAA79103.2| holliday junction migration helicase [Aeropyrum pernix K1]
Length = 735
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+ +N V++ PT GKT + + I+ L A +++P S+ +EKY S +
Sbjct: 42 KGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFS 93
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+ +N V++ PT GKT + + I+ L A +++P S+ +EKY S +
Sbjct: 42 KGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFS 93
>gi|452210902|ref|YP_007491016.1| Archaea-specific Superfamily II helicase MJ1401 [Methanosarcina
mazei Tuc01]
gi|452100804|gb|AGF97744.1| Archaea-specific Superfamily II helicase MJ1401 [Methanosarcina
mazei Tuc01]
Length = 823
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS 105
+K++ + E ++G +E +++ KN + T+ GKTL+GE+ ++ L K+
Sbjct: 203 KKFKEMLLEKSETLLPVQGLSIEAGLLERKNQFVVSATATGKTLIGEMAGVQNLLNKKGK 262
Query: 106 AIFILPYISLVHEKYQSLAK 125
++++P ++L ++KY +
Sbjct: 263 MLYLVPLVALANQKYDQFTE 282
Score = 35.0 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 34/55 (61%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ KN + T+ GKTL+GE+ ++ L K+ ++++P ++L ++KY +
Sbjct: 228 LLERKNQFVVSATATGKTLIGEMAGVQNLLNKKGKMLYLVPLVALANQKYDQFTE 282
>gi|256272490|gb|EEU07470.1| Hfm1p [Saccharomyces cerevisiae JAY291]
Length = 1188
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL ++ Y++
Sbjct: 155 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYDMYKNW 209
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL ++ Y++
Sbjct: 155 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYDMYKNW 209
>gi|348027235|ref|YP_004767040.1| metal dependent phosphohydrolase [Megasphaera elsdenii DSM 20460]
gi|341823289|emb|CCC74213.1| metal dependent phosphohydrolase [Megasphaera elsdenii DSM 20460]
Length = 730
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 9 LSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHE 48
L++PT GGKTL +K +K K++ I+I+PY S++ +
Sbjct: 237 LTVPTGGGKTLSSLAFALKHAIKYKKQRIIYIIPYTSIIEQ 277
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 79 LSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHE 118
L++PT GGKTL +K +K K++ I+I+PY S++ +
Sbjct: 237 LTVPTGGGKTLSSLAFALKHAIKYKKQRIIYIIPYTSIIEQ 277
>gi|322371488|ref|ZP_08046037.1| DEAD/DEAH box helicase domain protein [Haladaptatus
paucihalophilus DX253]
gi|320549020|gb|EFW90685.1| DEAD/DEAH box helicase domain protein [Haladaptatus
paucihalophilus DX253]
Length = 780
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++N V S PT+ GKT + E+ I K L+ +A+FI P +L +EK
Sbjct: 34 DENVVASAPTASGKTALAELAICKALR-DDGTALFIAPLRALTNEK 78
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
++N V S PT+ GKT + E+ I K L+ +A+FI P +L +EK
Sbjct: 34 DENVVASAPTASGKTALAELAICKALR-DDGTALFIAPLRALTNEK 78
>gi|15291373|gb|AAK92955.1| GH18520p [Drosophila melanogaster]
Length = 774
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQSLAKA 126
CL N N +L PT GKT+V EI I + L K ++I P +LV E+ +
Sbjct: 259 CLYHTDN-NVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQR 317
Query: 127 AEEFKFYLEVLE 138
+ L+V+E
Sbjct: 318 FQRSSLGLKVVE 329
>gi|221504905|gb|EEE30570.1| RNA helicase, putative [Toxoplasma gondii VEG]
Length = 1206
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 48 EKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
EK + + A ++KF L+ CLE ++ +++ TS GKT+V E I ++
Sbjct: 219 EKKEGRKEPARQYKFRLDAFQQRSVLCLE--AGESVLVAAHTSAGKTVVAEYAIAMSIRD 276
Query: 102 KQKSAIFILPYISLVHEKYQSLAKA 126
KQ+ ++ P +L ++KY+ L+++
Sbjct: 277 KQR-VVYTSPIKALSNQKYRDLSES 300
>gi|256810550|ref|YP_003127919.1| DEAD/DEAH box helicase [Methanocaldococcus fervens AG86]
gi|256793750|gb|ACV24419.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
AG86]
Length = 807
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++ ++ ++ TS GKTL+GE+ +K L K +F++P ++L ++KY + E+
Sbjct: 223 LLKGEDLLIVSATSSGKTLIGELAGIKNLIETGKKFLFLVPLVALANQKYLEFKERYEKL 282
Query: 131 KF 132
F
Sbjct: 283 GF 284
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ ++ ++ TS GKTL+GE+ +K L K +F++P ++L ++KY + E+
Sbjct: 223 LLKGEDLLIVSATSSGKTLIGELAGIKNLIETGKKFLFLVPLVALANQKYLEFKERYEKL 282
Query: 61 KF 62
F
Sbjct: 283 GF 284
>gi|76800898|ref|YP_325906.1| ski2-like helicase [Natronomonas pharaonis DSM 2160]
gi|121696877|sp|Q3IU46.1|HELS_NATPD RecName: Full=Putative ski2-type helicase
gi|76556763|emb|CAI48337.1| ATP-dependent DNA helicase Hel308 [Natronomonas pharaonis DSM
2160]
Length = 747
Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ V S+PT+ GKTLV ++ ++ + + +A++I+P +L EK + A A EE+
Sbjct: 41 ESLVASVPTASGKTLVAQLAMLSAID-RGGTALYIVPLRALASEKREEFA-AFEEY 94
Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ V S+PT+ GKTLV ++ ++ + + +A++I+P +L EK + A A EE+
Sbjct: 41 ESLVASVPTASGKTLVAQLAMLSAID-RGGTALYIVPLRALASEKREEFA-AFEEY 94
>gi|295092757|emb|CBK78864.1| Superfamily II helicase [Clostridium cf. saccharolyticum K10]
Length = 263
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
++ SL K A + + G +++ ++ TS GKTLV E+ IM LK ++KS I
Sbjct: 43 QFTSLQKEAFNKEGFWRGD--PKTDSQHVIVQGATSSGKTLVSEMAIMDCLKSRKKS-IV 99
Query: 109 ILPYISLVHEKYQSL 123
++P ++V E+ +SL
Sbjct: 100 LVPLKAMVRERCESL 114
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 13 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
TS GKTLV E+ IM LK ++KS I ++P ++V E+ +SL
Sbjct: 75 TSSGKTLVSEMAIMDCLKSRKKS-IVLVPLKAMVRERCESL 114
>gi|237843633|ref|XP_002371114.1| RNA helicase, putative [Toxoplasma gondii ME49]
gi|211968778|gb|EEB03974.1| RNA helicase, putative [Toxoplasma gondii ME49]
Length = 1206
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 48 EKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
EK + + A ++KF L+ CLE ++ +++ TS GKT+V E I ++
Sbjct: 219 EKKEGRKEPARQYKFRLDAFQQRSVLCLE--AGESVLVAAHTSAGKTVVAEYAIAMSIRD 276
Query: 102 KQKSAIFILPYISLVHEKYQSLAKA 126
KQ+ ++ P +L ++KY+ L+++
Sbjct: 277 KQR-VVYTSPIKALSNQKYRDLSES 300
>gi|126178370|ref|YP_001046335.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125861164|gb|ABN56353.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
JR1]
Length = 669
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
+++ ++ ++ T+ GKT +GE+ MK + +F++P ++L ++KYQ
Sbjct: 219 LLEGQHLLVVSATASGKTFIGEMAGMKNFLEGRGRTLFLVPLVALANQKYQ 269
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 51
+++ ++ ++ T+ GKT +GE+ MK + +F++P ++L ++KYQ
Sbjct: 219 LLEGQHLLVVSATASGKTFIGEMAGMKNFLEGRGRTLFLVPLVALANQKYQ 269
>gi|374814539|ref|ZP_09718276.1| putative helicase [Treponema primitia ZAS-1]
Length = 741
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 23/92 (25%)
Query: 50 YQSLAKAAEEFKFYLEGKCLEMIQN-----------KNC-----------VLSIPTSGGK 87
Y+S+ + + F Y+EGK + +N +C L++PT GGK
Sbjct: 199 YRSITELQQRFNNYMEGKAKSLGRNLRLYEARQRVLSDCRAAAVWQSGFFSLTVPTGGGK 258
Query: 88 TLVGEILIMKEL-KIKQKSAIFILPYISLVHE 118
TL +K + K+ I+++PY S++ +
Sbjct: 259 TLSSMAFALKHAEQYKKDRVIYVIPYTSIIEQ 290
>gi|297559749|ref|YP_003678723.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844197|gb|ADH66217.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 835
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 35 SAIFILPYISLVHEKYQSLAKAAEEFKFYL----EGKCLEMIQNKNCVLSIPTSGGKTLV 90
S I +LP +++ A AEE L E +E++ N +L+ PT GK++V
Sbjct: 2 SLIDVLPAEPEPDSLFEAFALWAEERGLTLYPHQEEALIEVVSGSNVILNTPTGSGKSMV 61
Query: 91 GEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ L + + A + P +LV EK+ L K
Sbjct: 62 ATGALFAALA-RDECAFYTAPIKALVSEKFFDLCK 95
>gi|33865170|ref|NP_896729.1| DNA helicase [Synechococcus sp. WH 8102]
gi|33638854|emb|CAE07151.1| putative DNA helicase [Synechococcus sp. WH 8102]
Length = 909
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 60 FKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
F F L+ LE I Q + V+S PT GKTLVGE I + L QK + P +L
Sbjct: 12 FPFPLDDFQLEAIDALNQGHSVVVSAPTGSGKTLVGEYAIHRALAHGQK-VFYTTPLKAL 70
Query: 116 VHEKYQSLAKA 126
++K + +A
Sbjct: 71 SNQKLRDFREA 81
>gi|326502430|dbj|BAJ95278.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1004
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 54 AKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
K A+ + F L+ CLE +N++ ++S TS GKT V E I + KQ+ I
Sbjct: 75 GKMAKTYPFQLDPFQSVSIACLE--RNESVLVSAHTSAGKTAVAEYAIAMSFRDKQR-VI 131
Query: 108 FILPYISLVHEKYQSLAK 125
+ P +L ++KY+ L++
Sbjct: 132 YTSPLKALSNQKYRELSQ 149
>gi|195501254|ref|XP_002097724.1| GE24317 [Drosophila yakuba]
gi|194183825|gb|EDW97436.1| GE24317 [Drosophila yakuba]
Length = 2183
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQSLAKA 126
CL N N +L PT GKT+V EI I + L K ++I P +LV E+ +
Sbjct: 1347 CLYHTDN-NVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERISDWEQR 1405
Query: 127 AEEFKFYLEVLE 138
+ L+V+E
Sbjct: 1406 FQRSSLGLKVVE 1417
>gi|152965851|ref|YP_001361635.1| DEAD/DEAH box helicase [Kineococcus radiotolerans SRS30216]
gi|151360368|gb|ABS03371.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
SRS30216]
Length = 931
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 53 LAKAAEEFKFYLEG----KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
LA+ A+ F L+G C + + +++ PT GKT+VGE L+ +K A +
Sbjct: 22 LAQFADTVGFELDGFQLQACRALEAGRGVLVAAPTGAGKTVVGEFAAHLALRTGRK-AFY 80
Query: 109 ILPYISLVHEKYQSLAK 125
P +L ++KY L +
Sbjct: 81 TTPIKALSNQKYTELVE 97
>gi|221484727|gb|EEE23021.1| hypothetical protein TGGT1_038730 [Toxoplasma gondii GT1]
Length = 1206
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 48 EKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
EK + + A ++KF L+ CLE ++ +++ TS GKT+V E I ++
Sbjct: 219 EKKEGRKEPARQYKFRLDAFQQRSVLCLE--AGESVLVAAHTSAGKTVVAEYAIAMSIRD 276
Query: 102 KQKSAIFILPYISLVHEKYQSLAKA 126
KQ+ ++ P +L ++KY+ L+++
Sbjct: 277 KQR-VVYTSPIKALSNQKYRDLSES 300
>gi|297618671|ref|YP_003706776.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
voltae A3]
gi|297377648|gb|ADI35803.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3]
Length = 1033
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELK-------IKQKSAIFILPYISLVHEKY 50
N + +++ TS GKTL+GE+ +K L+ +QK +F++P ++L ++KY
Sbjct: 266 HNNDLLITSATSSGKTLIGELAGIKNLENGKNETPPQQKKFLFLVPLVALANQKY 320
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELK-------IKQKSAIFILPYISLVHEKY 120
N + +++ TS GKTL+GE+ +K L+ +QK +F++P ++L ++KY
Sbjct: 266 HNNDLLITSATSSGKTLIGELAGIKNLENGKNETPPQQKKFLFLVPLVALANQKY 320
>gi|147918729|ref|YP_687548.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
gi|110622944|emb|CAJ38222.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
Length = 746
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 57 AEEFKFYL-EGKCLEM-IQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYI 113
E+ + Y + K +++ + KN ++S PT+ GKTL I + + L+ K+ +A+++ P
Sbjct: 51 GEKIRLYTHQAKAIDLALDGKNVIVSTPTASGKTLAFNIPVFQALLEDKRATALYLYPMK 110
Query: 114 SLVHEKYQSLAKAAE 128
+L +++ ++L + E
Sbjct: 111 ALSNDQLKTLRRMDE 125
>gi|71032923|ref|XP_766103.1| RNA helicase [Theileria parva strain Muguga]
gi|68353060|gb|EAN33820.1| RNA helicase, putative [Theileria parva]
Length = 1764
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAK 125
+ +++ V++ PT GKTLV E+ + + K K A++I P +L HE+++ K
Sbjct: 1001 MTDESLVVAAPTGSGKTLVAELGLFRLFDKFPGKIAVYIAPLKALAHERFKDWCK 1055
Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAK 55
+++ V++ PT GKTLV E+ + + K K A++I P +L HE+++ K
Sbjct: 1003 DESLVVAAPTGSGKTLVAELGLFRLFDKFPGKIAVYIAPLKALAHERFKDWCK 1055
>gi|84489970|ref|YP_448202.1| helicase [Methanosphaera stadtmanae DSM 3091]
gi|84373289|gb|ABC57559.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
Length = 834
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++N+N ++ T+ GKTLVGE+ + + + K I++ P ++L ++KY+ K
Sbjct: 230 LLKNENLLIVSATASGKTLVGELAGIPKA-LNHKKLIYLTPLVALANQKYRDFKK 283
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++N+N ++ T+ GKTLVGE+ + + + K I++ P ++L ++KY+ K
Sbjct: 230 LLKNENLLIVSATASGKTLVGELAGIPKA-LNHKKLIYLTPLVALANQKYRDFKK 283
>gi|400974533|ref|ZP_10801764.1| ATP-dependent RNA helicase [Salinibacterium sp. PAMC 21357]
Length = 810
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
C + +K+ +++ PT GKT++ E I + ++++ + P +L ++K+Q L
Sbjct: 41 CQVVEDDKSVLVAAPTGAGKTIIAEFAIYRAMQLEGPKVFYTAPMKALSNQKFQEL 96
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+K+ +++ PT GKT++ E I + ++++ + P +L ++K+Q L
Sbjct: 47 DKSVLVAAPTGAGKTIIAEFAIYRAMQLEGPKVFYTAPMKALSNQKFQEL 96
>gi|354584435|ref|ZP_09003330.1| metal dependent phosphohydrolase [Paenibacillus lactis 154]
gi|353196820|gb|EHB62321.1| metal dependent phosphohydrolase [Paenibacillus lactis 154]
Length = 808
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 9 LSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
LSIPT GGKTL +K +I K I+++PY +++ + + + +E ++ LE
Sbjct: 272 LSIPTGGGKTLASLRYALKHARIHGKDRIIYVVPYTTIIEQNAAEIREILQEDEWILE 329
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 79 LSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
LSIPT GGKTL +K +I K I+++PY +++ + + + +E ++ LE
Sbjct: 272 LSIPTGGGKTLASLRYALKHARIHGKDRIIYVVPYTTIIEQNAAEIREILQEDEWILE 329
>gi|268536794|ref|XP_002633532.1| Hypothetical protein CBG05399 [Caenorhabditis briggsae]
Length = 531
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 61 KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK-----SAIFILPYISL 115
+ Y E C I+ N +++ PT GKT+V +I ++++ A+F+ P ++
Sbjct: 220 RNYQEELCRLAIEGVNTIITAPTGTGKTVVAAKIIKHHFEVEENKEQRFKALFMTPNTTI 279
Query: 116 VHEKYQSLAKAAEEFKFYL 134
+H++ A++ K+YL
Sbjct: 280 LHQQ-------ADKLKYYL 291
>gi|320162936|gb|EFW39835.1| SKIV2L2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 997
Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 12/83 (14%)
Query: 54 AKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
A A+ + F L+ +CLE +++ ++S TS GKT+V E I L+ KQ+ I
Sbjct: 68 ATPAKSYPFTLDPFQREAVRCLE--HHESVLVSAHTSAGKTVVAEYAIAMSLRDKQR-CI 124
Query: 108 FILPYISLVHEKYQSLAKAAEEF 130
+ P +L ++KY+ L EEF
Sbjct: 125 YTTPIKALSNQKYREL---NEEF 144
>gi|449527177|ref|XP_004170589.1| PREDICTED: superkiller viralicidic activity 2-like 2-like, partial
[Cucumis sativus]
Length = 865
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
CLE +N++ ++S TS GKT V E I + KQ+ I+ P +L ++KY+ L +
Sbjct: 111 CLE--RNESILVSAHTSAGKTAVAEYAIAMAFRDKQR-VIYTSPLKALSNQKYREL---S 164
Query: 128 EEFK 131
+EFK
Sbjct: 165 QEFK 168
>gi|448712750|ref|ZP_21701779.1| ski2-like helicase [Halobiforma nitratireducens JCM 10879]
gi|445790176|gb|EMA40845.1| ski2-like helicase [Halobiforma nitratireducens JCM 10879]
Length = 793
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ +N V ++PT+ GKT++ + ++ ++ + +A++I+P +L EK + +A EEF
Sbjct: 38 LEGENLVAAVPTASGKTMIAALSMLSAVE-RGGTALYIVPLRALASEKKEEF-EAYEEF 94
>gi|383807297|ref|ZP_09962857.1| putative helicase [Candidatus Aquiluna sp. IMCC13023]
gi|383298651|gb|EIC91266.1| putative helicase [Candidatus Aquiluna sp. IMCC13023]
Length = 815
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 49 KYQSLAKAAEEFKFYL----EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
K+ + E +F L E CL + +++ PT GKT+VGE I L QK
Sbjct: 23 KFPEFELFSHELRFPLDDFQEQACLALESGAGVLVAAPTGAGKTIVGEFAIHLALAKGQK 82
Query: 105 SAIFILPYISLVHEKYQSLA 124
+ P +L ++K+ LA
Sbjct: 83 -VFYTTPIKALSNQKFAELA 101
>gi|195328689|ref|XP_002031047.1| GM24241 [Drosophila sechellia]
gi|194119990|gb|EDW42033.1| GM24241 [Drosophila sechellia]
Length = 2181
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQSLAKA 126
CL N N +L PT GKT+V EI I + L K ++I P +LV E+ +
Sbjct: 1345 CLYHTDN-NVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQR 1403
Query: 127 AEEFKFYLEVLE 138
+ L+V+E
Sbjct: 1404 FQRSSLGLKVVE 1415
>gi|409075084|gb|EKM75469.1| hypothetical protein AGABI1DRAFT_46451 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1001
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 14 SGGKTLVGEILIMKELKIKQKSAIFILP-YISLVHEKYQSLAKAAEEFKFYLEG----KC 68
+G T G L EL+ + + + + P Y K+ AK E++F L+
Sbjct: 27 TGTTTEAGSRL---ELRHQVRHQVAVPPGYNYTPIAKHVPPAKPDREYEFELDPFQRVSV 83
Query: 69 LEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ +N++ ++S TS GKT+V E I + L KQ+ I+ P +L ++KY+ + K
Sbjct: 84 YAIQRNESVLVSAHTSAGKTVVAEYAIAQCLNRKQR-VIYTSPIKALSNQKYRDMLK 139
>gi|387928872|ref|ZP_10131549.1| hypothetical protein PB1_10619 [Bacillus methanolicus PB1]
gi|387585690|gb|EIJ78014.1| hypothetical protein PB1_10619 [Bacillus methanolicus PB1]
Length = 809
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 8 VLSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEKYQSLAK 55
LSIPT GGKTL +K K+ +K+ I+++PY +++ + + + K
Sbjct: 272 TLSIPTGGGKTLASLRYALKHAKLYKKNHIIYVVPYTTIIEQNAEEVRK 320
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSA-IFILPYISLVHEKYQSLAK 125
LSIPT GGKTL +K K+ +K+ I+++PY +++ + + + K
Sbjct: 272 TLSIPTGGGKTLASLRYALKHAKLYKKNHIIYVVPYTTIIEQNAEEVRK 320
>gi|195570614|ref|XP_002103302.1| GD19029 [Drosophila simulans]
gi|194199229|gb|EDX12805.1| GD19029 [Drosophila simulans]
Length = 2182
Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQSLAKA 126
CL N N +L PT GKT+V EI I + L K ++I P +LV E+ +
Sbjct: 1346 CLYHTDN-NVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQR 1404
Query: 127 AEEFKFYLEVLE 138
+ L+V+E
Sbjct: 1405 FQRSSLGLKVVE 1416
>gi|24647182|ref|NP_650472.2| CG5205 [Drosophila melanogaster]
gi|23171378|gb|AAF55204.2| CG5205 [Drosophila melanogaster]
Length = 2183
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQSLAKA 126
CL N N +L PT GKT+V EI I + L K ++I P +LV E+ +
Sbjct: 1347 CLYHTDN-NVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQR 1405
Query: 127 AEEFKFYLEVLE 138
+ L+V+E
Sbjct: 1406 FQRSSLGLKVVE 1417
>gi|291279950|ref|YP_003496785.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
SSM1]
gi|290754652|dbj|BAI81029.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
SSM1]
Length = 927
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 51 QSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
+L K E + + K +++N +N +++ PT+ GKTL + I++++ + A+++
Sbjct: 44 DALNKNGIENLYLHQAKAYRLLKNGENILITTPTASGKTLCYNLPILEDILENRAKALYL 103
Query: 110 LPYISLVHEKYQSL---AKAAEEFKFYLEVLE 138
P +L +++ + L AK +FK +++L+
Sbjct: 104 FPMKALGYDQKEKLLEIAKFIPDFKLNVQILD 135
>gi|226940484|ref|YP_002795558.1| Superfamily II helicase [Laribacter hongkongensis HLHK9]
gi|226715411|gb|ACO74549.1| Superfamily II helicase [Laribacter hongkongensis HLHK9]
Length = 713
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 25 IMKELKIKQKSAIFILPYIS-----------LVHEKYQSLAKAAEEFKFYLEGKCLEMI- 72
+ + L + A+ + PYI+ L +E ++ + +L+ +I
Sbjct: 57 VEQSLLLNMVRAVGLFPYITPHLSKMALSDRLAYEAHRVEGVEQDMVFHHLQAHVFSLIM 116
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
Q +N VLS TS GK+LV + ++ + + K + I+P I+L+ E + L K ++F
Sbjct: 117 QGRNVVLSASTSVGKSLVIDAVLAQR---RFKKVVVIVPTIALIDETRRRLVKRFKDFNL 173
Score = 35.0 bits (79), Expect = 9.1, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++Q +N VLS TS GK+LV + ++ + + K + I+P I+L+ E + L K ++F
Sbjct: 115 IMQGRNVVLSASTSVGKSLVIDAVLAQR---RFKKVVVIVPTIALIDETRRRLVKRFKDF 171
Query: 61 KF 62
Sbjct: 172 NL 173
>gi|350289218|gb|EGZ70443.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 1547
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 69 LEMIQ---NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
LEM + +N ++++ T GKT V + I +EL+ + K F+ P ++L +++Q L
Sbjct: 81 LEMFEASLKQNIIVAMDTGSGKTQVAVLRIARELEQRDKRIWFLTPTVALARQQHQVL 138
>gi|226467528|emb|CAX69640.1| putative RIKEN cDNA 2610528A15 [Schistosoma japonicum]
Length = 615
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 57 AEEFKFYLEGKCLEMI----QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A F F L+ + I N++ +LS TS GKT+V E I L+ KQ+ I+ P
Sbjct: 114 ARTFPFTLDAFQQQAIICIDNNQSVLLSAHTSAGKTVVAEYAIATALREKQR-VIYTTPI 172
Query: 113 ISLVHEKYQSLAKAAEE 129
+L ++KY+ +A E
Sbjct: 173 KALSNQKYREFFEAFPE 189
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
N++ +LS TS GKT+V E I L+ KQ+ I+ P +L ++KY+ +A E
Sbjct: 135 NQSVLLSAHTSAGKTVVAEYAIATALREKQR-VIYTTPIKALSNQKYREFFEAFPE 189
>gi|126465121|ref|YP_001040230.1| DEAD/DEAH box helicase [Staphylothermus marinus F1]
gi|126013944|gb|ABN69322.1| DEAD/DEAH box helicase domain protein [Staphylothermus marinus F1]
Length = 716
Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+ + N ++S PT+ GKTL+GE+ ++ K ++++P +L EKY
Sbjct: 39 LFNSMNLLVSAPTASGKTLIGEMALVHNTINKDMIGLYLVPLRALASEKY 88
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+ + N ++S PT+ GKTL+GE+ ++ K ++++P +L EKY
Sbjct: 39 LFNSMNLLVSAPTASGKTLIGEMALVHNTINKDMIGLYLVPLRALASEKY 88
>gi|448359341|ref|ZP_21548000.1| helicase, partial [Natrialba chahannaoensis JCM 10990]
gi|445643584|gb|ELY96629.1| helicase, partial [Natrialba chahannaoensis JCM 10990]
Length = 485
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 66 GKCLEMIQ--NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
G+ E ++ NK +++PT GKTL G +K +IK I+ LPY S++ +
Sbjct: 277 GRAEEFLESGNKLARITLPTGFGKTLTGTQTALKVAQIKGGRVIYALPYTSIIDQ 331
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 48
NK +++PT GKTL G +K +IK I+ LPY S++ +
Sbjct: 287 NKLARITLPTGFGKTLTGTQTALKVAQIKGGRVIYALPYTSIIDQ 331
>gi|282164949|ref|YP_003357334.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
gi|282157263|dbj|BAI62351.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
Length = 997
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 134
N V+S PT+ GKT++ E +++EL K ++ +FI P +L +EK + F +
Sbjct: 41 NVVVSAPTASGKTVLAEAAMVRELGKAERGKILFIAPLRALTNEKESEWKRVLSTLGFKV 100
Query: 135 EVL 137
V+
Sbjct: 101 YVV 103
Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEK 49
N V+S PT+ GKT++ E +++EL K ++ +FI P +L +EK
Sbjct: 41 NVVVSAPTASGKTVLAEAAMVRELGKAERGKILFIAPLRALTNEK 85
>gi|284991142|ref|YP_003409696.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064387|gb|ADB75325.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 951
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
C + + ++ PT GKT+VGE + K L + + A + P +L ++KY LA+
Sbjct: 39 CEALDEGSGVLVCAPTGAGKTVVGEFAVHKALA-EGRKAFYTTPIKALSNQKYNDLAERY 97
Query: 128 EEFK 131
E K
Sbjct: 98 GEGK 101
>gi|84616889|emb|CAJ13783.1| virulence associated protein [Desulfococcus multivorans]
Length = 1040
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 63 YLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQ 121
+L GK ++++ ++ ++ +PTS GKT E+++ ++ S AI I P+ +L HE
Sbjct: 249 HLLGKA-DVLKGESSIVQMPTSAGKTKATELILRSAFLAERVSLAIIIAPFRALCHEIKN 307
Query: 122 SLAKA 126
SL +A
Sbjct: 308 SLVEA 312
>gi|224002745|ref|XP_002291044.1| hypothetical protein THAPSDRAFT_262824 [Thalassiosira pseudonana
CCMP1335]
gi|220972820|gb|EED91151.1| hypothetical protein THAPSDRAFT_262824, partial [Thalassiosira
pseudonana CCMP1335]
Length = 1128
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLE----MIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
+ E Y +L F F L+ L ++ N+N ++ PT GKT+VGE+ + L+
Sbjct: 68 LQEAYDTLQP---HFSFPLDSWQLSAGSALLNNQNVIVCAPTGAGKTVVGEMALRIALE- 123
Query: 102 KQKSAIFILPYISLVHEKYQSL 123
+ AI+ P +L ++K+ +
Sbjct: 124 RDTKAIYTTPLKALSNQKFGEM 145
>gi|328353048|emb|CCA39446.1| ATP-dependent RNA helicase DOB1 [Komagataella pastoris CBS 7435]
Length = 1064
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
C++ +N++ ++S TS GKT+V E I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 154 CID--RNESVLVSAHTSAGKTVVAEYAIAQSLREKQR-VIYTSPIKALSNQKYREL 206
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+N++ ++S TS GKT+V E I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 157 RNESVLVSAHTSAGKTVVAEYAIAQSLREKQR-VIYTSPIKALSNQKYREL 206
>gi|219124611|ref|XP_002182593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405939|gb|EEC45880.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 851
Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+KN + ++P GGK+ V E+ ++ +K A+ ++PY L + Y S A +F+
Sbjct: 595 SKNVIANLPCGGGKSAVWEVTAYARHRVGLTRKCAVVVVPYKFLAYNHYHS---AKSKFE 651
Query: 62 FYLEGKCLEMIQNKN-CVLSIPTSGGKTLVGEILIM 96
L+G ++M+++ C +PT ++ IL +
Sbjct: 652 L-LDGVSVDMLESSAVCSNQVPTILKSDVLPHILFL 686
>gi|353236414|emb|CCA68409.1| related to helicases [Piriformospora indica DSM 11827]
Length = 997
Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSL 53
+ + KNC++S PT+ GK+++ ++ ++ L+ + S AI+I P +L ++ +L
Sbjct: 253 VAEGKNCIVSTPTASGKSVIYQVPALRFLEADRSSTAIYIYPTKALAQDQRLAL 306
Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSL 123
+ KNC++S PT+ GK+++ ++ ++ L+ + S AI+I P +L ++ +L
Sbjct: 255 EGKNCIVSTPTASGKSVIYQVPALRFLEADRSSTAIYIYPTKALAQDQRLAL 306
>gi|29833237|ref|NP_827871.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
gi|29610359|dbj|BAC74406.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
MA-4680]
Length = 937
Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 52 SLAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
+LA E + F L+ +E Q K +++ PT GKT+VGE + L+ + K
Sbjct: 24 ALAPFREMYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQ-QGKKCF 82
Query: 108 FILPYISLVHEKYQSLAK 125
+ P +L ++KY LA+
Sbjct: 83 YTTPIKALSNQKYADLAR 100
>gi|354609904|ref|ZP_09027860.1| ski2-type helicase [Halobacterium sp. DL1]
gi|353194724|gb|EHB60226.1| ski2-type helicase [Halobacterium sp. DL1]
Length = 787
Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ ++ V S+PT+ GKTL+ E+ ++ ++ + +A++I+P +L EK +A E+F
Sbjct: 39 EGRSLVASVPTASGKTLIAELAMLSAIE-RGGTALYIVPLRALAGEKATEF-EAFEQF 94
Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+ ++ V S+PT+ GKTL+ E+ ++ ++ + +A++I+P +L EK +A E+F
Sbjct: 39 EGRSLVASVPTASGKTLIAELAMLSAIE-RGGTALYIVPLRALAGEKATEF-EAFEQF 94
>gi|307354249|ref|YP_003895300.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157482|gb|ADN36862.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 672
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 33/55 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ K+ ++ T+ GKT +GE+ +K + + +F++P ++L ++KY K
Sbjct: 220 LLEGKDQLIVAATASGKTFIGEMAGVKNFLENRGNTLFLVPLVALANQKYSRFTK 274
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 33/55 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ K+ ++ T+ GKT +GE+ +K + + +F++P ++L ++KY K
Sbjct: 220 LLEGKDQLIVAATASGKTFIGEMAGVKNFLENRGNTLFLVPLVALANQKYSRFTK 274
>gi|17864608|ref|NP_524929.1| lethal (2) 35Df [Drosophila melanogaster]
gi|5052566|gb|AAD38613.1|AF145638_1 l.2.35Df [Drosophila melanogaster]
gi|7298249|gb|AAF53481.1| lethal (2) 35Df [Drosophila melanogaster]
gi|220943740|gb|ACL84413.1| l(2)35Df-PA [synthetic construct]
Length = 1055
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L + + + I N VL S TS GKT+V E I K L KQ+ I+ P
Sbjct: 145 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYTTPI 203
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++K++ +EFK
Sbjct: 204 KALSNQKFREF---TDEFK 219
>gi|408383089|ref|ZP_11180628.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
formicicum DSM 3637]
gi|407814197|gb|EKF84829.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
formicicum DSM 3637]
Length = 693
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
+VH+ Y + + K ++ L+ + +N +++IPT+ GKTL+G + ++ + +
Sbjct: 13 IVHDSYPQIEELNPAQKAVVDAGLLD--EKENYIIAIPTASGKTLLGVLAALRTI-LDGG 69
Query: 105 SAIFILPYISLVHEKYQSLAKAAE 128
++ +P +S+ +EK + K E
Sbjct: 70 KVVYAVPLLSIQNEKVKEFKKFEE 93
>gi|442321980|ref|YP_007362001.1| DEAD/DEAH box helicase [Myxococcus stipitatus DSM 14675]
gi|441489622|gb|AGC46317.1| DEAD/DEAH box helicase [Myxococcus stipitatus DSM 14675]
Length = 848
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 42 YISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI 101
++ V SL A EE LE++ K+ L PT GK+LV L K +
Sbjct: 31 FVGYVSSNGLSLYPAQEE-------AILEILAGKHLFLKTPTGSGKSLVATALHFKAMA- 82
Query: 102 KQKSAIFILPYISLVHEKYQSLAKA 126
+ K + + P +LV+EK+ +L +A
Sbjct: 83 EGKVSFYTCPIKALVNEKFFALCEA 107
>gi|429328978|gb|AFZ80737.1| DEAD/DEAH box helicase domain-containing protein [Babesia equi]
Length = 1878
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ-KSAIFILPYISLVHEKYQ----SLAKA 56
+ + N ++ PT GKTLV E+ +++ K A++I P +L +E+Y+ K
Sbjct: 1144 MSDDNILVGAPTGSGKTLVAELAMLRLFDTSPGKKAVYIAPLKALAYERYRDWHSKFGKR 1203
Query: 57 AEEFKFYLEGKCLEMIQNKNCVLSIP 82
EF + + E+I N + +++ P
Sbjct: 1204 VIEFTGDSKSQTTEVI-NSDIIITTP 1228
>gi|357038404|ref|ZP_09100202.1| metal dependent phosphohydrolase [Desulfotomaculum gibsoniae DSM
7213]
gi|355359979|gb|EHG07739.1| metal dependent phosphohydrolase [Desulfotomaculum gibsoniae DSM
7213]
Length = 733
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 9 LSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHE 48
L++PT GGKTL +K L+ QK I+++PY S++ +
Sbjct: 239 LTVPTGGGKTLSSLSFALKHALQYGQKRVIYVIPYTSIIEQ 279
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 79 LSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHE 118
L++PT GGKTL +K L+ QK I+++PY S++ +
Sbjct: 239 LTVPTGGGKTLSSLSFALKHALQYGQKRVIYVIPYTSIIEQ 279
>gi|449018272|dbj|BAM81674.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 1214
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
++Q+++ V+S+PT GKT++GE + LK K A + P +L ++K+
Sbjct: 108 VLQSRSVVVSVPTGSGKTVIGEAALAIALK-KGMRAFYTTPLKALSNQKF 156
Score = 35.8 bits (81), Expect = 6.3, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
++Q+++ V+S+PT GKT++GE + LK K A + P +L ++K+
Sbjct: 108 VLQSRSVVVSVPTGSGKTVIGEAALAIALK-KGMRAFYTTPLKALSNQKF 156
>gi|435849090|ref|YP_007311340.1| superfamily II helicase [Natronococcus occultus SP4]
gi|433675358|gb|AGB39550.1| superfamily II helicase [Natronococcus occultus SP4]
Length = 805
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 54 AKAAEEF-KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A A EEF + E + ++N V S PT+ GKT + E+ I K L + +A+FI P
Sbjct: 13 AFAFEEFNRMQREALPALLESDENVVASAPTASGKTALAELAICKTLA-EDGTALFIAPM 71
Query: 113 ISLVHEK 119
+L +EK
Sbjct: 72 RALTNEK 78
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++N V S PT+ GKT + E+ I K L + +A+FI P +L +EK
Sbjct: 34 DENVVASAPTASGKTALAELAICKTLA-EDGTALFIAPMRALTNEK 78
>gi|38233827|ref|NP_939594.1| helicase [Corynebacterium diphtheriae NCTC 13129]
gi|38200088|emb|CAE49768.1| Putative helicase [Corynebacterium diphtheriae]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|419860816|ref|ZP_14383456.1| putative helicase [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
gi|387982500|gb|EIK56001.1| putative helicase [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|376254319|ref|YP_005142778.1| putative helicase [Corynebacterium diphtheriae PW8]
gi|372117403|gb|AEX69873.1| putative helicase [Corynebacterium diphtheriae PW8]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|376293256|ref|YP_005164930.1| putative helicase [Corynebacterium diphtheriae HC02]
gi|372110579|gb|AEX76639.1| putative helicase [Corynebacterium diphtheriae HC02]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|376242829|ref|YP_005133681.1| putative helicase [Corynebacterium diphtheriae CDCE 8392]
gi|372106071|gb|AEX72133.1| putative helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|376290436|ref|YP_005162683.1| putative helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372103832|gb|AEX67429.1| putative helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|376287741|ref|YP_005160307.1| putative helicase [Corynebacterium diphtheriae BH8]
gi|371585075|gb|AEX48740.1| putative helicase [Corynebacterium diphtheriae BH8]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|375293114|ref|YP_005127653.1| putative helicase [Corynebacterium diphtheriae INCA 402]
gi|376248519|ref|YP_005140463.1| putative helicase [Corynebacterium diphtheriae HC04]
gi|371582785|gb|AEX46451.1| putative helicase [Corynebacterium diphtheriae INCA 402]
gi|372115087|gb|AEX81145.1| putative helicase [Corynebacterium diphtheriae HC04]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|375290896|ref|YP_005125436.1| putative helicase [Corynebacterium diphtheriae 241]
gi|376245728|ref|YP_005135967.1| putative helicase [Corynebacterium diphtheriae HC01]
gi|376251310|ref|YP_005138191.1| putative helicase [Corynebacterium diphtheriae HC03]
gi|376257127|ref|YP_005145018.1| putative helicase [Corynebacterium diphtheriae VA01]
gi|371580567|gb|AEX44234.1| putative helicase [Corynebacterium diphtheriae 241]
gi|372108358|gb|AEX74419.1| putative helicase [Corynebacterium diphtheriae HC01]
gi|372112814|gb|AEX78873.1| putative helicase [Corynebacterium diphtheriae HC03]
gi|372119644|gb|AEX83378.1| putative helicase [Corynebacterium diphtheriae VA01]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|376284742|ref|YP_005157952.1| putative helicase [Corynebacterium diphtheriae 31A]
gi|371578257|gb|AEX41925.1| putative helicase [Corynebacterium diphtheriae 31A]
Length = 930
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 48 EKYQSLAKAAEEF---KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK 104
E + S A ++F +F + G C + + ++ PT GKT+VGE + L I Q+
Sbjct: 8 ESHLSYFAARQKFPLDEFQIRG-CQAVESGRGVLVCAPTGAGKTIVGEFAV--SLAISQQ 64
Query: 105 SAIF-ILPYISLVHEKYQSLAKAAEEFK 131
+ F P +L ++K+ L KA E K
Sbjct: 65 TKCFYTTPIKALSNQKFHDLVKAHGEDK 92
>gi|91200625|emb|CAJ73675.1| hypothetical protein kuste2922 [Candidatus Kuenenia
stuttgartiensis]
Length = 841
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 9 LSIPTSGGKTLVGEILIMKELKIKQ-KSAIFILPYISLVHEKYQSLAK 55
L+IPT GGKT + L +K ++ ++ K ++ P+I+L+ + Y+ L K
Sbjct: 322 LNIPTGGGKTNISLRLALKIMEKREIKKLFYVFPFINLIEQSYEVLGK 369
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 79 LSIPTSGGKTLVGEILIMKELKIKQ-KSAIFILPYISLVHEKYQSLAK 125
L+IPT GGKT + L +K ++ ++ K ++ P+I+L+ + Y+ L K
Sbjct: 322 LNIPTGGGKTNISLRLALKIMEKREIKKLFYVFPFINLIEQSYEVLGK 369
>gi|448683127|ref|ZP_21692101.1| Pre-mRNA splicing helicase [Haloarcula japonica DSM 6131]
gi|445784112|gb|EMA34930.1| Pre-mRNA splicing helicase [Haloarcula japonica DSM 6131]
Length = 789
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 58 EEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
EEF ++ L + N+ N V+S PT+ GKT + E+ I K L + +A+F+ P +L
Sbjct: 17 EEFN-RMQSAALPALLNRDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRAL 74
Query: 116 VHEK 119
+EK
Sbjct: 75 TNEK 78
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V+S PT+ GKT + E+ I K L + +A+F+ P +L +EK
Sbjct: 33 RDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRALTNEK 78
>gi|448663858|ref|ZP_21683844.1| Pre-mRNA splicing helicase [Haloarcula amylolytica JCM 13557]
gi|445775174|gb|EMA26186.1| Pre-mRNA splicing helicase [Haloarcula amylolytica JCM 13557]
Length = 789
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 58 EEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
EEF ++ L + N+ N V+S PT+ GKT + E+ I K L + +A+F+ P +L
Sbjct: 17 EEFN-RMQSAALPALLNRDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRAL 74
Query: 116 VHEK 119
+EK
Sbjct: 75 TNEK 78
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V+S PT+ GKT + E+ I K L + +A+F+ P +L +EK
Sbjct: 33 RDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRALTNEK 78
>gi|448648866|ref|ZP_21679931.1| Pre-mRNA splicing helicase [Haloarcula californiae ATCC 33799]
gi|445774610|gb|EMA25626.1| Pre-mRNA splicing helicase [Haloarcula californiae ATCC 33799]
Length = 789
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 58 EEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
EEF ++ L + N+ N V+S PT+ GKT + E+ I K L + +A+F+ P +L
Sbjct: 17 EEFN-RMQSAALPALLNRDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRAL 74
Query: 116 VHEK 119
+EK
Sbjct: 75 TNEK 78
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V+S PT+ GKT + E+ I K L + +A+F+ P +L +EK
Sbjct: 33 RDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRALTNEK 78
>gi|448639121|ref|ZP_21676625.1| Pre-mRNA splicing helicase [Haloarcula sinaiiensis ATCC 33800]
gi|445762958|gb|EMA14166.1| Pre-mRNA splicing helicase [Haloarcula sinaiiensis ATCC 33800]
Length = 789
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 58 EEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
EEF ++ L + N+ N V+S PT+ GKT + E+ I K L + +A+F+ P +L
Sbjct: 17 EEFN-RMQSAALPALLNRDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRAL 74
Query: 116 VHEK 119
+EK
Sbjct: 75 TNEK 78
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V+S PT+ GKT + E+ I K L + +A+F+ P +L +EK
Sbjct: 33 RDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRALTNEK 78
>gi|448629855|ref|ZP_21672750.1| Pre-mRNA splicing helicase [Haloarcula vallismortis ATCC 29715]
gi|445757276|gb|EMA08631.1| Pre-mRNA splicing helicase [Haloarcula vallismortis ATCC 29715]
Length = 789
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 58 EEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
EEF ++ L + N+ N V+S PT+ GKT + E+ I K L + +A+F+ P +L
Sbjct: 17 EEFN-RMQSAALPALLNRDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRAL 74
Query: 116 VHEK 119
+EK
Sbjct: 75 TNEK 78
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V+S PT+ GKT + E+ I K L + +A+F+ P +L +EK
Sbjct: 33 RDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRALTNEK 78
>gi|55379550|ref|YP_137400.1| Pre-mRNA splicing helicase [Haloarcula marismortui ATCC 43049]
gi|55232275|gb|AAV47694.1| Pre-mRNA splicing helicase [Haloarcula marismortui ATCC 43049]
Length = 823
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 58 EEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
EEF ++ L + N+ N V+S PT+ GKT + E+ I K L + +A+F+ P +L
Sbjct: 51 EEFN-RMQSAALPALLNRDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRAL 108
Query: 116 VHEK 119
+EK
Sbjct: 109 TNEK 112
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V+S PT+ GKT + E+ I K L + +A+F+ P +L +EK
Sbjct: 67 RDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRALTNEK 112
>gi|344210521|ref|YP_004794841.1| pre-mRNA splicing helicase [Haloarcula hispanica ATCC 33960]
gi|343781876|gb|AEM55853.1| pre-mRNA splicing helicase [Haloarcula hispanica ATCC 33960]
Length = 789
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 58 EEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
EEF ++ L + N+ N V+S PT+ GKT + E+ I K L + +A+F+ P +L
Sbjct: 17 EEFN-RMQSAALPALLNRDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRAL 74
Query: 116 VHEK 119
+EK
Sbjct: 75 TNEK 78
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++ N V+S PT+ GKT + E+ I K L + +A+F+ P +L +EK
Sbjct: 33 RDDNVVVSAPTASGKTALAELAICKTLA-EDGTALFLAPLRALTNEK 78
>gi|195475478|ref|XP_002090011.1| GE21122 [Drosophila yakuba]
gi|194176112|gb|EDW89723.1| GE21122 [Drosophila yakuba]
Length = 1047
Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L + + + I N VL S TS GKT+V E I K L KQ+ I+ P
Sbjct: 137 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYTTPI 195
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++K++ +EFK
Sbjct: 196 KALSNQKFREF---TDEFK 211
>gi|397779523|ref|YP_006543996.1| archaea-specific helicase [Methanoculleus bourgensis MS2]
gi|396938025|emb|CCJ35280.1| archaea-specific helicase [Methanoculleus bourgensis MS2]
Length = 669
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
+++ ++ ++ T+ GKT +GE+ MK + +F++P ++L ++KYQ
Sbjct: 219 LLEGQHLLVVSATASGKTFIGEMAGMKNFLEGRGRMLFLVPLVALANQKYQ 269
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 51
+++ ++ ++ T+ GKT +GE+ MK + +F++P ++L ++KYQ
Sbjct: 219 LLEGQHLLVVSATASGKTFIGEMAGMKNFLEGRGRMLFLVPLVALANQKYQ 269
>gi|357402751|ref|YP_004914676.1| helicase helY [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386358824|ref|YP_006057070.1| DSH domain-containing protein [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337769160|emb|CCB77873.1| putative helicase helY [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365809332|gb|AEW97548.1| DSH domain protein [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 947
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 62 FYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
F +E C M K +++ PT GKT+VGE + L+ +K + P +L ++KY
Sbjct: 40 FQIEA-CQAMEAGKGVLVAAPTGSGKTIVGEFAVHLALRAGRK-CFYTTPIKALSNQKYA 97
Query: 122 SLAK 125
L K
Sbjct: 98 DLVK 101
>gi|328707211|ref|XP_003243333.1| PREDICTED: helicase POLQ-like [Acyrthosiphon pisum]
Length = 65
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 25 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE------GKCLEMIQNKN 76
++KEL + ++ IFIL +++LV EK QSL ++F +E GK L+ I N N
Sbjct: 1 MLKELIVYVRNVIFILQHVALVQEKVQSLCPFGLNWEFNVEEYVGGKGKHLQFIVNVN 58
>gi|308811917|ref|XP_003083266.1| Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily (ISS)
[Ostreococcus tauri]
gi|116055145|emb|CAL57541.1| Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily (ISS)
[Ostreococcus tauri]
Length = 1038
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 67 KCLEMI--QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSL 123
+CL + +++ V + PT GK+ V + L+ + L A+ +LPY++LV E+ +L
Sbjct: 265 ECLSRVARTSRSLVYTAPTGAGKSRVADALLEETLASDGGGRALVVLPYVALVRERAMAL 324
Query: 124 AK 125
AK
Sbjct: 325 AK 326
>gi|261345466|ref|ZP_05973110.1| putative DEAD/DEAH box helicase [Providencia rustigianii DSM 4541]
gi|282566513|gb|EFB72048.1| putative DEAD/DEAH box helicase [Providencia rustigianii DSM 4541]
Length = 713
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++Q +N VLS TS GK+LV + ++ + + K + I+P I+L+ E + L K ++F
Sbjct: 115 IMQGRNVVLSASTSVGKSLVIDAVLAQR---RFKKVVVIVPTIALIDETRRRLVKRFKDF 171
Query: 61 KFYLEGKCLEMIQNKNCVL 79
+I+ N L
Sbjct: 172 NLITHPSQESVIETTNVYL 190
Score = 35.0 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++Q +N VLS TS GK+LV + ++ + + K + I+P I+L+ E + L K ++F
Sbjct: 115 IMQGRNVVLSASTSVGKSLVIDAVLAQR---RFKKVVVIVPTIALIDETRRRLVKRFKDF 171
Query: 131 KF 132
Sbjct: 172 NL 173
>gi|158335611|ref|YP_001516783.1| type III restriction enzyme, res subunit [Acaryochloris marina
MBIC11017]
gi|158305852|gb|ABW27469.1| type III restriction enzyme, res subunit [Acaryochloris marina
MBIC11017]
Length = 490
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+N+ V+ +PT+ GKT + +++I + Q+S + +P + L+H+ Y L A + +
Sbjct: 92 ENRRGVVVLPTAAGKTYLAQLVI----QATQRSTLIAVPTLDLMHQWYAHLVAAFPDAEI 147
Query: 63 YLEG 66
L G
Sbjct: 148 GLLG 151
>gi|260946459|ref|XP_002617527.1| hypothetical protein CLUG_02971 [Clavispora lusitaniae ATCC 42720]
gi|238849381|gb|EEQ38845.1| hypothetical protein CLUG_02971 [Clavispora lusitaniae ATCC 42720]
Length = 1066
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
PYI + K +S A+ + F L+ C++ ++++ ++S TS GKT+V E
Sbjct: 125 PYIPIGEHKRKSEART---YPFTLDPFQDTAISCID--RDESVLVSAHTSAGKTVVAEYA 179
Query: 95 IMKELKIKQKSAIFILPYISLVHEKYQSL 123
I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 180 IAQSLRDKQR-VIYTSPIKALSNQKYREL 207
>gi|194857599|ref|XP_001968990.1| GG25171 [Drosophila erecta]
gi|190660857|gb|EDV58049.1| GG25171 [Drosophila erecta]
Length = 1051
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L + + + I N VL S TS GKT+V E I K L KQ+ I+ P
Sbjct: 141 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYTTPI 199
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++K++ +EFK
Sbjct: 200 KALSNQKFREF---TDEFK 215
>gi|410459794|ref|ZP_11313501.1| hypothetical protein BAZO_11229 [Bacillus azotoformans LMG 9581]
gi|409929155|gb|EKN66243.1| hypothetical protein BAZO_11229 [Bacillus azotoformans LMG 9581]
Length = 810
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY-------------LEGKCLEMIQNKNCV--LSIPTS 84
+ Y L YQ L K +K + + +C + +N + + LSIPT
Sbjct: 220 VDYQELFDTYYQRLMKKMNSYKSHPKANTPINLLRTEMSNQCEKFAENPSGIYTLSIPTG 279
Query: 85 GGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAK 125
GGKTL +K +K +K I+++P+ +++ + + + K
Sbjct: 280 GGKTLASLRYALKHAIKYNKKRIIYVVPFTTIIEQNAEEVRK 321
>gi|405973895|gb|EKC38584.1| Superkiller viralicidic activity 2-like 2 [Crassostrea gigas]
Length = 1025
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 53 LAKAAEEFKFYLEG------KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA 106
+ K A+E+ F L+ CLE N++ ++S TS GKT+V I L+ KQ+
Sbjct: 110 MEKPAKEYPFILDPFQKEALLCLE--NNQSVLVSAHTSAGKTVVAVYAIAMSLRDKQR-V 166
Query: 107 IFILPYISLVHEKYQSLAKAAEEFK 131
I+ P +L ++KY+ L EEF+
Sbjct: 167 IYTSPIKALSNQKYREL---YEEFQ 188
>gi|15669591|ref|NP_248404.1| putative ATP dependent RNA helicase [Methanocaldococcus jannaschii
DSM 2661]
gi|41018435|sp|Q58796.1|Y1401_METJA RecName: Full=Probable ATP-dependent helicase MJ1401
gi|1592049|gb|AAB99409.1| putative ATP dependent RNA helicase [Methanocaldococcus jannaschii
DSM 2661]
Length = 808
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ + ++ TS GKTL+GE+ +K L K +F++P ++L ++KY + E+
Sbjct: 224 LLNGDDLLIISATSSGKTLIGELAGIKNLIKTGKKFLFLVPLVALANQKYLEFKERYEKL 283
Query: 131 KF 132
F
Sbjct: 284 GF 285
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 13 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
TS GKTL+GE+ +K L K +F++P ++L ++KY + E+ F
Sbjct: 236 TSSGKTLIGELAGIKNLIKTGKKFLFLVPLVALANQKYLEFKERYEKLGF 285
>gi|358056838|dbj|GAA97188.1| hypothetical protein E5Q_03864 [Mixia osmundae IAM 14324]
Length = 1720
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+N++ ++S TS GKT+V E I + L+ KQ+ I+ P +L ++KY+ +A
Sbjct: 825 RNESVLVSAHTSAGKTVVAEYAIAQCLRDKQR-VIYTSPIKALSNQKYREMA 875
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+N++ ++S TS GKT+V E I + L+ KQ+ I+ P +L ++KY+ +A
Sbjct: 825 RNESVLVSAHTSAGKTVVAEYAIAQCLRDKQR-VIYTSPIKALSNQKYREMA 875
>gi|221060246|ref|XP_002260768.1| DNA-directed DNA polymerase [Plasmodium knowlesi strain H]
gi|193810842|emb|CAQ42740.1| DNA-directed DNA polymerase, putative [Plasmodium knowlesi strain
H]
Length = 990
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
PTSGGKTLV EI +++ +K F+ P +L++EK K
Sbjct: 116 PTSGGKTLVAEIFAFEQMHRTEK-IFFLFPLNALINEKMNYFKK 158
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 82 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
PTSGGKTLV EI +++ +K F+ P +L++EK K
Sbjct: 116 PTSGGKTLVAEIFAFEQMHRTEK-IFFLFPLNALINEKMNYFKK 158
>gi|198473097|ref|XP_001356169.2| GA17990 [Drosophila pseudoobscura pseudoobscura]
gi|198139299|gb|EAL33229.2| GA17990 [Drosophila pseudoobscura pseudoobscura]
Length = 1057
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L + + + I N VL S TS GKT+V E I K L KQ+ I+ P
Sbjct: 147 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYTTPI 205
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++K++ +EFK
Sbjct: 206 KALSNQKFREF---TDEFK 221
>gi|242056171|ref|XP_002457231.1| hypothetical protein SORBIDRAFT_03g003740 [Sorghum bicolor]
gi|241929206|gb|EES02351.1| hypothetical protein SORBIDRAFT_03g003740 [Sorghum bicolor]
Length = 1004
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
CLE +N++ ++S TS GKT+V E I + KQ+ I+ P +L ++KY+ L++
Sbjct: 95 CLE--RNESVLVSAHTSAGKTVVAEYAIAMAFRDKQR-VIYTSPLKALSNQKYRELSQ 149
>gi|427725278|ref|YP_007072555.1| type III restriction protein res subunit [Leptolyngbya sp. PCC
7376]
gi|427356998|gb|AFY39721.1| type III restriction protein res subunit [Leptolyngbya sp. PCC
7376]
Length = 490
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56
N+ V+ +PT+ GKT + ++ I + +S + ++P + L+H+ Y+ L KA
Sbjct: 94 NRQGVVVLPTAAGKTYLAQLAI----ESTPRSTLILVPTLDLMHQWYEQLTKA 142
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126
N+ V+ +PT+ GKT + ++ I + +S + ++P + L+H+ Y+ L KA
Sbjct: 94 NRQGVVVLPTAAGKTYLAQLAI----ESTPRSTLILVPTLDLMHQWYEQLTKA 142
>gi|393222424|gb|EJD07908.1| antiviral helicase [Fomitiporia mediterranea MF3/22]
Length = 1000
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 54 AKAAEEFKFYLEG---KCLEMIQ-NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
AK E+KF L+ + IQ N++ ++S TS GKT+V E I + L+ KQ+ I+
Sbjct: 64 AKPVREYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVVAEYAIAQCLENKQR-VIYT 122
Query: 110 LPYISLVHEKYQSL 123
P +L ++KY+ +
Sbjct: 123 SPIKALSNQKYREM 136
>gi|357114316|ref|XP_003558946.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Brachypodium
distachyon]
Length = 1888
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 51 QSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIM----KELKIKQKS- 105
Q AEE + + + LE +++N + + T GKTL+ +LI K LK +K
Sbjct: 260 QRAKPVAEEQARHYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSICDKMLKENKKML 319
Query: 106 AIFILPYISLVHEKYQSLAKAAE 128
A+F++P + LV YQ L A+
Sbjct: 320 AVFLVPKVPLV---YQVLVMTAQ 339
>gi|15678832|ref|NP_275949.1| DNA helicase-like protein [Methanothermobacter thermautotrophicus
str. Delta H]
gi|18201992|sp|O26901.1|HELS_METTH RecName: Full=Putative ski2-type helicase
gi|2621900|gb|AAB85310.1| DNA helicase related protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 690
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
N +++IPT+ GKTL+G I +K + ++ I+ +P +S+ +EK + K E
Sbjct: 40 NYIIAIPTASGKTLLGIIAALKTV-MEGGRVIYTVPLLSIQNEKIKEFRKLEE 91
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
N +++IPT+ GKTL+G I +K + ++ I+ +P +S+ +EK + K E
Sbjct: 40 NYIIAIPTASGKTLLGIIAALKTV-MEGGRVIYTVPLLSIQNEKIKEFRKLEE 91
>gi|440298712|gb|ELP91343.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
[Entamoeba invadens IP1]
Length = 1776
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 1 MVQNKNCVLSIPTSG-GKTLVGEILIMKELKIKQKSA-IFILPYISLVHEKYQSLAKA 56
+V++ N V SG GKTL+ E+ IMK+LK +K A I+I P+ + +++L A
Sbjct: 1297 VVESNNSVYVGAHSGAGKTLIAELAIMKQLKTDEKRAVIYISPFEEDAQKAFEALQAA 1354
>gi|257387096|ref|YP_003176869.1| DEAD/DEAH box helicase [Halomicrobium mukohataei DSM 12286]
gi|257169403|gb|ACV47162.1| DEAD/DEAH box helicase domain protein [Halomicrobium mukohataei DSM
12286]
Length = 697
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 13 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
T+ GKTL+GE+ + + + +F++P ++L ++KY+S A+
Sbjct: 246 TATGKTLIGEMAGLDRVLNNKGKMLFLVPLVALANQKYESFAE 288
Score = 35.8 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 83 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
T+ GKTL+GE+ + + + +F++P ++L ++KY+S A+
Sbjct: 246 TATGKTLIGEMAGLDRVLNNKGKMLFLVPLVALANQKYESFAE 288
>gi|413947563|gb|AFW80212.1| hypothetical protein ZEAMMB73_030566 [Zea mays]
Length = 979
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
CLE +N++ ++S TS GKT+V E I + KQ+ I+ P +L ++KY+ L++
Sbjct: 95 CLE--RNESVLVSAHTSAGKTVVAEYAIAMAFRDKQR-VIYTSPLKALSNQKYRELSQ 149
>gi|300709521|ref|YP_003735335.1| ski2-like helicase [Halalkalicoccus jeotgali B3]
gi|448297709|ref|ZP_21487752.1| ski2-like helicase [Halalkalicoccus jeotgali B3]
gi|299123204|gb|ADJ13543.1| ski2-like helicase [Halalkalicoccus jeotgali B3]
gi|445578579|gb|ELY32982.1| ski2-like helicase [Halalkalicoccus jeotgali B3]
Length = 763
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+I ++ V S+PT+ GKTL+ E+ ++ ++ + A++I+P +L EK + +
Sbjct: 37 VIDGESVVASVPTASGKTLIAELAMLAAIE-RGGKALYIVPLRALASEKKREFER 90
>gi|448725651|ref|ZP_21708098.1| DEAD/DEAH box helicase domain-containing protein [Halococcus
morrhuae DSM 1307]
gi|445797875|gb|EMA48313.1| DEAD/DEAH box helicase domain-containing protein [Halococcus
morrhuae DSM 1307]
Length = 774
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 54 AKAAEEFKFYLEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 111
A A EEF ++ + L I N+ N V S PT+ GKT + E+ I K L +++FI P
Sbjct: 13 AFAFEEFN-RMQREALPAIMNRDENVVASAPTASGKTALAELAICKCLA-ADGTSLFIAP 70
Query: 112 YISLVHEK 119
+L +EK
Sbjct: 71 LRALTNEK 78
>gi|395768461|ref|ZP_10448976.1| helicase [Streptomyces acidiscabies 84-104]
Length = 934
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 48 EKYQSLAKAAEEFKFYLEG----KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
E+ +LA E ++F L+ C + K +++ PT GKT+VGE + L +
Sbjct: 20 EQATALAGFREMYEFGLDAFQIEACRALEAGKGVLVAAPTGSGKTIVGEFAVHLALG-QG 78
Query: 104 KSAIFILPYISLVHEKYQSLAK 125
K + P +L ++KY L +
Sbjct: 79 KKCFYTTPIKALSNQKYADLCR 100
>gi|294658372|ref|XP_460707.2| DEHA2F07986p [Debaryomyces hansenii CBS767]
gi|202953081|emb|CAG89047.2| DEHA2F07986p [Debaryomyces hansenii CBS767]
Length = 1151
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 29 LKIKQKSAIFIL--PYIS--LVHEKYQSLAKAAEEFKFYLEGKCLEMIQNK--NCVLSIP 82
L + QKS + P +S ++ EKY+S+ + K ++ + E I N NCV++ P
Sbjct: 119 LDVSQKSTLMSTNQPVLSTSILPEKYRSIFSFSHFNK--MQSESFETIYNSDHNCVINAP 176
Query: 83 TSGGKTLVGEILIMKELKIKQKS--AIFILPYISLVHEKY 120
T GKT++ E+ +++ + +++ P +L EKY
Sbjct: 177 TGSGKTVLFELAMLRLFYFSNTNNKVLYLAPSKALCAEKY 216
>gi|194758417|ref|XP_001961458.1| GF14920 [Drosophila ananassae]
gi|190615155|gb|EDV30679.1| GF14920 [Drosophila ananassae]
Length = 1047
Score = 35.8 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 57 AEEFKFYL---EGKCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L + + + I N VL S TS GKT+V E I K L KQ+ I+ P
Sbjct: 137 AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQR-VIYTTPI 195
Query: 113 ISLVHEKYQSLAKAAEEFK 131
+L ++K++ +EFK
Sbjct: 196 KALSNQKFREF---TDEFK 211
>gi|167382489|ref|XP_001736128.1| helicase [Entamoeba dispar SAW760]
gi|165901567|gb|EDR27645.1| helicase, putative [Entamoeba dispar SAW760]
Length = 808
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 60 FKF----YLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 115
FKF Y + + + +N++ ++ PT+ GKTL+ E I K + + K AI+I P +L
Sbjct: 51 FKFDLYDYQKQAIVHIERNQHVMVVAPTASGKTLLAEYAIAKSINM-LKRAIYISPTKAL 109
Query: 116 VHEKYQSLA 124
++KY +
Sbjct: 110 SNQKYHDFS 118
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+N++ ++ PT+ GKTL+ E I K + + K AI+I P +L ++KY +
Sbjct: 68 RNQHVMVVAPTASGKTLLAEYAIAKSINM-LKRAIYISPTKALSNQKYHDFS 118
>gi|88603744|ref|YP_503922.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
gi|88189206|gb|ABD42203.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
Length = 701
Score = 35.8 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 34/55 (61%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ K+ ++ T+ GKT +GE+ +K K+ +F++P ++L ++KY+ ++
Sbjct: 221 LLYGKDLLVVSATASGKTFIGEMAGLKNYLEKRGRVLFLVPLVALAYQKYERFSQ 275
Score = 35.4 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 34/55 (61%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ K+ ++ T+ GKT +GE+ +K K+ +F++P ++L ++KY+ ++
Sbjct: 221 LLYGKDLLVVSATASGKTFIGEMAGLKNYLEKRGRVLFLVPLVALAYQKYERFSQ 275
>gi|420142388|ref|ZP_14649998.1| hypothetical protein PACIG1_5514 [Pseudomonas aeruginosa CIG1]
gi|421161542|ref|ZP_15620484.1| hypothetical protein PABE173_4062 [Pseudomonas aeruginosa ATCC
25324]
gi|403244864|gb|EJY58710.1| hypothetical protein PACIG1_5514 [Pseudomonas aeruginosa CIG1]
gi|404539518|gb|EKA48993.1| hypothetical protein PABE173_4062 [Pseudomonas aeruginosa ATCC
25324]
Length = 1103
Score = 35.8 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 78 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
V+S PT GK+ + E+ I L ++ +F+ P +SLV + ++LA + + E+L
Sbjct: 323 VISFPTGAGKSTLSELKIATAL-LRNMKVVFLAPTLSLVDQTTRALANTFPNAEVHREIL 381
Query: 138 E 138
+
Sbjct: 382 D 382
>gi|229114507|ref|ZP_04243923.1| hypothetical protein bcere0017_8050 [Bacillus cereus Rock1-3]
gi|423381124|ref|ZP_17358408.1| hypothetical protein IC9_04477 [Bacillus cereus BAG1O-2]
gi|228668961|gb|EEL24387.1| hypothetical protein bcere0017_8050 [Bacillus cereus Rock1-3]
gi|401630033|gb|EJS47841.1| hypothetical protein IC9_04477 [Bacillus cereus BAG1O-2]
Length = 720
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMI--QNKNCVLSIPTSGGKT-LVGEILIM 96
L S + Y S +K E F+ E K L + + KN ++S PTS GK+ L+ EI+ +
Sbjct: 82 LDTTSEIRSAYHS-SKKLENITFHKEQKILANLIAEEKNLIVSAPTSFGKSLLIQEIISL 140
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
K K+ + I P ++L++E SL K + +
Sbjct: 141 N----KYKNILIIQPTLALINETRVSLRKFSNNYN 171
>gi|156839586|ref|XP_001643482.1| hypothetical protein Kpol_489p5 [Vanderwaltozyma polyspora DSM
70294]
gi|156114095|gb|EDO15624.1| hypothetical protein Kpol_489p5 [Vanderwaltozyma polyspora DSM
70294]
Length = 1048
Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQS 52
++NCV+S PT GKT++ E+ I++ L+ SA ++I P SL +E+ ++
Sbjct: 13 DENCVISSPTGSGKTVLFELAILRLLRDNNYSADNIKILYIAPTKSLCYEQSKN 66
Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQS 122
++NCV+S PT GKT++ E+ I++ L+ SA ++I P SL +E+ ++
Sbjct: 13 DENCVISSPTGSGKTVLFELAILRLLRDNNYSADNIKILYIAPTKSLCYEQSKN 66
>gi|448315589|ref|ZP_21505230.1| DEAD/DEAH box helicase [Natronococcus jeotgali DSM 18795]
gi|445610961|gb|ELY64724.1| DEAD/DEAH box helicase [Natronococcus jeotgali DSM 18795]
Length = 803
Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 54 AKAAEEF-KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A A EEF + E + ++N V S PT+ GKT + E+ I K L + +A+FI P
Sbjct: 13 AFAFEEFNRMQREALPALLESDENVVASAPTASGKTALAELAICKTLS-EGGTALFIAPM 71
Query: 113 ISLVHEK 119
+L +EK
Sbjct: 72 RALTNEK 78
Score = 35.4 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
++N V S PT+ GKT + E+ I K L + +A+FI P +L +EK
Sbjct: 34 DENVVASAPTASGKTALAELAICKTLS-EGGTALFIAPMRALTNEK 78
>gi|317124910|ref|YP_004099022.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315588998|gb|ADU48295.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 959
Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 52 SLAKAAEEFKFYLE----GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
+L + A + +F L+ C + + + +++ PT GKT+VGE + L+ +K A
Sbjct: 17 ALREFAAQLEFPLDDFQVAACRAVEEGRGVLVAAPTGAGKTVVGEFAVHLALQTGRK-AF 75
Query: 108 FILPYISLVHEKYQSLAK 125
+ P +L ++KY L +
Sbjct: 76 YTTPIKALSNQKYADLVR 93
>gi|302546693|ref|ZP_07299035.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
ATCC 53653]
gi|302464311|gb|EFL27404.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
ATCC 53653]
Length = 949
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
E+ +LA E + F L+ +E Q K +++ PT GKT+VGE + L +
Sbjct: 28 EQATALAPFREMYAFALDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALT-QG 86
Query: 104 KSAIFILPYISLVHEKYQSLAK 125
+ + P +L ++KY L K
Sbjct: 87 RKCFYTTPIKALSNQKYADLVK 108
>gi|222480914|ref|YP_002567151.1| DEAD/DEAH box helicase [Halorubrum lacusprofundi ATCC 49239]
gi|222453816|gb|ACM58081.1| DEAD/DEAH box helicase domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 780
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 49
+ N V S PT+ GKT + E+ I K L + +A+FI P +L +EK
Sbjct: 34 DHNVVASAPTASGKTALAELAICKTLS-ESGTALFIAPLRALTNEK 78
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
+ N V S PT+ GKT + E+ I K L + +A+FI P +L +EK
Sbjct: 34 DHNVVASAPTASGKTALAELAICKTLS-ESGTALFIAPLRALTNEK 78
>gi|124486390|ref|YP_001031006.1| NADPH-dependent F420 reductase [Methanocorpusculum labreanum Z]
gi|124363931|gb|ABN07739.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 903
Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ K+ ++ T+ GKT +GE+ +K K+ +F++P ++L ++KY + +E++
Sbjct: 224 LLYGKDLLVVAATASGKTFIGEMAGLKNYIEKRGRMLFLVPLVALANQKYD---RFSEKY 280
Query: 61 KFYLEGKCLEMIQNKNCVLSIPT----SGGKTLVG 91
K + + + N + P +GG +VG
Sbjct: 281 KSVTQTSIMTGVSRVNLPETRPVGNRGAGGGIVVG 315
>gi|298675780|ref|YP_003727530.1| DEAD/DEAH box helicase [Methanohalobium evestigatum Z-7303]
gi|298288768|gb|ADI74734.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
Z-7303]
Length = 827
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ N ++ T+ GKTL+GE+ + + K+ +F++P ++L ++KY K
Sbjct: 230 LLDGNNQLVMSATATGKTLIGELAGINNVLNKRGKMLFLVPLVALANQKYDQFTK 284
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
++ N ++ T+ GKTL+GE+ + + K+ +F++P ++L ++KY K
Sbjct: 230 LLDGNNQLVMSATATGKTLIGELAGINNVLNKRGKMLFLVPLVALANQKYDQFTK 284
>gi|433199331|ref|ZP_20383225.1| hypothetical protein WGW_02876 [Escherichia coli KTE94]
gi|431719959|gb|ELJ83995.1| hypothetical protein WGW_02876 [Escherichia coli KTE94]
Length = 713
Score = 35.4 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++Q +N VLS TS GK+LV + ++ + + K + I+P I+L+ E + L K ++F
Sbjct: 115 IMQGRNVVLSASTSVGKSLVIDAVLAQR---RFKKVVVIVPTIALIDETRRRLVKRFKDF 171
Query: 61 KFYLEGKCLEMIQNKNCVL 79
+++ N L
Sbjct: 172 NLITHPSQESVVETTNVYL 190
Score = 35.4 bits (80), Expect = 8.1, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++Q +N VLS TS GK+LV + ++ + + K + I+P I+L+ E + L K ++F
Sbjct: 115 IMQGRNVVLSASTSVGKSLVIDAVLAQR---RFKKVVVIVPTIALIDETRRRLVKRFKDF 171
Query: 131 KF 132
Sbjct: 172 NL 173
>gi|390596101|gb|EIN05504.1| antiviral helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 1041
Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYL---EGKCLEMIQ-NKNCVLSIPTSGGKTLVGEILIM 96
PY+ + ++ AK A +KF L + + IQ N++ ++S TS GKT+V E I
Sbjct: 90 PYVPI--SQHVPPAKPARTYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVVAEYAIA 147
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSL 123
+ L+ KQ+ I+ P +L ++KY+ +
Sbjct: 148 QCLERKQR-VIYTSPIKALSNQKYREM 173
>gi|392973150|ref|YP_006489108.1| UvsW RNA-DNA and DNA-DNA helicase [Acinetobacter phage ZZ1]
gi|390058291|gb|AFL47745.1| UvsW RNA-DNA and DNA-DNA helicase [Acinetobacter phage ZZ1]
Length = 500
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 46
NK +L++PTS GK+L+ +L L+ +S + I+P +LV
Sbjct: 129 NKRRILNLPTSAGKSLIQALLTKYTLEHSDRSVLIIVPTTALV 171
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
NK +L++PTS GK+L+ +L L+ +S + I+P +LV
Sbjct: 129 NKRRILNLPTSAGKSLIQALLTKYTLEHSDRSVLIIVPTTALV 171
>gi|386393557|ref|ZP_10078338.1| CRISPR-associated endonuclease Cas3-HD [Desulfovibrio sp. U5L]
gi|385734435|gb|EIG54633.1| CRISPR-associated endonuclease Cas3-HD [Desulfovibrio sp. U5L]
Length = 749
Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 9 LSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKA 56
L++PT GGKTL +K + +K I+++PY S++ + + KA
Sbjct: 244 LTVPTGGGKTLSSLAFALKHAITHDRKQVIYVIPYTSIIEQNAEVFRKA 292
Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 79 LSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKYQSLAKA 126
L++PT GGKTL +K + +K I+++PY S++ + + KA
Sbjct: 244 LTVPTGGGKTLSSLAFALKHAITHDRKQVIYVIPYTSIIEQNAEVFRKA 292
>gi|83746027|ref|ZP_00943082.1| Hypothetical Protein RRSL_04052 [Ralstonia solanacearum UW551]
gi|83727210|gb|EAP74333.1| Hypothetical Protein RRSL_04052 [Ralstonia solanacearum UW551]
Length = 1058
Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 9 LSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 65
+S PT GK+ + E+ I+ L + K IF+ P ++LV + ++L KA E + E
Sbjct: 279 ISFPTGAGKSTLSELKILSNL-CQGKDTIFLAPTLALVDQTARALQKAFPEARLSRE 334
Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 79 LSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135
+S PT GK+ + E+ I+ L + K IF+ P ++LV + ++L KA E + E
Sbjct: 279 ISFPTGAGKSTLSELKILSNL-CQGKDTIFLAPTLALVDQTARALQKAFPEARLSRE 334
>gi|91773109|ref|YP_565801.1| CRISPR-associated helicase Cas3 [Methanococcoides burtonii DSM
6242]
gi|91712124|gb|ABE52051.1| CRISPR-associated helicase Cas3 [Methanococcoides burtonii DSM
6242]
Length = 880
Score = 35.4 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQ--KSAIFILPYISLVHEKYQSL 53
NK +LS+PT GGKT + L++ L+ K ++ P+I+++ + Y+S+
Sbjct: 292 NKIFMLSVPTGGGKTNISMKLVLNILEHDNSLKRIFYVFPFINIIEQNYKSI 343
Score = 35.4 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQ--KSAIFILPYISLVHEKYQSL 123
NK +LS+PT GGKT + L++ L+ K ++ P+I+++ + Y+S+
Sbjct: 292 NKIFMLSVPTGGGKTNISMKLVLNILEHDNSLKRIFYVFPFINIIEQNYKSI 343
>gi|403527393|ref|YP_006662280.1| helicase HelY [Arthrobacter sp. Rue61a]
gi|403229820|gb|AFR29242.1| putative helicase HelY [Arthrobacter sp. Rue61a]
Length = 991
Score = 35.4 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
C + + + +++ PT GKT+VGE I L+ K A + P +L ++KY LA
Sbjct: 47 CRSLQEGRGVLVAAPTGAGKTIVGEFAIYLALERGLK-AFYTTPIKALSNQKYSELA 102
>gi|119963790|ref|YP_947928.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950649|gb|ABM09560.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 991
Score = 35.4 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
C + + + +++ PT GKT+VGE I L+ K A + P +L ++KY LA
Sbjct: 47 CRSLQEGRGVLVAAPTGAGKTIVGEFAIYLALERGLK-AFYTTPIKALSNQKYSELA 102
>gi|300727023|ref|ZP_07060442.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
gi|299775567|gb|EFI72158.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
Length = 642
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 58 EEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
+ F+ E E++ K+C + +PT GGK+L +I + +A+ + P ISL+H
Sbjct: 14 DSFRPNQEDIINEVMAGKDCFVLMPTGGGKSLCYQIPALA----MPGTAVIVSPLISLMH 69
Query: 118 EKYQSL 123
++ ++L
Sbjct: 70 DQVEAL 75
>gi|429200671|ref|ZP_19192347.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
gi|428663653|gb|EKX63000.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
Length = 949
Score = 35.4 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
LA E + F L+ +E Q K +++ PT GKT+VGE + LK + K +
Sbjct: 40 LASFREMYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALK-QGKKCFY 98
Query: 109 ILPYISLVHEKYQSLAK 125
P +L ++KY L +
Sbjct: 99 TTPIKALSNQKYADLCR 115
>gi|299739082|ref|XP_001835034.2| MTR4 [Coprinopsis cinerea okayama7#130]
gi|298403614|gb|EAU86800.2| MTR4 [Coprinopsis cinerea okayama7#130]
Length = 1059
Score = 35.4 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 11 IPTSGGKTLVGEILIMKELKIKQKSAIFILP-YISLVHEKYQSLAKAAEEFKFYLEG--- 66
+ S G T E EL+ + + + + P Y K+ AK E+KF L+
Sbjct: 77 VAASAGLTGAAETNSRLELRHQVRHQVAVPPGYDYTPISKHVPPAKWDREYKFELDPFQR 136
Query: 67 -KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+ +N++ ++S TS GKT+V E I + L KQ+ I+ P +L ++KY+ +
Sbjct: 137 VSVYAIQRNESVLVSAHTSAGKTVVAEYAIAQCLNRKQR-VIYTSPIKALSNQKYREM 193
>gi|108759542|ref|YP_632741.1| DEAD/DEAH box helicase [Myxococcus xanthus DK 1622]
gi|108463422|gb|ABF88607.1| DEAD/DEAH box helicase [Myxococcus xanthus DK 1622]
Length = 849
Score = 35.4 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE++ K+ L PT GK+LV L K + + K + + P +LV+EK+ +L
Sbjct: 47 EEAILELLAGKHLFLKTPTGSGKSLVATALHFKAMA-EGKVSFYTCPIKALVNEKFFALC 105
Query: 125 KA 126
A
Sbjct: 106 DA 107
>gi|326484412|gb|EGE08422.1| DEAD/DEAH box DNA helicase [Trichophyton equinum CBS 127.97]
Length = 1498
Score = 35.4 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 25 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNK--------- 75
I+K +I+ K A I+ I LV S + + F+ IQ+K
Sbjct: 194 IVKSPEIQLKHAPPIIQGIRLV-----STRELPDRFRTLFSFPLFNAIQSKTFPVIYHRA 248
Query: 76 -NCVLSIPTSGGKTLVGEILIMK---ELKIKQKSAIFILPYISLVHEKYQ 121
N VLS PT GKT++ E+ I K +LK + +++ P SL E+++
Sbjct: 249 DNVVLSAPTGSGKTVIMELAICKLVSDLKDSRFKVVYLAPTKSLCSERFR 298
>gi|326469480|gb|EGD93489.1| DEAD/DEAH box DNA helicase [Trichophyton tonsurans CBS 112818]
Length = 1496
Score = 35.4 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 25 IMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNK--------- 75
I+K +I+ K A I+ I LV S + + F+ IQ+K
Sbjct: 194 IVKSPEIQLKHAPPIIQGIRLV-----STRELPDRFRTLFSFPLFNAIQSKTFPVIYHRA 248
Query: 76 -NCVLSIPTSGGKTLVGEILIMK---ELKIKQKSAIFILPYISLVHEKYQ 121
N VLS PT GKT++ E+ I K +LK + +++ P SL E+++
Sbjct: 249 DNVVLSAPTGSGKTVIMELAICKLVSDLKDSRFKVVYLAPTKSLCSERFR 298
>gi|302690984|ref|XP_003035171.1| hypothetical protein SCHCODRAFT_51157 [Schizophyllum commune H4-8]
gi|300108867|gb|EFJ00269.1| hypothetical protein SCHCODRAFT_51157 [Schizophyllum commune H4-8]
Length = 1020
Score = 35.4 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 54 AKAAEEFKFYLEG----KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
AK E+KF L+ + +N++ ++S TS GKT+V E I + L KQ+ I+
Sbjct: 80 AKPDREYKFELDPFQRVSVYAIQRNESVLVSAHTSAGKTVVAEYAIAQCLNRKQR-VIYT 138
Query: 110 LPYISLVHEKYQSLA 124
P +L ++KY+ ++
Sbjct: 139 SPIKALSNQKYREMS 153
>gi|452912070|ref|ZP_21960727.1| putative helicase [Kocuria palustris PEL]
gi|452832771|gb|EME35595.1| putative helicase [Kocuria palustris PEL]
Length = 957
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 50 YQSLAKAAEEFK---FYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA 106
Y+S A+ +F+ F +EG C + + + +++ PT GKT+VGE + L QK A
Sbjct: 13 YRSRFAASLDFELDDFQIEG-CRALEEGRGVLVAAPTGAGKTVVGEFAVDLALHRGQK-A 70
Query: 107 IFILPYISLVHEKYQSLAK 125
+ P +L ++K+ +
Sbjct: 71 FYTTPIKALSNQKHSDFVR 89
>gi|17542826|ref|NP_501757.1| Protein MTR-4 [Caenorhabditis elegans]
gi|2495152|sp|Q23223.1|MTR4_CAEEL RecName: Full=mRNA transport homolog 4; AltName:
Full=Uncharacterized helicase W08D2.7
gi|3880559|emb|CAA94235.1| Protein MTR-4 [Caenorhabditis elegans]
Length = 1026
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+V I K L+ KQ+ I+ P +L ++KY+ L EEFK
Sbjct: 140 NQSVLVSAHTSAGKTVVATYAIAKCLREKQR-VIYTSPIKALSNQKYREL---EEEFK 193
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
N++ ++S TS GKT+V I K L+ KQ+ I+ P +L ++KY+ L EEFK
Sbjct: 140 NQSVLVSAHTSAGKTVVATYAIAKCLREKQR-VIYTSPIKALSNQKYREL---EEEFK 193
>gi|407772150|ref|ZP_11119479.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407283498|gb|EKF09028.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 1044
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHE 118
+++ ++ V+ +PTS GKT E++I L + + A+ + PY SL H+
Sbjct: 268 VLEGRSVVIQMPTSAGKTRATELIIRSAFLSQRARLAVIVAPYRSLCHD 316
Score = 35.0 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHE 48
+++ ++ V+ +PTS GKT E++I L + + A+ + PY SL H+
Sbjct: 268 VLEGRSVVIQMPTSAGKTRATELIIRSAFLSQRARLAVIVAPYRSLCHD 316
>gi|419280654|ref|ZP_13822891.1| DEAD/DEAH box helicase family protein [Escherichia coli DEC10E]
gi|419377750|ref|ZP_13918766.1| DEAD/DEAH box helicase family protein [Escherichia coli DEC14B]
gi|419383087|ref|ZP_13924029.1| DEAD/DEAH box helicase family protein [Escherichia coli DEC14C]
gi|419388383|ref|ZP_13929250.1| DEAD/DEAH box helicase family protein [Escherichia coli DEC14D]
gi|378123756|gb|EHW85173.1| DEAD/DEAH box helicase family protein [Escherichia coli DEC10E]
gi|378215289|gb|EHX75588.1| DEAD/DEAH box helicase family protein [Escherichia coli DEC14B]
gi|378225028|gb|EHX85229.1| DEAD/DEAH box helicase family protein [Escherichia coli DEC14C]
gi|378228381|gb|EHX88539.1| DEAD/DEAH box helicase family protein [Escherichia coli DEC14D]
Length = 1047
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKA 126
++++ ++ ++ +PTS GKT E+++ + S AI I P+ +L HE SL +A
Sbjct: 256 DVLKGESAIIQMPTSAGKTKATELILRSAFLADRVSLAIIIAPFRALCHEIKNSLVEA 313
>gi|365824846|ref|ZP_09366806.1| hypothetical protein HMPREF0045_00442 [Actinomyces graevenitzii
C83]
gi|365259034|gb|EHM89029.1| hypothetical protein HMPREF0045_00442 [Actinomyces graevenitzii
C83]
Length = 916
Score = 35.4 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 62 FYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
F LEG C + + K+ +++ PT GKT+VGE + L +K+ + P +L ++KY
Sbjct: 37 FQLEG-CRALEEGKSVLVAAPTGAGKTVVGEFAVYLGLMSGRKT-FYTTPIKALSNQKYL 94
Query: 122 SL 123
L
Sbjct: 95 DL 96
>gi|20090271|ref|NP_616346.1| hypothetical protein MA1411 [Methanosarcina acetivorans C2A]
gi|19915267|gb|AAM04826.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
C2A]
Length = 826
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 34/55 (61%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ KN + T+ GKTL+GE+ ++ L K+ ++++P ++L ++KY +
Sbjct: 231 LLEGKNQFVVSATATGKTLIGEMAGVQNLLDKKGKMLYLVPLVALANQKYDQFTE 285
>gi|296814878|ref|XP_002847776.1| ATP-dependent DNA helicase MER3 [Arthroderma otae CBS 113480]
gi|238840801|gb|EEQ30463.1| ATP-dependent DNA helicase MER3 [Arthroderma otae CBS 113480]
Length = 1443
Score = 35.4 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 64 LEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILIMK---ELKIKQKSAIFILPYISLVHE 118
++ K +I ++ N VLS PT GKT++ E+ I K +LK + AI++ P SL E
Sbjct: 228 IQSKTFSIIYHRVDNVVLSAPTGSGKTVIMELAICKLVSDLKDTRFKAIYLAPTKSLCSE 287
Query: 119 K 119
+
Sbjct: 288 R 288
>gi|113971658|ref|YP_735451.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886342|gb|ABI40394.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 717
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 39 ILPYISLVHEKYQSLAKAAEEFKFY-LEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIM 96
+ P LV + Y+S E F F+ ++ K ++ + KN VLS PTS GK+ + + LI
Sbjct: 82 LTPEKELVLDIYRS--NFDENFIFHSMQAKVFRLLMSGKNVVLSAPTSMGKSAIIDALIT 139
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEV 136
+ K K + ++P I+L+ E + + K KF L++
Sbjct: 140 ER---KFKKIVIVVPTIALIDETRRRIQK-----KFGLDI 171
>gi|444917764|ref|ZP_21237851.1| Helicase [Cystobacter fuscus DSM 2262]
gi|444710557|gb|ELW51534.1| Helicase [Cystobacter fuscus DSM 2262]
Length = 852
Score = 35.4 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE++ K+ L PT GK+LV L K + + K + + P +LV+EK+ +L
Sbjct: 48 EEAILELLGGKHLFLKTPTGSGKSLVAMALHFKAMA-EGKVSFYTCPIKALVNEKFFALC 106
Query: 125 KA 126
+A
Sbjct: 107 EA 108
>gi|283795759|ref|ZP_06344912.1| putative Ski2-type helicase [Clostridium sp. M62/1]
gi|291076697|gb|EFE14061.1| DEAD/DEAH box helicase [Clostridium sp. M62/1]
Length = 606
Score = 35.4 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ ++ TS GKTLV E+ IM LK ++KS I ++P ++V E+ +SL
Sbjct: 66 SQHVIVQGATSSGKTLVSEMAIMDCLKSRKKS-IVLVPLKAMVRERCESL 114
Score = 35.4 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ ++ TS GKTLV E+ IM LK ++KS I ++P ++V E+ +SL
Sbjct: 66 SQHVIVQGATSSGKTLVSEMAIMDCLKSRKKS-IVLVPLKAMVRERCESL 114
>gi|330834740|ref|YP_004409468.1| type III restriction enzyme, res subunit [Metallosphaera cuprina
Ar-4]
gi|329566879|gb|AEB94984.1| type III restriction enzyme, res subunit [Metallosphaera cuprina
Ar-4]
Length = 654
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL-AKAAEEFK 61
Q+K V+S+PT GKTL+ E+ + +L + + + P L + Y + +K ++
Sbjct: 36 QSKFLVVSMPTGSGKTLI-ELFVASQLASEGMRVLVLEPTRLLCDQMYHNFWSKVFDDVG 94
Query: 62 FYLEGKCLEMIQNKNCVLSIPTSGGK 87
EG C + K ++S P + K
Sbjct: 95 EEYEGNCESFERGKRVIVSTPITSAK 120
>gi|383320755|ref|YP_005381596.1| Superfamily II helicase [Methanocella conradii HZ254]
gi|379322125|gb|AFD01078.1| Superfamily II helicase [Methanocella conradii HZ254]
Length = 988
Score = 35.4 bits (80), Expect = 8.1, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAE--EFKF 62
N V+S PT+ GKT++ E ++KEL + + +FI P +L +EK + +FK
Sbjct: 43 NVVVSAPTASGKTVLAEAAMVKELGRPDRGKVLFIAPLRALTNEKEAGWKQVLSRIDFKV 102
Query: 63 YL 64
Y+
Sbjct: 103 YV 104
Score = 35.4 bits (80), Expect = 8.1, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAE--EFKF 132
N V+S PT+ GKT++ E ++KEL + + +FI P +L +EK + +FK
Sbjct: 43 NVVVSAPTASGKTVLAEAAMVKELGRPDRGKVLFIAPLRALTNEKEAGWKQVLSRIDFKV 102
Query: 133 YL 134
Y+
Sbjct: 103 YV 104
>gi|338535799|ref|YP_004669133.1| DEAD/DEAH box helicase [Myxococcus fulvus HW-1]
gi|337261895|gb|AEI68055.1| DEAD/DEAH box helicase [Myxococcus fulvus HW-1]
Length = 849
Score = 35.4 bits (80), Expect = 8.2, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE++ K+ L PT GK+LV L K + + K + + P +LV+EK+ +L
Sbjct: 47 EEAILELLAGKHLFLKTPTGSGKSLVATALHFKAMA-EGKVSFYTCPIKALVNEKFFALC 105
Query: 125 KA 126
A
Sbjct: 106 DA 107
>gi|449470374|ref|XP_004152892.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis
sativus]
Length = 1014
Score = 35.4 bits (80), Expect = 8.3, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127
CLE +N++ ++S TS GKT V E I + KQ+ I+ P +L ++KY+ L +
Sbjct: 111 CLE--RNESILVSAHTSAGKTAVAEYAIAMAFRDKQR-VIYTSPLKALSNQKYREL---S 164
Query: 128 EEFK 131
+EFK
Sbjct: 165 QEFK 168
>gi|290985933|ref|XP_002675679.1| predicted protein [Naegleria gruberi]
gi|284089277|gb|EFC42935.1| predicted protein [Naegleria gruberi]
Length = 2146
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 63 YLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHEKY 120
+ E L ++QNK+ ++S PTS GKT + + K L+ S I + P +LV++ Y
Sbjct: 1138 WQENMILSILQNKSILVSAPTSSGKTFIAFFAMEKVLRESDDSIIVYCCPTKALVNQAY 1196
>gi|253828003|ref|ZP_04870888.1| predicted helicase [Helicobacter canadensis MIT 98-5491]
gi|313142573|ref|ZP_07804766.1| helicase conserved C-terminal domain-containing protein
[Helicobacter canadensis MIT 98-5491]
gi|253511409|gb|EES90068.1| predicted helicase [Helicobacter canadensis MIT 98-5491]
gi|313131604|gb|EFR49221.1| helicase conserved C-terminal domain-containing protein
[Helicobacter canadensis MIT 98-5491]
Length = 704
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ N++ +LS PTS GK+ + + LI K K+ + I+P ISL+ E + L + +
Sbjct: 103 LLSNESLILSAPTSFGKSFIIDALIAMR---KPKNILIIVPTISLLDEARRRLIRKFHNY 159
Query: 131 K 131
K
Sbjct: 160 K 160
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ N++ +LS PTS GK+ + + LI K K+ + I+P ISL+ E + L + +
Sbjct: 103 LLSNESLILSAPTSFGKSFIIDALIAMR---KPKNILIIVPTISLLDEARRRLIRKFHNY 159
Query: 61 K 61
K
Sbjct: 160 K 160
>gi|156031013|ref|XP_001584832.1| hypothetical protein SS1G_14287 [Sclerotinia sclerotiorum 1980]
gi|154700678|gb|EDO00417.1| hypothetical protein SS1G_14287 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 543
Score = 35.4 bits (80), Expect = 8.3, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 39 ILPYISLVHEKYQSLAKAAEEFK-------FYLEGKCL----EMIQNKNCVLSIPTSGGK 87
I P + L H YQ + + F + + +CL + +N V + PT GGK
Sbjct: 104 INPLLDLAHPAYQLPRQLTDNFAALGIKSIYPWQSECLLRSGALAGGRNLVYTAPTGGGK 163
Query: 88 TLVGEILIMKEL 99
+LV ++L++K++
Sbjct: 164 SLVADVLMLKKI 175
>gi|336117414|ref|YP_004572182.1| ATP-dependent helicase [Microlunatus phosphovorus NM-1]
gi|334685194|dbj|BAK34779.1| putative ATP-dependent helicase [Microlunatus phosphovorus NM-1]
Length = 949
Score = 35.4 bits (80), Expect = 8.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 60 FKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119
F Y C + +++ PT GKT+VGE + L+ + + A + P +L ++K
Sbjct: 33 FDDYQREACAHLESGSGVLVAAPTGAGKTIVGEFAVWLALQ-RGRKAFYTTPIKALSNQK 91
Query: 120 YQSLAK 125
Y L +
Sbjct: 92 YADLVR 97
>gi|440293885|gb|ELP86932.1| DEAD/DEAH box helicase, putative, partial [Entamoeba invadens IP1]
Length = 533
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ QN++ ++S TS GKT V E I + LK Q+ I+ P +L ++K++ L E+F
Sbjct: 106 IAQNESVLVSAHTSAGKTAVAEYAIAQALKNNQR-VIYTSPIKALSNQKFRDL---QEQF 161
Query: 61 K 61
K
Sbjct: 162 K 162
>gi|455649626|gb|EMF28422.1| helicase [Streptomyces gancidicus BKS 13-15]
Length = 937
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 52 SLAKAAEEFKFYLE----GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI 107
SLA E + F L+ C + K +++ PT GKT+VGE + L+ + K
Sbjct: 24 SLASFREMYDFGLDPFQVEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALE-QGKKCF 82
Query: 108 FILPYISLVHEKYQSLAK 125
+ P +L ++KY L +
Sbjct: 83 YTTPIKALSNQKYADLCR 100
>gi|47095885|ref|ZP_00233489.1| DEAD/DEAH box helicase domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|254913305|ref|ZP_05263317.1| DEAD/DEAH box helicase domain-containing protein [Listeria
monocytogenes J2818]
gi|254937686|ref|ZP_05269383.1| DEAD/DEAH box helicase domain-containing protein [Listeria
monocytogenes F6900]
gi|386048070|ref|YP_005966402.1| DEAD/DEAH box helicase [Listeria monocytogenes J0161]
gi|47015762|gb|EAL06691.1| DEAD/DEAH box helicase domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|258610286|gb|EEW22894.1| DEAD/DEAH box helicase domain-containing protein [Listeria
monocytogenes F6900]
gi|293591306|gb|EFF99640.1| DEAD/DEAH box helicase domain-containing protein [Listeria
monocytogenes J2818]
gi|345535061|gb|AEO04502.1| DEAD/DEAH box helicase domain-containing protein [Listeria
monocytogenes J0161]
Length = 1108
Score = 35.4 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 69 LEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAI-FILPYISLVHEKYQSLA 124
L + +K V+++ TSGGKT V E+ I+K L S + ++ P+ SL E QSL+
Sbjct: 283 LALGNSKGGVVNLRTSGGKTRVAELAILKMLTENPASKVLYLAPFRSLAFEIEQSLS 339
>gi|150020252|ref|YP_001305606.1| CRISPR-associated helicase Cas3 [Thermosipho melanesiensis BI429]
gi|149792773|gb|ABR30221.1| CRISPR-associated helicase Cas3 [Thermosipho melanesiensis BI429]
Length = 651
Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 41 PYISLVHEKYQSLAKAA----EEFKFYLEGKCLEMIQNKN---CVLSIPTSGGKTLVGEI 93
PYI ++ +++ K + + + E +N N + IPT GGKT +
Sbjct: 249 PYIDENFDRLKAMKKENISDINTLRSVMAARVEEKFKNSNKKVFFIEIPTGGGKTNISLR 308
Query: 94 LIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
LI + L+ K+K +++P+I+++ + ++ +K
Sbjct: 309 LISRLLENKKK-VFYVIPFINIIEQNFEYFSK 339
>gi|430811605|emb|CCJ30916.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1052
Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 54 AKAAEEFKFYLEG----KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 109
A+ A +++F L+ + +N++ ++S TS GKT++ E I + L+ KQ+ I+
Sbjct: 123 AEPARKYEFELDPFQKVAIASIEKNESVLVSAHTSAGKTVIAEYAIAQSLRDKQR-VIYT 181
Query: 110 LPYISLVHEKYQSL 123
P +L ++KY+ L
Sbjct: 182 SPIKALSNQKYREL 195
Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+N++ ++S TS GKT++ E I + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 146 KNESVLVSAHTSAGKTVIAEYAIAQSLRDKQR-VIYTSPIKALSNQKYREL 195
>gi|357419111|ref|YP_004932103.1| CRISPR-associated helicase, Cas3 family [Thermovirga lienii DSM
17291]
gi|355396577|gb|AER66006.1| CRISPR-associated helicase, Cas3 family [Thermovirga lienii DSM
17291]
Length = 739
Score = 35.0 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 9 LSIPTSGGKTLVG-EILIMKELKIKQKSAIFILPYISLVHEKYQ 51
LS+PT GKTL+G E+ K+K + I+ LP+IS+V + Q
Sbjct: 230 LSLPTGSGKTLIGLEMAHNWAKKMKFSNIIYALPFISIVEQNAQ 273
Score = 35.0 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 79 LSIPTSGGKTLVG-EILIMKELKIKQKSAIFILPYISLVHEKYQ 121
LS+PT GKTL+G E+ K+K + I+ LP+IS+V + Q
Sbjct: 230 LSLPTGSGKTLIGLEMAHNWAKKMKFSNIIYALPFISIVEQNAQ 273
>gi|84998946|ref|XP_954194.1| DEAD-box helicase [Theileria annulata]
gi|65305192|emb|CAI73517.1| DEAD-box helicase, putative [Theileria annulata]
Length = 1925
Score = 35.0 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAK 55
+++ V++ PT GKTLV E+ + + K K A++I P +L HE+++ K
Sbjct: 1146 DESLVVAAPTGSGKTLVAELGLFRLFDKHPDKIAVYIAPLKALAHERFKDWCK 1198
Score = 35.0 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAK 125
+++ V++ PT GKTLV E+ + + K K A++I P +L HE+++ K
Sbjct: 1146 DESLVVAAPTGSGKTLVAELGLFRLFDKHPDKIAVYIAPLKALAHERFKDWCK 1198
>gi|325193485|emb|CCA27801.1| AGAP009600PA putative [Albugo laibachii Nc14]
Length = 1100
Score = 35.0 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 57 AEEFKFYL---EGKCLEMIQ-NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
A+E+ F L + ++ I N++ ++S TS GKT V E I K L+ KQ+ I+ P
Sbjct: 156 AKEYPFQLDPFQQAAVDFISINESVLVSAHTSAGKTAVAEYAIAKSLRDKQR-VIYTSPI 214
Query: 113 ISLVHEKYQSLAK 125
+L ++KY+ L +
Sbjct: 215 KALSNQKYRDLEQ 227
Score = 35.0 bits (79), Expect = 9.7, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
N++ ++S TS GKT V E I K L+ KQ+ I+ P +L ++KY+ L +
Sbjct: 177 NESVLVSAHTSAGKTAVAEYAIAKSLRDKQR-VIYTSPIKALSNQKYRDLEQ 227
>gi|405362706|ref|ZP_11025759.1| Helicase [Chondromyces apiculatus DSM 436]
gi|397090166|gb|EJJ21040.1| Helicase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 850
Score = 35.0 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 65 EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
E LE++ K+ L PT GK+LV L K + + K + + P +LV+EK+ +L
Sbjct: 48 EEAMLELLAGKHLFLKTPTGSGKSLVATALHFKAMA-EGKVSFYTCPIKALVNEKFFALC 106
Query: 125 KA 126
A
Sbjct: 107 DA 108
>gi|345889587|ref|ZP_08840586.1| hypothetical protein HMPREF0178_03360 [Bilophila sp. 4_1_30]
gi|345039491|gb|EGW43820.1| hypothetical protein HMPREF0178_03360 [Bilophila sp. 4_1_30]
Length = 1039
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKA 126
+++ ++ ++ +PTS GKT E+++ ++ S AI I P+ +L HE SL +A
Sbjct: 256 VLKGESAIVQMPTSAGKTKATELILRSAFLAERVSLAIIIAPFRALCHEIKNSLVEA 312
>gi|154151782|ref|YP_001405400.1| DEAD/DEAH box helicase [Methanoregula boonei 6A8]
gi|154000334|gb|ABS56757.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
Length = 695
Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 33/55 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ K+ ++ T+ GKT +GE+ MK + +F++P ++L ++KY+ ++
Sbjct: 221 LLYGKDLLVVAATASGKTFIGEMAGMKNYLSGRGRMLFLVPLVALANQKYERFSE 275
>gi|198450789|ref|XP_001358130.2| GA18736 [Drosophila pseudoobscura pseudoobscura]
gi|198131191|gb|EAL27267.2| GA18736 [Drosophila pseudoobscura pseudoobscura]
Length = 2182
Score = 35.0 bits (79), Expect = 9.1, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQSLAKA 126
CL N N +L PT GKT+V E+ I + L K ++I P +LV E+ K
Sbjct: 1345 CLYHTDN-NVLLGAPTGSGKTIVAELAIFRALNENPKCKVVYIAPLKALVKERIGDWEKR 1403
Query: 127 AEEFKFYLEVLE 138
L+V+E
Sbjct: 1404 FHRSSLGLKVVE 1415
>gi|195143553|ref|XP_002012762.1| GL23759 [Drosophila persimilis]
gi|194101705|gb|EDW23748.1| GL23759 [Drosophila persimilis]
Length = 2182
Score = 35.0 bits (79), Expect = 9.1, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQSLAKA 126
CL N N +L PT GKT+V E+ I + L K ++I P +LV E+ K
Sbjct: 1345 CLYHTDN-NVLLGAPTGSGKTIVAELAIFRALNENPKCKVVYIAPLKALVKERIGDWEKR 1403
Query: 127 AEEFKFYLEVLE 138
L+V+E
Sbjct: 1404 FHRSSLGLKVVE 1415
>gi|326916147|ref|XP_003204372.1| PREDICTED: activating signal cointegrator 1 complex subunit 3-like
[Meleagris gallopavo]
Length = 2187
Score = 35.0 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY--LEGKCLEMIQNKNC--VLSIPTSGGKTLVGEILI 95
LP +L H +Y+ L K F + ++ + + + +C +L PT GKT+ E+ I
Sbjct: 1293 LPVTALGHPEYEVLYK----FTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAI 1348
Query: 96 MKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
+ K A++I P +LV E+ + EE
Sbjct: 1349 FRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEE 1383
>gi|301053793|ref|YP_003792004.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|300375962|gb|ADK04866.1| DEAD/DEAH box helicase domain protein [Bacillus cereus biovar
anthracis str. CI]
Length = 739
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 64
+ V+S PTS GK+ + +I + K+ ILP I+L++E YQ+ K E K+ L
Sbjct: 135 RRLVVSAPTSFGKSRIISEIIAHNV---YKNIAIILPTIALLNETYQTFKKNKELSKYNL 191
Query: 65 EGKCLEMIQNKNCVL-------SIPTSGGKTLVGEILIMKEL----KIKQKSAIF 108
+ I +N +L + +L + M E+ K++S IF
Sbjct: 192 VNSLAQPIAEQNNILILTPEKMDLMLDQNPSLTIDFFTMDEVYKIQDDKERSNIF 246
>gi|289772656|ref|ZP_06532034.1| helicase [Streptomyces lividans TK24]
gi|289702855|gb|EFD70284.1| helicase [Streptomyces lividans TK24]
Length = 944
Score = 35.0 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
E+ +LA E + F L+ +E Q K +++ PT GKT+VGE + L+ +
Sbjct: 29 EQATALASFREMYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQ-QG 87
Query: 104 KSAIFILPYISLVHEKYQSLAK 125
+ + P +L ++KY L +
Sbjct: 88 RKCFYTTPIKALSNQKYADLCR 109
>gi|206580213|ref|YP_002237607.1| helicase [Klebsiella pneumoniae 342]
gi|206569271|gb|ACI11047.1| putative helicase [Klebsiella pneumoniae 342]
Length = 732
Score = 35.0 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++Q +N VLS TS GK+LV + ++ + + K + I+P I+L+ E + L K ++F
Sbjct: 134 IMQGRNVVLSASTSVGKSLVIDAVLAQR---RFKKVVVIVPTIALIDETRRRLVKRFKDF 190
Query: 131 KF 132
Sbjct: 191 NL 192
>gi|21220127|ref|NP_625906.1| helicase [Streptomyces coelicolor A3(2)]
gi|6119673|emb|CAB59484.1| putative helicase [Streptomyces coelicolor A3(2)]
Length = 950
Score = 35.0 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQ 103
E+ +LA E + F L+ +E Q K +++ PT GKT+VGE + L+ +
Sbjct: 35 EQATALASFREMYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQ-QG 93
Query: 104 KSAIFILPYISLVHEKYQSLAK 125
+ + P +L ++KY L +
Sbjct: 94 RKCFYTTPIKALSNQKYADLCR 115
>gi|419567478|ref|ZP_14104636.1| hypothetical protein cco37_00230 [Campylobacter coli 1417]
gi|380548389|gb|EIA72296.1| hypothetical protein cco37_00230 [Campylobacter coli 1417]
Length = 704
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILI-MKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++ N++ +LS PTS GK+ + + LI MK K K+ + I+P ISL+ E + L +
Sbjct: 103 LLSNESLILSAPTSFGKSFIIDALIAMK----KPKNILIIVPTISLLDEARRRLVR---- 154
Query: 130 FKFY 133
KFY
Sbjct: 155 -KFY 157
>gi|194901062|ref|XP_001980071.1| GG16932 [Drosophila erecta]
gi|190651774|gb|EDV49029.1| GG16932 [Drosophila erecta]
Length = 2183
Score = 35.0 bits (79), Expect = 9.5, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ N +L PT GKT+V EI I + L K ++I P +LV E+ + +
Sbjct: 1352 DHNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIGDWEQRFQRSSL 1411
Query: 133 YLEVLE 138
L+V+E
Sbjct: 1412 GLKVVE 1417
>gi|402303374|ref|ZP_10822469.1| CRISPR-associated helicase Cas3 [Selenomonas sp. FOBRC9]
gi|400378618|gb|EJP31470.1| CRISPR-associated helicase Cas3 [Selenomonas sp. FOBRC9]
Length = 822
Score = 35.0 bits (79), Expect = 9.5, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 30 KIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCV--LSIPTSGGK 87
K+++K A F P EK +S+A+ ++ + CL + + L++PT GGK
Sbjct: 249 KLEKKIAGFPTPR----EEKAKSIAQLRQK----MSDDCLHAAEQTPGIYRLTVPTGGGK 300
Query: 88 TLVGEILIMKELK-IKQKSAIFILPYISLVHEKYQSL 123
TL G + K +K I ++PY S++ + + +
Sbjct: 301 TLAGMRFALTHAKRWHKKRIIVVIPYTSIIDQNAKEI 337
>gi|419594738|ref|ZP_14129860.1| hypothetical protein cco76_02321 [Campylobacter coli LMG 23336]
gi|419608848|ref|ZP_14143027.1| hypothetical protein cco91_04976 [Campylobacter coli H6]
gi|419610861|ref|ZP_14144914.1| hypothetical protein cco93_05771 [Campylobacter coli H8]
gi|419612406|ref|ZP_14146284.1| hypothetical protein cco94_02863 [Campylobacter coli H9]
gi|380575366|gb|EIA97446.1| hypothetical protein cco76_02321 [Campylobacter coli LMG 23336]
gi|380584862|gb|EIB06255.1| hypothetical protein cco91_04976 [Campylobacter coli H6]
gi|380589285|gb|EIB10356.1| hypothetical protein cco93_05771 [Campylobacter coli H8]
gi|380590359|gb|EIB11375.1| hypothetical protein cco94_02863 [Campylobacter coli H9]
Length = 704
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILI-MKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++ N++ +LS PTS GK+ + + LI MK K K+ + I+P ISL+ E + L +
Sbjct: 103 LLSNESLILSAPTSFGKSFIIDALIAMK----KPKNILIIVPTISLLDEARRRLVR---- 154
Query: 130 FKFY 133
KFY
Sbjct: 155 -KFY 157
>gi|327308836|ref|XP_003239109.1| hypothetical protein TERG_08683 [Trichophyton rubrum CBS 118892]
gi|326459365|gb|EGD84818.1| hypothetical protein TERG_08683 [Trichophyton rubrum CBS 118892]
Length = 408
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 20/113 (17%)
Query: 25 IMKELKIKQKSAIFILPYISLVH-----EKYQSLAKAAEEFKFYL----EGKCLEMIQNK 75
++K +I+ K A I+ I LV +++++L F F L + K +I ++
Sbjct: 146 VVKSPEIQLKHAPPIIQGIRLVSTRELPDRFRTL------FSFPLFNAIQSKTFPVIYHR 199
Query: 76 --NCVLSIPTSGGKTLVGEILIMK---ELKIKQKSAIFILPYISLVHEKYQSL 123
N VLS PT GKT++ E+ I K +LK +++ P SL E+++
Sbjct: 200 ADNVVLSAPTGSGKTVIMELAICKLVSDLKDSHFKVVYLAPTKSLCSERFRDW 252
>gi|453066509|gb|EMF07438.1| DEAD/DEAH box helicase [Serratia marcescens VGH107]
Length = 896
Score = 35.0 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 17 KTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF------KFYLEGKCLE 70
+ L+G+I + K + S LP S + + S + E F +L GK +
Sbjct: 53 QLLLGDIAVALVRKKIENSCWNALPIYSGLSKNSWSKSIKKESFIKELWPAQHLLGKA-D 111
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS--AIFILPYISLVHEKYQSLAKA 126
+ + K+ ++ +PTS GKT EI +++ I ++ AI I P+ +L HE SL +A
Sbjct: 112 VFKGKSAIVQMPTSAGKTKAIEI-VLRSAFISERVLLAIIIAPFRALCHEIKNSLVEA 168
>gi|57168614|ref|ZP_00367746.1| Helicase conserved C-terminal domain protein [Campylobacter coli
RM2228]
gi|57019895|gb|EAL56575.1| Helicase conserved C-terminal domain protein [Campylobacter coli
RM2228]
Length = 704
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILI-MKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++ N++ +LS PTS GK+ + + LI MK K K+ + I+P ISL+ E + L +
Sbjct: 103 LLSNESLILSAPTSFGKSFIIDALIAMK----KPKNILIIVPTISLLDEARRRLVR---- 154
Query: 130 FKFY 133
KFY
Sbjct: 155 -KFY 157
>gi|419601440|ref|ZP_14136148.1| hypothetical protein cco79_08010 [Campylobacter coli LMG 23344]
gi|380581167|gb|EIB02897.1| hypothetical protein cco79_08010 [Campylobacter coli LMG 23344]
Length = 704
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILI-MKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++ N++ +LS PTS GK+ + + LI MK K K+ + I+P ISL+ E + L +
Sbjct: 103 LLSNESLILSAPTSFGKSFIIDALIAMK----KPKNILIIVPTISLLDEARRRLVR---- 154
Query: 130 FKFY 133
KFY
Sbjct: 155 -KFY 157
>gi|21228482|ref|NP_634404.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
gi|20906965|gb|AAM32076.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
Length = 826
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 34/55 (61%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ KN + T+ GKTL+GE+ ++ L K+ ++++P ++L ++KY +
Sbjct: 231 LLERKNQFVVSATATGKTLIGEMAGVQNLLNKKGKMLYLVPLVALANQKYDQFTE 285
>gi|392562656|gb|EIW55836.1| antiviral helicase [Trametes versicolor FP-101664 SS1]
Length = 1063
Score = 35.0 bits (79), Expect = 9.8, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEG----KCLEMIQNKNCVLSIPTSGGKTLVGEILIM 96
PY+ + + + K A E+KF L+ + +N++ ++S TS GKT+V E I
Sbjct: 116 PYVPIAN--HVPPEKPAREYKFVLDPFQQVSVYAIQRNESVLVSAHTSAGKTVVAEYAIA 173
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSL 123
+ L KQ+ I+ P +L ++KY+ +
Sbjct: 174 QCLLQKQR-VIYTSPIKALSNQKYREM 199
>gi|290993372|ref|XP_002679307.1| dicer helicase [Naegleria gruberi]
gi|284092923|gb|EFC46563.1| dicer helicase [Naegleria gruberi]
Length = 857
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 69 LEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ-KSAIFILPYISLVHEKYQSLAKAA 127
+E +++N ++ PT GKT + +LI L + K +FI+ ISLV ++ A+A
Sbjct: 115 VEHCKDENTIIVAPTGAGKTFIAALLIHHMLNLNPFKKVLFIVNQISLVEQQ----ARAL 170
Query: 128 EEF 130
EF
Sbjct: 171 REF 173
>gi|227886436|ref|ZP_04004241.1| conserved hypothetical protein [Escherichia coli 83972]
gi|300896828|ref|ZP_07115324.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300940476|ref|ZP_07155054.1| conserved hypothetical protein [Escherichia coli MS 21-1]
gi|300972058|ref|ZP_07171816.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|300996121|ref|ZP_07181401.1| hypothetical protein HMPREF9553_04862 [Escherichia coli MS 200-1]
gi|301046480|ref|ZP_07193634.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|386599002|ref|YP_006100508.1| hypothetical protein ECOK1_1305 [Escherichia coli IHE3034]
gi|386623692|ref|YP_006143420.1| hypothetical protein CE10_1320 [Escherichia coli O7:K1 str. CE10]
gi|386638711|ref|YP_006105509.1| hypothetical protein ECABU_c14190 [Escherichia coli ABU 83972]
gi|417083794|ref|ZP_11951758.1| hypothetical protein i01_01528 [Escherichia coli cloneA_i1]
gi|422357659|ref|ZP_16438325.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|422366506|ref|ZP_16446971.1| conserved hypothetical protein [Escherichia coli MS 153-1]
gi|422379188|ref|ZP_16459389.1| hypothetical protein HMPREF9532_00712 [Escherichia coli MS 57-2]
gi|422751772|ref|ZP_16805680.1| hypothetical protein ERKG_03999 [Escherichia coli H252]
gi|422757696|ref|ZP_16811513.1| hypothetical protein ERLG_04814 [Escherichia coli H263]
gi|422839664|ref|ZP_16887636.1| hypothetical protein ESPG_02322 [Escherichia coli H397]
gi|432352284|ref|ZP_19595586.1| hypothetical protein WCA_01269 [Escherichia coli KTE2]
gi|432357515|ref|ZP_19600752.1| hypothetical protein WCC_01468 [Escherichia coli KTE4]
gi|432361928|ref|ZP_19605110.1| hypothetical protein WCE_00952 [Escherichia coli KTE5]
gi|432380920|ref|ZP_19623868.1| hypothetical protein WCU_01061 [Escherichia coli KTE15]
gi|432401434|ref|ZP_19644187.1| hypothetical protein WEK_01613 [Escherichia coli KTE26]
gi|432406558|ref|ZP_19649270.1| hypothetical protein WEO_01743 [Escherichia coli KTE28]
gi|432411298|ref|ZP_19653974.1| hypothetical protein WG9_01781 [Escherichia coli KTE39]
gi|432421392|ref|ZP_19663942.1| hypothetical protein A137_01807 [Escherichia coli KTE178]
gi|432425500|ref|ZP_19668008.1| hypothetical protein A139_00885 [Escherichia coli KTE181]
gi|432436591|ref|ZP_19678982.1| hypothetical protein A13M_02299 [Escherichia coli KTE188]
gi|432456178|ref|ZP_19698372.1| hypothetical protein A15C_01966 [Escherichia coli KTE201]
gi|432460273|ref|ZP_19702425.1| hypothetical protein A15I_01138 [Escherichia coli KTE204]
gi|432470540|ref|ZP_19712590.1| hypothetical protein A15M_01422 [Escherichia coli KTE206]
gi|432495096|ref|ZP_19736910.1| hypothetical protein A173_02263 [Escherichia coli KTE214]
gi|432503923|ref|ZP_19745656.1| hypothetical protein A17E_00977 [Escherichia coli KTE220]
gi|432517235|ref|ZP_19754430.1| hypothetical protein A17U_00196 [Escherichia coli KTE228]
gi|432523344|ref|ZP_19760478.1| hypothetical protein A17Y_01456 [Escherichia coli KTE230]
gi|432537332|ref|ZP_19774238.1| hypothetical protein A195_00946 [Escherichia coli KTE235]
gi|432558251|ref|ZP_19794937.1| hypothetical protein A1S7_01901 [Escherichia coli KTE49]
gi|432568188|ref|ZP_19804708.1| hypothetical protein A1SE_01765 [Escherichia coli KTE53]
gi|432573223|ref|ZP_19809711.1| hypothetical protein A1SI_01916 [Escherichia coli KTE55]
gi|432587464|ref|ZP_19823826.1| hypothetical protein A1SO_01815 [Escherichia coli KTE58]
gi|432592333|ref|ZP_19828659.1| hypothetical protein A1SS_01757 [Escherichia coli KTE60]
gi|432597187|ref|ZP_19833465.1| hypothetical protein A1SW_01895 [Escherichia coli KTE62]
gi|432630812|ref|ZP_19866752.1| hypothetical protein A1UW_01190 [Escherichia coli KTE80]
gi|432640452|ref|ZP_19876289.1| hypothetical protein A1W1_01310 [Escherichia coli KTE83]
gi|432645725|ref|ZP_19881519.1| hypothetical protein A1W5_01471 [Escherichia coli KTE86]
gi|432650630|ref|ZP_19886389.1| hypothetical protein A1W7_01631 [Escherichia coli KTE87]
gi|432655325|ref|ZP_19891034.1| hypothetical protein A1WE_01436 [Escherichia coli KTE93]
gi|432665539|ref|ZP_19901122.1| hypothetical protein A1Y3_02137 [Escherichia coli KTE116]
gi|432712971|ref|ZP_19948014.1| hypothetical protein WCI_01334 [Escherichia coli KTE8]
gi|432731957|ref|ZP_19966792.1| hypothetical protein WGK_01797 [Escherichia coli KTE45]
gi|432753941|ref|ZP_19988497.1| hypothetical protein WEA_00914 [Escherichia coli KTE22]
gi|432759035|ref|ZP_19993534.1| hypothetical protein A1S1_01154 [Escherichia coli KTE46]
gi|432778075|ref|ZP_20012322.1| hypothetical protein A1SQ_01738 [Escherichia coli KTE59]
gi|432783128|ref|ZP_20017311.1| hypothetical protein A1SY_01965 [Escherichia coli KTE63]
gi|432786886|ref|ZP_20021028.1| hypothetical protein A1U3_01000 [Escherichia coli KTE65]
gi|432820446|ref|ZP_20054149.1| hypothetical protein A1Y5_02046 [Escherichia coli KTE118]
gi|432886007|ref|ZP_20100202.1| hypothetical protein A31C_01915 [Escherichia coli KTE158]
gi|432904108|ref|ZP_20113330.1| hypothetical protein A13Y_01694 [Escherichia coli KTE194]
gi|432912073|ref|ZP_20118023.1| hypothetical protein A13Q_01629 [Escherichia coli KTE190]
gi|432937287|ref|ZP_20135790.1| hypothetical protein A13C_00206 [Escherichia coli KTE183]
gi|432971397|ref|ZP_20160270.1| hypothetical protein A15O_01967 [Escherichia coli KTE207]
gi|432977852|ref|ZP_20166675.1| hypothetical protein A15S_03766 [Escherichia coli KTE209]
gi|432984930|ref|ZP_20173659.1| hypothetical protein A175_01380 [Escherichia coli KTE215]
gi|432994908|ref|ZP_20183522.1| hypothetical protein A17A_01992 [Escherichia coli KTE218]
gi|432999432|ref|ZP_20187965.1| hypothetical protein A17K_01767 [Escherichia coli KTE223]
gi|433004650|ref|ZP_20193086.1| hypothetical protein A17S_02215 [Escherichia coli KTE227]
gi|433011910|ref|ZP_20200307.1| hypothetical protein A17W_04671 [Escherichia coli KTE229]
gi|433018123|ref|ZP_20206379.1| hypothetical protein WI7_01175 [Escherichia coli KTE105]
gi|433037510|ref|ZP_20225128.1| hypothetical protein WIE_00851 [Escherichia coli KTE113]
gi|433052518|ref|ZP_20239735.1| hypothetical protein WIK_01344 [Escherichia coli KTE122]
gi|433057488|ref|ZP_20244565.1| hypothetical protein WIM_01271 [Escherichia coli KTE124]
gi|433067465|ref|ZP_20254281.1| hypothetical protein WIQ_01358 [Escherichia coli KTE128]
gi|433077328|ref|ZP_20263887.1| hypothetical protein WIU_01204 [Escherichia coli KTE131]
gi|433082117|ref|ZP_20268589.1| hypothetical protein WIW_01262 [Escherichia coli KTE133]
gi|433086754|ref|ZP_20273145.1| hypothetical protein WIY_01205 [Escherichia coli KTE137]
gi|433100708|ref|ZP_20286812.1| hypothetical protein WK5_01265 [Escherichia coli KTE145]
gi|433115066|ref|ZP_20300877.1| hypothetical protein WKA_01258 [Escherichia coli KTE153]
gi|433124687|ref|ZP_20310269.1| hypothetical protein WKE_01187 [Escherichia coli KTE160]
gi|433138747|ref|ZP_20324026.1| hypothetical protein WKM_01033 [Escherichia coli KTE167]
gi|433148689|ref|ZP_20333734.1| hypothetical protein WKQ_01346 [Escherichia coli KTE174]
gi|433153270|ref|ZP_20338233.1| hypothetical protein WKS_01200 [Escherichia coli KTE176]
gi|433158142|ref|ZP_20343002.1| hypothetical protein WKU_01223 [Escherichia coli KTE177]
gi|433162969|ref|ZP_20347725.1| hypothetical protein WKW_01179 [Escherichia coli KTE179]
gi|433168053|ref|ZP_20352709.1| hypothetical protein WKY_01306 [Escherichia coli KTE180]
gi|433177678|ref|ZP_20362120.1| hypothetical protein WGM_01344 [Escherichia coli KTE82]
gi|433187938|ref|ZP_20372050.1| hypothetical protein WGS_01014 [Escherichia coli KTE88]
gi|433212052|ref|ZP_20395660.1| hypothetical protein WI3_01232 [Escherichia coli KTE99]
gi|442607557|ref|ZP_21022322.1| FIG00639050: hypothetical protein [Escherichia coli Nissle 1917]
gi|227836640|gb|EEJ47106.1| conserved hypothetical protein [Escherichia coli 83972]
gi|294492311|gb|ADE91067.1| hypothetical protein ECOK1_1305 [Escherichia coli IHE3034]
gi|300301551|gb|EFJ57936.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300304584|gb|EFJ59104.1| hypothetical protein HMPREF9553_04862 [Escherichia coli MS 200-1]
gi|300359336|gb|EFJ75206.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300411032|gb|EFJ94570.1| conserved hypothetical protein [Escherichia coli MS 45-1]
gi|300454724|gb|EFK18217.1| conserved hypothetical protein [Escherichia coli MS 21-1]
gi|307553203|gb|ADN45978.1| hypothetical protein ECABU_c14190 [Escherichia coli ABU 83972]
gi|315288526|gb|EFU47924.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|315290815|gb|EFU50187.1| conserved hypothetical protein [Escherichia coli MS 153-1]
gi|323949732|gb|EGB45618.1| hypothetical protein ERKG_03999 [Escherichia coli H252]
gi|323953993|gb|EGB49792.1| hypothetical protein ERLG_04814 [Escherichia coli H263]
gi|324009554|gb|EGB78773.1| hypothetical protein HMPREF9532_00712 [Escherichia coli MS 57-2]
gi|349737430|gb|AEQ12136.1| hypothetical protein CE10_1320 [Escherichia coli O7:K1 str. CE10]
gi|355352420|gb|EHG01598.1| hypothetical protein i01_01528 [Escherichia coli cloneA_i1]
gi|371608752|gb|EHN97302.1| hypothetical protein ESPG_02322 [Escherichia coli H397]
gi|430878525|gb|ELC01936.1| hypothetical protein WCC_01468 [Escherichia coli KTE4]
gi|430880305|gb|ELC03616.1| hypothetical protein WCA_01269 [Escherichia coli KTE2]
gi|430888568|gb|ELC11240.1| hypothetical protein WCE_00952 [Escherichia coli KTE5]
gi|430909646|gb|ELC31011.1| hypothetical protein WCU_01061 [Escherichia coli KTE15]
gi|430926264|gb|ELC46851.1| hypothetical protein WEK_01613 [Escherichia coli KTE26]
gi|430930772|gb|ELC51265.1| hypothetical protein WEO_01743 [Escherichia coli KTE28]
gi|430936322|gb|ELC56600.1| hypothetical protein WG9_01781 [Escherichia coli KTE39]
gi|430945646|gb|ELC65712.1| hypothetical protein A137_01807 [Escherichia coli KTE178]
gi|430957031|gb|ELC75685.1| hypothetical protein A139_00885 [Escherichia coli KTE181]
gi|430963602|gb|ELC81187.1| hypothetical protein A13M_02299 [Escherichia coli KTE188]
gi|430983699|gb|ELD00355.1| hypothetical protein A15C_01966 [Escherichia coli KTE201]
gi|430989815|gb|ELD06261.1| hypothetical protein A15I_01138 [Escherichia coli KTE204]
gi|430998899|gb|ELD15097.1| hypothetical protein A15M_01422 [Escherichia coli KTE206]
gi|431026292|gb|ELD39365.1| hypothetical protein A173_02263 [Escherichia coli KTE214]
gi|431040791|gb|ELD51325.1| hypothetical protein A17E_00977 [Escherichia coli KTE220]
gi|431052544|gb|ELD62192.1| hypothetical protein A17U_00196 [Escherichia coli KTE228]
gi|431053490|gb|ELD63095.1| hypothetical protein A17Y_01456 [Escherichia coli KTE230]
gi|431070892|gb|ELD79048.1| hypothetical protein A195_00946 [Escherichia coli KTE235]
gi|431093102|gb|ELD98772.1| hypothetical protein A1S7_01901 [Escherichia coli KTE49]
gi|431101382|gb|ELE06298.1| hypothetical protein A1SE_01765 [Escherichia coli KTE53]
gi|431109510|gb|ELE13461.1| hypothetical protein A1SI_01916 [Escherichia coli KTE55]
gi|431121510|gb|ELE24390.1| hypothetical protein A1SO_01815 [Escherichia coli KTE58]
gi|431131174|gb|ELE33253.1| hypothetical protein A1SS_01757 [Escherichia coli KTE60]
gi|431131583|gb|ELE33600.1| hypothetical protein A1SW_01895 [Escherichia coli KTE62]
gi|431172519|gb|ELE72656.1| hypothetical protein A1UW_01190 [Escherichia coli KTE80]
gi|431181781|gb|ELE81642.1| hypothetical protein A1W5_01471 [Escherichia coli KTE86]
gi|431182717|gb|ELE82533.1| hypothetical protein A1W1_01310 [Escherichia coli KTE83]
gi|431192369|gb|ELE91719.1| hypothetical protein A1W7_01631 [Escherichia coli KTE87]
gi|431193044|gb|ELE92381.1| hypothetical protein A1WE_01436 [Escherichia coli KTE93]
gi|431202355|gb|ELF01041.1| hypothetical protein A1Y3_02137 [Escherichia coli KTE116]
gi|431257984|gb|ELF50770.1| hypothetical protein WCI_01334 [Escherichia coli KTE8]
gi|431277019|gb|ELF68034.1| hypothetical protein WGK_01797 [Escherichia coli KTE45]
gi|431304511|gb|ELF93040.1| hypothetical protein WEA_00914 [Escherichia coli KTE22]
gi|431310353|gb|ELF98545.1| hypothetical protein A1S1_01154 [Escherichia coli KTE46]
gi|431329001|gb|ELG16304.1| hypothetical protein A1SQ_01738 [Escherichia coli KTE59]
gi|431330495|gb|ELG17762.1| hypothetical protein A1SY_01965 [Escherichia coli KTE63]
gi|431340055|gb|ELG27095.1| hypothetical protein A1U3_01000 [Escherichia coli KTE65]
gi|431369586|gb|ELG55807.1| hypothetical protein A1Y5_02046 [Escherichia coli KTE118]
gi|431417816|gb|ELH00244.1| hypothetical protein A31C_01915 [Escherichia coli KTE158]
gi|431433894|gb|ELH15547.1| hypothetical protein A13Y_01694 [Escherichia coli KTE194]
gi|431442662|gb|ELH23749.1| hypothetical protein A13Q_01629 [Escherichia coli KTE190]
gi|431465153|gb|ELH45264.1| hypothetical protein A13C_00206 [Escherichia coli KTE183]
gi|431481363|gb|ELH61077.1| hypothetical protein A15S_03766 [Escherichia coli KTE209]
gi|431484406|gb|ELH64086.1| hypothetical protein A15O_01967 [Escherichia coli KTE207]
gi|431502418|gb|ELH81309.1| hypothetical protein A175_01380 [Escherichia coli KTE215]
gi|431509121|gb|ELH87392.1| hypothetical protein A17A_01992 [Escherichia coli KTE218]
gi|431511805|gb|ELH89934.1| hypothetical protein A17K_01767 [Escherichia coli KTE223]
gi|431516257|gb|ELH93869.1| hypothetical protein A17W_04671 [Escherichia coli KTE229]
gi|431516683|gb|ELH94287.1| hypothetical protein A17S_02215 [Escherichia coli KTE227]
gi|431535036|gb|ELI11420.1| hypothetical protein WI7_01175 [Escherichia coli KTE105]
gi|431555233|gb|ELI29087.1| hypothetical protein WIE_00851 [Escherichia coli KTE113]
gi|431572627|gb|ELI45452.1| hypothetical protein WIM_01271 [Escherichia coli KTE124]
gi|431573805|gb|ELI46595.1| hypothetical protein WIK_01344 [Escherichia coli KTE122]
gi|431588463|gb|ELI59743.1| hypothetical protein WIQ_01358 [Escherichia coli KTE128]
gi|431599259|gb|ELI68967.1| hypothetical protein WIU_01204 [Escherichia coli KTE131]
gi|431604900|gb|ELI74301.1| hypothetical protein WIW_01262 [Escherichia coli KTE133]
gi|431608077|gb|ELI77426.1| hypothetical protein WIY_01205 [Escherichia coli KTE137]
gi|431621349|gb|ELI90161.1| hypothetical protein WK5_01265 [Escherichia coli KTE145]
gi|431635916|gb|ELJ04084.1| hypothetical protein WKA_01258 [Escherichia coli KTE153]
gi|431648367|gb|ELJ15764.1| hypothetical protein WKE_01187 [Escherichia coli KTE160]
gi|431663585|gb|ELJ30343.1| hypothetical protein WKM_01033 [Escherichia coli KTE167]
gi|431673747|gb|ELJ39937.1| hypothetical protein WKQ_01346 [Escherichia coli KTE174]
gi|431677136|gb|ELJ43217.1| hypothetical protein WKS_01200 [Escherichia coli KTE176]
gi|431680487|gb|ELJ46315.1| hypothetical protein WKU_01223 [Escherichia coli KTE177]
gi|431690516|gb|ELJ55994.1| hypothetical protein WKW_01179 [Escherichia coli KTE179]
gi|431691658|gb|ELJ57110.1| hypothetical protein WKY_01306 [Escherichia coli KTE180]
gi|431707327|gb|ELJ71861.1| hypothetical protein WGS_01014 [Escherichia coli KTE88]
gi|431707932|gb|ELJ72458.1| hypothetical protein WGM_01344 [Escherichia coli KTE82]
gi|431735287|gb|ELJ98646.1| hypothetical protein WI3_01232 [Escherichia coli KTE99]
gi|441711029|emb|CCQ08299.1| FIG00639050: hypothetical protein [Escherichia coli Nissle 1917]
Length = 252
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 29 LKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKT 88
LKI Q + YI + E+ AK E FK+ E +Q K C LSI G K
Sbjct: 79 LKINQVWSRVYPAYIYAIEERINVRAKGRESFKY-------ETVQEKQCKLSIMLDGLKD 131
Query: 89 LVGEI-LIMKELKIKQKS 105
L EI +I E +I++ S
Sbjct: 132 LECEIAMISSEFEIEKHS 149
>gi|217078002|ref|YP_002335720.1| CRISPR-associated helicase Cas3 domain protein [Thermosipho
africanus TCF52B]
gi|217037857|gb|ACJ76379.1| crispr-associated helicase Cas3 domain protein, putative
[Thermosipho africanus TCF52B]
Length = 801
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 9 LSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ +PT GGKT + L+ K L+ K+K +++PY++++ + + +K
Sbjct: 296 IEVPTGGGKTNISLRLVRKLLE-KKKKVFYVIPYVNIIEQSFDYFSK 341
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 79 LSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ +PT GGKT + L+ K L+ K+K +++PY++++ + + +K
Sbjct: 296 IEVPTGGGKTNISLRLVRKLLE-KKKKVFYVIPYVNIIEQSFDYFSK 341
>gi|167042655|gb|ABZ07376.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote
HF4000_ANIW133M9]
Length = 711
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ KN ++S PT+ GKTL+ + I++ +K + +++ P +L EK+ K
Sbjct: 36 VLDGKNILVSAPTASGKTLIAILAIIQHIKKHKTKIVYLSPLKALAAEKFSEFKK 90
>gi|423363806|ref|ZP_17341302.1| hypothetical protein IC1_05779 [Bacillus cereus VD022]
gi|401074610|gb|EJP83008.1| hypothetical protein IC1_05779 [Bacillus cereus VD022]
Length = 1050
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKA 126
+ + ++ V+ +PTS GKT E++I + S A+ + P+ +L HE SL+K+
Sbjct: 256 VFKGESAVIQLPTSAGKTKATEVIIRSAFLSNRTSLAVIVAPFRALCHEISMSLSKS 312
>gi|345328773|ref|XP_003431302.1| PREDICTED: activating signal cointegrator 1 complex subunit 3
[Ornithorhynchus anatinus]
Length = 2173
Score = 35.0 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY--LEGKCLEMIQNKNC--VLSIPTSGGKTLVGEILI 95
LP +L KY+SL K F + ++ + + + +C +L PT GKT+ E+ I
Sbjct: 1278 LPITALGCRKYESLYK----FTHFNPVQTQIFHTVYHTDCNVLLGAPTGSGKTVAAELAI 1333
Query: 96 MKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
+ K A++I P +LV E+ + EE
Sbjct: 1334 FRIFNKYPSSKAVYIAPLKALVRERIEDWKVRIEE 1368
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,858,162,338
Number of Sequences: 23463169
Number of extensions: 61694415
Number of successful extensions: 198361
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 795
Number of HSP's that attempted gapping in prelim test: 196503
Number of HSP's gapped (non-prelim): 2487
length of query: 138
length of database: 8,064,228,071
effective HSP length: 103
effective length of query: 35
effective length of database: 9,942,488,960
effective search space: 347987113600
effective search space used: 347987113600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)