BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2029
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ KN ++SIPT+ GKTL+ EI ++ + + A++I+P +L EK+Q
Sbjct: 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEF 88
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ KN ++SIPT+ GKTL+ EI ++ + + A++I+P +L EK+Q
Sbjct: 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEF 88
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
++ KN +L++PT+ GKTL+ E+ +++E IK +++++P +L EKY+S K
Sbjct: 36 KVFSGKNLLLAMPTAAGKTLLAEMAMVRE-AIKGGKSLYVVPLRALAGEKYESFKK 90
Score = 43.5 bits (101), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
KN +L++PT+ GKTL+ E+ +++E IK +++++P +L EKY+S K
Sbjct: 41 KNLLLAMPTAAGKTLLAEMAMVRE-AIKGGKSLYVVPLRALAGEKYESFKK 90
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 35.0 bits (79), Expect = 0.014, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
+++ +L+ PT GKTL+ E+ I+ L AI++ P +L +EKY
Sbjct: 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKY 92
Score = 34.7 bits (78), Expect = 0.017, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
+++ +L+ PT GKTL+ E+ I+ L AI++ P +L +EKY
Sbjct: 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKY 92
>pdb|3OIY|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
pdb|3OIY|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
Length = 414
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE- 59
+VQ K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 33 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADEK 91
Query: 60 ---FKFY 63
F FY
Sbjct: 92 VKIFGFY 98
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++Q K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 32 RIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADE 90
Query: 130 ----FKFY 133
F FY
Sbjct: 91 KVKIFGFY 98
>pdb|3P4X|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
pdb|3P4X|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima
Length = 413
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE- 59
+VQ K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 32 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADEK 90
Query: 60 ---FKFY 63
F FY
Sbjct: 91 VKIFGFY 97
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++Q K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 31 RIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADE 89
Query: 130 ----FKFY 133
F FY
Sbjct: 90 KVKIFGFY 97
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
C++ + ++ ++S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 97 CID--RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYREL 149
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+ ++ ++S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 100 RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYREL 149
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+ ++ ++S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 198 RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYREL 247
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+ ++ ++S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 198 RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYREL 247
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 32.7 bits (73), Expect = 0.066, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE- 59
+VQ K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADEK 148
Query: 60 ---FKFY 63
F FY
Sbjct: 149 VKIFGFY 155
Score = 32.3 bits (72), Expect = 0.093, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE- 129
++Q K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADEK 148
Query: 130 ---FKFY 133
F FY
Sbjct: 149 VKIFGFY 155
>pdb|3P4Y|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga
Maritima - P2 Form
Length = 415
Score = 32.7 bits (73), Expect = 0.066, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE- 59
+VQ K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 34 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADEK 92
Query: 60 ---FKFY 63
F FY
Sbjct: 93 VKIFGFY 99
Score = 32.3 bits (72), Expect = 0.093, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE- 129
++Q K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 34 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADEK 92
Query: 130 ---FKFY 133
F FY
Sbjct: 93 VKIFGFY 99
>pdb|1RIF|A Chain A, Crystal Structure Of The Uvsw Helicase From Bacteriophage
T4
pdb|1RIF|B Chain B, Crystal Structure Of The Uvsw Helicase From Bacteriophage
T4
Length = 282
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 62 FYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
+Y + E + N+ +L++PTS G++L+ +L L+ + + I+P +L
Sbjct: 116 WYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALT 170
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 46
N+ +L++PTS G++L+ +L L+ + + I+P +L
Sbjct: 128 NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALT 170
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 26 MKELKIKQKSAIFILPYISLVH----EKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSI 81
M+ + K++ +L SL+H E+ Q L K AEE K YL G+ + ++
Sbjct: 4 MRLRSVSDKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGS---- 59
Query: 82 PTSGGKTLVGEIL 94
GKT VG+I+
Sbjct: 60 ----GKTTVGKIM 68
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELK---IKQKSAIFILPYISLVHEKYQSLAKAA 127
M+ + + S PT GKTL I I+ +LK K A+ I P L + ++ L K +
Sbjct: 63 MLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS 122
Query: 128 EEFKFYLEVLE 138
E F + ++
Sbjct: 123 EGTGFRIHMIH 133
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELK---IKQKSAIFILPYISLVHEKYQSLAKAA 57
M+ + + S PT GKTL I I+ +LK K A+ I P L + ++ L K +
Sbjct: 63 MLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS 122
Query: 58 EEFKFYLE 65
E F +
Sbjct: 123 EGTGFRIH 130
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 29.6 bits (65), Expect = 0.59, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY--LEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILI 95
LP +L + ++SL + ++F F+ ++ + + N N + PT GKT+ E I
Sbjct: 906 LPVSALRNSAFESLYQ--DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAI 963
Query: 96 MKE-LKIKQKSAIFILPYISLVHEKY 120
++ L+ + ++I P +L + Y
Sbjct: 964 LRMLLQSSEGRCVYITPMEALAEQVY 989
Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE----------LKIKQKSAIFILPYISLVHEKYQSL 53
++N +L PT GKT V + +++E + + I+I P SLV E S
Sbjct: 95 DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154
Query: 54 AK 55
K
Sbjct: 155 GK 156
Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE----------LKIKQKSAIFILPYISLVHEKYQSL 123
++N +L PT GKT V + +++E + + I+I P SLV E S
Sbjct: 95 DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154
Query: 124 AK 125
K
Sbjct: 155 GK 156
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKY 50
+ N + PT GKT+ E I++ L+ + ++I P +L + Y
Sbjct: 942 DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVY 989
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 29.6 bits (65), Expect = 0.59, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY--LEGKCLEMIQNK--NCVLSIPTSGGKTLVGEILI 95
LP +L + ++SL + ++F F+ ++ + + N N + PT GKT+ E I
Sbjct: 906 LPVSALRNSAFESLYQ--DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAI 963
Query: 96 MKE-LKIKQKSAIFILPYISLVHEKY 120
++ L+ + ++I P +L + Y
Sbjct: 964 LRMLLQSSEGRCVYITPMEALAEQVY 989
Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE----------LKIKQKSAIFILPYISLVHEKYQSL 53
++N +L PT GKT V + +++E + + I+I P SLV E S
Sbjct: 95 DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154
Query: 54 AK 55
K
Sbjct: 155 GK 156
Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKE----------LKIKQKSAIFILPYISLVHEKYQSL 123
++N +L PT GKT V + +++E + + I+I P SLV E S
Sbjct: 95 DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154
Query: 124 AK 125
K
Sbjct: 155 GK 156
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKE-LKIKQKSAIFILPYISLVHEKY 50
+ N + PT GKT+ E I++ L+ + ++I P +L + Y
Sbjct: 942 DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVY 989
>pdb|2XFX|A Chain A, Cattle Mhc Class I N01301 Presenting An 11mer From
Theileria Parva
Length = 277
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A AAE F+ YLEG C+E ++
Sbjct: 150 AGAAERFRNYLEGTCVEWLR 169
>pdb|2OCA|A Chain A, The Crystal Structure Of T4 Uvsw
Length = 510
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 59 EFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118
E +Y + E + N+ +L++PTS G++L+ +L L+ + + I+P +L +
Sbjct: 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQ 172
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 48
N+ +L++PTS G++L+ +L L+ + + I+P +L +
Sbjct: 128 NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQ 172
>pdb|1S7U|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|3QUK|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUK|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUL|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3TBS|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBS|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBT|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBV|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBW|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBX|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand V3p
pdb|3TBY|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
Length = 338
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|1N3N|A Chain A, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|C Chain C, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|E Chain E, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|G Chain G, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
Length = 280
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|1FG2|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|D Chain D, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|G Chain G, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|J Chain J, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPF|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp276 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPG|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Np396 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|3FTG|A Chain A, Crystal Structure Of H2db In Complex With Np366-N3a
Variant Peptide From Influenza
pdb|4HUU|A Chain A, Crystal Structure Of H2db-npm6i
pdb|4HUU|D Chain D, Crystal Structure Of H2db-npm6i
pdb|4HUV|A Chain A, Crystal Structure Of H2db-npm6w
pdb|4HUV|D Chain D, Crystal Structure Of H2db-npm6w
pdb|4HUW|A Chain A, Crystal Structure Of H2db-npm6t
pdb|4HUW|C Chain C, Crystal Structure Of H2db-npm6t
pdb|4HUW|E Chain E, Crystal Structure Of H2db-npm6t
pdb|4HUW|G Chain G, Crystal Structure Of H2db-npm6t
Length = 281
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 151 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 180
>pdb|2VE6|A Chain A, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|D Chain D, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|G Chain G, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|J Chain J, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
Length = 277
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|1QLF|A Chain A, Mhc Class I H-2db Complexed With Glycopeptide K3g
pdb|1N5A|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1WBX|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1WBY|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1ZHB|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|2F74|A Chain A, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|2F74|D Chain D, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|3CC5|A Chain A, H-2db Complex With Human Gp100
pdb|3CC5|D Chain D, H-2db Complex With Human Gp100
pdb|3CCH|A Chain A, H-2db Complex With Murine Gp100
pdb|3CCH|D Chain D, H-2db Complex With Murine Gp100
pdb|3CCH|G Chain G, H-2db Complex With Murine Gp100
pdb|3CCH|J Chain J, H-2db Complex With Murine Gp100
pdb|3CH1|A Chain A, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|D Chain D, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|G Chain G, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|J Chain J, Crystal Structure Of H-2db In Complex With Chimeric Gp100
Length = 276
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|1JUF|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13b, Complexed To H2-Db
Length = 276
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|3BUY|A Chain A, Mhc-I In Complex With Peptide
pdb|3L3H|A Chain A, X-ray Crystal Structure Of The F6a Mutant Of Influenza A
Acid Polymerase Epitope Pa224 Bound To Murine H2-db Mhc
pdb|3PQY|A Chain A, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|F Chain F, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|K Chain K, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|P Chain P, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
Length = 275
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 149 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 178
>pdb|1INQ|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13a, Complexed To H2-Db
pdb|3CPL|A Chain A, Crystal Structure Of H-2db In Complex With A Variant M6a
Of The Np366 Peptide From Influenza A Virus
pdb|3CPL|C Chain C, Crystal Structure Of H-2db In Complex With A Variant M6a
Of The Np366 Peptide From Influenza A Virus
Length = 275
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|2CII|A Chain A, The Crystal Structure Of H-2db Complexed With A Partial
Peptide Epitope Suggests An Mhc Class I Assembly-
Intermediate
Length = 275
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 56 AAEEFKFYLEGKCLEMIQ----NKNCVL 79
AAE +K YLEG+C+E + N N L
Sbjct: 152 AAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|1FFN|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33(C9m)
pdb|1FFN|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33(C9m)
pdb|1FFO|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Synthetic Peptide Gp33 (C9mK1A)
pdb|1FFO|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Synthetic Peptide Gp33 (C9mK1A)
pdb|1FFP|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33 (C9mK1S)
pdb|1FFP|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33 (C9mK1S)
pdb|1YN6|A Chain A, Crystal Structure Of A Mouse Mhc Class I Protein, H2-Db,
In Complex With A Peptide From The Influenza A Acid
Polymerase
pdb|1YN7|A Chain A, Crystal Structure Of A Mouse Mhc Class I Protein, H2-Db,
In Complex With A Mutated Peptide (R7a) Of The Influenza
A Acid Polymerase
Length = 273
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 149 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 178
>pdb|2ZOK|A Chain A, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|C Chain C, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|E Chain E, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|G Chain G, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOL|A Chain A, Crystal Structure Of H-2db In Complex With The W513s
Variant Of Jhmv Epitope S510
pdb|2ZOL|C Chain C, Crystal Structure Of H-2db In Complex With The W513s
Variant Of Jhmv Epitope S510
Length = 278
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|1HOC|A Chain A, The Three-Dimensional Structure Of H-2db At 2.4 Angstroms
Resolution: Implications For Antigen-Determinant
Selection
Length = 272
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|1CE6|A Chain A, Mhc Class I H-2db Complexed With A Sendai Virus
Nucleoprotein Peptide
Length = 274
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEHYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|1BZ9|A Chain A, Crystal Structure Of Murine Class I Mhc H2-Db Complexed
With A Synthetic Peptide P1027
Length = 277
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 56 AAEEFKFYLEGKCLEMIQ----NKNCVL 79
AAE +K YLEG+C+E + N N L
Sbjct: 151 AAEHYKAYLEGECVEWLHRYLKNGNATL 178
>pdb|1J9M|A Chain A, K38h Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
>pdb|1ES2|A Chain A, S96a Mutant Of Streptomyces K15 Dd-transpeptidase
Length = 262
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
>pdb|1ES5|A Chain A, S216a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
>pdb|1ES3|A Chain A, C98a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
>pdb|1SKF|A Chain A, Crystal Structure Of The Streptomyces K15
Dd-transpeptidase
Length = 262
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
>pdb|1ES4|A Chain A, C98n Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
K C++ T GGKT++G +L + ++ A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNY 258
>pdb|3RWC|A Chain A, Crystal Structure Of Rhesus Macaque Mhc Class I Molecule
Mamu-B17-Iw9
pdb|3RWC|D Chain D, Crystal Structure Of Rhesus Macaque Mhc Class I Molecule
Mamu-B17-Iw9
pdb|3RWD|A Chain A, Rhesus Macaque Mhc Class I Molecule Mamu-B17-Iw11
pdb|3RWD|D Chain D, Rhesus Macaque Mhc Class I Molecule Mamu-B17-Iw11
pdb|3RWE|A Chain A, Rhesus Macaque Mhc Class I Molecule Mamu-B17-Fw9
pdb|3RWF|A Chain A, Rhesus Macaque Mhc Class I Molecule Mamu-B17-Qw9
pdb|3RWG|A Chain A, Rhesus Macaque Mhc Class I Molecule Mamu-B17-Mw9
pdb|3RWH|A Chain A, Rhesus Macaque Mhc Class I Molecule Mamu-B17-Mf8
pdb|3RWH|D Chain D, Rhesus Macaque Mhc Class I Molecule Mamu-B17-Mf8
pdb|3RWI|A Chain A, Rhesus Macaque Mhc Class I Molecule Mamu-B17-Gw10
pdb|3RWJ|A Chain A, Rhesus Macaque Mhc Class I Molecule Mamu-B17-Hw8
Length = 276
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 55 KAAEEFKFYLEGKCLEMIQ 73
+ AE F+ YLEG+CLE ++
Sbjct: 151 RYAERFRAYLEGECLEWLR 169
>pdb|4HV8|A Chain A, Crystal Structure Of H2db-h155a-npm6i
pdb|4HV8|C Chain C, Crystal Structure Of H2db-h155a-npm6i
Length = 281
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 151 SGAAEAYKAYLEGECVEWLHRYLKNGNATL 180
>pdb|4HUX|A Chain A, Crystal Structure Of H2db-h155a-np
Length = 280
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
+ AAE +K YLEG+C+E + N N L
Sbjct: 150 SGAAEAYKAYLEGECVEWLHRYLKNGNATL 179
>pdb|1LDP|H Chain H, Crystal Structure Of Murine Mhc Class I H-2ld With A
Mixture Of Bound Peptides
Length = 272
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
A AAE ++ YLEG+C+E + N N L
Sbjct: 150 AGAAEYYRAYLEGECVEWLHRYLKNGNATL 179
>pdb|2OI9|A Chain A, Structure Of The 2cLDQL9 ALLOGENEIC COMPLEX
Length = 179
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
A AAE ++ YLEG+C+E + N N L
Sbjct: 150 AGAAEYYRAYLEGECVEWLHRYLKNGNATL 179
>pdb|3TF7|E Chain E, 42f3 Ql9H2-Ld Complex
pdb|3TF7|A Chain A, 42f3 Ql9H2-Ld Complex
pdb|3TFK|A Chain A, 42f3-P4b10H2-Ld
pdb|3TJH|A Chain A, 42f3-P3a1H2-Ld Complex
pdb|3TPU|I Chain I, 42f3 P5e8H2-Ld Complex
pdb|3TPU|E Chain E, 42f3 P5e8H2-Ld Complex
pdb|3TPU|K Chain K, 42f3 P5e8H2-Ld Complex
pdb|3TPU|Q Chain Q, 42f3 P5e8H2-Ld Complex
Length = 180
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
A AAE ++ YLEG+C+E + N N L
Sbjct: 151 AGAAEYYRAYLEGECVEWLHRYLKNGNATL 180
>pdb|1LD9|A Chain A, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
pdb|1LD9|D Chain D, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
Length = 268
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
A AAE ++ YLEG+C+E + N N L
Sbjct: 150 AGAAEYYRAYLEGECVEWLHRYLKNGNATL 179
>pdb|1Q94|A Chain A, Structures Of Hla-A1101 In Complex With Immunodominant
Nonamer And Decamer Hiv-1 Epitopes Clearly Reveal The
Presence Of A Middle Anchor Residue
pdb|1Q94|D Chain D, Structures Of Hla-A1101 In Complex With Immunodominant
Nonamer And Decamer Hiv-1 Epitopes Clearly Reveal The
Presence Of A Middle Anchor Residue
pdb|1QVO|A Chain A, Structures Of Hla-A1101 In Complex With Immunodominant
Nonamer And Decamer Hiv-1 Epitopes Clearly Reveal The
Presence Of A Middle Anchor Residue
pdb|1QVO|D Chain D, Structures Of Hla-A1101 In Complex With Immunodominant
Nonamer And Decamer Hiv-1 Epitopes Clearly Reveal The
Presence Of A Middle Anchor Residue
pdb|1X7Q|A Chain A, Crystal Structure Of Hla-A1101 With Sars Nucleocapsid
Peptide
pdb|2HN7|A Chain A, Hla-A1101 In Complex With Hbv Peptide Homologue
Length = 275
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 54 AKAAEEFKFYLEGKCLEMIQN 74
A AAE+ + YLEG+C+E ++
Sbjct: 150 AHAAEQQRAYLEGRCVEWLRR 170
>pdb|2E7L|E Chain E, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2E7L|F Chain F, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
Length = 181
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVL 79
A AAE ++ YLEG+C+E + N N L
Sbjct: 150 AGAAEYYRAYLEGECVEWLHRYLKNGNATL 179
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEI--LIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
++ ++C++ +PT GGK+L +I L++ L + + P ISL+ ++ L
Sbjct: 37 VLSGRDCLVVMPTGGGKSLCYQIPALLLNGL------TVVVSPLISLMKDQVDQLQANG- 89
Query: 59 EFKFYLEGKCLEMIQNKNCVLSIPT 83
+ CL Q + L + T
Sbjct: 90 -----VAAACLNSTQTREQQLEVMT 109
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEI--LIMKELKIKQKSAIFILPYISLVHEKYQSL 123
++ ++C++ +PT GGK+L +I L++ L + + P ISL+ ++ L
Sbjct: 37 VLSGRDCLVVMPTGGGKSLCYQIPALLLNGL------TVVVSPLISLMKDQVDQL 85
>pdb|1HSA|A Chain A, The Three-Dimensional Structure Of Hla-B27 At 2.1
Angstroms Resolution Suggests A General Mechanism For
Tight Peptide Binding To Mhc
pdb|1HSA|D Chain D, The Three-Dimensional Structure Of Hla-B27 At 2.1
Angstroms Resolution Suggests A General Mechanism For
Tight Peptide Binding To Mhc
pdb|1JGE|A Chain A, Hla-B2705 Bound To Nona-Peptide M9
pdb|1OGT|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The
Vasoactive Intestinal Peptide Type 1 Receptor (Vipr)
Peptide (Residues 400-408)
pdb|1UXS|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The Latent
Membrane Protein 2 Peptide (Lmp2)of Epstein-Barr Virus
pdb|1W0V|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The
Self-Peptide Tis From Egf-Response Factor 1
pdb|2BST|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
Immunodominant Viral Peptides Complexed To Hla-b2705
pdb|2A83|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The Glucagon
Receptor (Gr) Peptide (Residues 412-420)
pdb|3B6S|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The
Citrullinated Vasoactive Intestinal Peptide Type 1
Receptor (Vipr) Peptide (Residues 400-408)
pdb|3BP4|A Chain A, The High Resolution Crystal Structure Of Hla-B2705 In
Complex With A Cathepsin A Signal Sequence Peptide Pcata
pdb|3DTX|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The Double
Citrullinated Vasoactive Intestinal Peptide Type 1
Receptor (Vipr) Peptide (Residues 400-408)
pdb|3LV3|A Chain A, Crystal Structure Of Hla-B2705 Complexed With A Peptide
Derived From The Human Voltage-Dependent Calcium Channel
Alpha1 Subunit (Residues 513-521)
Length = 276
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 54 AKAAEEFKFYLEGKCLEMIQN 74
A+ AE+ + YLEG+C+E ++
Sbjct: 150 ARVAEQLRAYLEGECVEWLRR 170
>pdb|1K5N|A Chain A, Hla-B2709 Bound To Nona-Peptide M9
pdb|1JGD|A Chain A, Hla-B2709 Bound To Deca-Peptide S10r
pdb|1OF2|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The
Vasoactive Intestinal Peptide Type 1 Receptor (Vipr)
Peptide (Residues 400-408)
pdb|1UXW|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The Latent
Membrane Protein 2 Peptide (Lmp2) Of Epstein-Barr Virus
pdb|1W0W|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The
Self-Peptide Tis From Egf-Response Factor 1
pdb|3B3I|A Chain A, Citrullination-dependent Differential Presentation Of A
Self-peptide By Hla-b27 Subtypes
pdb|3BP7|A Chain A, The High Resolution Crystal Structure Of Hla-B2709 In
Complex With A Cathepsin A Signal Sequence Peptide,
Pcata
pdb|3CZF|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The Glucagon
Receptor (Gr) Peptide (Residues 412-420)
pdb|3HCV|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The Double
Citrullinated Vasoactive Intestinal Peptide Type 1
Receptor (Vipr) Peptide (Residues 400-408)
Length = 276
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 54 AKAAEEFKFYLEGKCLEMIQN 74
A+ AE+ + YLEG+C+E ++
Sbjct: 150 ARVAEQLRAYLEGECVEWLRR 170
>pdb|2BSR|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
Immunodominant Viral Peptides Complexed To Hla-B2705
pdb|2BSS|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
Immunodominant Viral Peptides Complexed To Hla-B2705
Length = 276
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 54 AKAAEEFKFYLEGKCLEMIQN 74
A+ AE+ + YLEG+C+E ++
Sbjct: 150 ARVAEQLRAYLEGECVEWLRR 170
>pdb|3D18|A Chain A, Crystal Structure Of Hla-B2709 Complexed With A Variant Of
The Latent Membrane Protein 2 Peptide (Lmp2(L)) Of
Epstein-Barr Virus
Length = 276
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 54 AKAAEEFKFYLEGKCLEMIQN 74
A+ AE+ + YLEG+C+E ++
Sbjct: 150 ARVAEQLRAYLEGECVEWLRR 170
>pdb|1MHC|A Chain A, Model Of Mhc Class I H2-M3 With Nonapeptide From Rat Nd1
Refined At 2.3 Angstroms Resolution
pdb|1MHC|D Chain D, Model Of Mhc Class I H2-M3 With Nonapeptide From Rat Nd1
Refined At 2.3 Angstroms Resolution
Length = 282
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 54 AKAAEEFKFYLEGKCLEMIQN 74
A AE F+ Y+EG+CLE++
Sbjct: 150 AGTAEYFRAYVEGECLELLHR 170
>pdb|3FKF|A Chain A, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|B Chain B, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|C Chain C, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|D Chain D, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
Length = 148
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 41 PYISLVHEKYQSLAKAAEEFK 61
PY SL +EK + L+++AE F+
Sbjct: 12 PYFSLPNEKGEKLSRSAERFR 32
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 111 PYISLVHEKYQSLAKAAEEFK 131
PY SL +EK + L+++AE F+
Sbjct: 12 PYFSLPNEKGEKLSRSAERFR 32
>pdb|3E2H|A Chain A, Structure Of The M67 High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|3E3Q|A Chain A, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|B Chain B, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|CC Chain c, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|H Chain H, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|L Chain L, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|P Chain P, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|U Chain U, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
pdb|3E3Q|Y Chain Y, Structure Of The 3alpham13 High-Affinity Mutant Of The 2c
Tcr In Complex With LdQL9
Length = 175
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A AAE ++ YLEG+C+E +
Sbjct: 150 AGAAEYYRAYLEGECVEWLH 169
>pdb|3ERY|A Chain A, Different Thermodynamic Binding Mechanisms And Peptide
Fine Specificities Associated With A Panel Of
Structurally Similar High-Affinity T Cell Receptors
pdb|3ERY|B Chain B, Different Thermodynamic Binding Mechanisms And Peptide
Fine Specificities Associated With A Panel Of
Structurally Similar High-Affinity T Cell Receptors
Length = 174
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A AAE ++ YLEG+C+E +
Sbjct: 150 AGAAEYYRAYLEGECVEWLH 169
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEI--LIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
++ ++C++ PT GGK+L +I L++ L + + P ISL ++ L
Sbjct: 37 VLSGRDCLVVXPTGGGKSLCYQIPALLLNGL------TVVVSPLISLXKDQVDQLQANG- 89
Query: 59 EFKFYLEGKCLEMIQNKNCVLSIPT 83
+ CL Q + L + T
Sbjct: 90 -----VAAACLNSTQTREQQLEVXT 109
Score = 26.2 bits (56), Expect = 6.2, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEI--LIMKELKIKQKSAIFILPYISLVHEKYQSL 123
++ ++C++ PT GGK+L +I L++ L + + P ISL ++ L
Sbjct: 37 VLSGRDCLVVXPTGGGKSLCYQIPALLLNGL------TVVVSPLISLXKDQVDQL 85
>pdb|2HJK|A Chain A, Crystal Structure Of Hla-B5703 And Hiv-1 Peptide
pdb|2HJL|A Chain A, Crystal Structure Of Hla-B5703 And Hiv-1 Peptide
Length = 274
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN 74
++ K+++ A+ AE+ + YLEG C+E ++
Sbjct: 142 IIQRKWEA-ARVAEQLRAYLEGLCVEWLRR 170
>pdb|2YPL|A Chain A, Structural Features Underlying T-cell Receptor Sensitivity
To Concealed Mhc Class I Micropolymorphisms
Length = 274
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN 74
++ K+++ A+ AE+ + YLEG C+E ++
Sbjct: 142 IIQRKWEA-ARVAEQLRAYLEGLCVEWLRR 170
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA 106
A+A+ E + L +E+ Q KN ++ +PT GKT V + L K+K++
Sbjct: 24 ARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS 80
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 26.2 bits (56), Expect = 6.1, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 12 PTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEM 71
P GG EI K + ++K ++ + P L+ E + K E + + +
Sbjct: 11 PVCGGDLESKEI--EKHVCFRKKRSLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRI 68
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
++ ++ + PT GKT G + + L +K K I P LV + +++ K AE+
Sbjct: 69 LRKESFAATAPTGVGKTSFGLAMSLF-LALKGKRCYVIFPTSLLVIQAAETIRKYAEK 125
>pdb|1ESI|A Chain A, R248l Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42
K C++ T GGKT++G +L + + A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPALESDATKIMNY 258
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112
K C++ T GGKT++G +L + + A I+ Y
Sbjct: 221 KYCLVFAATRGGKTVIGTVLASTSIPALESDATKIMNY 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,502,750
Number of Sequences: 62578
Number of extensions: 117035
Number of successful extensions: 553
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 102
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)