BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2029
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 63 YLE 65
++E
Sbjct: 370 FVE 372
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +QK + ILPY+++V EK SL+ E F
Sbjct: 310 ERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGF 369
Query: 133 YLE 135
++E
Sbjct: 370 FVE 372
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 63 YLE 65
++E
Sbjct: 411 FVE 413
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ KN + S+PTSGGKTLV EIL+++EL +K + ILPY+++V EK L+ E F
Sbjct: 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGF 410
Query: 133 YLE 135
++E
Sbjct: 411 FVE 413
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 17/95 (17%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCL---EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK 102
V EKY S F + +CL ++++ KN V S PTS GKTLV E+LI+K +
Sbjct: 80 VLEKYHSFGVKK---MFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEM 136
Query: 103 QKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEVL 137
+K A+FILP++S+ EK K+YL+ L
Sbjct: 137 RKKALFILPFVSVAKEK-----------KYYLQSL 160
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ KN V S PTS GKTLV E+LI+K + +K A+FILP++S+ EK L +E
Sbjct: 105 VLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 164
Query: 61 KFYLEG 66
++G
Sbjct: 165 GIKVDG 170
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLSEGGKAVYLVPLKALAEEKYREFKE 90
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+++ KN VL+IPT+ GKTLV EI+++ +L + A++++P +L EKY+ +
Sbjct: 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKLLSEGGKAVYLVPLKALAEEKYREFKE 90
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAK 55
+ +NKN ++SIPT+ GKTL+GE+ ++ L K IFI+P +L EKY+
Sbjct: 29 LDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKS 88
Query: 56 AAEEF 60
E +
Sbjct: 89 KYERY 93
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
+NKN ++SIPT+ GKTL+GE+ ++ L K IFI+P +L EKY+
Sbjct: 31 KNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKSKY 90
Query: 128 EEF 130
E +
Sbjct: 91 ERY 93
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ KN ++SIPT+ GKTL+ EI ++ + + A++I+P +L EK+Q
Sbjct: 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEF 88
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ KN ++SIPT+ GKTL+ EI ++ + + A++I+P +L EK+Q
Sbjct: 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEF 88
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ KN ++S+PT+ GKTL+ I + K K KS I+I+P SL EKY+ L++ E
Sbjct: 36 KGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKS-IYIVPLRSLAMEKYEELSRLRE 90
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+ KN ++S+PT+ GKTL+ I + K K KS I+I+P SL EKY+ L++ E
Sbjct: 36 KGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKS-IYIVPLRSLAMEKYEELSRLRE 90
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 65 EGKCLEM--IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ + +EM ++ KN + +IPT+ GKTL+ E+ ++K ++ K A++I+P +L EK++
Sbjct: 28 QAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGGK-ALYIVPLRALASEKFER 86
Query: 123 LAKAA 127
+ A
Sbjct: 87 FKELA 91
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57
+++ KN + +IPT+ GKTL+ E+ ++K ++ K A++I+P +L EK++ + A
Sbjct: 36 LLEKKNLLAAIPTASGKTLLAELAMIKAIREGGK-ALYIVPLRALASEKFERFKELA 91
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEM------------IQNKNCVLSIPTSGGKTLVGEILIM 96
K +SL E +FYL +E+ ++ +N + +IPT+ GKTL+ E+ ++
Sbjct: 2 KIESLDLPDEVKQFYLNSGIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAML 61
Query: 97 KELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
K + K A++I+P +L EK++ + +E
Sbjct: 62 KSILAGGK-ALYIVPLRALASEKFRRFREFSE 92
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ +N + +IPT+ GKTL+ E+ ++K + K A++I+P +L EK++ + +E
Sbjct: 36 LLEGRNLLAAIPTASGKTLLAELAMLKSILAGGK-ALYIVPLRALASEKFRRFREFSE 92
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 187
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 188 TSPIKALSNQKYREM---YEEFQ 207
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+ E I L+ KQ+ IF P +L ++KY+ + EEF+
Sbjct: 153 NNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIFTSPIKALSNQKYREM---YEEFQ 207
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 53 LAKAAEEFKFYLEGKCLEMIQ----NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 108
+ KAA+E+ F L+ E IQ N++ ++S TS GKT+ E I L+ KQ+ IF
Sbjct: 127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIF 185
Query: 109 ILPYISLVHEKYQSLAKAAEEFK 131
P +L ++KY+ + EEF+
Sbjct: 186 TSPIKALSNQKYREM---YEEFQ 205
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+ E I L+ KQ+ IF P +L ++KY+ + EEF+
Sbjct: 151 NNQSVLVSAHTSAGKTVCAEYAIALALREKQR-VIFTSPIKALSNQKYREM---YEEFQ 205
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+++ +N +++IPT+ GKTL+ EI I +L + A++I+P +L EK++
Sbjct: 36 VLEGENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEKFREF 88
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+++ +N +++IPT+ GKTL+ EI I +L + A++I+P +L EK++
Sbjct: 36 VLEGENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEKFREF 88
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+I++K +++ PT+ GKTL+ E+ ++ L K AI++ P +L EKY + K E+
Sbjct: 39 LIEDKRLLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRALTSEKYSTF-KDWEKL 97
Query: 131 KFYLEV 136
F + V
Sbjct: 98 GFKVGV 103
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++++K +++ PT+ GKTL+ E+ ++ L K AI++ P +L EKY +
Sbjct: 39 LIEDKRLLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRALTSEKYSTF 91
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+++ +N +++IPT+ GKTL+ EI I+ L + A++++P +L EK++ E
Sbjct: 36 ILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEKFKEFKDWEE 93
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ +N +++IPT+ GKTL+ EI I+ L + A++++P +L EK++ E
Sbjct: 36 ILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEKFKEFKDWEE 93
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
++ KN + +IPT+ GKTL+ E+ ++K + K AI+I+P +L EKY
Sbjct: 36 LLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGK-AIYIVPLKALASEKY 84
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
++ KN + +IPT+ GKTL+ E+ ++K + K AI+I+P +L EKY
Sbjct: 36 LLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGK-AIYIVPLKALASEKY 84
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB
/ ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 57
++KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L EK+ K
Sbjct: 31 KSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKALASEKFDEFQKKY 90
Query: 58 EEF 60
E +
Sbjct: 91 ETY 93
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKEL-----KIKQKSAIFILPYISLVHEKYQSLAKAA 127
++KN ++ IPT+ GKTL+GE+ ++ + + K +FI+P +L EK+ K
Sbjct: 31 KSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKALASEKFDEFQKKY 90
Query: 128 EEF 130
E +
Sbjct: 91 ETY 93
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 59 EFKFYLEGK-CLEMI-QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
+F+ Y + +E I + +N V+S+PT+ GKTL+ I + + KS I+I+P SL
Sbjct: 20 DFQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKS-IYIVPLRSLA 78
Query: 117 HEKYQSLAK 125
EK+ L++
Sbjct: 79 MEKFSELSR 87
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ +N V+S+PT+ GKTL+ I + + KS I+I+P SL EK+ L++
Sbjct: 36 KGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKS-IYIVPLRSLAMEKFSELSR 87
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 65 EGKCLE--MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122
+ C+E ++ KN +++IPT+ GKTL+ E+ + + + K ++I+P +L EKY+
Sbjct: 28 QAACVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGK-CLYIVPLKALASEKYEE 86
Query: 123 LA 124
Sbjct: 87 FG 88
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
++ KN +++IPT+ GKTL+ E+ + + + K ++I+P +L EKY+
Sbjct: 36 LLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGK-CLYIVPLKALASEKYEEFG 88
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
+++ KN + +IPT+ GKTL+ E+ ++K + K A++I+P +L EK++ +E
Sbjct: 36 LLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGK-ALYIVPLRALASEKFRRFQDFSE 92
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+++ KN + +IPT+ GKTL+ E+ ++K + K A++I+P +L EK++ +E
Sbjct: 36 LLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGK-ALYIVPLRALASEKFRRFQDFSE 92
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEM------------IQNKNCVLSIPTSGGKTLVGEILIM 96
K +SL E +FY LE+ ++ KN + +IPT+ GKTL+ E+ ++
Sbjct: 2 KIESLDLPDEIKRFYENSGILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAML 61
Query: 97 KELKIKQKSAIFILPYISLVHEKYQ 121
K + + A++I+P +L EK++
Sbjct: 62 KSV-LNGGKALYIVPLRALASEKFR 85
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 51
+++ KN + +IPT+ GKTL+ E+ ++K + + A++I+P +L EK++
Sbjct: 36 LLEGKNLLAAIPTASGKTLLAELAMLKSV-LNGGKALYIVPLRALASEKFR 85
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rrnAC2876 PE=3 SV=1
Length = 799
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+ + +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF
Sbjct: 37 VTEGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEF 91
Query: 61 KFY 63
+ Y
Sbjct: 92 EQY 94
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132
+ +N V SIPT+ GKTL+ E+ ++ + + A++I+P +L EK EEF+
Sbjct: 39 EGENLVASIPTASGKTLIAELAMLSSVA-RGGKALYIVPLRALASEKQADF----EEFEQ 93
Query: 133 Y 133
Y
Sbjct: 94 Y 94
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
++ K +++ PT+ GKTL+ E+ ++ L K AI+I P +L +EKY +
Sbjct: 39 LLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNEKYNTF 91
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ K +++ PT+ GKTL+ E+ ++ L K AI+I P +L +EKY +
Sbjct: 39 LLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNEKYNTF 91
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 53
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSA-----IFILPYISLVHEKYQSL 123
N+NC++S PT GKT++ E+ I++ +K I+I P SL +E Y++
Sbjct: 154 NENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 28 ELKIKQKSAIFILPYISLVH-EKYQSLAKAAEEFKFYLEG------KCLEMIQNKNCVLS 80
EL+ + + + I P V K++S A + F L+ C+E + ++ ++S
Sbjct: 162 ELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIE--RQESVLVS 219
Query: 81 IPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
TS GKT+V E + + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 220 AHTSAGKTVVAEYAVAQSLRDKQR-VIYTSPIKALSNQKYREL 261
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+ ++ ++S TS GKT+V E + + L+ KQ+ I+ P +L ++KY+ L
Sbjct: 212 RQESVLVSAHTSAGKTVVAEYAVAQSLRDKQR-VIYTSPIKALSNQKYREL 261
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0191.1 PE=3 SV=2
Length = 735
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54
+ +N V++ PT GKT + + I+ L A +++P S+ +EKY S +
Sbjct: 42 KGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFS 93
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+ +N V++ PT GKT + + I+ L A +++P S+ +EKY S +
Sbjct: 42 KGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFS 93
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
++ V S+PT+ GKTLV ++ ++ + + +A++I+P +L EK + A A EE+
Sbjct: 41 ESLVASVPTASGKTLVAQLAMLSAID-RGGTALYIVPLRALASEKREEFA-AFEEY 94
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ V S+PT+ GKTLV ++ ++ + + +A++I+P +L EK + A A EE+
Sbjct: 41 ESLVASVPTASGKTLVAQLAMLSAID-RGGTALYIVPLRALASEKREEFA-AFEEY 94
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
++ + ++ TS GKTL+GE+ +K L K +F++P ++L ++KY + E+
Sbjct: 224 LLNGDDLLIISATSSGKTLIGELAGIKNLIKTGKKFLFLVPLVALANQKYLEFKERYEKL 283
Query: 131 KF 132
F
Sbjct: 284 GF 285
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 13 TSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
TS GKTL+GE+ +K L K +F++P ++L ++KY + E+ F
Sbjct: 236 TSSGKTLIGELAGIKNLIKTGKKFLFLVPLVALANQKYLEFKERYEKLGF 285
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
N +++IPT+ GKTL+G I +K + ++ I+ +P +S+ +EK + K E
Sbjct: 40 NYIIAIPTASGKTLLGIIAALKTV-MEGGRVIYTVPLLSIQNEKIKEFRKLEE 91
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
N +++IPT+ GKTL+G I +K + ++ I+ +P +S+ +EK + K E
Sbjct: 40 NYIIAIPTASGKTLLGIIAALKTV-MEGGRVIYTVPLLSIQNEKIKEFRKLEE 91
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
N++ ++S TS GKT+V I K L+ KQ+ I+ P +L ++KY+ L EEFK
Sbjct: 140 NQSVLVSAHTSAGKTVVATYAIAKCLREKQR-VIYTSPIKALSNQKYREL---EEEFK 193
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131
N++ ++S TS GKT+V I K L+ KQ+ I+ P +L ++KY+ L EEFK
Sbjct: 140 NQSVLVSAHTSAGKTVVATYAIAKCLREKQR-VIYTSPIKALSNQKYREL---EEEFK 193
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY--LEGKCLEMIQNKNC--VLSIPTSGGKTLVGEILI 95
LP +L H +Y+ L K F + ++ + + + +C +L PT GKT+ E+ I
Sbjct: 1317 LPVTALGHPEYEVLYK----FTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAI 1372
Query: 96 MKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
+ K A++I P +LV E+ + EE
Sbjct: 1373 FRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEE 1407
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
N +L PT GKT+ E+ I + K A++I P +LV E+ + EE
Sbjct: 1353 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEE 1407
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120
++ +L+ PT GKTL+ E+ I+ L AI++ P +L +EKY
Sbjct: 36 LLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKY 85
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50
++ +L+ PT GKTL+ E+ I+ L AI++ P +L +EKY
Sbjct: 36 LLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKY 85
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica
GN=DCL1 PE=3 SV=1
Length = 1883
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 57 AEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIM----KELKIKQKS-AIFILP 111
AEE + + LE +++N + + T GKTL+ +LI K LK +K A+F++P
Sbjct: 263 AEERARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVP 322
Query: 112 YISLVHEKYQSLAKAAE 128
+ LV YQ L A+
Sbjct: 323 KVPLV---YQVLVMTAQ 336
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIM----KELKIKQKS-AIFILPYISLVHEKYQSLAKAA 57
+++N + + T GKTL+ +LI K LK +K A+F++P + LV YQ L A
Sbjct: 279 KSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPLV---YQVLVMTA 335
Query: 58 E 58
+
Sbjct: 336 Q 336
>sp|Q3UFS4|CCD75_MOUSE Coiled-coil domain-containing protein 75 OS=Mus musculus GN=Ccdc75
PE=2 SV=2
Length = 262
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 20 VGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEM 71
G+ I E +K+K+ + Y +H K Q+ AKAAEEF+ L+ K EM
Sbjct: 105 TGKSGIGHESSLKRKAEERLENYRRKIHMKNQNEAKAAEEFRMRLKSKQDEM 156
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 40 LPYISLVHEKYQSLAKAAEEFKFY--LEGKCLEMI--QNKNCVLSIPTSGGKTLVGEILI 95
LP +L + +Y+SL K F Y ++ + + + N +L PT GKT+ E+ I
Sbjct: 870 LPITALGNREYESLYK----FTHYNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAI 925
Query: 96 MKELKIKQKS-AIFILPYISLVHEKYQSLAKAAEE 129
+ + S ++I P +LV E+ + EE
Sbjct: 926 FRVFNMYPTSKVVYIAPLKALVRERIEDWKIRIEE 960
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-AIFILPYISLVHEKYQSLAKAAEE 59
+ N +L PT GKT+ E+ I + + S ++I P +LV E+ + EE
Sbjct: 904 DTNVLLGAPTGSGKTIAAEMAIFRVFNMYPTSKVVYIAPLKALVRERIEDWKIRIEE 960
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
+ ++ ++S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 163 RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYREL 212
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
+ ++ ++S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 163 RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYREL 212
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS--------AIFILPYISLVHEKYQS 52
+ + N V S+PT+ GKTL+ ++ ++ + S A++I+P +L EK Q
Sbjct: 37 VTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRALAGEKAQE 96
Query: 53 LAKAAEEF 60
+A E F
Sbjct: 97 F-EAFERF 103
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS 105
V E Y A+A E + + N V S+PT+ GKTL+ ++ ++ + S
Sbjct: 22 VEELYPPQAEAVER----------GVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDS 71
Query: 106 --------AIFILPYISLVHEKYQSLAKAAEEF 130
A++I+P +L EK Q +A E F
Sbjct: 72 PTFSGDGTALYIVPLRALAGEKAQEF-EAFERF 103
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS--------AIFILPYISLVHEKYQS 52
+ + N V S+PT+ GKTL+ ++ ++ + S A++I+P +L EK Q
Sbjct: 37 VTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRALAGEKAQE 96
Query: 53 LAKAAEEF 60
+A E F
Sbjct: 97 F-EAFERF 103
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS 105
V E Y A+A E + + N V S+PT+ GKTL+ ++ ++ + S
Sbjct: 22 VEELYPPQAEAVER----------GVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDS 71
Query: 106 --------AIFILPYISLVHEKYQSLAKAAEEF 130
A++I+P +L EK Q +A E F
Sbjct: 72 PTFSGDGTALYIVPLRALAGEKAQEF-EAFERF 103
>sp|O51934|RGYR_THEMA Reverse gyrase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rgy PE=1 SV=1
Length = 1104
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE- 59
+VQ K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADEK 148
Query: 60 ---FKFY 63
F FY
Sbjct: 149 VKIFGFY 155
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE- 129
++Q K+ + PT GKT G + + + +KSA+ + P ++LV + + L K A+E
Sbjct: 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSAL-VFPTVTLVKQTLERLQKLADEK 148
Query: 130 ---FKFY 133
F FY
Sbjct: 149 VKIFGFY 155
>sp|Q8ZXT5|RGYR_PYRAE Reverse gyrase OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 /
DSM 7523 / JCM 9630 / NBRC 100827) GN=rgy PE=3 SV=1
Length = 1228
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ-KSAIFILPYISLVHEKYQSLAKAAE 58
V+ K+ + PT GKT ILI KQ K A+ I P +L H+ Y+ L AE
Sbjct: 96 VRGKSFAIVAPTGSGKTTF--ILIATLYSAKQGKRALLIFPTSALAHQAYKKLLTFAE 151
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ-KSAIFILPYISLVHEKYQSLAKAAEEF 130
++ K+ + PT GKT ILI KQ K A+ I P +L H+ Y+ L AE
Sbjct: 96 VRGKSFAIVAPTGSGKTTF--ILIATLYSAKQGKRALLIFPTSALAHQAYKKLLTFAERG 153
Query: 131 KFYLEVL 137
L+ L
Sbjct: 154 GVSLKAL 160
>sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis (strain RS) GN=DCL2
PE=3 SV=3
Length = 1435
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 66 GKCLEMIQN---KNCVLSIPTSGGKTLVGEILIMKELK--IKQKSAIFILPYISLVHEKY 120
G LEM+ +N ++++ T GKT + + I +EL+ K F+ P ++LV +++
Sbjct: 49 GYQLEMLSESLRQNIIVAMDTGSGKTEIAILRIQRELERCPAHKFVWFMAPTVALVEQQH 108
Query: 121 QSLAKAAEEFKFYL 134
+++K F+ L
Sbjct: 109 SAISKQLPAFQTRL 122
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 5 KNCVLSIPTSGGKTLVGEILIMKELK--IKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+N ++++ T GKT + + I +EL+ K F+ P ++LV +++ +++K F+
Sbjct: 61 QNIIVAMDTGSGKTEIAILRIQRELERCPAHKFVWFMAPTVALVEQQHSAISKQLPAFQT 120
Query: 63 YL 64
L
Sbjct: 121 RL 122
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELK-IKQKSAIFILPYISLVHEK 49
N+N + PT GKT+V E+ I K K ++I P +LV E+
Sbjct: 1155 NENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRER 1201
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELK-IKQKSAIFILPYISLVHEK 119
N+N + PT GKT+V E+ I K K ++I P +LV E+
Sbjct: 1155 NENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRER 1201
>sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dcl-1
PE=2 SV=1
Length = 1584
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 3 QNKNCVLSIPTSGGKTLVGEIL----IMKELKIKQKS-----AIFILPYISLVHEKYQSL 53
+ +N + + T GKTL+ +L I EL+ ++K A F++ ++LV +++ L
Sbjct: 134 KQQNTIAVLDTGSGKTLIAAMLLRWVITGELEDREKGLPRRIAFFLVDKVALVFQQHSFL 193
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
K F +E C EM++
Sbjct: 194 TK---NLDFPMEKLCGEMVE 210
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 35 SAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
+ + +LP I E+ + + E++ L E + +N + + T GKTL+ +L
Sbjct: 103 AGVDVLPAIGFDSER---IITSPREYQVEL----FERAKQQNTIAVLDTGSGKTLIAAML 155
Query: 95 ----IMKELKIKQKS-----AIFILPYISLVHEKYQSLAK 125
I EL+ ++K A F++ ++LV +++ L K
Sbjct: 156 LRWVITGELEDREKGLPRRIAFFLVDKVALVFQQHSFLTK 195
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
N +L PT GKT+ E+ I + K A++I P +LV E+ EE
Sbjct: 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEE 1398
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
N +L PT GKT+ E+ I + K A++I P +LV E+ EE
Sbjct: 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEE 1398
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
N +L PT GKT+ E+ I + K A++I P +LV E+ EE
Sbjct: 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEE 1398
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
N +L PT GKT+ E+ I + K A++I P +LV E+ EE
Sbjct: 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEE 1398
>sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic OS=Solanum lycopersicum GN=SK PE=1
SV=1
Length = 300
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEIL 94
++ ++L AEE + YL+G+C+ ++ C GKT VG IL
Sbjct: 86 DEIETLKNKAEEVEEYLDGRCVYLVGMMGC--------GKTTVGRIL 124
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
N +L PT GKT+ E+ I + K A++I P +LV E+ EE
Sbjct: 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEE 1399
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
N +L PT GKT+ E+ I + K A++I P +LV E+ EE
Sbjct: 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEE 1399
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 6 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 59
N +L PT GKT+ E+ I + K A++I P +LV E+ EE
Sbjct: 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEE 1399
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 76 NCVLSIPTSGGKTLVGEILIMKEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
N +L PT GKT+ E+ I + K A++I P +LV E+ EE
Sbjct: 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEE 1399
>sp|P20703|UVSW_BPT4 ATP-dependent DNA helicase uvsW OS=Enterobacteria phage T4 GN=uvsW
PE=1 SV=2
Length = 587
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 62 FYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 116
+Y + E + N+ +L++PTS GK+L+ +L L+ + + I+P +L
Sbjct: 116 WYQKDAVFEGLVNRRRILNLPTSAGKSLIQALLARYYLENYEGKILIIVPTTALT 170
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123
C ++ K+C + +PT GGK+L ++ +K I I P +SL+ ++ +L
Sbjct: 215 CRASMERKDCFVLMPTGGGKSLCYQL----PATLKAGVTIVISPLLSLIQDQIVAL 266
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 53
++ K+C + +PT GGK+L ++ +K I I P +SL+ ++ +L
Sbjct: 219 MERKDCFVLMPTGGGKSLCYQL----PATLKAGVTIVISPLLSLIQDQIVAL 266
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSA----------IFILPYISLVHEKYQS 52
+ N +LS PTS GKT V + I+ E+ K + + + ++I P SLV E +
Sbjct: 567 DNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGN 626
Query: 53 LAK 55
+K
Sbjct: 627 FSK 629
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKEL-KIKQKSA----------IFILPYISLVHEKYQS 122
+ N +LS PTS GKT V + I+ E+ K + + + ++I P SLV E +
Sbjct: 567 DNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGN 626
Query: 123 LAK 125
+K
Sbjct: 627 FSK 629
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40
N N +S PT+ GKT+ EI +++ K K+ + L
Sbjct: 1413 NDNAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVYL 1449
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 74 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 110
N N +S PT+ GKT+ EI +++ K K+ + L
Sbjct: 1413 NDNAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVYL 1449
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,394,078
Number of Sequences: 539616
Number of extensions: 1565247
Number of successful extensions: 5765
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 5621
Number of HSP's gapped (non-prelim): 199
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)