Query psy2029
Match_columns 138
No_of_seqs 151 out of 1830
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 22:23:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dkp_A Probable ATP-dependent 99.6 7.1E-16 2.4E-20 108.8 8.4 92 45-136 36-131 (245)
2 3ly5_A ATP-dependent RNA helic 99.6 6.5E-16 2.2E-20 110.4 7.9 92 45-136 61-159 (262)
3 3fe2_A Probable ATP-dependent 99.6 1E-15 3.5E-20 108.0 8.4 92 45-136 36-135 (242)
4 3ber_A Probable ATP-dependent 99.6 3.9E-15 1.3E-19 105.7 9.2 92 45-136 50-144 (249)
5 2pl3_A Probable ATP-dependent 99.6 4E-15 1.4E-19 104.4 8.8 92 45-136 32-130 (236)
6 1qde_A EIF4A, translation init 99.6 3.7E-15 1.3E-19 103.6 8.2 93 44-136 20-115 (224)
7 4f92_B U5 small nuclear ribonu 99.6 1.8E-15 6.2E-20 130.2 7.6 98 40-137 906-1007(1724)
8 1vec_A ATP-dependent RNA helic 99.6 3.9E-15 1.4E-19 102.2 7.4 91 45-135 10-104 (206)
9 3iuy_A Probable ATP-dependent 99.6 6.6E-15 2.3E-19 102.8 8.6 83 45-127 27-118 (228)
10 2oxc_A Probable ATP-dependent 99.6 4.8E-15 1.6E-19 103.8 7.8 91 45-135 31-125 (230)
11 1q0u_A Bstdead; DEAD protein, 99.6 4.5E-15 1.6E-19 103.1 6.4 86 45-130 11-99 (219)
12 1t6n_A Probable ATP-dependent 99.6 8.9E-15 3E-19 101.5 7.5 91 45-135 21-115 (220)
13 3bor_A Human initiation factor 99.6 5.4E-15 1.9E-19 104.0 6.4 91 45-135 37-130 (237)
14 2db3_A ATP-dependent RNA helic 99.6 1.1E-14 3.8E-19 110.7 8.5 91 45-135 63-161 (434)
15 2i4i_A ATP-dependent RNA helic 99.5 1.5E-14 5.3E-19 108.4 8.8 91 45-135 22-133 (417)
16 4f92_B U5 small nuclear ribonu 99.5 1.2E-14 4.1E-19 125.1 8.4 81 57-137 76-168 (1724)
17 3fmo_B ATP-dependent RNA helic 99.5 2.1E-14 7.3E-19 104.6 7.7 86 45-130 99-189 (300)
18 1wrb_A DJVLGB; RNA helicase, D 99.5 5.7E-15 1.9E-19 104.6 4.2 88 48-135 33-132 (253)
19 2gxq_A Heat resistant RNA depe 99.5 4.2E-14 1.5E-18 97.0 7.4 85 45-129 8-98 (207)
20 2z0m_A 337AA long hypothetical 99.5 7.4E-14 2.5E-18 101.7 8.4 86 47-136 3-89 (337)
21 2j0s_A ATP-dependent RNA helic 99.5 5E-14 1.7E-18 105.6 7.5 92 45-136 44-138 (410)
22 1s2m_A Putative ATP-dependent 99.5 7.4E-14 2.5E-18 104.2 7.5 93 44-136 27-122 (400)
23 1fuu_A Yeast initiation factor 99.5 5.2E-14 1.8E-18 104.6 6.2 93 44-136 27-122 (394)
24 1xti_A Probable ATP-dependent 99.5 1.3E-13 4.5E-18 102.4 7.9 91 45-135 15-109 (391)
25 3eiq_A Eukaryotic initiation f 99.5 1.4E-13 4.7E-18 103.0 7.8 93 44-136 46-141 (414)
26 3oiy_A Reverse gyrase helicase 99.5 2.2E-13 7.6E-18 102.5 8.7 84 52-137 13-97 (414)
27 3pey_A ATP-dependent RNA helic 99.4 2.1E-13 7.1E-18 101.2 7.7 91 45-135 12-107 (395)
28 2zj8_A DNA helicase, putative 99.4 1.6E-13 5.6E-18 110.0 7.3 92 45-137 8-101 (720)
29 2va8_A SSO2462, SKI2-type heli 99.4 2.7E-13 9.2E-18 108.6 8.3 92 45-137 15-108 (715)
30 1hv8_A Putative ATP-dependent 99.4 2.8E-13 9.5E-18 99.6 7.7 91 45-135 13-106 (367)
31 3i5x_A ATP-dependent RNA helic 99.4 2.3E-13 8E-18 106.0 7.3 84 45-128 79-171 (563)
32 3fe2_A Probable ATP-dependent 99.4 1.9E-13 6.4E-18 96.3 5.3 58 2-59 64-128 (242)
33 3fht_A ATP-dependent RNA helic 99.4 4.9E-13 1.7E-17 99.8 7.7 87 44-130 31-122 (412)
34 3sqw_A ATP-dependent RNA helic 99.4 5.8E-13 2E-17 104.5 7.5 84 45-128 28-120 (579)
35 2p6r_A Afuhel308 helicase; pro 99.4 2.8E-13 9.5E-18 108.4 5.7 91 45-137 10-101 (702)
36 3ly5_A ATP-dependent RNA helic 99.4 1.6E-13 5.5E-18 98.0 3.5 57 2-58 89-151 (262)
37 3tbk_A RIG-I helicase domain; 99.4 1.6E-12 5.5E-17 100.4 9.1 78 60-137 4-86 (555)
38 3fmp_B ATP-dependent RNA helic 99.4 7.3E-13 2.5E-17 101.5 7.1 86 44-129 98-188 (479)
39 4a2p_A RIG-I, retinoic acid in 99.4 2E-12 6.8E-17 100.0 9.3 79 59-137 6-89 (556)
40 2ykg_A Probable ATP-dependent 99.3 1.4E-12 4.9E-17 103.8 7.4 85 53-137 6-95 (696)
41 3ber_A Probable ATP-dependent 99.3 1.2E-12 4E-17 92.8 6.2 58 2-59 78-137 (249)
42 3iuy_A Probable ATP-dependent 99.3 1.3E-12 4.3E-17 91.1 6.2 56 2-57 55-118 (228)
43 1wrb_A DJVLGB; RNA helicase, D 99.3 9.5E-13 3.2E-17 93.1 5.2 58 2-59 58-126 (253)
44 3dkp_A Probable ATP-dependent 99.3 1.7E-12 5.9E-17 91.3 6.2 58 2-59 64-124 (245)
45 4a2q_A RIG-I, retinoic acid in 99.3 6.8E-12 2.3E-16 101.7 9.1 80 58-137 246-330 (797)
46 2db3_A ATP-dependent RNA helic 99.3 2.1E-12 7.3E-17 98.1 5.3 57 2-58 91-154 (434)
47 2pl3_A Probable ATP-dependent 99.3 4.7E-12 1.6E-16 88.6 6.5 57 2-58 60-122 (236)
48 1q0u_A Bstdead; DEAD protein, 99.3 3.2E-12 1.1E-16 88.6 5.0 57 2-58 39-97 (219)
49 3fmo_B ATP-dependent RNA helic 99.3 5E-12 1.7E-16 92.0 6.2 57 2-58 127-187 (300)
50 2v1x_A ATP-dependent DNA helic 99.3 9.5E-12 3.3E-16 98.1 8.2 78 45-126 28-107 (591)
51 3fho_A ATP-dependent RNA helic 99.3 2.8E-12 9.6E-17 99.3 5.0 88 47-134 128-220 (508)
52 2oxc_A Probable ATP-dependent 99.3 5.2E-12 1.8E-16 88.3 5.9 57 2-58 59-117 (230)
53 1vec_A ATP-dependent RNA helic 99.3 5.9E-12 2E-16 86.2 5.8 57 2-58 38-96 (206)
54 2i4i_A ATP-dependent RNA helic 99.3 1E-11 3.5E-16 93.0 7.2 57 2-58 50-126 (417)
55 1qde_A EIF4A, translation init 99.3 7.9E-12 2.7E-16 86.7 5.9 57 2-58 49-107 (224)
56 2gxq_A Heat resistant RNA depe 99.2 8.4E-12 2.9E-16 85.4 5.8 56 2-57 36-96 (207)
57 3bor_A Human initiation factor 99.2 5.3E-12 1.8E-16 88.7 4.7 57 2-58 65-123 (237)
58 1rif_A DAR protein, DNA helica 99.2 1.9E-11 6.5E-16 87.9 7.6 70 60-129 113-183 (282)
59 1gku_B Reverse gyrase, TOP-RG; 99.2 2E-11 6.9E-16 101.6 8.7 73 57-132 55-128 (1054)
60 4ddu_A Reverse gyrase; topoiso 99.2 2.8E-11 9.4E-16 101.1 9.1 75 60-136 78-153 (1104)
61 1t6n_A Probable ATP-dependent 99.2 1.1E-11 3.8E-16 85.8 5.8 56 2-57 49-106 (220)
62 3l9o_A ATP-dependent RNA helic 99.2 1.6E-11 5.6E-16 102.5 7.1 72 60-132 184-256 (1108)
63 3tbk_A RIG-I helicase domain; 99.2 1.2E-11 4E-16 95.5 5.7 57 2-58 17-77 (555)
64 1gm5_A RECG; helicase, replica 99.2 3.6E-11 1.2E-15 97.3 8.7 77 60-137 368-451 (780)
65 1oyw_A RECQ helicase, ATP-depe 99.2 2E-11 6.9E-16 94.9 6.9 79 44-126 8-88 (523)
66 4a2p_A RIG-I, retinoic acid in 99.2 1.6E-11 5.4E-16 95.0 5.8 57 2-58 20-80 (556)
67 3b6e_A Interferon-induced heli 99.2 2.9E-11 9.8E-16 83.0 6.3 74 60-134 33-113 (216)
68 2xgj_A ATP-dependent RNA helic 99.2 2.9E-11 9.8E-16 100.3 7.3 71 60-131 86-157 (1010)
69 2oca_A DAR protein, ATP-depend 99.2 4.8E-11 1.6E-15 92.0 7.9 70 60-129 113-183 (510)
70 1yks_A Genome polyprotein [con 99.2 1.4E-11 4.9E-16 93.9 4.9 56 1-56 5-60 (440)
71 3pey_A ATP-dependent RNA helic 99.2 1.4E-11 4.7E-16 91.3 4.2 54 5-58 45-100 (395)
72 3oiy_A Reverse gyrase helicase 99.2 2.6E-11 8.8E-16 91.2 5.7 55 2-57 34-88 (414)
73 4a2w_A RIG-I, retinoic acid in 99.2 4E-11 1.4E-15 98.8 7.2 80 58-137 246-330 (936)
74 3eiq_A Eukaryotic initiation f 99.2 5.3E-11 1.8E-15 88.9 7.0 57 2-58 75-133 (414)
75 1wp9_A ATP-dependent RNA helic 99.1 1.3E-10 4.6E-15 87.6 8.5 69 60-128 9-77 (494)
76 2z83_A Helicase/nucleoside tri 99.1 2.6E-11 8.9E-16 92.9 4.6 54 2-55 19-72 (459)
77 3i5x_A ATP-dependent RNA helic 99.1 8.1E-11 2.8E-15 91.7 7.4 54 3-56 110-169 (563)
78 2ykg_A Probable ATP-dependent 99.1 3.4E-11 1.2E-15 95.9 5.0 57 2-58 26-86 (696)
79 2v6i_A RNA helicase; membrane, 99.1 4.2E-11 1.4E-15 91.1 5.0 52 3-54 1-52 (431)
80 2va8_A SSO2462, SKI2-type heli 99.1 9.9E-11 3.4E-15 93.8 7.2 54 2-55 44-97 (715)
81 4a2q_A RIG-I, retinoic acid in 99.1 5.6E-11 1.9E-15 96.4 5.7 57 2-58 261-321 (797)
82 3l9o_A ATP-dependent RNA helic 99.1 8E-11 2.7E-15 98.4 6.8 55 2-57 197-251 (1108)
83 2j0s_A ATP-dependent RNA helic 99.1 6.1E-11 2.1E-15 88.8 5.2 56 2-57 72-129 (410)
84 2zj8_A DNA helicase, putative 99.1 6.4E-11 2.2E-15 95.0 5.6 55 2-56 37-91 (720)
85 4gl2_A Interferon-induced heli 99.1 5E-11 1.7E-15 95.0 4.9 70 60-129 7-83 (699)
86 3fht_A ATP-dependent RNA helic 99.1 1.4E-10 4.8E-15 86.5 6.9 54 4-57 64-119 (412)
87 2fsf_A Preprotein translocase 99.1 4.8E-10 1.7E-14 90.7 10.3 92 43-136 53-148 (853)
88 3fho_A ATP-dependent RNA helic 99.1 5.4E-11 1.8E-15 92.1 4.6 54 5-58 159-214 (508)
89 1xti_A Probable ATP-dependent 99.1 1.1E-10 3.8E-15 86.5 6.2 55 2-56 43-99 (391)
90 1oyw_A RECQ helicase, ATP-depe 99.1 2.8E-10 9.6E-15 88.5 8.6 52 2-57 38-89 (523)
91 2v1x_A ATP-dependent DNA helic 99.1 6.1E-10 2.1E-14 87.8 10.3 52 2-57 57-108 (591)
92 2xgj_A ATP-dependent RNA helic 99.1 1.1E-10 3.7E-15 96.9 6.3 55 2-57 99-153 (1010)
93 3fmp_B ATP-dependent RNA helic 99.1 9.2E-11 3.2E-15 89.8 5.4 53 5-57 132-186 (479)
94 3sqw_A ATP-dependent RNA helic 99.1 2.3E-10 7.9E-15 89.7 7.6 55 3-57 59-119 (579)
95 1s2m_A Putative ATP-dependent 99.1 1.1E-10 3.8E-15 87.0 5.4 56 2-57 56-113 (400)
96 2z0m_A 337AA long hypothetical 99.1 1.5E-10 5.1E-15 84.1 5.7 52 2-57 29-80 (337)
97 1fuu_A Yeast initiation factor 99.1 8.4E-11 2.9E-15 87.2 4.5 56 2-57 56-113 (394)
98 2whx_A Serine protease/ntpase/ 99.1 8.6E-11 2.9E-15 93.1 4.6 54 1-54 183-236 (618)
99 1tf5_A Preprotein translocase 99.1 7E-10 2.4E-14 89.8 9.7 78 56-136 80-157 (844)
100 4a4z_A Antiviral helicase SKI2 99.1 3.2E-10 1.1E-14 94.0 7.7 68 60-128 39-107 (997)
101 1rif_A DAR protein, DNA helica 99.1 1.8E-10 6.1E-15 82.7 5.4 55 3-57 127-181 (282)
102 2jlq_A Serine protease subunit 99.1 9.3E-11 3.2E-15 89.6 4.1 54 2-55 16-70 (451)
103 1gku_B Reverse gyrase, TOP-RG; 99.0 2.8E-10 9.6E-15 94.8 6.6 58 2-60 69-126 (1054)
104 3b6e_A Interferon-induced heli 99.0 2.1E-10 7.2E-15 78.6 5.0 56 2-57 46-107 (216)
105 1nkt_A Preprotein translocase 99.0 1.7E-09 5.8E-14 87.9 10.7 91 44-136 91-185 (922)
106 2eyq_A TRCF, transcription-rep 99.0 6.4E-10 2.2E-14 93.4 8.4 88 48-136 591-685 (1151)
107 1hv8_A Putative ATP-dependent 99.0 3E-10 1E-14 83.3 5.5 55 3-57 42-98 (367)
108 2oca_A DAR protein, ATP-depend 99.0 2.9E-10 9.8E-15 87.6 5.3 54 3-56 127-180 (510)
109 4a2w_A RIG-I, retinoic acid in 99.0 1.8E-10 6.1E-15 95.0 4.2 57 2-58 261-321 (936)
110 2p6r_A Afuhel308 helicase; pro 99.0 2.9E-10 9.9E-15 91.0 5.1 53 2-55 38-90 (702)
111 2whx_A Serine protease/ntpase/ 99.0 1.7E-10 5.7E-15 91.4 3.5 66 59-124 170-236 (618)
112 4a15_A XPD helicase, ATP-depen 99.0 5.5E-10 1.9E-14 88.5 6.3 57 2-58 20-76 (620)
113 2wv9_A Flavivirin protease NS2 99.0 3E-10 1E-14 90.7 4.9 54 3-56 240-293 (673)
114 2fwr_A DNA repair protein RAD2 99.0 9.3E-10 3.2E-14 84.0 7.1 63 60-126 93-156 (472)
115 4a15_A XPD helicase, ATP-depen 99.0 1.8E-09 6.2E-14 85.6 8.5 75 61-135 4-83 (620)
116 2jlq_A Serine protease subunit 99.0 2.2E-10 7.6E-15 87.5 2.9 63 61-124 5-69 (451)
117 4a4z_A Antiviral helicase SKI2 98.9 7.6E-10 2.6E-14 91.8 5.8 54 2-56 52-105 (997)
118 1wp9_A ATP-dependent RNA helic 98.9 1.8E-09 6.2E-14 81.4 7.2 55 2-57 22-76 (494)
119 4ddu_A Reverse gyrase; topoiso 98.9 6.4E-10 2.2E-14 93.0 5.2 55 2-57 91-145 (1104)
120 4gl2_A Interferon-induced heli 98.9 3E-10 1E-14 90.5 3.0 56 2-57 20-81 (699)
121 2z83_A Helicase/nucleoside tri 98.9 7.2E-10 2.5E-14 84.9 5.0 54 71-124 17-71 (459)
122 2wv9_A Flavivirin protease NS2 98.9 3.4E-10 1.2E-14 90.5 2.9 67 60-126 215-293 (673)
123 2fz4_A DNA repair protein RAD2 98.9 2.4E-09 8.3E-14 75.3 6.8 63 60-126 93-156 (237)
124 1yks_A Genome polyprotein [con 98.9 8.9E-10 3E-14 84.0 4.8 52 75-126 9-60 (440)
125 2v6i_A RNA helicase; membrane, 98.9 1.5E-09 5.3E-14 82.4 5.9 50 75-124 3-52 (431)
126 2ipc_A Preprotein translocase 98.9 8.5E-09 2.9E-13 84.0 9.5 75 60-136 79-153 (997)
127 1gm5_A RECG; helicase, replica 98.9 2.4E-09 8.2E-14 86.8 6.1 53 5-58 390-442 (780)
128 3llm_A ATP-dependent RNA helic 98.8 2.6E-08 9E-13 69.7 9.9 68 61-128 62-134 (235)
129 3crv_A XPD/RAD3 related DNA he 98.8 4.3E-09 1.5E-13 82.3 6.0 71 61-135 4-79 (551)
130 3crv_A XPD/RAD3 related DNA he 98.8 5.8E-09 2E-13 81.5 5.6 51 2-56 20-70 (551)
131 2fwr_A DNA repair protein RAD2 98.8 6E-09 2E-13 79.5 5.4 51 2-56 106-156 (472)
132 2fz4_A DNA repair protein RAD2 98.8 6.5E-09 2.2E-13 73.1 4.8 51 2-56 106-156 (237)
133 3llm_A ATP-dependent RNA helic 98.8 1.3E-08 4.6E-13 71.2 6.1 55 2-56 74-132 (235)
134 2eyq_A TRCF, transcription-rep 98.7 2.3E-08 7.9E-13 84.0 7.6 50 6-56 626-675 (1151)
135 2vl7_A XPD; helicase, unknown 98.7 9.8E-09 3.4E-13 80.1 5.0 51 2-56 24-74 (540)
136 1tf5_A Preprotein translocase 98.7 1.3E-08 4.3E-13 82.6 5.5 58 2-62 96-153 (844)
137 2fsf_A Preprotein translocase 98.7 1.1E-08 3.6E-13 83.0 4.8 58 2-62 87-144 (853)
138 3o8b_A HCV NS3 protease/helica 98.7 2E-08 6.8E-13 80.0 6.0 51 2-56 230-280 (666)
139 3rc3_A ATP-dependent RNA helic 98.7 3.3E-08 1.1E-12 79.0 6.4 51 2-57 153-203 (677)
140 2vl7_A XPD; helicase, unknown 98.7 5.3E-08 1.8E-12 76.0 7.2 63 60-126 7-74 (540)
141 3h1t_A Type I site-specific re 98.6 1.8E-08 6.1E-13 79.1 3.6 68 60-127 178-260 (590)
142 3o8b_A HCV NS3 protease/helica 98.6 3.9E-08 1.3E-12 78.4 4.8 62 62-127 219-281 (666)
143 3h1t_A Type I site-specific re 98.5 3.4E-08 1.2E-12 77.5 3.3 52 5-56 199-259 (590)
144 1nkt_A Preprotein translocase 98.5 9.1E-08 3.1E-12 77.9 5.0 57 2-61 124-180 (922)
145 2ipc_A Preprotein translocase 98.4 1.6E-07 5.4E-12 76.7 4.4 59 2-63 92-150 (997)
146 1z63_A Helicase of the SNF2/RA 98.4 7.5E-07 2.6E-11 68.4 7.4 69 60-130 37-112 (500)
147 3dmq_A RNA polymerase-associat 98.4 6.1E-07 2.1E-11 74.4 7.2 66 61-127 154-223 (968)
148 3rc3_A ATP-dependent RNA helic 98.4 5.3E-07 1.8E-11 72.1 6.0 48 75-127 156-203 (677)
149 2xau_A PRE-mRNA-splicing facto 98.4 1.7E-06 5.6E-11 70.3 8.7 80 47-127 81-164 (773)
150 2w00_A HSDR, R.ECOR124I; ATP-b 98.3 5E-07 1.7E-11 75.3 5.7 68 60-128 271-355 (1038)
151 2w00_A HSDR, R.ECOR124I; ATP-b 98.3 6.2E-07 2.1E-11 74.7 5.6 52 4-56 300-353 (1038)
152 3jux_A Protein translocase sub 98.2 1.2E-05 4E-10 64.8 10.8 74 61-136 76-149 (822)
153 2xau_A PRE-mRNA-splicing facto 98.2 3.4E-06 1.2E-10 68.5 7.0 53 3-55 108-162 (773)
154 1z63_A Helicase of the SNF2/RA 98.1 4.8E-06 1.6E-10 63.9 6.4 54 3-57 55-109 (500)
155 3dmq_A RNA polymerase-associat 98.0 9.2E-06 3.2E-10 67.4 6.9 52 4-56 170-222 (968)
156 3mwy_W Chromo domain-containin 97.9 2.9E-05 9.9E-10 63.2 7.5 69 61-130 237-312 (800)
157 1z3i_X Similar to RAD54-like; 97.8 6.4E-05 2.2E-09 59.8 7.9 69 60-129 55-139 (644)
158 3jux_A Protein translocase sub 97.6 0.0001 3.6E-09 59.4 5.8 54 8-62 92-145 (822)
159 3mwy_W Chromo domain-containin 97.5 0.00015 5E-09 59.1 6.5 54 3-57 254-309 (800)
160 1w36_D RECD, exodeoxyribonucle 97.5 0.00024 8.3E-09 56.2 6.9 70 62-131 151-224 (608)
161 2zts_A Putative uncharacterize 97.5 0.0031 1.1E-07 43.4 11.5 39 3-41 29-67 (251)
162 1z3i_X Similar to RAD54-like; 97.4 0.00046 1.6E-08 54.9 6.9 54 3-57 78-137 (644)
163 1w36_D RECD, exodeoxyribonucle 97.2 0.00049 1.7E-08 54.5 5.8 55 2-56 162-219 (608)
164 2z43_A DNA repair and recombin 97.2 0.0059 2E-07 44.4 10.9 41 3-43 106-151 (324)
165 3bh0_A DNAB-like replicative h 97.2 0.024 8.4E-07 41.0 14.1 129 3-135 67-225 (315)
166 4b3f_X DNA-binding protein smu 97.0 0.0014 4.7E-08 52.1 6.7 50 6-56 207-256 (646)
167 2gk6_A Regulator of nonsense t 96.9 0.0012 4.2E-08 52.3 5.5 52 3-55 194-246 (624)
168 1v5w_A DMC1, meiotic recombina 96.9 0.021 7.1E-07 41.9 11.7 103 3-116 121-232 (343)
169 3lfu_A DNA helicase II; SF1 he 96.9 0.0027 9.1E-08 50.1 6.9 53 4-56 22-77 (647)
170 2q6t_A DNAB replication FORK h 96.9 0.043 1.5E-06 41.6 13.3 130 3-135 199-357 (444)
171 2xzl_A ATP-dependent helicase 96.8 0.0031 1.1E-07 51.5 7.1 53 3-56 374-427 (802)
172 4a1f_A DNAB helicase, replicat 96.8 0.053 1.8E-06 39.9 13.0 129 3-135 45-200 (338)
173 2r6a_A DNAB helicase, replicat 96.8 0.073 2.5E-06 40.5 14.0 38 3-40 202-239 (454)
174 1n0w_A DNA repair protein RAD5 96.8 0.03 1E-06 38.3 10.9 39 3-41 23-66 (243)
175 2i1q_A DNA repair and recombin 96.7 0.016 5.6E-07 41.8 9.9 42 3-44 97-153 (322)
176 3bgw_A DNAB-like replicative h 96.7 0.072 2.5E-06 40.5 13.7 129 3-135 196-354 (444)
177 3ec2_A DNA replication protein 96.7 0.0026 9E-08 42.0 5.2 37 3-39 37-73 (180)
178 2cvh_A DNA repair and recombin 96.7 0.023 7.9E-07 38.2 10.1 35 3-41 19-53 (220)
179 3lfu_A DNA helicase II; SF1 he 96.6 0.0086 3E-07 47.2 8.2 68 60-128 9-79 (647)
180 1q57_A DNA primase/helicase; d 96.6 0.11 3.8E-06 39.9 14.3 131 2-135 240-398 (503)
181 4b3f_X DNA-binding protein smu 96.6 0.0079 2.7E-07 47.8 7.9 65 61-126 190-256 (646)
182 3io5_A Recombination and repai 96.6 0.044 1.5E-06 40.2 11.1 89 6-116 30-124 (333)
183 2gk6_A Regulator of nonsense t 96.6 0.0059 2E-07 48.4 6.9 65 61-126 181-247 (624)
184 2xzl_A ATP-dependent helicase 96.6 0.0067 2.3E-07 49.5 7.4 65 61-126 361-427 (802)
185 2qgz_A Helicase loader, putati 96.5 0.0038 1.3E-07 45.3 5.1 36 4-40 152-188 (308)
186 3lda_A DNA repair protein RAD5 96.5 0.046 1.6E-06 41.1 11.0 39 3-41 177-220 (400)
187 2wjy_A Regulator of nonsense t 96.4 0.0045 1.5E-07 50.6 5.6 52 3-55 370-422 (800)
188 2dr3_A UPF0273 protein PH0284; 96.3 0.0063 2.2E-07 41.8 5.1 38 3-41 22-59 (247)
189 2w58_A DNAI, primosome compone 96.3 0.0063 2.1E-07 40.8 4.9 34 5-39 55-88 (202)
190 3kl4_A SRP54, signal recogniti 96.3 0.17 5.7E-06 38.5 13.0 36 4-40 97-132 (433)
191 1uaa_A REP helicase, protein ( 96.2 0.01 3.5E-07 47.3 6.3 53 4-56 15-70 (673)
192 1tf7_A KAIC; homohexamer, hexa 96.1 0.086 2.9E-06 40.8 11.2 39 3-42 280-318 (525)
193 3e1s_A Exodeoxyribonuclease V, 96.1 0.011 3.9E-07 46.4 6.2 47 3-50 203-249 (574)
194 2wjy_A Regulator of nonsense t 96.1 0.015 5.1E-07 47.5 7.0 65 61-126 357-423 (800)
195 3u4q_A ATP-dependent helicase/ 96.1 0.01 3.6E-07 50.5 6.2 54 3-56 22-80 (1232)
196 4a74_A DNA repair and recombin 96.1 0.11 3.7E-06 35.1 10.4 39 3-41 24-67 (231)
197 1pjr_A PCRA; DNA repair, DNA r 96.0 0.017 5.9E-07 46.5 6.9 53 4-56 24-79 (724)
198 2o0j_A Terminase, DNA packagin 96.0 0.038 1.3E-06 41.4 8.2 70 61-130 164-235 (385)
199 3upu_A ATP-dependent DNA helic 96.0 0.02 6.9E-07 43.5 6.9 44 6-50 47-91 (459)
200 1nlf_A Regulatory protein REPA 96.0 0.096 3.3E-06 36.9 10.1 24 3-26 29-52 (279)
201 1e9r_A Conjugal transfer prote 95.9 0.012 4.1E-07 44.3 5.4 42 4-46 53-94 (437)
202 3bos_A Putative DNA replicatio 95.9 0.013 4.3E-07 39.9 5.1 37 3-40 51-87 (242)
203 3cpe_A Terminase, DNA packagin 95.9 0.036 1.2E-06 43.6 8.2 70 61-130 164-235 (592)
204 3cmw_A Protein RECA, recombina 95.9 0.026 9E-07 49.5 7.9 93 3-117 1430-1523(1706)
205 3dm5_A SRP54, signal recogniti 95.8 0.41 1.4E-05 36.5 13.5 39 5-44 101-141 (443)
206 3n70_A Transport activator; si 95.8 0.0069 2.4E-07 38.7 3.3 23 3-25 23-45 (145)
207 1uaa_A REP helicase, protein ( 95.8 0.025 8.5E-07 45.0 7.1 74 62-136 4-83 (673)
208 1l8q_A Chromosomal replication 95.8 0.028 9.4E-07 40.5 6.7 36 4-40 37-72 (324)
209 3e1s_A Exodeoxyribonuclease V, 95.8 0.03 1E-06 44.0 7.3 59 62-121 191-250 (574)
210 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.017 5.8E-07 39.1 5.2 37 3-40 22-58 (235)
211 2kjq_A DNAA-related protein; s 95.7 0.014 4.6E-07 37.7 4.4 37 3-40 35-71 (149)
212 3co5_A Putative two-component 95.7 0.0056 1.9E-07 39.1 2.4 20 3-22 26-45 (143)
213 3cmu_A Protein RECA, recombina 95.6 0.1 3.6E-06 46.6 10.6 92 3-116 1426-1518(2050)
214 2b8t_A Thymidine kinase; deoxy 95.6 0.017 5.9E-07 40.0 4.7 40 3-43 11-50 (223)
215 1pjr_A PCRA; DNA repair, DNA r 95.6 0.087 3E-06 42.4 9.4 76 60-136 11-91 (724)
216 1cr0_A DNA primase/helicase; R 95.5 0.022 7.4E-07 40.6 5.2 39 2-40 33-71 (296)
217 2ehv_A Hypothetical protein PH 95.5 0.021 7.3E-07 39.2 5.0 38 3-40 29-66 (251)
218 2orw_A Thymidine kinase; TMTK, 95.4 0.028 9.7E-07 37.5 5.3 40 3-43 2-41 (184)
219 4ag6_A VIRB4 ATPase, type IV s 95.4 0.024 8.4E-07 42.1 5.1 39 3-42 34-72 (392)
220 3u4q_A ATP-dependent helicase/ 95.3 0.045 1.6E-06 46.7 7.0 65 62-127 12-81 (1232)
221 2px0_A Flagellar biosynthesis 95.2 0.032 1.1E-06 40.2 5.3 38 3-40 104-141 (296)
222 1c4o_A DNA nucleotide excision 95.2 0.044 1.5E-06 43.8 6.5 48 6-57 30-77 (664)
223 1c4o_A DNA nucleotide excision 95.2 0.08 2.7E-06 42.3 8.0 50 76-129 30-79 (664)
224 2eyu_A Twitching motility prot 95.1 0.039 1.3E-06 39.0 5.4 21 3-23 24-44 (261)
225 1jbk_A CLPB protein; beta barr 95.1 0.02 6.7E-07 37.3 3.6 23 4-26 43-65 (195)
226 2p65_A Hypothetical protein PF 95.0 0.017 5.7E-07 37.6 3.1 24 4-27 43-66 (187)
227 3hr8_A Protein RECA; alpha and 95.0 0.038 1.3E-06 41.0 5.2 42 3-45 60-101 (356)
228 2zr9_A Protein RECA, recombina 95.0 0.037 1.3E-06 40.8 5.1 38 3-41 60-97 (349)
229 1xx6_A Thymidine kinase; NESG, 95.0 0.036 1.2E-06 37.4 4.7 40 3-43 7-46 (191)
230 1p9r_A General secretion pathw 94.9 0.031 1.1E-06 42.3 4.6 36 3-39 166-201 (418)
231 1u94_A RECA protein, recombina 94.9 0.042 1.4E-06 40.7 5.2 39 3-42 62-100 (356)
232 2ewv_A Twitching motility prot 94.9 0.053 1.8E-06 40.3 5.7 36 3-39 135-171 (372)
233 1kgd_A CASK, peripheral plasma 94.9 0.023 7.7E-07 37.6 3.4 23 2-24 3-25 (180)
234 3a8t_A Adenylate isopentenyltr 94.8 0.019 6.4E-07 42.4 3.1 23 4-26 40-62 (339)
235 2oap_1 GSPE-2, type II secreti 94.8 0.023 7.8E-07 44.1 3.6 19 3-21 259-277 (511)
236 3bs4_A Uncharacterized protein 94.8 0.044 1.5E-06 38.9 4.8 53 2-56 19-71 (260)
237 3syl_A Protein CBBX; photosynt 94.7 0.024 8.3E-07 40.3 3.5 22 5-26 68-89 (309)
238 3jvv_A Twitching mobility prot 94.7 0.058 2E-06 39.9 5.5 36 3-39 122-158 (356)
239 3upu_A ATP-dependent DNA helic 94.6 0.055 1.9E-06 41.1 5.4 61 61-122 26-93 (459)
240 1xp8_A RECA protein, recombina 94.6 0.052 1.8E-06 40.3 5.1 39 3-42 73-111 (366)
241 3te6_A Regulatory protein SIR3 94.5 0.025 8.5E-07 41.3 3.1 25 3-27 44-68 (318)
242 3vaa_A Shikimate kinase, SK; s 94.5 0.029 1E-06 37.6 3.3 24 3-26 24-47 (199)
243 3uk6_A RUVB-like 2; hexameric 94.4 0.03 1E-06 40.8 3.5 24 4-27 70-93 (368)
244 1d2n_A N-ethylmaleimide-sensit 94.4 0.028 9.7E-07 39.4 3.2 23 5-27 65-87 (272)
245 2z4s_A Chromosomal replication 94.4 0.092 3.1E-06 39.8 6.2 37 4-41 130-168 (440)
246 3cf0_A Transitional endoplasmi 94.4 0.032 1.1E-06 40.0 3.5 24 3-26 48-71 (301)
247 2qor_A Guanylate kinase; phosp 94.4 0.037 1.3E-06 37.2 3.5 24 2-25 10-33 (204)
248 3tau_A Guanylate kinase, GMP k 94.3 0.033 1.1E-06 37.7 3.3 22 3-24 7-28 (208)
249 3h4m_A Proteasome-activating n 94.3 0.042 1.4E-06 38.7 3.9 24 3-26 50-73 (285)
250 2qmh_A HPR kinase/phosphorylas 94.3 0.028 9.5E-07 38.5 2.8 24 3-26 33-56 (205)
251 3hws_A ATP-dependent CLP prote 94.3 0.035 1.2E-06 40.8 3.5 24 3-26 50-73 (363)
252 3b9p_A CG5977-PA, isoform A; A 94.3 0.031 1.1E-06 39.6 3.1 23 4-26 54-76 (297)
253 2bjv_A PSP operon transcriptio 94.3 0.034 1.2E-06 38.8 3.3 23 3-25 28-50 (265)
254 1zp6_A Hypothetical protein AT 94.2 0.037 1.3E-06 36.5 3.3 23 2-24 7-29 (191)
255 1ofh_A ATP-dependent HSL prote 94.2 0.04 1.4E-06 39.0 3.6 23 4-26 50-72 (310)
256 3tr0_A Guanylate kinase, GMP k 94.2 0.039 1.3E-06 36.7 3.4 22 3-24 6-27 (205)
257 3trf_A Shikimate kinase, SK; a 94.2 0.036 1.2E-06 36.4 3.1 23 4-26 5-27 (185)
258 2qz4_A Paraplegin; AAA+, SPG7, 94.1 0.04 1.4E-06 38.1 3.5 23 4-26 39-61 (262)
259 1kag_A SKI, shikimate kinase I 94.1 0.04 1.4E-06 35.7 3.3 22 3-24 3-24 (173)
260 1lvg_A Guanylate kinase, GMP k 94.1 0.035 1.2E-06 37.3 3.0 23 2-24 2-24 (198)
261 2gza_A Type IV secretion syste 94.1 0.036 1.2E-06 40.9 3.2 20 3-22 174-193 (361)
262 3exa_A TRNA delta(2)-isopenten 94.0 0.036 1.2E-06 40.5 3.1 22 4-25 3-24 (322)
263 1c9k_A COBU, adenosylcobinamid 94.0 0.024 8.3E-07 38.0 2.0 45 7-56 2-46 (180)
264 2xxa_A Signal recognition part 94.0 1.3 4.5E-05 33.5 11.8 43 5-48 101-146 (433)
265 3iij_A Coilin-interacting nucl 94.0 0.049 1.7E-06 35.6 3.5 23 3-25 10-32 (180)
266 3foz_A TRNA delta(2)-isopenten 94.0 0.035 1.2E-06 40.5 2.9 20 7-26 13-32 (316)
267 3cm0_A Adenylate kinase; ATP-b 93.9 0.037 1.3E-06 36.3 2.7 25 1-25 1-25 (186)
268 2qby_B CDC6 homolog 3, cell di 93.8 0.19 6.6E-06 36.6 6.8 23 4-26 45-67 (384)
269 2j41_A Guanylate kinase; GMP, 93.8 0.052 1.8E-06 36.2 3.4 23 2-24 4-26 (207)
270 1w36_B RECB, exodeoxyribonucle 93.8 0.15 5.1E-06 43.3 6.8 53 3-56 16-79 (1180)
271 3eie_A Vacuolar protein sortin 93.7 0.052 1.8E-06 39.2 3.5 22 5-26 52-73 (322)
272 2chg_A Replication factor C sm 93.7 0.061 2.1E-06 35.7 3.6 22 5-26 39-60 (226)
273 2ze6_A Isopentenyl transferase 93.7 0.043 1.5E-06 38.4 2.9 21 6-26 3-23 (253)
274 1um8_A ATP-dependent CLP prote 93.7 0.045 1.5E-06 40.3 3.2 23 4-26 72-94 (376)
275 1xwi_A SKD1 protein; VPS4B, AA 93.7 0.054 1.8E-06 39.3 3.5 22 5-26 46-67 (322)
276 1y63_A LMAJ004144AAA protein; 93.6 0.056 1.9E-06 35.7 3.3 24 3-26 9-32 (184)
277 3t15_A Ribulose bisphosphate c 93.6 0.054 1.9E-06 38.7 3.4 23 5-27 37-59 (293)
278 2c9o_A RUVB-like 1; hexameric 93.6 0.055 1.9E-06 41.1 3.5 24 4-27 63-86 (456)
279 1lv7_A FTSH; alpha/beta domain 93.5 0.052 1.8E-06 37.7 3.0 22 5-26 46-67 (257)
280 3ney_A 55 kDa erythrocyte memb 93.5 0.064 2.2E-06 36.4 3.4 23 2-24 17-39 (197)
281 1qhx_A CPT, protein (chloramph 93.4 0.066 2.3E-06 34.8 3.4 22 4-25 3-24 (178)
282 2qp9_X Vacuolar protein sortin 93.4 0.065 2.2E-06 39.4 3.5 22 5-26 85-106 (355)
283 1vma_A Cell division protein F 93.3 0.12 4.2E-06 37.3 4.9 36 4-40 104-139 (306)
284 4gp7_A Metallophosphoesterase; 93.3 0.046 1.6E-06 35.8 2.4 21 3-23 8-28 (171)
285 1ls1_A Signal recognition part 93.3 1.5 5.2E-05 31.2 14.6 36 4-40 98-133 (295)
286 1tf7_A KAIC; homohexamer, hexa 93.3 0.12 3.9E-06 40.1 5.0 38 3-40 38-75 (525)
287 3cmu_A Protein RECA, recombina 93.3 0.1 3.6E-06 46.6 5.1 46 3-50 1080-1125(2050)
288 2v1u_A Cell division control p 93.3 0.06 2E-06 39.2 3.2 23 4-26 44-66 (387)
289 1rj9_A FTSY, signal recognitio 93.3 0.14 4.8E-06 36.9 5.1 36 3-39 101-136 (304)
290 2vhj_A Ntpase P4, P4; non- hyd 93.3 0.028 9.7E-07 41.2 1.4 34 3-40 122-155 (331)
291 3pfi_A Holliday junction ATP-d 93.2 0.067 2.3E-06 38.6 3.4 22 5-26 56-77 (338)
292 1ojl_A Transcriptional regulat 93.2 0.065 2.2E-06 38.6 3.3 23 3-25 24-46 (304)
293 3d8b_A Fidgetin-like protein 1 93.2 0.071 2.4E-06 39.2 3.5 23 4-26 117-139 (357)
294 2r44_A Uncharacterized protein 93.1 0.052 1.8E-06 39.1 2.6 23 3-25 45-67 (331)
295 3vfd_A Spastin; ATPase, microt 93.1 0.075 2.5E-06 39.4 3.5 23 4-26 148-170 (389)
296 3crm_A TRNA delta(2)-isopenten 93.1 0.071 2.4E-06 39.0 3.3 21 6-26 7-27 (323)
297 2yvu_A Probable adenylyl-sulfa 93.1 0.17 5.6E-06 33.3 4.9 36 3-39 12-47 (186)
298 2pt7_A CAG-ALFA; ATPase, prote 93.0 0.05 1.7E-06 39.7 2.5 19 3-21 170-188 (330)
299 2v54_A DTMP kinase, thymidylat 93.0 0.087 3E-06 35.0 3.5 25 1-25 1-25 (204)
300 1z6g_A Guanylate kinase; struc 93.0 0.077 2.6E-06 36.2 3.3 22 3-24 22-43 (218)
301 1zu4_A FTSY; GTPase, signal re 93.0 0.15 5E-06 37.1 4.9 35 4-39 105-139 (320)
302 3lw7_A Adenylate kinase relate 93.0 0.05 1.7E-06 34.9 2.2 19 6-24 3-21 (179)
303 1hqc_A RUVB; extended AAA-ATPa 93.0 0.062 2.1E-06 38.4 2.9 22 5-26 39-60 (324)
304 4fcw_A Chaperone protein CLPB; 93.0 0.061 2.1E-06 38.2 2.8 22 5-26 48-69 (311)
305 2v9p_A Replication protein E1; 92.9 0.12 4E-06 37.5 4.3 33 2-38 124-156 (305)
306 1knq_A Gluconate kinase; ALFA/ 92.9 0.078 2.7E-06 34.4 3.1 22 3-24 7-28 (175)
307 1s96_A Guanylate kinase, GMP k 92.9 0.081 2.8E-06 36.3 3.3 22 2-23 14-35 (219)
308 2r8r_A Sensor protein; KDPD, P 92.9 0.16 5.6E-06 35.3 4.8 33 6-39 8-40 (228)
309 3b9q_A Chloroplast SRP recepto 92.9 0.16 5.5E-06 36.6 4.9 37 3-40 99-135 (302)
310 3d3q_A TRNA delta(2)-isopenten 92.9 0.077 2.6E-06 39.1 3.3 21 6-26 9-29 (340)
311 2d7d_A Uvrabc system protein B 92.9 0.47 1.6E-05 37.9 8.0 50 76-129 34-83 (661)
312 3cmw_A Protein RECA, recombina 92.9 0.15 5.2E-06 44.9 5.5 40 3-43 33-72 (1706)
313 2qby_A CDC6 homolog 1, cell di 92.8 0.21 7E-06 36.2 5.5 36 4-40 45-83 (386)
314 1e9r_A Conjugal transfer prote 92.8 0.19 6.7E-06 37.6 5.5 42 75-117 54-95 (437)
315 4b4t_M 26S protease regulatory 92.7 0.083 2.8E-06 40.2 3.4 23 5-27 216-238 (434)
316 4eun_A Thermoresistant glucoki 92.7 0.092 3.1E-06 35.1 3.3 23 3-25 28-50 (200)
317 3a00_A Guanylate kinase, GMP k 92.6 0.092 3.1E-06 34.7 3.1 20 5-24 2-21 (186)
318 2r62_A Cell division protease 92.6 0.038 1.3E-06 38.5 1.3 22 5-26 45-66 (268)
319 3uie_A Adenylyl-sulfate kinase 92.6 0.089 3E-06 35.2 3.1 24 3-26 24-47 (200)
320 1g8p_A Magnesium-chelatase 38 92.6 0.051 1.8E-06 39.2 2.0 23 4-26 45-67 (350)
321 3eph_A TRNA isopentenyltransfe 92.5 0.089 3E-06 39.7 3.2 21 6-26 4-24 (409)
322 2r2a_A Uncharacterized protein 92.5 0.08 2.7E-06 35.9 2.7 22 6-27 7-28 (199)
323 1znw_A Guanylate kinase, GMP k 92.5 0.1 3.4E-06 35.1 3.3 22 2-23 18-39 (207)
324 1kht_A Adenylate kinase; phosp 92.5 0.099 3.4E-06 34.2 3.1 24 3-26 2-25 (192)
325 1ex7_A Guanylate kinase; subst 92.4 0.11 3.7E-06 34.9 3.3 18 6-23 3-20 (186)
326 3pvs_A Replication-associated 92.4 0.086 2.9E-06 40.1 3.0 22 5-26 51-72 (447)
327 4b4t_J 26S protease regulatory 92.3 0.1 3.5E-06 39.3 3.4 23 5-27 183-205 (405)
328 1w4r_A Thymidine kinase; type 92.3 0.22 7.6E-06 33.7 4.7 38 4-42 20-57 (195)
329 1ixz_A ATP-dependent metallopr 92.2 0.098 3.4E-06 36.2 3.0 20 6-25 51-70 (254)
330 1fnn_A CDC6P, cell division co 92.2 0.23 7.9E-06 36.1 5.1 34 6-40 46-80 (389)
331 1njg_A DNA polymerase III subu 92.2 0.13 4.4E-06 34.5 3.5 21 6-26 47-67 (250)
332 3kb2_A SPBC2 prophage-derived 92.1 0.11 3.8E-06 33.4 3.0 20 6-25 3-22 (173)
333 2zan_A Vacuolar protein sortin 92.1 0.11 3.7E-06 39.4 3.4 22 5-26 168-189 (444)
334 1tue_A Replication protein E1; 92.1 0.092 3.1E-06 36.1 2.7 19 5-23 59-77 (212)
335 2d7d_A Uvrabc system protein B 92.1 0.4 1.4E-05 38.3 6.7 48 6-57 34-81 (661)
336 2plr_A DTMP kinase, probable t 92.1 0.12 3.9E-06 34.5 3.2 25 2-26 2-26 (213)
337 3vkw_A Replicase large subunit 92.1 0.094 3.2E-06 40.0 2.9 42 7-54 164-205 (446)
338 4b4t_L 26S protease subunit RP 92.1 0.11 3.8E-06 39.5 3.4 23 5-27 216-238 (437)
339 3nbx_X ATPase RAVA; AAA+ ATPas 92.0 0.078 2.7E-06 41.0 2.4 22 3-24 40-61 (500)
340 2rhm_A Putative kinase; P-loop 92.0 0.13 4.5E-06 33.7 3.3 23 3-25 4-26 (193)
341 2c95_A Adenylate kinase 1; tra 91.9 0.11 3.6E-06 34.3 2.8 24 3-26 8-31 (196)
342 2og2_A Putative signal recogni 91.9 0.25 8.5E-06 36.6 5.0 37 3-40 156-192 (359)
343 3c8u_A Fructokinase; YP_612366 91.9 0.12 4E-06 34.8 3.0 21 3-23 21-41 (208)
344 4b4t_K 26S protease regulatory 91.9 0.12 4.2E-06 39.2 3.3 23 5-27 207-229 (428)
345 3nwj_A ATSK2; P loop, shikimat 91.8 0.11 3.9E-06 36.4 2.9 24 3-26 47-70 (250)
346 3asz_A Uridine kinase; cytidin 91.8 0.13 4.3E-06 34.5 3.0 22 3-24 5-26 (211)
347 1in4_A RUVB, holliday junction 91.8 0.12 3.9E-06 37.6 3.0 22 5-26 52-73 (334)
348 1cke_A CK, MSSA, protein (cyti 91.7 0.15 5E-06 34.5 3.4 22 4-25 5-26 (227)
349 2bdt_A BH3686; alpha-beta prot 91.7 0.11 3.7E-06 34.3 2.6 22 4-25 2-23 (189)
350 3lnc_A Guanylate kinase, GMP k 91.7 0.084 2.9E-06 36.1 2.1 23 3-25 26-48 (231)
351 1sxj_D Activator 1 41 kDa subu 91.6 0.15 5.1E-06 36.7 3.5 22 5-26 59-80 (353)
352 3pxg_A Negative regulator of g 91.6 0.14 4.9E-06 39.0 3.5 24 4-27 201-224 (468)
353 1pzn_A RAD51, DNA repair and r 91.6 0.24 8.1E-06 36.4 4.5 39 3-41 130-173 (349)
354 1gvn_B Zeta; postsegregational 91.4 0.098 3.3E-06 37.4 2.3 21 4-24 33-53 (287)
355 1xjc_A MOBB protein homolog; s 91.4 0.34 1.2E-05 32.0 4.8 33 6-39 6-38 (169)
356 2qt1_A Nicotinamide riboside k 91.3 0.16 5.6E-06 33.9 3.3 21 4-24 21-41 (207)
357 2j9r_A Thymidine kinase; TK1, 91.3 0.37 1.3E-05 33.1 5.0 40 4-44 28-67 (214)
358 1g5t_A COB(I)alamin adenosyltr 91.3 0.41 1.4E-05 32.4 5.2 38 5-43 29-66 (196)
359 2zts_A Putative uncharacterize 91.3 0.25 8.4E-06 33.7 4.2 52 72-124 27-79 (251)
360 1ly1_A Polynucleotide kinase; 91.2 0.15 5.1E-06 33.0 2.9 19 6-24 4-22 (181)
361 1rz3_A Hypothetical protein rb 91.2 0.37 1.2E-05 32.2 4.9 35 4-39 22-56 (201)
362 1g41_A Heat shock protein HSLU 91.2 0.16 5.5E-06 38.7 3.4 23 4-26 50-72 (444)
363 2wwf_A Thymidilate kinase, put 91.1 0.19 6.7E-06 33.4 3.5 24 3-26 9-32 (212)
364 3hu3_A Transitional endoplasmi 91.1 0.17 5.8E-06 39.0 3.5 21 5-25 239-259 (489)
365 4b4t_H 26S protease regulatory 91.1 0.14 4.7E-06 39.3 2.9 23 5-27 244-266 (467)
366 1f2t_A RAD50 ABC-ATPase; DNA d 91.1 0.18 6.1E-06 32.3 3.1 18 6-23 25-42 (149)
367 1iy2_A ATP-dependent metallopr 91.1 0.15 5.2E-06 35.8 3.0 20 6-25 75-94 (278)
368 3pxi_A Negative regulator of g 91.0 0.26 8.9E-06 39.8 4.6 22 6-27 523-544 (758)
369 1u0j_A DNA replication protein 91.0 0.18 6.1E-06 35.9 3.2 21 6-26 106-126 (267)
370 3m6a_A ATP-dependent protease 90.9 0.16 5.6E-06 39.5 3.3 24 3-26 107-130 (543)
371 3e70_C DPA, signal recognition 90.9 3.5 0.00012 30.0 14.7 36 3-39 128-163 (328)
372 2ffh_A Protein (FFH); SRP54, s 90.8 4.2 0.00014 30.7 14.0 36 4-40 98-133 (425)
373 2v3c_C SRP54, signal recogniti 90.8 0.22 7.4E-06 37.8 3.8 35 5-40 100-134 (432)
374 1sxj_A Activator 1 95 kDa subu 90.8 0.18 6.1E-06 38.9 3.4 32 5-40 78-109 (516)
375 1j8m_F SRP54, signal recogniti 90.7 0.31 1E-05 35.0 4.4 36 4-40 98-133 (297)
376 3pxi_A Negative regulator of g 90.7 0.18 6.3E-06 40.7 3.5 24 3-26 200-223 (758)
377 2pez_A Bifunctional 3'-phospho 90.7 0.19 6.6E-06 32.7 3.1 24 3-26 4-27 (179)
378 3of5_A Dethiobiotin synthetase 90.7 0.41 1.4E-05 33.0 4.8 34 7-41 7-41 (228)
379 4b4t_I 26S protease regulatory 90.7 0.19 6.5E-06 38.2 3.3 23 5-27 217-239 (437)
380 1tev_A UMP-CMP kinase; ploop, 90.7 0.18 6.2E-06 32.9 3.0 23 3-25 2-24 (196)
381 3t61_A Gluconokinase; PSI-biol 90.7 0.18 6.1E-06 33.6 2.9 21 5-25 19-39 (202)
382 3fb4_A Adenylate kinase; psych 90.6 0.23 7.8E-06 33.3 3.4 21 6-26 2-22 (216)
383 1nn5_A Similar to deoxythymidy 90.6 0.22 7.5E-06 33.2 3.3 24 3-26 8-31 (215)
384 4e22_A Cytidylate kinase; P-lo 90.6 0.21 7E-06 34.8 3.3 23 3-25 26-48 (252)
385 1zd8_A GTP:AMP phosphotransfer 90.5 0.2 6.8E-06 34.1 3.1 22 4-25 7-28 (227)
386 3kta_A Chromosome segregation 90.5 0.25 8.7E-06 32.1 3.5 19 6-24 28-46 (182)
387 3qf7_A RAD50; ABC-ATPase, ATPa 90.5 0.18 6.3E-06 37.2 3.1 18 6-23 25-42 (365)
388 1via_A Shikimate kinase; struc 90.4 0.21 7.1E-06 32.4 3.0 21 6-26 6-26 (175)
389 3dl0_A Adenylate kinase; phosp 90.4 0.2 6.7E-06 33.7 2.9 20 6-25 2-21 (216)
390 3auy_A DNA double-strand break 90.2 0.2 6.8E-06 37.0 3.1 19 6-24 27-45 (371)
391 2iyv_A Shikimate kinase, SK; t 90.2 0.24 8.1E-06 32.4 3.1 22 5-26 3-24 (184)
392 2yhs_A FTSY, cell division pro 90.1 0.42 1.5E-05 37.0 4.9 36 3-39 292-327 (503)
393 2x8a_A Nuclear valosin-contain 90.1 0.21 7.2E-06 35.3 3.0 20 6-25 46-65 (274)
394 2bwj_A Adenylate kinase 5; pho 90.1 0.24 8.1E-06 32.6 3.1 23 4-26 12-34 (199)
395 2cdn_A Adenylate kinase; phosp 89.8 0.27 9.2E-06 32.6 3.3 23 4-26 20-42 (201)
396 3tif_A Uncharacterized ABC tra 89.7 0.2 6.7E-06 34.7 2.6 19 3-21 30-48 (235)
397 1byi_A Dethiobiotin synthase; 89.7 0.59 2E-05 31.4 5.0 33 8-41 6-38 (224)
398 1aky_A Adenylate kinase; ATP:A 89.7 0.27 9.3E-06 33.2 3.2 24 3-26 3-26 (220)
399 2w58_A DNAI, primosome compone 89.7 0.47 1.6E-05 31.4 4.4 42 75-118 55-96 (202)
400 1e6c_A Shikimate kinase; phosp 89.7 0.26 8.9E-06 31.7 3.0 22 5-26 3-24 (173)
401 1zak_A Adenylate kinase; ATP:A 89.6 0.28 9.6E-06 33.1 3.3 23 4-26 5-27 (222)
402 3k1j_A LON protease, ATP-depen 89.6 0.24 8.3E-06 39.0 3.3 24 3-26 59-82 (604)
403 1ypw_A Transitional endoplasmi 89.5 0.22 7.7E-06 40.6 3.1 22 3-24 237-258 (806)
404 1zuh_A Shikimate kinase; alpha 89.4 0.27 9.1E-06 31.6 2.9 22 5-26 8-29 (168)
405 1m7g_A Adenylylsulfate kinase; 89.4 0.71 2.4E-05 30.9 5.2 36 3-39 24-60 (211)
406 3bh0_A DNAB-like replicative h 89.4 1.3 4.3E-05 31.9 6.7 83 40-124 28-116 (315)
407 2ce7_A Cell division protein F 89.3 0.25 8.4E-06 38.0 3.0 22 5-26 50-71 (476)
408 2chq_A Replication factor C sm 89.3 0.34 1.2E-05 34.2 3.6 21 6-26 40-60 (319)
409 1iqp_A RFCS; clamp loader, ext 89.2 0.34 1.2E-05 34.3 3.6 21 6-26 48-68 (327)
410 2ius_A DNA translocase FTSK; n 89.2 0.56 1.9E-05 36.4 4.9 25 3-27 166-190 (512)
411 1r6b_X CLPA protein; AAA+, N-t 89.2 0.31 1E-05 39.3 3.6 24 3-26 206-229 (758)
412 3tqf_A HPR(Ser) kinase; transf 89.2 0.28 9.6E-06 32.8 2.9 24 3-26 15-38 (181)
413 3ec2_A DNA replication protein 89.2 0.41 1.4E-05 31.1 3.7 44 75-120 39-83 (180)
414 2if2_A Dephospho-COA kinase; a 89.1 0.29 9.9E-06 32.5 3.0 19 6-24 3-21 (204)
415 3a4m_A L-seryl-tRNA(SEC) kinas 89.1 0.29 9.8E-06 34.2 3.1 36 3-39 3-38 (260)
416 1nks_A Adenylate kinase; therm 89.0 0.29 9.9E-06 31.9 2.9 36 6-43 3-38 (194)
417 1ak2_A Adenylate kinase isoenz 89.0 0.32 1.1E-05 33.2 3.2 23 4-26 16-38 (233)
418 1qf9_A UMP/CMP kinase, protein 89.0 0.29 9.9E-06 31.9 2.9 20 6-25 8-27 (194)
419 1uf9_A TT1252 protein; P-loop, 89.0 0.31 1.1E-05 32.1 3.0 19 6-24 10-28 (203)
420 1htw_A HI0065; nucleotide-bind 88.9 0.38 1.3E-05 31.2 3.4 21 3-23 32-52 (158)
421 1sxj_C Activator 1 40 kDa subu 88.9 0.28 9.5E-06 35.5 2.9 20 7-26 49-68 (340)
422 2cbz_A Multidrug resistance-as 88.8 0.22 7.6E-06 34.5 2.3 20 3-22 30-49 (237)
423 1vht_A Dephospho-COA kinase; s 88.8 0.34 1.2E-05 32.6 3.2 21 4-24 4-24 (218)
424 2pt5_A Shikimate kinase, SK; a 88.7 0.34 1.1E-05 31.0 3.0 21 6-26 2-22 (168)
425 2bbw_A Adenylate kinase 4, AK4 88.7 0.35 1.2E-05 33.3 3.2 22 4-25 27-48 (246)
426 3tlx_A Adenylate kinase 2; str 88.6 0.33 1.1E-05 33.6 3.1 22 4-25 29-50 (243)
427 1jr3_A DNA polymerase III subu 88.6 0.32 1.1E-05 35.3 3.1 21 6-26 40-60 (373)
428 1r6b_X CLPA protein; AAA+, N-t 88.6 0.27 9.2E-06 39.6 2.9 21 6-26 490-510 (758)
429 3u4q_B ATP-dependent helicase/ 88.5 0.6 2.1E-05 39.6 5.1 36 8-43 5-42 (1166)
430 3bgw_A DNAB-like replicative h 88.4 0.81 2.8E-05 34.7 5.3 41 71-112 193-234 (444)
431 2jeo_A Uridine-cytidine kinase 88.4 0.37 1.3E-05 33.2 3.2 22 3-24 24-45 (245)
432 3f9v_A Minichromosome maintena 88.4 0.27 9.1E-06 38.8 2.7 19 6-24 329-347 (595)
433 1sxj_E Activator 1 40 kDa subu 88.4 0.29 9.8E-06 35.4 2.7 21 6-26 38-58 (354)
434 1ye8_A Protein THEP1, hypothet 88.3 0.36 1.2E-05 31.8 3.0 18 6-23 2-19 (178)
435 2qgz_A Helicase loader, putati 88.3 0.62 2.1E-05 33.5 4.5 34 75-109 153-187 (308)
436 3cpe_A Terminase, DNA packagin 88.2 1.9 6.5E-05 33.8 7.5 53 5-57 179-232 (592)
437 2p5t_B PEZT; postsegregational 88.2 0.27 9.2E-06 34.2 2.4 22 4-25 32-53 (253)
438 3be4_A Adenylate kinase; malar 88.2 0.38 1.3E-05 32.5 3.1 23 4-26 5-27 (217)
439 1ukz_A Uridylate kinase; trans 88.2 0.38 1.3E-05 31.9 3.1 20 5-24 16-35 (203)
440 3gfo_A Cobalt import ATP-bindi 88.1 0.29 9.9E-06 34.8 2.6 20 3-22 33-52 (275)
441 3b85_A Phosphate starvation-in 88.1 0.28 9.4E-06 33.4 2.4 22 3-24 21-42 (208)
442 2i3b_A HCR-ntpase, human cance 88.1 0.41 1.4E-05 32.0 3.2 20 4-23 1-20 (189)
443 1e4v_A Adenylate kinase; trans 88.1 0.35 1.2E-05 32.5 2.9 21 6-26 2-22 (214)
444 2orw_A Thymidine kinase; TMTK, 88.1 0.82 2.8E-05 30.2 4.6 36 77-113 6-41 (184)
445 3qks_A DNA double-strand break 88.0 0.4 1.4E-05 32.3 3.1 18 6-23 25-42 (203)
446 2pcj_A ABC transporter, lipopr 87.9 0.31 1.1E-05 33.4 2.5 20 3-22 29-48 (224)
447 4akg_A Glutathione S-transfera 87.9 0.24 8.4E-06 45.5 2.5 19 3-21 1266-1284(2695)
448 2jaq_A Deoxyguanosine kinase; 87.9 0.4 1.4E-05 31.6 3.0 21 6-26 2-22 (205)
449 3hjh_A Transcription-repair-co 87.9 1.4 4.9E-05 33.9 6.4 49 4-56 14-62 (483)
450 1jjv_A Dephospho-COA kinase; P 87.8 0.39 1.3E-05 32.0 2.9 19 6-24 4-22 (206)
451 2zu0_C Probable ATP-dependent 87.8 0.38 1.3E-05 33.9 3.0 22 2-23 44-65 (267)
452 2vli_A Antibiotic resistance p 87.8 0.29 1E-05 31.7 2.3 22 3-24 4-25 (183)
453 3zq6_A Putative arsenical pump 87.7 0.8 2.7E-05 33.1 4.7 34 6-40 16-49 (324)
454 3qkt_A DNA double-strand break 87.7 0.39 1.3E-05 34.9 3.1 18 6-23 25-42 (339)
455 1sxj_B Activator 1 37 kDa subu 87.7 0.5 1.7E-05 33.4 3.6 22 6-27 44-65 (323)
456 2r6a_A DNAB helicase, replicat 87.6 1.4 4.7E-05 33.4 6.2 40 72-111 200-240 (454)
457 2b8t_A Thymidine kinase; deoxy 87.6 0.74 2.5E-05 31.7 4.3 37 76-113 14-50 (223)
458 1mv5_A LMRA, multidrug resista 87.6 0.3 1E-05 33.9 2.4 21 3-23 27-47 (243)
459 1np6_A Molybdopterin-guanine d 87.6 0.98 3.4E-05 29.7 4.8 30 6-36 8-37 (174)
460 2ghi_A Transport protein; mult 87.5 0.33 1.1E-05 34.1 2.6 21 3-23 45-65 (260)
461 3dm5_A SRP54, signal recogniti 87.5 1.9 6.3E-05 32.9 6.8 55 76-134 102-158 (443)
462 3vkw_A Replicase large subunit 87.5 0.55 1.9E-05 35.8 3.9 45 75-125 162-206 (446)
463 2ff7_A Alpha-hemolysin translo 87.4 0.37 1.3E-05 33.6 2.7 21 3-23 34-54 (247)
464 1ihu_A Arsenical pump-driving 87.4 0.87 3E-05 35.6 5.1 35 5-40 9-43 (589)
465 2o0j_A Terminase, DNA packagin 87.4 2.3 7.9E-05 31.7 7.1 52 5-56 179-231 (385)
466 3nh6_A ATP-binding cassette SU 87.4 0.25 8.7E-06 35.7 1.9 20 3-22 79-98 (306)
467 1g3q_A MIND ATPase, cell divis 87.3 0.78 2.7E-05 31.0 4.3 32 8-40 7-38 (237)
468 2f1r_A Molybdopterin-guanine d 87.3 0.27 9.3E-06 32.4 1.9 20 6-25 4-23 (171)
469 2pbr_A DTMP kinase, thymidylat 87.3 0.44 1.5E-05 31.1 2.9 21 6-26 2-22 (195)
470 1qvr_A CLPB protein; coiled co 87.2 0.88 3E-05 37.3 5.2 24 4-27 191-214 (854)
471 1g6h_A High-affinity branched- 87.2 0.36 1.2E-05 33.8 2.6 20 3-22 32-51 (257)
472 2d2e_A SUFC protein; ABC-ATPas 87.2 0.49 1.7E-05 33.0 3.2 21 3-23 28-48 (250)
473 2pze_A Cystic fibrosis transme 87.2 0.39 1.3E-05 33.0 2.7 20 3-22 33-52 (229)
474 1qvr_A CLPB protein; coiled co 87.2 0.31 1.1E-05 40.0 2.5 22 5-26 589-610 (854)
475 2dhr_A FTSH; AAA+ protein, hex 87.2 0.41 1.4E-05 37.0 3.0 21 5-25 65-85 (499)
476 3aez_A Pantothenate kinase; tr 87.0 0.45 1.5E-05 34.4 3.1 21 3-23 89-109 (312)
477 2dr3_A UPF0273 protein PH0284; 87.0 0.94 3.2E-05 30.6 4.6 47 75-123 24-70 (247)
478 2woo_A ATPase GET3; tail-ancho 87.0 0.93 3.2E-05 32.8 4.7 33 6-39 21-53 (329)
479 1svm_A Large T antigen; AAA+ f 87.0 0.53 1.8E-05 35.0 3.5 23 3-25 168-190 (377)
480 1sgw_A Putative ABC transporte 87.0 0.42 1.4E-05 32.6 2.7 21 3-23 34-54 (214)
481 3bos_A Putative DNA replicatio 87.0 0.88 3E-05 30.5 4.4 25 75-100 53-77 (242)
482 1ji0_A ABC transporter; ATP bi 87.0 0.38 1.3E-05 33.3 2.6 21 3-23 31-51 (240)
483 4g1u_C Hemin import ATP-bindin 86.9 0.41 1.4E-05 33.8 2.7 20 3-22 36-55 (266)
484 1hyq_A MIND, cell division inh 86.9 1 3.4E-05 31.1 4.7 32 8-40 7-38 (263)
485 1odf_A YGR205W, hypothetical 3 86.8 0.49 1.7E-05 33.9 3.1 19 5-23 32-50 (290)
486 2z0h_A DTMP kinase, thymidylat 86.7 0.49 1.7E-05 31.0 2.9 31 7-38 3-33 (197)
487 2j37_W Signal recognition part 86.7 0.88 3E-05 35.2 4.7 36 5-41 102-137 (504)
488 3nwn_A Kinesin-like protein KI 86.7 0.28 9.6E-06 36.3 1.8 19 2-20 101-121 (359)
489 3t0q_A AGR253WP; kinesin, alph 86.6 0.33 1.1E-05 35.8 2.2 20 2-21 82-103 (349)
490 1b0u_A Histidine permease; ABC 86.6 0.4 1.4E-05 33.7 2.5 20 3-22 31-50 (262)
491 2yz2_A Putative ABC transporte 86.5 0.41 1.4E-05 33.7 2.6 21 3-23 32-52 (266)
492 1f9v_A Kinesin-like protein KA 86.4 0.34 1.1E-05 35.7 2.1 20 2-21 81-102 (347)
493 1vpl_A ABC transporter, ATP-bi 86.3 0.43 1.5E-05 33.5 2.5 21 3-23 40-60 (256)
494 4a1f_A DNAB helicase, replicat 86.3 3.8 0.00013 30.0 7.7 40 71-111 42-82 (338)
495 1sq5_A Pantothenate kinase; P- 86.2 0.53 1.8E-05 33.8 3.0 21 4-24 80-100 (308)
496 2ixe_A Antigen peptide transpo 86.1 0.47 1.6E-05 33.5 2.7 21 3-23 44-64 (271)
497 3ug7_A Arsenical pump-driving 86.0 1.1 3.8E-05 32.8 4.7 33 7-40 29-61 (349)
498 2orv_A Thymidine kinase; TP4A 86.0 1.2 4.1E-05 31.0 4.6 40 4-44 19-58 (234)
499 2olj_A Amino acid ABC transpor 85.9 0.46 1.6E-05 33.5 2.5 21 3-23 49-69 (263)
500 1q3t_A Cytidylate kinase; nucl 85.9 0.63 2.2E-05 31.8 3.2 23 3-25 15-37 (236)
No 1
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.64 E-value=7.1e-16 Score=108.77 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh---CCCeEEEEccchhHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI---KQKSAIFILPYISLVHEKY 120 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~---~~~~~~~i~P~~~l~~q~~ 120 (138)
|.....+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|+.|++
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~ 115 (245)
T 3dkp_A 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIH 115 (245)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHH
Confidence 345566777777788899999999988887 999999999999999999999998864 3568999999999999999
Q ss_pred HHHHHHhhhcCceeee
Q psy2029 121 QSLAKAAEEFKFYLEV 136 (138)
Q Consensus 121 ~~~~~~~~~~~~~v~~ 136 (138)
+++++++...++.+..
T Consensus 116 ~~~~~~~~~~~~~~~~ 131 (245)
T 3dkp_A 116 RELIKISEGTGFRIHM 131 (245)
T ss_dssp HHHHHHTTTSCCCEEC
T ss_pred HHHHHHhcccCceEEE
Confidence 9999998887776643
No 2
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=110.44 Aligned_cols=92 Identities=11% Similarity=0.128 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh------CCCeEEEEccchhHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI------KQKSAIFILPYISLVH 117 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~------~~~~~~~i~P~~~l~~ 117 (138)
|..+..+.+.+.++..++++|.++++.+.. +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 456777888888888899999999988777 999999999999999999999998875 4678999999999999
Q ss_pred HHHHHHHHHhhhcCceeee
Q psy2029 118 EKYQSLAKAAEEFKFYLEV 136 (138)
Q Consensus 118 q~~~~~~~~~~~~~~~v~~ 136 (138)
|+++.+++++...+..+..
T Consensus 141 q~~~~~~~~~~~~~~~~~~ 159 (262)
T 3ly5_A 141 QTFGVLKELMTHHVHTYGL 159 (262)
T ss_dssp HHHHHHHHHTTTCCSCEEE
T ss_pred HHHHHHHHHHhhcCceEEE
Confidence 9999999998887766543
No 3
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.63 E-value=1e-15 Score=107.95 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh-------CCCeEEEEccchhHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI-------KQKSAIFILPYISLV 116 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~-------~~~~~~~i~P~~~l~ 116 (138)
|..+..+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|+
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~ 115 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA 115 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHH
Confidence 567778888888888899999999988877 999999999999999999999998874 356899999999999
Q ss_pred HHHHHHHHHHhhhcCceeee
Q psy2029 117 HEKYQSLAKAAEEFKFYLEV 136 (138)
Q Consensus 117 ~q~~~~~~~~~~~~~~~v~~ 136 (138)
.|+++.++++....++.+..
T Consensus 116 ~Q~~~~~~~~~~~~~~~~~~ 135 (242)
T 3fe2_A 116 QQVQQVAAEYCRACRLKSTC 135 (242)
T ss_dssp HHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHhhcCceEEE
Confidence 99999999998887776653
No 4
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=105.66 Aligned_cols=92 Identities=11% Similarity=0.060 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC--CCeEEEEccchhHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~--~~~~~~i~P~~~l~~q~~~ 121 (138)
|..+..+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+... +.+++|++|+++|+.|+++
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~ 129 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISE 129 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHH
Confidence 456777788888888899999999988887 9999999999999999999999988763 4579999999999999999
Q ss_pred HHHHHhhhcCceeee
Q psy2029 122 SLAKAAEEFKFYLEV 136 (138)
Q Consensus 122 ~~~~~~~~~~~~v~~ 136 (138)
.++++....++++..
T Consensus 130 ~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 130 QFEALGSSIGVQSAV 144 (249)
T ss_dssp HHHHHHGGGTCCEEE
T ss_pred HHHHHhccCCeeEEE
Confidence 999998877776543
No 5
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=104.37 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh------CCCeEEEEccchhHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI------KQKSAIFILPYISLVH 117 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~------~~~~~~~i~P~~~l~~ 117 (138)
|.....+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|+.
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~ 111 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAY 111 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHH
Confidence 456778888888888899999999988877 999999999999999999999988753 3578999999999999
Q ss_pred HHHHHHHHHhhhcCceeee
Q psy2029 118 EKYQSLAKAAEEFKFYLEV 136 (138)
Q Consensus 118 q~~~~~~~~~~~~~~~v~~ 136 (138)
|+++.+++++...++.+..
T Consensus 112 q~~~~~~~~~~~~~~~~~~ 130 (236)
T 2pl3_A 112 QTFEVLRKVGKNHDFSAGL 130 (236)
T ss_dssp HHHHHHHHHTTTSSCCEEE
T ss_pred HHHHHHHHHhCCCCeeEEE
Confidence 9999999998776666543
No 6
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.59 E-value=3.7e-15 Score=103.60 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHH
Q psy2029 44 SLVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKY 120 (138)
Q Consensus 44 aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~ 120 (138)
.|.....+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.++++++|+++|+.|.+
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (224)
T 1qde_A 20 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 99 (224)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHH
Confidence 3557778888888888899999999988877 999999999999999999999988764 3468999999999999999
Q ss_pred HHHHHHhhhcCceeee
Q psy2029 121 QSLAKAAEEFKFYLEV 136 (138)
Q Consensus 121 ~~~~~~~~~~~~~v~~ 136 (138)
+.+++++...++.+..
T Consensus 100 ~~~~~~~~~~~~~~~~ 115 (224)
T 1qde_A 100 KVVMALAFHMDIKVHA 115 (224)
T ss_dssp HHHHHHTTTSCCCEEE
T ss_pred HHHHHHhcccCceEEE
Confidence 9999998777766543
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.59 E-value=1.8e-15 Score=130.18 Aligned_cols=98 Identities=21% Similarity=0.353 Sum_probs=84.9
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhhhhHHHhhhhc--cceEEEeecCCCchHhHHHHHHHHHHh-CCCeEEEEccchhHH
Q psy2029 40 LPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQN--KNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLV 116 (138)
Q Consensus 40 ~P~~aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~--~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~~~~i~P~~~l~ 116 (138)
.|..+|.+..++.+....+..+.++|.++++.+.+ +|+++++|||+|||+++++++++.+.. .+.+++|++|++||+
T Consensus 906 lp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa 985 (1724)
T 4f92_B 906 LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALA 985 (1724)
T ss_dssp CBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHH
T ss_pred CCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHH
Confidence 47778888888888776677899999999987754 899999999999999999999999886 467999999999999
Q ss_pred HHHHHHHHHHhh-hcCceeeec
Q psy2029 117 HEKYQSLAKAAE-EFKFYLEVL 137 (138)
Q Consensus 117 ~q~~~~~~~~~~-~~~~~v~~~ 137 (138)
+|+++++++.+. ..|++|..+
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~l 1007 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLL 1007 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEC
T ss_pred HHHHHHHHHHhchhcCCEEEEE
Confidence 999999988665 468888765
No 8
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.58 E-value=3.9e-15 Score=102.18 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~~ 121 (138)
|.++..+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|++|.++
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 89 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 89 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHH
Confidence 456777888888888899999999988887 999999999999999999999987654 34689999999999999999
Q ss_pred HHHHHhhhc-Cceee
Q psy2029 122 SLAKAAEEF-KFYLE 135 (138)
Q Consensus 122 ~~~~~~~~~-~~~v~ 135 (138)
.++++.... ++.+.
T Consensus 90 ~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 90 ICIQVSKHMGGAKVM 104 (206)
T ss_dssp HHHHHTTTSSSCCEE
T ss_pred HHHHHHhhcCCceEE
Confidence 999998766 55543
No 9
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.58 E-value=6.6e-15 Score=102.76 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--------CCCeEEEEccchhH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--------KQKSAIFILPYISL 115 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--------~~~~~~~i~P~~~l 115 (138)
+..+..+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.++++..+.. .+.+++|++|+++|
T Consensus 27 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L 106 (228)
T 3iuy_A 27 QYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTREL 106 (228)
T ss_dssp TCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHH
Confidence 445677888888888899999999988877 999999999999999999999987753 45789999999999
Q ss_pred HHHHHHHHHHHh
Q psy2029 116 VHEKYQSLAKAA 127 (138)
Q Consensus 116 ~~q~~~~~~~~~ 127 (138)
+.|+++.++++.
T Consensus 107 ~~q~~~~~~~~~ 118 (228)
T 3iuy_A 107 ALHVEAECSKYS 118 (228)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999975
No 10
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.58 E-value=4.8e-15 Score=103.82 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~~ 121 (138)
|.....+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|++|+++
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 110 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHS 110 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHH
Confidence 456778888888888899999999988887 999999999999999999999988754 35789999999999999999
Q ss_pred HHHHHhhhc-Cceee
Q psy2029 122 SLAKAAEEF-KFYLE 135 (138)
Q Consensus 122 ~~~~~~~~~-~~~v~ 135 (138)
.++++.... ++++.
T Consensus 111 ~~~~~~~~~~~~~~~ 125 (230)
T 2oxc_A 111 VITAIGIKMEGLECH 125 (230)
T ss_dssp HHHHHTTTSTTCCEE
T ss_pred HHHHHhcccCCceEE
Confidence 999997655 55554
No 11
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.56 E-value=4.5e-15 Score=103.07 Aligned_cols=86 Identities=15% Similarity=0.075 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~~ 121 (138)
|.....+.+.+.+...++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|++|+++
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 90 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYH 90 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHH
Confidence 456777888888888899999999988877 999999999999999999999988764 34689999999999999999
Q ss_pred HHHHHhhhc
Q psy2029 122 SLAKAAEEF 130 (138)
Q Consensus 122 ~~~~~~~~~ 130 (138)
.++++....
T Consensus 91 ~~~~~~~~~ 99 (219)
T 1q0u_A 91 ETLKITKFC 99 (219)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHhhhc
Confidence 999998765
No 12
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=8.9e-15 Score=101.51 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC--CCeEEEEccchhHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~--~~~~~~i~P~~~l~~q~~~ 121 (138)
|.++..+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+... +.+++|++|+++|+.|.++
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 100 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 100 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHH
Confidence 557778888888888899999999988877 9999999999999999999999876542 3589999999999999999
Q ss_pred HHHHHhhhc-Cceee
Q psy2029 122 SLAKAAEEF-KFYLE 135 (138)
Q Consensus 122 ~~~~~~~~~-~~~v~ 135 (138)
+++++.... ++++.
T Consensus 101 ~~~~~~~~~~~~~v~ 115 (220)
T 1t6n_A 101 EYERFSKYMPNVKVA 115 (220)
T ss_dssp HHHHHTTTSTTCCEE
T ss_pred HHHHHHhhCCCceEE
Confidence 999997665 55554
No 13
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.55 E-value=5.4e-15 Score=104.02 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~~ 121 (138)
|.....+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|+.|+++
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 116 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQK 116 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHH
Confidence 556778888888888899999999988877 899999999999999999999987754 35689999999999999999
Q ss_pred HHHHHhhhcCceee
Q psy2029 122 SLAKAAEEFKFYLE 135 (138)
Q Consensus 122 ~~~~~~~~~~~~v~ 135 (138)
.+++++...++.+.
T Consensus 117 ~~~~~~~~~~~~~~ 130 (237)
T 3bor_A 117 VILALGDYMGATCH 130 (237)
T ss_dssp HHHHHTTTTTCCEE
T ss_pred HHHHHhhhcCceEE
Confidence 99999876665543
No 14
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.55 E-value=1.1e-14 Score=110.71 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC-------CCeEEEEccchhHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK-------QKSAIFILPYISLV 116 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~-------~~~~~~i~P~~~l~ 116 (138)
|.....+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++++++++.+... +.++++++|+++|+
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa 142 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELA 142 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHH
Confidence 566788888888888999999999998887 9999999999999999999999988753 45899999999999
Q ss_pred HHHHHHHHHHhhhcCceee
Q psy2029 117 HEKYQSLAKAAEEFKFYLE 135 (138)
Q Consensus 117 ~q~~~~~~~~~~~~~~~v~ 135 (138)
.|+++++++++...++++.
T Consensus 143 ~Q~~~~~~~~~~~~~~~~~ 161 (434)
T 2db3_A 143 IQIFNEARKFAFESYLKIG 161 (434)
T ss_dssp HHHHHHHHHHTTTSSCCCC
T ss_pred HHHHHHHHHHhccCCcEEE
Confidence 9999999999877666543
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=108.40 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCC--------------------
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQ-------------------- 103 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~-------------------- 103 (138)
|...+.+.+...++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+...+
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQY 101 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCC
Confidence 557788888888888999999999998887 99999999999999999999998876422
Q ss_pred CeEEEEccchhHHHHHHHHHHHHhhhcCceee
Q psy2029 104 KSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135 (138)
Q Consensus 104 ~~~~~i~P~~~l~~q~~~~~~~~~~~~~~~v~ 135 (138)
.++++++|+++|+.|+++.++++....++++.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 133 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPC 133 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEE
Confidence 57999999999999999999999877766554
No 16
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.54 E-value=1.2e-14 Score=125.14 Aligned_cols=81 Identities=25% Similarity=0.305 Sum_probs=72.2
Q ss_pred HHhhhhhhhhHHHhhhhc--cceEEEeecCCCchHhHHHHHHHHHHh----------CCCeEEEEccchhHHHHHHHHHH
Q psy2029 57 AEEFKFYLEGKCLEMIQN--KNCVLSIPTSGGKTLVGEILIMKELKI----------KQKSAIFILPYISLVHEKYQSLA 124 (138)
Q Consensus 57 ~~~~~~~~Q~~~~~~~~~--~~~ii~~ptg~GKt~~~~~~~l~~~~~----------~~~~~~~i~P~~~l~~q~~~~~~ 124 (138)
+++.+.++|.++++.+.+ +|+++++|||+|||++|++++++.+.. .+.+++|++|++||++|++++|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 355688999999987654 999999999999999999999999864 24689999999999999999999
Q ss_pred HHhhhcCceeeec
Q psy2029 125 KAAEEFKFYLEVL 137 (138)
Q Consensus 125 ~~~~~~~~~v~~~ 137 (138)
+.+.+.|++|.++
T Consensus 156 ~~~~~~gi~V~~~ 168 (1724)
T 4f92_B 156 KRLATYGITVAEL 168 (1724)
T ss_dssp HHHTTTTCCEEEC
T ss_pred HHHhhCCCEEEEE
Confidence 9999999998875
No 17
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=104.55 Aligned_cols=86 Identities=10% Similarity=0.133 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc---cceEEEeecCCCchHhHHHHHHHHHHhC--CCeEEEEccchhHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN---KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEK 119 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~ii~~ptg~GKt~~~~~~~l~~~~~~--~~~~~~i~P~~~l~~q~ 119 (138)
|.....+.+...++..++++|..+++.+.. +++++.+|||+|||+++.+++++.+... +.+++|++|+++|+.|+
T Consensus 99 l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~ 178 (300)
T 3fmo_B 99 LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT 178 (300)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHH
Confidence 567788888888888999999999987764 7999999999999999999999988653 35899999999999999
Q ss_pred HHHHHHHhhhc
Q psy2029 120 YQSLAKAAEEF 130 (138)
Q Consensus 120 ~~~~~~~~~~~ 130 (138)
++.++++....
T Consensus 179 ~~~~~~l~~~~ 189 (300)
T 3fmo_B 179 GKVIEQMGKFY 189 (300)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHHHhhC
Confidence 99999987654
No 18
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.52 E-value=5.7e-15 Score=104.65 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC-----------CCeEEEEccchhH
Q psy2029 48 EKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK-----------QKSAIFILPYISL 115 (138)
Q Consensus 48 q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~-----------~~~~~~i~P~~~l 115 (138)
...+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+... +.+++|++|+++|
T Consensus 33 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 112 (253)
T 1wrb_A 33 TIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTREL 112 (253)
T ss_dssp STTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHH
Confidence 444556666777889999999988887 9999999999999999999999988642 2589999999999
Q ss_pred HHHHHHHHHHHhhhcCceee
Q psy2029 116 VHEKYQSLAKAAEEFKFYLE 135 (138)
Q Consensus 116 ~~q~~~~~~~~~~~~~~~v~ 135 (138)
+.|+++.++++....++.+.
T Consensus 113 ~~q~~~~~~~~~~~~~~~~~ 132 (253)
T 1wrb_A 113 AIQILSESQKFSLNTPLRSC 132 (253)
T ss_dssp HHHHHHHHHHHHTTSSCCEE
T ss_pred HHHHHHHHHHHhccCCceEE
Confidence 99999999999877666543
No 19
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.50 E-value=4.2e-14 Score=96.97 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh-----CCCeEEEEccchhHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISLVHE 118 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~-----~~~~~~~i~P~~~l~~q 118 (138)
|.+...+.+.+.+...++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|+.|
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q 87 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQ 87 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHH
Confidence 446677888888888899999999988887 999999999999999999999988753 35789999999999999
Q ss_pred HHHHHHHHhhh
Q psy2029 119 KYQSLAKAAEE 129 (138)
Q Consensus 119 ~~~~~~~~~~~ 129 (138)
.++.++++...
T Consensus 88 ~~~~~~~~~~~ 98 (207)
T 2gxq_A 88 VASELTAVAPH 98 (207)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHhhc
Confidence 99999998754
No 20
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.49 E-value=7.4e-14 Score=101.69 Aligned_cols=86 Identities=15% Similarity=0.150 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHH
Q psy2029 47 HEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125 (138)
Q Consensus 47 ~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~ 125 (138)
+++.+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++. +.++++++|+++|+.|.++.+++
T Consensus 3 ~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~ 78 (337)
T 2z0m_A 3 EKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRD 78 (337)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHH
Confidence 5667788888888899999999988877 999999999999999998888763 77899999999999999999999
Q ss_pred HhhhcCceeee
Q psy2029 126 AAEEFKFYLEV 136 (138)
Q Consensus 126 ~~~~~~~~v~~ 136 (138)
+....+..+..
T Consensus 79 ~~~~~~~~~~~ 89 (337)
T 2z0m_A 79 IGRYMDTKVAE 89 (337)
T ss_dssp HTTTSCCCEEE
T ss_pred HhhhcCCcEEE
Confidence 98777766543
No 21
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.49 E-value=5e-14 Score=105.59 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~~ 121 (138)
|..+..+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.++++++|+++|+.|+++
T Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~ 123 (410)
T 2j0s_A 44 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 123 (410)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHH
Confidence 557888888888888899999999988887 999999999999999999999987653 45799999999999999999
Q ss_pred HHHHHhhhcCceeee
Q psy2029 122 SLAKAAEEFKFYLEV 136 (138)
Q Consensus 122 ~~~~~~~~~~~~v~~ 136 (138)
.++++....++.+..
T Consensus 124 ~~~~~~~~~~~~~~~ 138 (410)
T 2j0s_A 124 GLLALGDYMNVQCHA 138 (410)
T ss_dssp HHHHHTTTTTCCEEE
T ss_pred HHHHHhccCCeEEEE
Confidence 999998777766543
No 22
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.48 E-value=7.4e-14 Score=104.24 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHH
Q psy2029 44 SLVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKY 120 (138)
Q Consensus 44 aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~ 120 (138)
.|..+..+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.++++++|+++|+.|.+
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 106 (400)
T 1s2m_A 27 YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTS 106 (400)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHH
Confidence 3557788888888888899999999988877 899999999999999999999987654 3568999999999999999
Q ss_pred HHHHHHhhhcCceeee
Q psy2029 121 QSLAKAAEEFKFYLEV 136 (138)
Q Consensus 121 ~~~~~~~~~~~~~v~~ 136 (138)
+.+++++...++.+..
T Consensus 107 ~~~~~~~~~~~~~~~~ 122 (400)
T 1s2m_A 107 QVVRTLGKHCGISCMV 122 (400)
T ss_dssp HHHHHHTTTTTCCEEE
T ss_pred HHHHHHhcccCceEEE
Confidence 9999998877776543
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.47 E-value=5.2e-14 Score=104.62 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHH
Q psy2029 44 SLVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKY 120 (138)
Q Consensus 44 aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~ 120 (138)
.|..++.+.+...++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.++++++|+++|+.|.+
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~ 106 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 106 (394)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHH
Confidence 4567888888888888899999999988877 999999999999999999999987764 3569999999999999999
Q ss_pred HHHHHHhhhcCceeee
Q psy2029 121 QSLAKAAEEFKFYLEV 136 (138)
Q Consensus 121 ~~~~~~~~~~~~~v~~ 136 (138)
+.+++++...++.+..
T Consensus 107 ~~~~~~~~~~~~~~~~ 122 (394)
T 1fuu_A 107 KVVMALAFHMDIKVHA 122 (394)
T ss_dssp HHHHHHTTTSCCCEEE
T ss_pred HHHHHHhccCCeeEEE
Confidence 9999998877776653
No 24
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.46 E-value=1.3e-13 Score=102.43 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~~ 121 (138)
|..+..+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.++++++|+++|++|.++
T Consensus 15 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~ 94 (391)
T 1xti_A 15 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 94 (391)
T ss_dssp CCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHH
Confidence 456777888888888899999999988877 999999999999999999999887654 34689999999999999999
Q ss_pred HHHHHhhhc-Cceee
Q psy2029 122 SLAKAAEEF-KFYLE 135 (138)
Q Consensus 122 ~~~~~~~~~-~~~v~ 135 (138)
.++++.... ++++.
T Consensus 95 ~~~~~~~~~~~~~~~ 109 (391)
T 1xti_A 95 EYERFSKYMPNVKVA 109 (391)
T ss_dssp HHHHHTTTCTTCCEE
T ss_pred HHHHHHhhCCCeEEE
Confidence 999997665 55554
No 25
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=103.05 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHH
Q psy2029 44 SLVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKY 120 (138)
Q Consensus 44 aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~ 120 (138)
.+.....+.+.+.+...++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.++++++|+++|+.|.+
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 125 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQ 125 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHH
Confidence 3556777888888888899999999988877 899999999999999999999987765 4578999999999999999
Q ss_pred HHHHHHhhhcCceeee
Q psy2029 121 QSLAKAAEEFKFYLEV 136 (138)
Q Consensus 121 ~~~~~~~~~~~~~v~~ 136 (138)
+.+++++...+..+..
T Consensus 126 ~~~~~~~~~~~~~~~~ 141 (414)
T 3eiq_A 126 KVVMALGDYMGASCHA 141 (414)
T ss_dssp HHHHHHGGGSCCCEEE
T ss_pred HHHHHHhcccCceEEE
Confidence 9999998777766543
No 26
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.45 E-value=2.2e-13 Score=102.48 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=68.4
Q ss_pred HHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhc
Q psy2029 52 SLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130 (138)
Q Consensus 52 ~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~ 130 (138)
.+.+.....++++|.++++.+.+ +++++.+|||+|||+++++++++.+ ..+.+++|++|+++|+.|+++.+++++. .
T Consensus 13 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~ 90 (414)
T 3oiy_A 13 FFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLAD-E 90 (414)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCC-S
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHcc-C
Confidence 33333333578999999988887 9999999999999998888777654 4578999999999999999999999876 6
Q ss_pred Cceeeec
Q psy2029 131 KFYLEVL 137 (138)
Q Consensus 131 ~~~v~~~ 137 (138)
|+++..+
T Consensus 91 ~~~v~~~ 97 (414)
T 3oiy_A 91 KVKIFGF 97 (414)
T ss_dssp SCCEEEC
T ss_pred CceEEEE
Confidence 6666543
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.44 E-value=2.1e-13 Score=101.18 Aligned_cols=91 Identities=13% Similarity=0.174 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc---cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN---KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEK 119 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~ 119 (138)
|.....+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.++++++|+++|+.|.
T Consensus 12 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 91 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQT 91 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHH
Confidence 456778888888888999999999977654 789999999999999999999987764 356899999999999999
Q ss_pred HHHHHHHhhhcCceee
Q psy2029 120 YQSLAKAAEEFKFYLE 135 (138)
Q Consensus 120 ~~~~~~~~~~~~~~v~ 135 (138)
++.++++....++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~ 107 (395)
T 3pey_A 92 LEVVQEMGKFTKITSQ 107 (395)
T ss_dssp HHHHHHHTTTSCCCEE
T ss_pred HHHHHHHhcccCeeEE
Confidence 9999998876665543
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.44 E-value=1.6e-13 Score=110.02 Aligned_cols=92 Identities=26% Similarity=0.423 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhh-hhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEM-IQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~-~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~ 122 (138)
|.....+.+.+.++..++++|.++++. +.+ +++++++|||+|||+++.+++++.+...+.+++|++|+++|+.|++++
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~ 87 (720)
T 2zj8_A 8 VDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQE 87 (720)
T ss_dssp SCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHH
Confidence 345566677777777899999999976 666 999999999999999999999988876688999999999999999999
Q ss_pred HHHHhhhcCceeeec
Q psy2029 123 LAKAAEEFKFYLEVL 137 (138)
Q Consensus 123 ~~~~~~~~~~~v~~~ 137 (138)
++++ .+.|++|..+
T Consensus 88 ~~~l-~~~g~~v~~~ 101 (720)
T 2zj8_A 88 FQDW-EKIGLRVAMA 101 (720)
T ss_dssp TGGG-GGGTCCEEEE
T ss_pred HHHH-HhcCCEEEEe
Confidence 9644 4557776553
No 29
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.43 E-value=2.7e-13 Score=108.61 Aligned_cols=92 Identities=23% Similarity=0.292 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhh-hhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEM-IQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~-~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~ 122 (138)
|.....+.+.+.++..++++|.++++. +.+ +++++++|||+|||+++.+++++.+...+.+++|++|+++|+.|++++
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~ 94 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLT 94 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHH
Confidence 345666667777777899999999977 555 999999999999999999999998876688999999999999999999
Q ss_pred HHHHhhhcCceeeec
Q psy2029 123 LAKAAEEFKFYLEVL 137 (138)
Q Consensus 123 ~~~~~~~~~~~v~~~ 137 (138)
++ .+...|++|..+
T Consensus 95 ~~-~~~~~g~~v~~~ 108 (715)
T 2va8_A 95 FK-DWELIGFKVAMT 108 (715)
T ss_dssp HG-GGGGGTCCEEEC
T ss_pred HH-HhhcCCCEEEEE
Confidence 95 445567776543
No 30
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.43 E-value=2.8e-13 Score=99.58 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc--cceEEEeecCCCchHhHHHHHHHHHHh-CCCeEEEEccchhHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN--KNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~--~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~~~~i~P~~~l~~q~~~ 121 (138)
|.++..+.+.+.+...+.++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.++++++|+++|+.|.++
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 92 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVAD 92 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHH
Confidence 557788888888888899999999977654 689999999999999999998887654 45789999999999999999
Q ss_pred HHHHHhhhcCceee
Q psy2029 122 SLAKAAEEFKFYLE 135 (138)
Q Consensus 122 ~~~~~~~~~~~~v~ 135 (138)
.+++++...++.+.
T Consensus 93 ~~~~~~~~~~~~v~ 106 (367)
T 1hv8_A 93 EIESLKGNKNLKIA 106 (367)
T ss_dssp HHHHHHCSSCCCEE
T ss_pred HHHHHhCCCCceEE
Confidence 99999877666554
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.43 E-value=2.3e-13 Score=106.03 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhh--c-cceEEEeecCCCchHhHHHHHHHHHHhCC------CeEEEEccchhH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQ--N-KNCVLSIPTSGGKTLVGEILIMKELKIKQ------KSAIFILPYISL 115 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~--~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~------~~~~~i~P~~~l 115 (138)
|.....+.+.+.++..++++|.++++.+. + +++++.+|||+|||+++++++++.+...+ .+++|++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 44566677777777789999999997776 4 89999999999999999999999987632 489999999999
Q ss_pred HHHHHHHHHHHhh
Q psy2029 116 VHEKYQSLAKAAE 128 (138)
Q Consensus 116 ~~q~~~~~~~~~~ 128 (138)
+.|+++.++++..
T Consensus 159 a~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 159 ALQIEAEVKKIHD 171 (563)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999764
No 32
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.41 E-value=1.9e-13 Score=96.35 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=50.8
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh-------cCCeEEEEcchhhhHHHHHHHHHHHHHh
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI-------KQKSAIFILPYISLVHEKYQSLAKAAEE 59 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-------~~~~~l~v~P~~aL~~q~~~~l~~~~~~ 59 (138)
++|+|++++||||+|||++|.++++.++.. .+.++++++|+++|..|.++.+.++...
T Consensus 64 ~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 128 (242)
T 3fe2_A 64 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRA 128 (242)
T ss_dssp HHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 468899999999999999999999987763 3568999999999999999999887544
No 33
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.41 E-value=4.9e-13 Score=99.84 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHhhhhc---cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHH
Q psy2029 44 SLVHEKYQSLAKAAEEFKFYLEGKCLEMIQN---KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHE 118 (138)
Q Consensus 44 aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q 118 (138)
.|..+..+.+.+.++..++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.+++|++|+++|+.|
T Consensus 31 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 110 (412)
T 3fht_A 31 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQ 110 (412)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHH
Confidence 4567888888888888999999999977654 789999999999999999999988765 33589999999999999
Q ss_pred HHHHHHHHhhhc
Q psy2029 119 KYQSLAKAAEEF 130 (138)
Q Consensus 119 ~~~~~~~~~~~~ 130 (138)
+++.++++....
T Consensus 111 ~~~~~~~~~~~~ 122 (412)
T 3fht_A 111 TGKVIEQMGKFY 122 (412)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
No 34
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=5.8e-13 Score=104.45 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhh--c-cceEEEeecCCCchHhHHHHHHHHHHhC------CCeEEEEccchhH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQ--N-KNCVLSIPTSGGKTLVGEILIMKELKIK------QKSAIFILPYISL 115 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~--~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~------~~~~~~i~P~~~l 115 (138)
|..++.+.+.+.++..+.++|.++++.+. + +++++.+|||+|||+++.+++++.+... +.+++|++|+++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 34566777777888889999999998776 5 8999999999999999999999988763 3489999999999
Q ss_pred HHHHHHHHHHHhh
Q psy2029 116 VHEKYQSLAKAAE 128 (138)
Q Consensus 116 ~~q~~~~~~~~~~ 128 (138)
+.|+++.+++++.
T Consensus 108 a~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 108 ALQIEAEVKKIHD 120 (579)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.39 E-value=2.8e-13 Score=108.41 Aligned_cols=91 Identities=24% Similarity=0.388 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHH
Q psy2029 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123 (138)
Q Consensus 45 L~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~ 123 (138)
|.....+.+.+.++..++++|.++++.+.+ +++++++|||+|||+++.+++++.+.. +.+++|++|+++|+.|+++++
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCcEEEEeCcHHHHHHHHHHH
Confidence 444555666666777899999999988777 999999999999999999999988764 789999999999999999999
Q ss_pred HHHhhhcCceeeec
Q psy2029 124 AKAAEEFKFYLEVL 137 (138)
Q Consensus 124 ~~~~~~~~~~v~~~ 137 (138)
+ .+.+.|+++..+
T Consensus 89 ~-~~~~~g~~v~~~ 101 (702)
T 2p6r_A 89 K-KWEKIGLRIGIS 101 (702)
T ss_dssp T-TTTTTTCCEEEE
T ss_pred H-HHHhcCCEEEEE
Confidence 5 445557766543
No 36
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.6e-13 Score=97.98 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=50.7
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh------cCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI------KQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~------~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|++++||||+|||++|.++++..+.+ .+.++++++|+++|+.|+++.+.+++.
T Consensus 89 ~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 89 LEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp HHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred hCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999987764 467899999999999999999998754
No 37
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.38 E-value=1.6e-12 Score=100.35 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=69.3
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC----CCeEEEEccchhHHHHHHHHHHHHhhhcCcee
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK----QKSAIFILPYISLVHEKYQSLAKAAEEFKFYL 134 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~----~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~~v 134 (138)
.++++|.++++.+.+ +++++.+|||+|||+++.+++++.+... +.++++++|+++|+.|+++.+++++...++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 367899999988877 9999999999999999999999888763 67899999999999999999999998887776
Q ss_pred eec
Q psy2029 135 EVL 137 (138)
Q Consensus 135 ~~~ 137 (138)
..+
T Consensus 84 ~~~ 86 (555)
T 3tbk_A 84 ASI 86 (555)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 38
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.38 E-value=7.3e-13 Score=101.49 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhHHHhhhhc---cceEEEeecCCCchHhHHHHHHHHHHhC--CCeEEEEccchhHHHH
Q psy2029 44 SLVHEKYQSLAKAAEEFKFYLEGKCLEMIQN---KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHE 118 (138)
Q Consensus 44 aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~ii~~ptg~GKt~~~~~~~l~~~~~~--~~~~~~i~P~~~l~~q 118 (138)
.|..+..+.+.+.++..++++|.++++.+.. +++++.+|||+|||+++.+++++.+... +.+++|++|+++|+.|
T Consensus 98 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q 177 (479)
T 3fmp_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQ 177 (479)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHH
Confidence 4667888899988899999999999977764 7899999999999999999999877652 3489999999999999
Q ss_pred HHHHHHHHhhh
Q psy2029 119 KYQSLAKAAEE 129 (138)
Q Consensus 119 ~~~~~~~~~~~ 129 (138)
+++.++++...
T Consensus 178 ~~~~~~~~~~~ 188 (479)
T 3fmp_B 178 TGKVIEQMGKF 188 (479)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.37 E-value=2e-12 Score=100.02 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=69.1
Q ss_pred hhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC----CCeEEEEccchhHHHHHHHHHHHHhhhcCce
Q psy2029 59 EFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK----QKSAIFILPYISLVHEKYQSLAKAAEEFKFY 133 (138)
Q Consensus 59 ~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~----~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~~ 133 (138)
..+.++|.++++.+.+ +++++.+|||+|||+++.+++++.+... +.++++++|+++|+.|+++.+++++...+++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 3578899999988876 9999999999999999999999888763 6789999999999999999999999888777
Q ss_pred eeec
Q psy2029 134 LEVL 137 (138)
Q Consensus 134 v~~~ 137 (138)
+..+
T Consensus 86 ~~~~ 89 (556)
T 4a2p_A 86 VQGI 89 (556)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.35 E-value=1.4e-12 Score=103.81 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=71.2
Q ss_pred HHHHHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCC----CeEEEEccchhHHHHHHHHHHHHh
Q psy2029 53 LAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQ----KSAIFILPYISLVHEKYQSLAKAA 127 (138)
Q Consensus 53 l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~----~~~~~i~P~~~l~~q~~~~~~~~~ 127 (138)
+..+++..+.++|.++++.+.+ +++++.+|||+|||+++.+++++.+.... .++++++|+++|+.|+.+.+++++
T Consensus 6 l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 6 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF 85 (696)
T ss_dssp -CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 3445667789999999988876 99999999999999999999998877633 789999999999999999999998
Q ss_pred hhcCceeeec
Q psy2029 128 EEFKFYLEVL 137 (138)
Q Consensus 128 ~~~~~~v~~~ 137 (138)
...++++..+
T Consensus 86 ~~~~~~v~~~ 95 (696)
T 2ykg_A 86 ERHGYRVTGI 95 (696)
T ss_dssp TTTTCCEEEE
T ss_pred ccCCceEEEE
Confidence 8777776543
No 41
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=92.83 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=50.9
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhc--CCeEEEEcchhhhHHHHHHHHHHHHHh
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQSLAKAAEE 59 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~--~~~~l~v~P~~aL~~q~~~~l~~~~~~ 59 (138)
++|+|+++++|||+|||+++.++++..+... +.++++++|+++|..|.++.+.+++..
T Consensus 78 ~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~ 137 (249)
T 3ber_A 78 LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSS 137 (249)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999877663 457999999999999999999887543
No 42
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=91.13 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=49.1
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--------cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--------KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--------~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+|+++++|||+|||+++.++++..+.. .+.++++++|+++|++|..+++.++.
T Consensus 55 ~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 118 (228)
T 3iuy_A 55 LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS 118 (228)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred hCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999887653 46689999999999999999998873
No 43
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.34 E-value=9.5e-13 Score=93.14 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=50.3
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhc-----------CCeEEEEcchhhhHHHHHHHHHHHHHh
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIK-----------QKSAIFILPYISLVHEKYQSLAKAAEE 59 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~-----------~~~~l~v~P~~aL~~q~~~~l~~~~~~ 59 (138)
++|+|+++++|||+|||+++.++++.++... +.++++++|+++|..|.++++.+++..
T Consensus 58 ~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 126 (253)
T 1wrb_A 58 LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLN 126 (253)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred hCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhcc
Confidence 5688999999999999999999999877542 358999999999999999999887543
No 44
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=91.32 Aligned_cols=58 Identities=33% Similarity=0.385 Sum_probs=51.1
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh---cCCeEEEEcchhhhHHHHHHHHHHHHHh
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI---KQKSAIFILPYISLVHEKYQSLAKAAEE 59 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~---~~~~~l~v~P~~aL~~q~~~~l~~~~~~ 59 (138)
++|+|++++||||+|||++|.++++..+.+ ++.++++++|+++|..|.++++.+++..
T Consensus 64 ~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 124 (245)
T 3dkp_A 64 LHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEG 124 (245)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred hCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999999987764 4558999999999999999999887543
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.31 E-value=6.8e-12 Score=101.71 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=69.9
Q ss_pred HhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC----CCeEEEEccchhHHHHHHHHHHHHhhhcCc
Q psy2029 58 EEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK----QKSAIFILPYISLVHEKYQSLAKAAEEFKF 132 (138)
Q Consensus 58 ~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~----~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~ 132 (138)
...+.++|.++++.+.+ +++++.+|||+|||+++.+++++.+... +.++++++|+++|+.|+++.+++++...++
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 45688999999988877 9999999999999999999999888763 678999999999999999999999988777
Q ss_pred eeeec
Q psy2029 133 YLEVL 137 (138)
Q Consensus 133 ~v~~~ 137 (138)
++..+
T Consensus 326 ~v~~~ 330 (797)
T 4a2q_A 326 SVQGI 330 (797)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77654
No 46
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.29 E-value=2.1e-12 Score=98.11 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=50.9
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhc-------CCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIK-------QKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~-------~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|++++||||||||+++.++++.++.+. +.++++++|+++|+.|+++++.+++.
T Consensus 91 ~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 154 (434)
T 2db3_A 91 SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAF 154 (434)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTT
T ss_pred hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999887653 45899999999999999999998754
No 47
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.29 E-value=4.7e-12 Score=88.61 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=50.3
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh------cCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI------KQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~------~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.++++..+.+ .+.++++++|+++|..|..+.+.+++.
T Consensus 60 ~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 60 LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999987643 467899999999999999999988754
No 48
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.28 E-value=3.2e-12 Score=88.61 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=50.0
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.++++..+.. .+.++++++|+++|.+|.++++.++..
T Consensus 39 ~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 97 (219)
T 1q0u_A 39 LRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITK 97 (219)
T ss_dssp HHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred hCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999987654 356899999999999999999988754
No 49
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.28 E-value=5e-12 Score=91.98 Aligned_cols=57 Identities=11% Similarity=0.190 Sum_probs=49.5
Q ss_pred CCC--ccEEEEccCCcchHHHHHHHHHHHHhhc--CCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQN--KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~--~~~~~~~ptg~GKt~~~~~~~~~~~~~~--~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++| +|++++||||||||++|.++++.++... +.++++++|+++|+.|+++.+..++.
T Consensus 127 l~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~ 187 (300)
T 3fmo_B 127 LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGK 187 (300)
T ss_dssp TSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHh
Confidence 455 8999999999999999999999887653 34899999999999999999888753
No 50
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.28 E-value=9.5e-12 Score=98.07 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=68.4
Q ss_pred hHHHHHHHHHH-HHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHH
Q psy2029 45 LVHEKYQSLAK-AAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQS 122 (138)
Q Consensus 45 L~~q~~~~l~~-~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~ 122 (138)
+..+..+.+.+ +++..+.++|.++++.+.+ +++++.+|||+|||+++.++++. .++++++++|+++|+.|+++.
T Consensus 28 l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~----~~g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 28 WSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC----SDGFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp THHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT----SSSEEEEECSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH----cCCcEEEEeCHHHHHHHHHHH
Confidence 44566677777 4777889999999988887 99999999999999999999875 367999999999999999999
Q ss_pred HHHH
Q psy2029 123 LAKA 126 (138)
Q Consensus 123 ~~~~ 126 (138)
++++
T Consensus 104 l~~~ 107 (591)
T 2v1x_A 104 LKQL 107 (591)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9987
No 51
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.27 E-value=2.8e-12 Score=99.26 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHhhhhc---cceEEEeecCCCchHhHHHHHHHHHHhC--CCeEEEEccchhHHHHHHH
Q psy2029 47 HEKYQSLAKAAEEFKFYLEGKCLEMIQN---KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 47 ~q~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~ii~~ptg~GKt~~~~~~~l~~~~~~--~~~~~~i~P~~~l~~q~~~ 121 (138)
....+.+.+.+...+.++|.++++.+.+ +++++.+|||+|||+++.+++++.+... +.+++|++|+++|+.|+++
T Consensus 128 ~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~ 207 (508)
T 3fho_A 128 XXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMD 207 (508)
T ss_dssp -----------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHH
T ss_pred cccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHH
Confidence 3344444455555688899999976654 7899999999999999999999887653 4589999999999999999
Q ss_pred HHHHHhhhcCcee
Q psy2029 122 SLAKAAEEFKFYL 134 (138)
Q Consensus 122 ~~~~~~~~~~~~v 134 (138)
.+++++...++.+
T Consensus 208 ~~~~~~~~~~~~~ 220 (508)
T 3fho_A 208 VVTEMGKYTEVKT 220 (508)
T ss_dssp HHHHHSTTSSCCE
T ss_pred HHHHhCCccCeeE
Confidence 9999987655443
No 52
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.27 E-value=5.2e-12 Score=88.28 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=50.1
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.++++..+.. .+.++++++|+++|.+|.++++.+++.
T Consensus 59 ~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 117 (230)
T 2oxc_A 59 RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGI 117 (230)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 568899999999999999999999887654 356999999999999999999988753
No 53
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.27 E-value=5.9e-12 Score=86.20 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=49.4
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.++++..+.. .+.++++++|+++|.+|.++.+.++..
T Consensus 38 ~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 96 (206)
T 1vec_A 38 LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 96 (206)
T ss_dssp HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred ccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999987644 355899999999999999999988743
No 54
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.26 E-value=1e-11 Score=93.01 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=49.6
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcC--------------------CeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ--------------------KSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~--------------------~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|++++||||+|||+++.++++..+...+ .++++++|+++|+.|.++.+.+++.
T Consensus 50 ~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (417)
T 2i4i_A 50 KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 126 (417)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999998765422 4799999999999999999988754
No 55
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.25 E-value=7.9e-12 Score=86.68 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=49.9
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.++++..+.. ++.++++++|+++|.+|.++.+.+++.
T Consensus 49 ~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (224)
T 1qde_A 49 IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF 107 (224)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred hcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhc
Confidence 568899999999999999999999987654 356999999999999999999988753
No 56
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.25 E-value=8.4e-12 Score=85.40 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=49.6
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh-----cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-----~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+|+++++|||+|||+++.++++..+.+ ++.++++++|+++|..|..+++.++.
T Consensus 36 ~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 36 LEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 468899999999999999999999987753 46689999999999999999998874
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.25 E-value=5.3e-12 Score=88.67 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=50.3
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.++++..+.. .+.++++++|+++|..|.++.+.+++.
T Consensus 65 ~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 123 (237)
T 3bor_A 65 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGD 123 (237)
T ss_dssp HTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999987654 356999999999999999999988754
No 58
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.24 E-value=1.9e-11 Score=87.87 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=60.3
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhh
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~ 129 (138)
.+.++|.++++.+.+ .+.++++|||+|||+++..++...+...+.++++++|+++|++|..++++++...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 478889999987666 7889999999999999988877766555569999999999999999999998654
No 59
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.24 E-value=2e-11 Score=101.63 Aligned_cols=73 Identities=23% Similarity=0.225 Sum_probs=66.0
Q ss_pred HHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcCc
Q psy2029 57 AEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132 (138)
Q Consensus 57 ~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~ 132 (138)
++. + ++|.++++.+.+ +++++.+|||+|||+ +.++++..+...+.++++++|+++|+.|+++.+++++...++
T Consensus 55 g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 55 GEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp CSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 455 7 999999988888 999999999999998 778888888777889999999999999999999999988777
No 60
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.23 E-value=2.8e-11 Score=101.14 Aligned_cols=75 Identities=23% Similarity=0.202 Sum_probs=64.4
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcCceeee
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEV 136 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~~v~~ 136 (138)
.++++|.++++.+.+ +++++.+|||+|||++++.++++.+ ..+.++++++|+++|+.|+++.++++. ..++++..
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~ 153 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFG 153 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEE
Confidence 478999999988887 9999999999999998877776655 457899999999999999999999966 56666654
No 61
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.23 E-value=1.1e-11 Score=85.76 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=49.0
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhc--CCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~--~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+|+++++|||+|||+++.++++..+... +.++++++|+++|.+|.++++.++.
T Consensus 49 ~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 49 ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred hCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999876542 3489999999999999999998874
No 62
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.6e-11 Score=102.54 Aligned_cols=72 Identities=25% Similarity=0.374 Sum_probs=64.5
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcCc
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~ 132 (138)
.++++|.++++.+.+ +++++++|||+|||+++.+++++.+. .+.+++|++|+++|++|++++|++.+...|+
T Consensus 184 ~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgl 256 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-NKQRVIYTSPIKALSNQKYRELLAEFGDVGL 256 (1108)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHTSSEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEcCcHHHHHHHHHHHHHHhCCccE
Confidence 478899999988887 99999999999999999999988764 4789999999999999999999999875544
No 63
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.21 E-value=1.2e-11 Score=95.51 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=51.1
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhc----CCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIK----QKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~----~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.+++...+.+. ++++++++|+++|..|..+++.+++.
T Consensus 17 ~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 17 KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999877653 67999999999999999999998854
No 64
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.21 E-value=3.6e-11 Score=97.32 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=66.5
Q ss_pred hhhhhhhHHHhhhhc-------cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcCc
Q psy2029 60 FKFYLEGKCLEMIQN-------KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 132 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-------~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~ 132 (138)
.++++|.++++.+.+ .+.++.+|||+|||+++.+++++.+.. +.++++++|+++|+.|.++.+++++.+.|+
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi 446 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-GFQTAFMVPTSILAIQHYRRTVESFSKFNI 446 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-TSCEEEECSCHHHHHHHHHHHHHHHTCSSC
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHHhhhcCc
Confidence 688999999854432 488999999999999999999987764 789999999999999999999999988888
Q ss_pred eeeec
Q psy2029 133 YLEVL 137 (138)
Q Consensus 133 ~v~~~ 137 (138)
+|..+
T Consensus 447 ~v~~l 451 (780)
T 1gm5_A 447 HVALL 451 (780)
T ss_dssp CEEEC
T ss_pred eEEEE
Confidence 77643
No 65
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.21 E-value=2e-11 Score=94.91 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHH-HHHhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHH
Q psy2029 44 SLVHEKYQSLAK-AAEEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 44 aL~~q~~~~l~~-~~~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~ 121 (138)
.|..+..+.+.+ +++..+.++|.++++.+.+ +++++.+|||+|||+++.++++. ..++++|++|+++|+.|+++
T Consensus 8 ~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----~~g~~lvi~P~~aL~~q~~~ 83 (523)
T 1oyw_A 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL----LNGLTVVVSPLISLMKDQVD 83 (523)
T ss_dssp SHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH----SSSEEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH----hCCCEEEECChHHHHHHHHH
Confidence 345667777777 5677889999999988887 99999999999999999999875 36789999999999999999
Q ss_pred HHHHH
Q psy2029 122 SLAKA 126 (138)
Q Consensus 122 ~~~~~ 126 (138)
.++++
T Consensus 84 ~l~~~ 88 (523)
T 1oyw_A 84 QLQAN 88 (523)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99876
No 66
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.20 E-value=1.6e-11 Score=94.99 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=50.8
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhc----CCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIK----QKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~----~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.++++..+.+. ++++++++|+++|..|..+++.+++.
T Consensus 20 ~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 20 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999998877653 67999999999999999999998754
No 67
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=82.99 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=60.9
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh-----CCCeEEEEccchhHHHH-HHHHHHHHhhhcCc
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISLVHE-KYQSLAKAAEEFKF 132 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~-----~~~~~~~i~P~~~l~~q-~~~~~~~~~~~~~~ 132 (138)
.++++|.++++.+.+ +++++.+|||+|||+++.+++++.+.. .+.++++++|+++|+.| ..+.++++... ++
T Consensus 33 ~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~ 111 (216)
T 3b6e_A 33 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 111 (216)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TS
T ss_pred CchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-Cc
Confidence 578999999987777 999999999999999999988876654 25789999999999999 66777777543 34
Q ss_pred ee
Q psy2029 133 YL 134 (138)
Q Consensus 133 ~v 134 (138)
.+
T Consensus 112 ~v 113 (216)
T 3b6e_A 112 RV 113 (216)
T ss_dssp CE
T ss_pred eE
Confidence 43
No 68
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.9e-11 Score=100.29 Aligned_cols=71 Identities=25% Similarity=0.370 Sum_probs=62.8
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcC
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 131 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~ 131 (138)
.++++|.++++.+.+ +++++++|||+|||+++.++++..+. .+.+++|++|+++|++|++++|++.+...|
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vg 157 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-NKQRVIYTSPIKALSNQKYRELLAEFGDVG 157 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHHSCEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-cCCeEEEECChHHHHHHHHHHHHHHhCCEE
Confidence 378999999988877 99999999999999999988887664 478999999999999999999999876443
No 69
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.19 E-value=4.8e-11 Score=91.97 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=61.5
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhh
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~ 129 (138)
.++++|.++++.+.+ ++.++++|||+|||+++..++.+.+...+.++++++|+++|+.|.+++|+++...
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 578899999987776 8999999999999999988888777665669999999999999999999988443
No 70
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.19 E-value=1.4e-11 Score=93.87 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=50.5
Q ss_pred CCCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 1 ~~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+++|+|+++++|||||||++|..+++..+.+.+.++++++|+++|+.|+++.+...
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcC
Confidence 46899999999999999999999999877777789999999999999999988654
No 71
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.17 E-value=1.4e-11 Score=91.31 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=48.2
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
+++++++|||+|||+++.++++..+.. .+.++++++|+++|.+|.++.+.+++.
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 100 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGK 100 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999987654 456999999999999999999988753
No 72
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.17 E-value=2.6e-11 Score=91.18 Aligned_cols=55 Identities=31% Similarity=0.424 Sum_probs=48.5
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+|+++++|||+|||+++..+++..+ .++.++++++|+++|+.|.++.+.+++
T Consensus 34 ~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 34 VQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLA 88 (414)
T ss_dssp TTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 5789999999999999998888877644 568899999999999999999998863
No 73
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.17 E-value=4e-11 Score=98.81 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=68.6
Q ss_pred HhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC----CCeEEEEccchhHHHHHHHHHHHHhhhcCc
Q psy2029 58 EEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK----QKSAIFILPYISLVHEKYQSLAKAAEEFKF 132 (138)
Q Consensus 58 ~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~----~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~ 132 (138)
...+.++|.++++.+.+ +++++.+|||+|||+++.+++++.+... +.++++++|+++|+.|+++++++++...++
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 44578899999988877 9999999999999999999998877653 678999999999999999999999987777
Q ss_pred eeeec
Q psy2029 133 YLEVL 137 (138)
Q Consensus 133 ~v~~~ 137 (138)
++..+
T Consensus 326 ~v~~~ 330 (936)
T 4a2w_A 326 SVQGI 330 (936)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 76543
No 74
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.16 E-value=5.3e-11 Score=88.93 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=50.7
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+++++++|||+|||+++.++++..+.. .+.++++++|+++|..|..+.+.+++.
T Consensus 75 ~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 133 (414)
T 3eiq_A 75 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD 133 (414)
T ss_dssp HTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG
T ss_pred hCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999987655 466899999999999999999988754
No 75
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.15 E-value=1.3e-10 Score=87.58 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=61.6
Q ss_pred hhhhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhh
Q psy2029 60 FKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~ 128 (138)
.++++|.++++.+.+.++++.+|||+|||+.+..+++..+...+.++++++|+++|+.|..+++++++.
T Consensus 9 ~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 478899999977666699999999999999999998887766678999999999999999999999964
No 76
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.14 E-value=2.6e-11 Score=92.90 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=48.8
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~ 55 (138)
.+|+++++++|||||||+++.++++..+.+.+.++++++|+++|+.|+++.+..
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g 72 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRG 72 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTT
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcC
Confidence 467899999999999999999999988877788999999999999999988753
No 77
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.14 E-value=8.1e-11 Score=91.71 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=48.1
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcC------CeEEEEcchhhhHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQ------KSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~------~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+|+|++++||||+|||++|.++++.++.+.. .++++++|+++|+.|+++++.++
T Consensus 110 ~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~ 169 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 169 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHH
Confidence 5789999999999999999999998876632 48999999999999999998875
No 78
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.13 E-value=3.4e-11 Score=95.87 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=50.5
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcC----CeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ----KSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~----~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.++++.++.... +++++++|+++|..|..+++.+++.
T Consensus 26 l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 26 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999998776532 7999999999999999999988753
No 79
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.13 E-value=4.2e-11 Score=91.06 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=46.6
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~ 54 (138)
+|+++++++|||||||++|+.++++.+.+.+.++++++|+++|.+|.++.+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC
Confidence 5789999999999999999999887777778899999999999999998774
No 80
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.12 E-value=9.9e-11 Score=93.79 Aligned_cols=54 Identities=31% Similarity=0.520 Sum_probs=49.4
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~ 55 (138)
.+++|+++++|||||||+++.+++++.+.+++++++|++|+++|+.|.++++..
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~ 97 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKD 97 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGG
T ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 578899999999999999999999988776788999999999999999999854
No 81
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.12 E-value=5.6e-11 Score=96.40 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=51.2
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhc----CCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIK----QKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~----~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.+++...+.+. ++++++++|+++|..|..+++.+++.
T Consensus 261 l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 261 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999877663 67999999999999999999999854
No 82
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.12 E-value=8e-11 Score=98.43 Aligned_cols=55 Identities=29% Similarity=0.434 Sum_probs=50.0
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|++++++||||||||++|.++++..+ .++++++|++|+++|++|+++++.+.+
T Consensus 197 ~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 197 DRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp TTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999866 458899999999999999999998864
No 83
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.11 E-value=6.1e-11 Score=88.76 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=49.4
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+|+++++|||+|||+++.++++..+.. .+.++++++|+++|..|.++++.+++
T Consensus 72 ~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 72 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred hCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 578899999999999999999999986643 46799999999999999999988764
No 84
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.11 E-value=6.4e-11 Score=95.02 Aligned_cols=55 Identities=35% Similarity=0.642 Sum_probs=49.9
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
++|+|+++++|||||||+++.++++..+.+++++++|++|+++|+.|+++++.++
T Consensus 37 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 37 LEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp GGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGG
T ss_pred cCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 5688999999999999999999999888767899999999999999999998643
No 85
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.11 E-value=5e-11 Score=94.99 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=62.3
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC-----CCeEEEEccchhHHHHH-HHHHHHHhhh
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK-----QKSAIFILPYISLVHEK-YQSLAKAAEE 129 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~-----~~~~~~i~P~~~l~~q~-~~~~~~~~~~ 129 (138)
.++++|.++++.+.+ +++++.+|||+|||+++.+++++.+... +.++++++|+++|+.|+ .+++++++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 478899999988887 9999999999999999999998877652 27899999999999999 9999999865
No 86
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.10 E-value=1.4e-10 Score=86.48 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=47.2
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++++++++|||+|||+++.++++..+.. .+.++++++|+++|..|..+.+.++.
T Consensus 64 ~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 3899999999999999999999987765 34489999999999999998888763
No 87
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.10 E-value=4.8e-10 Score=90.68 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHHHHHh----hhhhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHH
Q psy2029 43 ISLVHEKYQSLAKAAEE----FKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118 (138)
Q Consensus 43 ~aL~~q~~~~l~~~~~~----~~~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q 118 (138)
..+..+.+..+++.+.. .++++|..+++.+.+.+ +..++||+|||+++.+|++..... +..+++++|+++||.|
T Consensus 53 d~~lpeafA~vrea~~R~lg~~p~~VQ~~~i~~ll~G~-Iaem~TGsGKTlaf~LP~l~~~l~-g~~vlVltPTreLA~Q 130 (853)
T 2fsf_A 53 ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERC-IAEMRTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQR 130 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSSE-EEECCTTSCHHHHHHHHHHHHHTT-SSCCEEEESSHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCChHHHhhcccccCCe-eeeecCCchHHHHHHHHHHHHHHc-CCcEEEEcCCHHHHHH
Confidence 33444555555554433 57899999999888744 999999999999999999876554 6789999999999999
Q ss_pred HHHHHHHHhhhcCceeee
Q psy2029 119 KYQSLAKAAEEFKFYLEV 136 (138)
Q Consensus 119 ~~~~~~~~~~~~~~~v~~ 136 (138)
.++.+..++..+|++|..
T Consensus 131 ~~e~~~~l~~~lgl~v~~ 148 (853)
T 2fsf_A 131 DAENNRPLFEFLGLTVGI 148 (853)
T ss_dssp HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhcCCeEEE
Confidence 999999999999988764
No 88
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.10 E-value=5.4e-11 Score=92.10 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=47.9
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhc--CCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~--~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
+++++++|||+|||+++.++++..+... +.++++++|+++|.+|..+.+.+++.
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~ 214 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGK 214 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHST
T ss_pred CCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999876552 45899999999999999999988753
No 89
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.10 E-value=1.1e-10 Score=86.55 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=48.3
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
++|+++++++|||+|||+++.++++..+.. .+.++++++|+++|.+|..+++.++
T Consensus 43 ~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 43 ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred hcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 578899999999999999999999887654 2458999999999999999888876
No 90
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.10 E-value=2.8e-10 Score=88.50 Aligned_cols=52 Identities=25% Similarity=0.537 Sum_probs=46.2
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+|+++++|||+|||++|.++++. .++++++++|+++|.+|+.+.+.+.+
T Consensus 38 l~g~d~lv~apTGsGKTl~~~lp~l~----~~g~~lvi~P~~aL~~q~~~~l~~~g 89 (523)
T 1oyw_A 38 LSGRDCLVVMPTGGGKSLCYQIPALL----LNGLTVVVSPLISLMKDQVDQLQANG 89 (523)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHH----SSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred HcCCCEEEECCCCcHHHHHHHHHHHH----hCCCEEEECChHHHHHHHHHHHHHcC
Confidence 57899999999999999999999874 36789999999999999999987753
No 91
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.09 E-value=6.1e-10 Score=87.82 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=46.7
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+|+++.+|||+|||++|.++++. .++++++++|+++|..|+.+.+...+
T Consensus 57 l~g~d~lv~~pTGsGKTl~~~lpal~----~~g~~lVisP~~~L~~q~~~~l~~~g 108 (591)
T 2v1x_A 57 MAGKEVFLVMPTGGGKSLCYQLPALC----SDGFTLVICPLISLMEDQLMVLKQLG 108 (591)
T ss_dssp HTTCCEEEECCTTSCTTHHHHHHHHT----SSSEEEEECSCHHHHHHHHHHHHHHT
T ss_pred HcCCCEEEEECCCChHHHHHHHHHHH----cCCcEEEEeCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999875 46799999999999999999988763
No 92
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.1e-10 Score=96.88 Aligned_cols=55 Identities=29% Similarity=0.434 Sum_probs=49.1
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+++++++|||+|||++|.+++...+ .++.+++|++|+++|++|+++++.+.+
T Consensus 99 ~~g~~vLV~apTGSGKTlva~lai~~~l-~~g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 99 DRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp HHTCEEEEECCTTSCHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEECCCCCChHHHHHHHHHHHh-ccCCeEEEECChHHHHHHHHHHHHHHh
Confidence 4688999999999999999999888765 458899999999999999999998864
No 93
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.09 E-value=9.2e-11 Score=89.81 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=46.6
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhc--CCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~--~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++++++||||||||++|.++++.++... +.++++++|+++|..|+++.+.++.
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876542 3389999999999999998888764
No 94
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=2.3e-10 Score=89.71 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=48.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhc------CCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIK------QKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~------~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
+|++++++||||+|||++|.++++..+... +.++++++|+++|+.|+.+++.++.
T Consensus 59 ~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 578999999999999999999999887653 2489999999999999999988763
No 95
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.08 E-value=1.1e-10 Score=87.00 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=49.1
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+++++++|||+|||+++.++++..+.. .+.++++++|+++|..|..+.+.+++
T Consensus 56 ~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 56 ITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp HHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred hcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999987654 35589999999999999999988764
No 96
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.07 E-value=1.5e-10 Score=84.11 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=46.7
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+++++++|||+|||+++..+++. .+.++++++|+++|.+|.++.+.+++
T Consensus 29 ~~~~~~lv~~~TGsGKT~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 29 LQGKNVVVRAKTGSGKTAAYAIPILE----LGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHH----HTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred hcCCCEEEEcCCCCcHHHHHHHHHHh----hcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 46889999999999999999888775 37899999999999999999998864
No 97
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.07 E-value=8.4e-11 Score=87.24 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=49.2
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+++++++|||+|||+++.++++..+.. .+.++++++|+++|..|..+.+.++.
T Consensus 56 ~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 56 IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred hCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999987654 45699999999999999999988764
No 98
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.07 E-value=8.6e-11 Score=93.09 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=49.3
Q ss_pred CCCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHH
Q psy2029 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54 (138)
Q Consensus 1 ~~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~ 54 (138)
+++|+|++++||||||||+++.++++..+..++.++++++|+++|+.|+++.+.
T Consensus 183 l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 183 FRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp GSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc
Confidence 367899999999999999999999998887777899999999999999998874
No 99
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.06 E-value=7e-10 Score=89.83 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=68.0
Q ss_pred HHHhhhhhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcCceee
Q psy2029 56 AAEEFKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135 (138)
Q Consensus 56 ~~~~~~~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~~v~ 135 (138)
.+. .++++|..+++.+.+.+ +..++||+|||+++.+|++..... +..+++++|+++||.|.++.+..++..+|++|.
T Consensus 80 lG~-~pt~VQ~~~ip~ll~G~-Iaea~TGeGKTlaf~LP~~l~aL~-g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALHDGN-IAEMKTGEGKTLTSTLPVYLNALT-GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS-EEECCTTSCHHHHHHHHHHHHHTT-SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCC-CCcHHHHHhhHHHhCCC-EEEccCCcHHHHHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 345 68999999999888844 999999999999999999865543 678999999999999999999999999998876
Q ss_pred e
Q psy2029 136 V 136 (138)
Q Consensus 136 ~ 136 (138)
.
T Consensus 157 ~ 157 (844)
T 1tf5_A 157 L 157 (844)
T ss_dssp E
T ss_pred E
Confidence 4
No 100
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.06 E-value=3.2e-10 Score=94.01 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=59.7
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhh
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~ 128 (138)
.+.++|.++++.+.+ +++++.+|||+|||+++.+++...+ ..+.+++|++|+++|+.|+++++++.+.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~-~~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH-RNMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 368899999988887 9999999999999999988887654 4578999999999999999999999865
No 101
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.05 E-value=1.8e-10 Score=82.75 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=46.8
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++++.++++|||+|||+++..++...+.+.++++++++|+++|.+|..+++.+++
T Consensus 127 ~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 127 VNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp HHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred hcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 3567899999999999999888777655445599999999999999999998874
No 102
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.05 E-value=9.3e-11 Score=89.61 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCCccE-EEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHH
Q psy2029 2 VQNKNC-VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55 (138)
Q Consensus 2 ~~~~~~-~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~ 55 (138)
++++++ ++++|||||||+++..+++.++..++.++++++|+++|.+|+++.+..
T Consensus 16 l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g 70 (451)
T 2jlq_A 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRG 70 (451)
T ss_dssp GSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred HhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcC
Confidence 566666 999999999999999999887777788999999999999999988743
No 103
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.04 E-value=2.8e-10 Score=94.80 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=51.1
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHHhh
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~~~ 60 (138)
++|+|++++||||||||+ +.++++..+..++.++++++|+++|+.|+++.+.+++...
T Consensus 69 l~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 69 LRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp HTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred HhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 578999999999999998 7778777777778899999999999999999999886543
No 104
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.04 E-value=2.1e-10 Score=78.62 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=46.0
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhh-----cCCeEEEEcchhhhHHH-HHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISLVHE-KYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-----~~~~~l~v~P~~aL~~q-~~~~l~~~~ 57 (138)
++++++++++|||+|||+++..++...+.+ .+.++++++|+++|.+| ..+.+.++.
T Consensus 46 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 46 LEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred hcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999988876544 25799999999999999 556666653
No 105
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.03 E-value=1.7e-09 Score=87.93 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHh----hhhhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHH
Q psy2029 44 SLVHEKYQSLAKAAEE----FKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEK 119 (138)
Q Consensus 44 aL~~q~~~~l~~~~~~----~~~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~ 119 (138)
.+..+.+..+++.+.. .++++|..+++.+.+.+ +..++||+|||+++.+|++..... +..+++++|++.|+.|.
T Consensus 91 ~~lpeafA~vrEa~~R~lG~rP~~VQ~~~ip~Ll~G~-Iaem~TGeGKTLa~~LP~~l~aL~-g~~v~VvTpTreLA~Qd 168 (922)
T 1nkt_A 91 DLLPEAFAVAREAAWRVLDQRPFDVQVMGAAALHLGN-VAEMKTGEGKTLTCVLPAYLNALA-GNGVHIVTVNDYLAKRD 168 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTE-EEECCTTSCHHHHTHHHHHHHHTT-TSCEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhHhcCC-EEEecCCCccHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHH
Confidence 3334444444443322 57899999999888744 999999999999999999765554 67899999999999999
Q ss_pred HHHHHHHhhhcCceeee
Q psy2029 120 YQSLAKAAEEFKFYLEV 136 (138)
Q Consensus 120 ~~~~~~~~~~~~~~v~~ 136 (138)
++.+..++..+|++|..
T Consensus 169 ae~m~~l~~~lGLsv~~ 185 (922)
T 1nkt_A 169 SEWMGRVHRFLGLQVGV 185 (922)
T ss_dssp HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhhcCCeEEE
Confidence 99999999999998864
No 106
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.03 E-value=6.4e-10 Score=93.37 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHhhhhc-------cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHH
Q psy2029 48 EKYQSLAKAAEEFKFYLEGKCLEMIQN-------KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 120 (138)
Q Consensus 48 q~~~~l~~~~~~~~~~~Q~~~~~~~~~-------~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~ 120 (138)
...+.+.+.+...++++|.++++.+.+ .+.++++|||+|||.+++++++..+. .+.++++++|+++|++|.+
T Consensus 591 ~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-~g~~vlvlvPt~~La~Q~~ 669 (1151)
T 2eyq_A 591 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-NHKQVAVLVPTTLLAQQHY 669 (1151)
T ss_dssp HHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-hCCeEEEEechHHHHHHHH
Confidence 344555443333468999999955432 38899999999999999888877554 4779999999999999999
Q ss_pred HHHHHHhhhcCceeee
Q psy2029 121 QSLAKAAEEFKFYLEV 136 (138)
Q Consensus 121 ~~~~~~~~~~~~~v~~ 136 (138)
+.+++++...++++..
T Consensus 670 ~~~~~~~~~~~i~v~~ 685 (1151)
T 2eyq_A 670 DNFRDRFANWPVRIEM 685 (1151)
T ss_dssp HHHHHHSTTTTCCEEE
T ss_pred HHHHHHhhcCCCeEEE
Confidence 9999998877776654
No 107
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.02 E-value=3e-10 Score=83.30 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=47.7
Q ss_pred CC-ccEEEEccCCcchHHHHHHHHHHHHhh-cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 3 QN-KNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 3 ~~-~~~~~~~ptg~GKt~~~~~~~~~~~~~-~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
+| +++++++|||+|||+++..+++..+.. .+.++++++|+++|.+|..+++.++.
T Consensus 42 ~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 42 NDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp HTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 45 699999999999999999998876554 46699999999999999999988864
No 108
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.01 E-value=2.9e-10 Score=87.64 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=47.7
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+++++++++|||+|||+++..++...+.+.++++++++|+++|.+|.++++.++
T Consensus 127 ~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 127 VNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp HHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred hcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 457899999999999999988888766555559999999999999999999876
No 109
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.00 E-value=1.8e-10 Score=94.99 Aligned_cols=57 Identities=18% Similarity=0.374 Sum_probs=50.5
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhc----CCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIK----QKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~----~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
++|+|+++++|||+|||+++.+++...+... ++++++++|+++|..|.++++.+++.
T Consensus 261 l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 261 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999998866553 67999999999999999999998754
No 110
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.00 E-value=2.9e-10 Score=91.01 Aligned_cols=53 Identities=36% Similarity=0.662 Sum_probs=47.8
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~ 55 (138)
++|+|+++++|||||||+++.+++++.+. ++++++|++|+++|+.|.+++++.
T Consensus 38 ~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~ 90 (702)
T 2p6r_A 38 FSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKK 90 (702)
T ss_dssp TTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTT
T ss_pred hCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHHHHH
Confidence 56889999999999999999999998765 478999999999999999999853
No 111
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.99 E-value=1.7e-10 Score=91.45 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=58.1
Q ss_pred hhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHH
Q psy2029 59 EFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124 (138)
Q Consensus 59 ~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~ 124 (138)
....|+|..+++.+.+ +++++.+|||+|||+++.+++++++...+.+++|++|+++|+.|+++.++
T Consensus 170 ~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 170 RIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred ccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc
Confidence 3456777666777777 99999999999999999999999988777899999999999999998886
No 112
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.99 E-value=5.5e-10 Score=88.50 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=51.6
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
.+|+++++.||||+|||++++++++.++...+.+++|++|++++..|..+++.....
T Consensus 20 ~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~ 76 (620)
T 4a15_A 20 QKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSS 76 (620)
T ss_dssp HHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999998877788999999999999999999887644
No 113
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.99 E-value=3e-10 Score=90.71 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=49.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+|+|+++++|||||||++|.++++..+...+.++++++|+++|+.|+++.+..+
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL 293 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcC
Confidence 789999999999999999999999887777889999999999999999888543
No 114
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.98 E-value=9.3e-10 Score=84.01 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=55.9
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHH
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~ 126 (138)
.++++|.++++.+.+ .+.++.+|||+|||++++.++.+. +.++++++|+++|+.|..++|+++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhC
Confidence 478899999987777 789999999999999998877653 678999999999999999999984
No 115
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.97 E-value=1.8e-09 Score=85.56 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=62.3
Q ss_pred hhhhhhHHH----hhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcCceee
Q psy2029 61 KFYLEGKCL----EMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135 (138)
Q Consensus 61 ~~~~Q~~~~----~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~~v~ 135 (138)
+.+.|.+.. +.+.+ +++++.+|||+|||++++++++..+...+.+++|++|+++++.|..+++..+....++++.
T Consensus 4 ~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~ 83 (620)
T 4a15_A 4 NRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAI 83 (620)
T ss_dssp -CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEEE
Confidence 455666665 33445 8999999999999999999999988777889999999999999999999998876666554
No 116
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.96 E-value=2.2e-10 Score=87.53 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=52.7
Q ss_pred hhhhhhHHHhhhhc-cce-EEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHH
Q psy2029 61 KFYLEGKCLEMIQN-KNC-VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~-~~~-ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~ 124 (138)
+.++|. +++.+.+ ++. ++.+|||+|||+++.+++++.+...+.+++|++|+++|+.|+++.+.
T Consensus 5 ~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 5 GEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc
Confidence 345564 5666665 555 89999999999999999998888778899999999999999999885
No 117
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.95 E-value=7.6e-10 Score=91.76 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=48.2
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
++|++++++||||||||+++.+++...+ .++.+++|++|+++|..|+++++.+.
T Consensus 52 l~g~~vlv~apTGsGKTlv~~~~i~~~~-~~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 52 EQGDSVFVAAHTSAGKTVVAEYAIAMAH-RNMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp HTTCEEEEECCTTSCSHHHHHHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred HcCCCEEEEECCCCcHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998888754 45889999999999999999999885
No 118
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.94 E-value=1.8e-09 Score=81.38 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=48.9
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
+++ ++++.+|||+|||+++..++...+...+.++++++|+++|..|..+++.++.
T Consensus 22 ~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 22 KET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp GGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred hhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 455 8999999999999999999888766668899999999999999999998873
No 119
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.94 E-value=6.4e-10 Score=92.99 Aligned_cols=55 Identities=31% Similarity=0.424 Sum_probs=48.3
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|+|++++||||||||++++.+++..+ .++.++++++|+++|+.|+++.+.+++
T Consensus 91 l~g~dvlv~ApTGSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 91 VQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp TTTCCEEECCSTTCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 6789999999999999998877777644 568899999999999999999998854
No 120
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.94 E-value=3e-10 Score=90.51 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=49.4
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhc-C----CeEEEEcchhhhHHHH-HHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIK-Q----KSAIFILPYISLVHEK-YQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~-~----~~~l~v~P~~aL~~q~-~~~l~~~~ 57 (138)
++|+++++++|||+|||+++.+++...+... . +++++++|+++|..|. .+++.+++
T Consensus 20 l~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 20 LEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp HSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred HhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 5688999999999999999999998876552 2 7999999999999999 99998875
No 121
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.94 E-value=7.2e-10 Score=84.89 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=48.8
Q ss_pred hhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHH
Q psy2029 71 MIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124 (138)
Q Consensus 71 ~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~ 124 (138)
.+.+ +++++.+|||+|||+++.+++++.+...+.+++|++|+++|+.|+++.++
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc
Confidence 3444 88999999999999999999999888778899999999999999999886
No 122
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.93 E-value=3.4e-10 Score=90.46 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=55.8
Q ss_pred hhhhhhh-----HHHhhhh------c-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHH
Q psy2029 60 FKFYLEG-----KCLEMIQ------N-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126 (138)
Q Consensus 60 ~~~~~Q~-----~~~~~~~------~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~ 126 (138)
.+.++|. .+++.+. + +++++.+|||+|||+++++++++.+...+.+++|++|+++|+.|+++.++.+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL 293 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcC
Confidence 5667788 7775544 5 9999999999999999999999988777889999999999999999988754
No 123
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.92 E-value=2.4e-09 Score=75.30 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=53.7
Q ss_pred hhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHH
Q psy2029 60 FKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~ 126 (138)
.+.++|.+++..+.+ .+.++++|||+|||.++..++.+ .+.++++++|+++|++|..++++++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE----LSTPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH----SCSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 357789999877766 78999999999999999776654 2678999999999999999999883
No 124
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.92 E-value=8.9e-10 Score=83.99 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=48.0
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHH
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~ 126 (138)
+++++.+|||+|||+++++++++.+...+.+++|++|+++|+.|+++.++.+
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcC
Confidence 8999999999999999999999988877789999999999999999988744
No 125
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.91 E-value=1.5e-09 Score=82.44 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=45.7
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHH
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~ 124 (138)
+++++.+|||+|||+++++++++.+...+.+++|++|+++|++|.++.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC
Confidence 68899999999999999999997777778899999999999999988775
No 126
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.88 E-value=8.5e-09 Score=84.02 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=66.0
Q ss_pred hhhhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcCceeee
Q psy2029 60 FKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEV 136 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~~v~~ 136 (138)
.++++|..+++.+.+.+ +..+.||+|||+++.++++..... +..+++++|++.||.|.++.+..++..+|++|..
T Consensus 79 ~Pt~VQ~~~ip~LlqG~-IaeakTGeGKTLvf~Lp~~L~aL~-G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~ 153 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK-IAEMKTGEGKTLVATLAVALNALT-GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGV 153 (997)
T ss_dssp CCCHHHHHHHHHHHTTS-EEECCSTHHHHHHHHHHHHHHHTT-CSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCcHHHHhhcccccCCc-eeeccCCCchHHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 57899999998888744 899999999999999999755554 6689999999999999999999999999998764
No 127
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.87 E-value=2.4e-09 Score=86.75 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=47.7
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~ 58 (138)
.|+++++|||||||++|.++++..+. .+.++++++|+++|+.|.++++.++..
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~-~g~qvlvlaPtr~La~Q~~~~l~~~~~ 442 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYE-AGFQTAFMVPTSILAIQHYRRTVESFS 442 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHH-HTSCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhh
Confidence 48999999999999999999998654 588999999999999999999988753
No 128
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.84 E-value=2.6e-08 Score=69.67 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=57.6
Q ss_pred hhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCC----CeEEEEccchhHHHHHHHHHHHHhh
Q psy2029 61 KFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQ----KSAIFILPYISLVHEKYQSLAKAAE 128 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~----~~~~~i~P~~~l~~q~~~~~~~~~~ 128 (138)
.+++|.++++.+.+ +++++.+|||+|||.....++++.....+ .+++++.|+++++.|.++.+.+...
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 57889999988887 89999999999999888888887766533 3899999999999999998886643
No 129
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.83 E-value=4.3e-09 Score=82.26 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=57.9
Q ss_pred hhhhhhHHHh----hhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcCceee
Q psy2029 61 KFYLEGKCLE----MIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLE 135 (138)
Q Consensus 61 ~~~~Q~~~~~----~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~~v~ 135 (138)
+++.|.+... .+.+ +++++.+|||+|||++++++++. .+.+++|++|+++|+.|..+++..+....++++.
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 4677777663 3445 88999999999999999999987 3789999999999999999999888655555543
No 130
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.79 E-value=5.8e-09 Score=81.51 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=45.8
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
.+|+++++.||||+|||++++++++. .+.+++|++|+++|.+|..+++...
T Consensus 20 ~~~~~~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 20 RNNFLVALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp HTTCEEEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHTTC
T ss_pred HcCCcEEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999887 4789999999999999998887765
No 131
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.78 E-value=6e-09 Score=79.54 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=45.1
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
++++++++++|||+|||+++..++... +.++++++|+++|..|..+++.++
T Consensus 106 ~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 106 LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp TTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGG
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhC
Confidence 456789999999999999998887753 789999999999999999998885
No 132
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.77 E-value=6.5e-09 Score=73.09 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=43.5
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
++++++++++|||+|||.++..++.. .+.++++++|+++|.+|..+++.++
T Consensus 106 ~~~~~~ll~~~tG~GKT~~a~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 106 LVDKRGCIVLPTGSGKTHVAMAAINE----LSTPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp TTTSEEEEEESSSTTHHHHHHHHHHH----SCSCEEEEESSHHHHHHHHHHHGGG
T ss_pred HhCCCEEEEeCCCCCHHHHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 45678999999999999999777664 3688999999999999998887763
No 133
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.76 E-value=1.3e-08 Score=71.16 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=45.3
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcC----CeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQ----KSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~----~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
.+|+++++++|||||||..+..+++......+ .+++++.|++++..|..+++...
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 35789999999999999888888777665533 38999999999999998887654
No 134
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.73 E-value=2.3e-08 Score=84.04 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=44.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
++++++|||+|||+++..+++..+. .+.++++++|+++|++|.++++.+.
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~-~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVD-NHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH-hCCeEEEEechHHHHHHHHHHHHHH
Confidence 8999999999999999988887544 5789999999999999999998865
No 135
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.72 E-value=9.8e-09 Score=80.10 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=44.5
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
.+|+++++.||||+|||++++++++. .+.+++|++|+++|.+|..+++...
T Consensus 24 ~~~~~~~~~a~TGtGKT~~~l~~~~~----~~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 24 KHGKTLLLNAKPGLGKTVFVEVLGMQ----LKKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp HTTCEEEEECCTTSCHHHHHHHHHHH----HTCEEEEEESCHHHHHHHHHHHGGG
T ss_pred HcCCCEEEEcCCCCcHHHHHHHHHHh----CCCcEEEEcCCHHHHHHHHHHHHhc
Confidence 36789999999999999999988765 3789999999999999999877663
No 136
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.72 E-value=1.3e-08 Score=82.57 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=48.7
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHHhhhh
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~~~~~ 62 (138)
++|+ +..|+||+|||++|.+|++.+.+. +..+++++|++.|+.|..+.+..++...+.
T Consensus 96 l~G~--Iaea~TGeGKTlaf~LP~~l~aL~-g~~vlVltptreLA~qd~e~~~~l~~~lgl 153 (844)
T 1tf5_A 96 HDGN--IAEMKTGEGKTLTSTLPVYLNALT-GKGVHVVTVNEYLASRDAEQMGKIFEFLGL 153 (844)
T ss_dssp HTTS--EEECCTTSCHHHHHHHHHHHHHTT-SSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCC--EEEccCCcHHHHHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 4666 999999999999999999855443 778999999999999999999888665443
No 137
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.71 E-value=1.1e-08 Score=82.96 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=48.7
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHHhhhh
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~~~~~ 62 (138)
++|+ +..|+||+|||++|.+|++.+.+ .+..+++++|++.|+.|..+.+.+++...+.
T Consensus 87 l~G~--Iaem~TGsGKTlaf~LP~l~~~l-~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 87 NERC--IAEMRTGEGKTLTATLPAYLNAL-TGKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSSE--EEECCTTSCHHHHHHHHHHHHHT-TSSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCe--eeeecCCchHHHHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 4565 89999999999999999986554 3678999999999999999999988665443
No 138
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.70 E-value=2e-08 Score=80.01 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=44.0
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
.++++++++||||||||.++.+++++ ++.+++++.|+++|..|..+.+.+.
T Consensus 230 ~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEEEEcchHHHHHHHHHHHHHH
Confidence 46789999999999999998887665 4679999999999999999877654
No 139
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.66 E-value=3.3e-08 Score=79.04 Aligned_cols=51 Identities=29% Similarity=0.288 Sum_probs=40.9
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++|++++++||||||||+.++. .+.. .++.+|+.|+++|+.|+++++.+.+
T Consensus 153 l~rk~vlv~apTGSGKT~~al~----~l~~-~~~gl~l~PtR~LA~Qi~~~l~~~g 203 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQ----KYFS-AKSGVYCGPLKLLAHEIFEKSNAAG 203 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHH----HHHH-SSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCCHHHHHHH----HHHh-cCCeEEEeCHHHHHHHHHHHHHhcC
Confidence 5789999999999999994433 3333 3556999999999999999988764
No 140
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.65 E-value=5.3e-08 Score=75.99 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=51.7
Q ss_pred hhhhhhhHHHh----hhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHH
Q psy2029 60 FKFYLEGKCLE----MIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126 (138)
Q Consensus 60 ~~~~~Q~~~~~----~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~ 126 (138)
.+++.|.+... .+.+ +++++.+|||+|||++++++++.. +.+++|++|+++|++|..+++.++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 46778888763 3445 899999999999999999988653 689999999999999999888774
No 141
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.62 E-value=1.8e-08 Score=79.08 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=41.9
Q ss_pred hhhhhhhHHHhhhh-----c-cceEEEeecCCCchHhHHHHHHHHHHh--------CCCeEEEEccchhHHHHHH-HHHH
Q psy2029 60 FKFYLEGKCLEMIQ-----N-KNCVLSIPTSGGKTLVGEILIMKELKI--------KQKSAIFILPYISLVHEKY-QSLA 124 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~-----~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--------~~~~~~~i~P~~~l~~q~~-~~~~ 124 (138)
.++++|.++++.+. . +++++++|||+|||++++..+.+.+.. ..++++|++|+++|+.|.. +.|+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 47789999985442 2 668999999999999985554443332 3479999999999999999 7776
Q ss_pred HHh
Q psy2029 125 KAA 127 (138)
Q Consensus 125 ~~~ 127 (138)
.+.
T Consensus 258 ~~~ 260 (590)
T 3h1t_A 258 PFG 260 (590)
T ss_dssp TTC
T ss_pred hcc
Confidence 553
No 142
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.59 E-value=3.9e-08 Score=78.37 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=50.0
Q ss_pred hhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHh
Q psy2029 62 FYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127 (138)
Q Consensus 62 ~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~ 127 (138)
++.|....+.+.+ +++++.+|||+|||..+.+++++ .+.++++++|+++|+.|.++.+.+.+
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEEEEcchHHHHHHHHHHHHHHh
Confidence 3445555555656 88999999999999998887765 46699999999999999999887654
No 143
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.54 E-value=3.4e-08 Score=77.47 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=31.8
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhh--------cCCeEEEEcchhhhHHHHH-HHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKI--------KQKSAIFILPYISLVHEKY-QSLAKA 56 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~--------~~~~~l~v~P~~aL~~q~~-~~l~~~ 56 (138)
+++++++|||+|||+++...+...+.. .++++++++|+++|.+|.. +.+..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~ 259 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPF 259 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTT
T ss_pred CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 578999999999999986655543332 3579999999999999998 666544
No 144
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.51 E-value=9.1e-08 Score=77.95 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=47.6
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHHhhh
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~~~~ 61 (138)
++|+ +..|+||+|||++|.+|++.+.+. +..+++++|++.|+.|..+.+.+++...+
T Consensus 124 l~G~--Iaem~TGeGKTLa~~LP~~l~aL~-g~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 124 HLGN--VAEMKTGEGKTLTCVLPAYLNALA-GNGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HTTE--EEECCTTSCHHHHTHHHHHHHHTT-TSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred hcCC--EEEecCCCccHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4565 999999999999999999755553 67899999999999999999988765443
No 145
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.43 E-value=1.6e-07 Score=76.73 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHHhhhhh
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFY 63 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~~~~~~ 63 (138)
++|+ +..|+||+|||++|.+|++.+.+. +..+++++|++.|+.|.++.+.+++...+..
T Consensus 92 lqG~--IaeakTGeGKTLvf~Lp~~L~aL~-G~qv~VvTPTreLA~Qdae~m~~l~~~lGLs 150 (997)
T 2ipc_A 92 HEGK--IAEMKTGEGKTLVATLAVALNALT-GKGVHVVTVNDYLARRDAEWMGPVYRGLGLS 150 (997)
T ss_dssp HTTS--EEECCSTHHHHHHHHHHHHHHHTT-CSCCEEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCc--eeeccCCCchHHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 4565 899999999999999999755553 6789999999999999999999986654433
No 146
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.39 E-value=7.5e-07 Score=68.37 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=52.9
Q ss_pred hhhhhhhHHHhhh----hc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHHHHHHHHhhhc
Q psy2029 60 FKFYLEGKCLEMI----QN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAEEF 130 (138)
Q Consensus 60 ~~~~~Q~~~~~~~----~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~~~~~~~~~~~ 130 (138)
.+.++|.++++.+ .. .++++..++|.|||+.++..+ ..+.. ...++++|+| .+|+.|..+++++++...
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCc
Confidence 4678888887433 23 788999999999999985544 44443 2468999999 679999999999997543
No 147
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.39 E-value=6.1e-07 Score=74.38 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=53.1
Q ss_pred hhhhhhHHHhhhhc---cceEEEeecCCCchHhHHHHHHHHHHhC-CCeEEEEccchhHHHHHHHHHHHHh
Q psy2029 61 KFYLEGKCLEMIQN---KNCVLSIPTSGGKTLVGEILIMKELKIK-QKSAIFILPYISLVHEKYQSLAKAA 127 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~---~~~ii~~ptg~GKt~~~~~~~l~~~~~~-~~~~~~i~P~~~l~~q~~~~~~~~~ 127 (138)
++++|.+++..+.. .+++++.+||.|||.++...+.+.+... ..++++|+|+ +|+.|..+++.+++
T Consensus 154 LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 154 LIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp CCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 68899998854443 5788999999999999977666554442 3589999999 99999999998875
No 148
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.36 E-value=5.3e-07 Score=72.14 Aligned_cols=48 Identities=29% Similarity=0.334 Sum_probs=38.6
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHh
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 127 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~ 127 (138)
+++++++|||+|||..+ ++.+.. ..+.+|++|+++|+.|+++.+++..
T Consensus 156 k~vlv~apTGSGKT~~a----l~~l~~-~~~gl~l~PtR~LA~Qi~~~l~~~g 203 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHA----IQKYFS-AKSGVYCGPLKLLAHEIFEKSNAAG 203 (677)
T ss_dssp EEEEEECCTTSSHHHHH----HHHHHH-SSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHH----HHHHHh-cCCeEEEeCHHHHHHHHHHHHHhcC
Confidence 78899999999999844 334433 3456999999999999999998863
No 149
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.35 E-value=1.7e-06 Score=70.28 Aligned_cols=80 Identities=14% Similarity=0.019 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHhhhh-c-cceEEEeecCCCchHhHHHHHHHHHHhC--CCeEEEEccchhHHHHHHHH
Q psy2029 47 HEKYQSLAKAAEEFKFYLEGKCLEMIQ-N-KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQS 122 (138)
Q Consensus 47 ~q~~~~l~~~~~~~~~~~Q~~~~~~~~-~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~--~~~~~~i~P~~~l~~q~~~~ 122 (138)
....+.+...+ ..+.+.|.+.++... + .++++.+|||+|||...-..++...... +.+++++.|+++|+.|+++.
T Consensus 81 ~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~ 159 (773)
T 2xau_A 81 PKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQR 159 (773)
T ss_dssp HHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHH
Confidence 34445554444 567888888885544 4 6789999999999993222222222122 56799999999999999987
Q ss_pred HHHHh
Q psy2029 123 LAKAA 127 (138)
Q Consensus 123 ~~~~~ 127 (138)
+.+..
T Consensus 160 l~~~~ 164 (773)
T 2xau_A 160 VAEEM 164 (773)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76543
No 150
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.35 E-value=5e-07 Score=75.28 Aligned_cols=68 Identities=13% Similarity=0.031 Sum_probs=53.4
Q ss_pred hhhhhhhHHHhhhhc---------------cceEEEeecCCCchHhHHHHHHHHHHhC--CCeEEEEccchhHHHHHHHH
Q psy2029 60 FKFYLEGKCLEMIQN---------------KNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQS 122 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~---------------~~~ii~~ptg~GKt~~~~~~~l~~~~~~--~~~~~~i~P~~~l~~q~~~~ 122 (138)
.+.++|..+++.+.+ ++.++.+|||+|||+++ +++++.+... ..++++++|+++|+.|..+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 367889888854321 57899999999999998 6666655432 36899999999999999999
Q ss_pred HHHHhh
Q psy2029 123 LAKAAE 128 (138)
Q Consensus 123 ~~~~~~ 128 (138)
|.++..
T Consensus 350 f~~f~~ 355 (1038)
T 2w00_A 350 YQRFSP 355 (1038)
T ss_dssp HHTTST
T ss_pred HHHhcc
Confidence 988754
No 151
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.32 E-value=6.2e-07 Score=74.74 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=41.6
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
++++++++|||||||+++ +++...+.. ...++++++|.++|..|..+++..+
T Consensus 300 ~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~f 353 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRF 353 (1038)
T ss_dssp GGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHHTT
T ss_pred CCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHHHh
Confidence 468999999999999998 554554433 2359999999999999998887665
No 152
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.23 E-value=1.2e-05 Score=64.81 Aligned_cols=74 Identities=16% Similarity=0.070 Sum_probs=61.0
Q ss_pred hhhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhhcCceeee
Q psy2029 61 KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEV 136 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~~~v~~ 136 (138)
++++|...+-.+.+ .-+..+.||+|||+++.+|++-.++. +..+.+++|+..||.+-++.+..++..+|+.|..
T Consensus 76 ~~dvQligg~~L~~-G~iaEM~TGEGKTLva~lp~~lnAL~-G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~ 149 (822)
T 3jux_A 76 PFDVQVMGGIALHE-GKVAEMKTGEGKTLAATMPIYLNALI-GKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGV 149 (822)
T ss_dssp CCHHHHHHHHHHHT-TCEEECCTTSCHHHHTHHHHHHHHTT-SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHhC-CChhhccCCCCccHHHHHHHHHHHhc-CCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEE
Confidence 56666655554444 33889999999999999999866665 6778999999999999999999999999998864
No 153
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.18 E-value=3.4e-06 Score=68.46 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=38.7
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhc--CCeEEEEcchhhhHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILPYISLVHEKYQSLAK 55 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~--~~~~l~v~P~~aL~~q~~~~l~~ 55 (138)
+++++++++|||||||......+....... +.+++++.|+++|..|+.+.+.+
T Consensus 108 ~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 108 NNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 456899999999999994333333322222 56799999999999998877654
No 154
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.12 E-value=4.8e-06 Score=63.87 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=41.9
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh-cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
.+.++++..|||+|||+.+...+...... ..+++++++| .+|..|..+++.++.
T Consensus 55 ~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 55 LGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFA 109 (500)
T ss_dssp TTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHC
Confidence 46789999999999999986555543222 3468999999 678899999988874
No 155
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.03 E-value=9.2e-06 Score=67.39 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=42.0
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhh-cCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~-~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+.+++++.|||+|||+++...+...+.. ..+++++++|+ +|..|..+++.+.
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHH
Confidence 4578999999999999997777664433 23489999999 9999999998664
No 156
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.91 E-value=2.9e-05 Score=63.19 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=52.8
Q ss_pred hhhhhhHHHhhh----hc-cceEEEeecCCCchHhHHHHHHHHHHh--CCCeEEEEccchhHHHHHHHHHHHHhhhc
Q psy2029 61 KFYLEGKCLEMI----QN-KNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAAEEF 130 (138)
Q Consensus 61 ~~~~Q~~~~~~~----~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~--~~~~~~~i~P~~~l~~q~~~~~~~~~~~~ 130 (138)
+.++|.+++..+ .. .+.++..++|.|||+.++..+...+.. ..+++++|+| .+|+.|..++|.+++...
T Consensus 237 Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~ 312 (800)
T 3mwy_W 237 LRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDL 312 (800)
T ss_dssp CCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTC
T ss_pred cCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCc
Confidence 567888887422 24 899999999999999986655443322 4578999999 789999999999997543
No 157
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.81 E-value=6.4e-05 Score=59.78 Aligned_cols=69 Identities=25% Similarity=0.266 Sum_probs=52.4
Q ss_pred hhhhhhhHHHhhh---------hc-cceEEEeecCCCchHhHHHHHHHHHHhC------CCeEEEEccchhHHHHHHHHH
Q psy2029 60 FKFYLEGKCLEMI---------QN-KNCVLSIPTSGGKTLVGEILIMKELKIK------QKSAIFILPYISLVHEKYQSL 123 (138)
Q Consensus 60 ~~~~~Q~~~~~~~---------~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~------~~~~~~i~P~~~l~~q~~~~~ 123 (138)
.+.++|.+.+..+ .. .++++..++|.|||+.++..+...+... ..++++|+|. +|+.|..+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 4678888887433 23 6789999999999999966665544331 2468999996 7999999999
Q ss_pred HHHhhh
Q psy2029 124 AKAAEE 129 (138)
Q Consensus 124 ~~~~~~ 129 (138)
.+++..
T Consensus 134 ~~~~~~ 139 (644)
T 1z3i_X 134 GKWLGG 139 (644)
T ss_dssp HHHHGG
T ss_pred HHHcCC
Confidence 999754
No 158
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.58 E-value=0.0001 Score=59.45 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=45.3
Q ss_pred EEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHHhhhh
Q psy2029 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62 (138)
Q Consensus 8 ~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~~~~~ 62 (138)
|..+.||+|||+++.+|++-+.+. |..+.+++|+..|+.+-.+.+.+.....+.
T Consensus 92 iaEM~TGEGKTLva~lp~~lnAL~-G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 92 VAEMKTGEGKTLAATMPIYLNALI-GKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp EEECCTTSCHHHHTHHHHHHHHTT-SSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCCCCccHHHHHHHHHHHhc-CCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 889999999999999998855554 788999999999999988888887654443
No 159
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00015 Score=59.08 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=42.4
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++.++++..++|.|||+.+...+...+.. ..+++|+++| .+|..|-.+++.++.
T Consensus 254 ~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 254 KGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp TTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 57899999999999999986665543222 4668899999 677888888888764
No 160
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.49 E-value=0.00024 Score=56.18 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=53.2
Q ss_pred hhhhhHHHhhhhc-cceEEEeecCCCch--HhHHHHHHHHHHh-CCCeEEEEccchhHHHHHHHHHHHHhhhcC
Q psy2029 62 FYLEGKCLEMIQN-KNCVLSIPTSGGKT--LVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAAEEFK 131 (138)
Q Consensus 62 ~~~Q~~~~~~~~~-~~~ii~~ptg~GKt--~~~~~~~l~~~~~-~~~~~~~i~P~~~l~~q~~~~~~~~~~~~~ 131 (138)
.++|..+++.... +.+++..|+|+||| +.+++..+..+.. .+.++++++||...+.+..+.+......++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 5779988876666 88899999999999 5555555554322 346899999999999998888776655443
No 161
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.0031 Score=43.41 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 41 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P 41 (138)
.|.-+++.+++|+|||..+.-.+.+.+.+.+.+++|+.-
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 466789999999999999977777666666778888753
No 162
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.35 E-value=0.00046 Score=54.88 Aligned_cols=54 Identities=30% Similarity=0.343 Sum_probs=41.1
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhc------CCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIK------QKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~------~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
++.++|+..+||.|||+.+...+...+... .+++|+++|. +|..|-.+++.++.
T Consensus 78 ~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~~~~~ 137 (644)
T 1z3i_X 78 NSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEVGKWL 137 (644)
T ss_dssp TCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHHHHHH
T ss_pred CCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHHHHHc
Confidence 456789999999999999876666543321 2468999996 77788888888874
No 163
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.23 E-value=0.00049 Score=54.45 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=39.7
Q ss_pred CCCccEEEEccCCcchHH--HHHHHHHHHHh-hcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTL--VGEILIMKELK-IKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~--~~~~~~~~~~~-~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+.+..+++++|+|+|||. .+.+..+..+. ..+.+++++.|+.....+..+.+...
T Consensus 162 l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 356789999999999994 44555554332 23558999999999888777665543
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.19 E-value=0.0059 Score=44.41 Aligned_cols=41 Identities=15% Similarity=-0.029 Sum_probs=30.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhc-----CCeEEEEcchh
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIK-----QKSAIFILPYI 43 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~-----~~~~l~v~P~~ 43 (138)
.|+.+++.+|+|+|||..+...+....... +.+++|+.--.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 467789999999999999877766533322 56888886443
No 165
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.18 E-value=0.024 Score=41.02 Aligned_cols=129 Identities=14% Similarity=0.024 Sum_probs=68.8
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHH--h--h-------h--hhhhhH--
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE--E--F-------K--FYLEGK-- 67 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~--~--~-------~--~~~Q~~-- 67 (138)
.|.-+++.+++|+|||..+...+..... .+.+++|+..--. ..+...++..... . . + -.++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE~s-~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~ 144 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSM 144 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESSSC-HHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHH
Confidence 5677899999999999988776665443 4578888753211 1333344332210 0 0 0 011111
Q ss_pred HHhhhhccceEEEeecCCCchHhHHHHHHHHHHh-CCCe--EEEEccchhH------------HHHHHHHHHHHhhhcCc
Q psy2029 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKS--AIFILPYISL------------VHEKYQSLAKAAEEFKF 132 (138)
Q Consensus 68 ~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~--~~~i~P~~~l------------~~q~~~~~~~~~~~~~~ 132 (138)
+...+.+.++.+.-+. +-+...+...++++.. .+.+ .++|.+...+ +.+..+.++.+++.+++
T Consensus 145 a~~~l~~~~i~i~d~~--~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i 222 (315)
T 3bh0_A 145 AIGEISNSNINIFDKA--GQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDV 222 (315)
T ss_dssp HHHHHHTSCEEEECCS--CCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCEEEECCC--CCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 1112222344433322 2445555555565554 3556 7777665443 23455677788888877
Q ss_pred eee
Q psy2029 133 YLE 135 (138)
Q Consensus 133 ~v~ 135 (138)
.|.
T Consensus 223 ~vi 225 (315)
T 3bh0_A 223 VVI 225 (315)
T ss_dssp EEE
T ss_pred eEE
Confidence 654
No 166
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.04 E-value=0.0014 Score=52.11 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=39.3
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
-.+|.+|.|+|||.+....+. ++..++.++|+++|+..-++++.+.+...
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~-~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIIL-QAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-HHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHH-HHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 469999999999987654444 45567889999999988888888777543
No 167
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.92 E-value=0.0012 Score=52.25 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=39.3
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh-cCCeEEEEcchhhhHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAK 55 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-~~~~~l~v~P~~aL~~q~~~~l~~ 55 (138)
.+...+|.+|.|+|||.+....+. ++.. .+.++++++|+..-+++..+.+.+
T Consensus 194 ~~~~~li~GppGTGKT~~~~~~i~-~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 194 QRPLSLIQGPPGTGKTVTSATIVY-HLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHH-HHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCeEEECCCCCCHHHHHHHHHH-HHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 345679999999999987644433 3444 577999999999888888777654
No 168
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.92 E-value=0.021 Score=41.93 Aligned_cols=103 Identities=10% Similarity=-0.029 Sum_probs=55.1
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh-----cCCeEEEEcchhhhHHHHHH-HHHHHHHhhhhhhhhHHHhhhhccc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILPYISLVHEKYQ-SLAKAAEEFKFYLEGKCLEMIQNKN 76 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-----~~~~~l~v~P~~aL~~q~~~-~l~~~~~~~~~~~Q~~~~~~~~~~~ 76 (138)
.|+-+++.+|.|+|||..+...+...... .+++++|+..-..+..+... ..... +++.+. + . .+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~----g~~~~~-~----l-~~ 190 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF----NVDHDA-V----L-DN 190 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT----TCCHHH-H----H-HT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc----CCCHHH-H----H-hc
Confidence 46778999999999999987776654332 36788888654433222222 22222 222211 1 1 23
Q ss_pred eEEEeecCCCchHhHHHHHHHHHH-h--CCCeEEEEccchhHH
Q psy2029 77 CVLSIPTSGGKTLVGEILIMKELK-I--KQKSAIFILPYISLV 116 (138)
Q Consensus 77 ~ii~~ptg~GKt~~~~~~~l~~~~-~--~~~~~~~i~P~~~l~ 116 (138)
+.+.-+. ++......+..+..+. . .+.+.++|....++.
T Consensus 191 l~~~~~~-~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 191 VLYARAY-TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp EEEEECC-STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred eeEeecC-CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 4444333 3333333333333333 3 456778887766554
No 169
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.86 E-value=0.0027 Score=50.09 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=40.9
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhc---CCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIK---QKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~---~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+..++|.||.|||||.+...-+...+.+. ..++++++++.....+..+.+.+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 45789999999999998766665533332 258999999999888888877664
No 170
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.85 E-value=0.043 Score=41.59 Aligned_cols=130 Identities=9% Similarity=-0.033 Sum_probs=68.0
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHH--h--h-------hhhhhh--HHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE--E--F-------KFYLEG--KCL 69 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~--~--~-------~~~~Q~--~~~ 69 (138)
.|.-+++.+|+|+|||..+.-.+.......+.+++|+..--. ..+...++..... . . .-.|+. .+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~ 277 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVA 277 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHH
Confidence 466789999999999999877777655444668888653211 1233333322110 0 0 001111 111
Q ss_pred hhhhccceEEEeecCCCchHhHHHHHHHHHHh-CCCeEEEEccchhHH---------------HHHHHHHHHHhhhcCce
Q psy2029 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLV---------------HEKYQSLAKAAEEFKFY 133 (138)
Q Consensus 70 ~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~~~~i~P~~~l~---------------~q~~~~~~~~~~~~~~~ 133 (138)
..+...++.+.-+ .+-+..-+...++++.. .+.+.++|.+...+. .+..+.++.++..+++.
T Consensus 278 ~~l~~~~l~i~d~--~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~ 355 (444)
T 2q6t_A 278 SRLSEAPIYIDDT--PDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIP 355 (444)
T ss_dssp HHHHTSCEEEECC--TTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhcCCEEEECC--CCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 1222233333322 33344444455555543 467777776654332 34556677777777766
Q ss_pred ee
Q psy2029 134 LE 135 (138)
Q Consensus 134 v~ 135 (138)
|.
T Consensus 356 vi 357 (444)
T 2q6t_A 356 II 357 (444)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 171
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0031 Score=51.47 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh-cCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
.+...+|.+|.|+|||.+....+. ++.. .+.++++++|+..-+++..+.+.+.
T Consensus 374 ~~~~~lI~GppGTGKT~~i~~~i~-~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 374 QRPLSLIQGPPGTGKTVTSATIVY-HLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH-HHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCCEEEECCCCCCHHHHHHHHHH-HHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 345679999999999987644443 3433 5789999999998888888777654
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.80 E-value=0.053 Score=39.90 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=70.1
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHH----hh-------hhhhhhHHH--
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE----EF-------KFYLEGKCL-- 69 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~----~~-------~~~~Q~~~~-- 69 (138)
.|.-+++.+++|+|||..+.-.+..... .+.+++|+..--. ..|...++..... .. .-.|+....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~ 122 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEMS-AEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCF 122 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 4667899999999999998766665443 5778888753111 1233333322110 00 112222111
Q ss_pred hhhhccceEEEeecCCCchHhHHHHHHHHHHh-C-CCeEEEEccchhH------------HHHHHHHHHHHhhhcCceee
Q psy2029 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKI-K-QKSAIFILPYISL------------VHEKYQSLAKAAEEFKFYLE 135 (138)
Q Consensus 70 ~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~-~-~~~~~~i~P~~~l------------~~q~~~~~~~~~~~~~~~v~ 135 (138)
..+.+.++.+. .+ .+-+..-+...++++.. + +...++|.+...+ +.+..+.++.+++.+++.|.
T Consensus 123 ~~l~~~~l~I~-d~-~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi 200 (338)
T 4a1f_A 123 DHLSQKKLFFY-DK-SYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPII 200 (338)
T ss_dssp HHHHHSCEEEE-CC-TTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEE
T ss_pred HHHhcCCeEEe-CC-CCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEE
Confidence 22223344332 22 33355555556666654 3 4566666543322 45667888888888887764
No 173
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.76 E-value=0.073 Score=40.45 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=29.4
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.|+-+++.+|+|+|||..+...+.......+.+++|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56778999999999999987776665444466788875
No 174
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.75 E-value=0.03 Score=38.25 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=28.4
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhc-----CCeEEEEcc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIK-----QKSAIFILP 41 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~-----~~~~l~v~P 41 (138)
.|+-+.+.+|+|+|||..+...+...+... +.+++|+.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 467889999999999998876665433322 567788753
No 175
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.74 E-value=0.016 Score=41.84 Aligned_cols=42 Identities=14% Similarity=0.005 Sum_probs=30.0
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh-----------cC----CeEEEEcchhh
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI-----------KQ----KSAIFILPYIS 44 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-----------~~----~~~l~v~P~~a 44 (138)
.|+-+++.+|.|+|||..+...+....+. .+ .+++|+.--..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 45678999999999999987776653322 23 68888865433
No 176
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.73 E-value=0.072 Score=40.54 Aligned_cols=129 Identities=14% Similarity=0.023 Sum_probs=70.6
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH--H--h---hh------hhhhh--H
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA--E--E---FK------FYLEG--K 67 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~--~--~---~~------~~~Q~--~ 67 (138)
.|.-+++.|++|+|||..+.-.+.....+ +.+++|+..--. ..|...++.... . . .+ ..|+. .
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms-~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~ 273 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSM 273 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSC-TTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHH
Confidence 46678999999999999987777765544 778888753211 123333332211 0 0 00 01111 1
Q ss_pred HHhhhhccceEEEeecCCCchHhHHHHHHHHHHh-CCCe--EEEEccchhH------------HHHHHHHHHHHhhhcCc
Q psy2029 68 CLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKS--AIFILPYISL------------VHEKYQSLAKAAEEFKF 132 (138)
Q Consensus 68 ~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~--~~~i~P~~~l------------~~q~~~~~~~~~~~~~~ 132 (138)
+...+.+.++.+.-+ .+-+...+...++++.. .+.+ .++|.+...+ +.+..+.++.+++.+++
T Consensus 274 a~~~l~~~~l~i~d~--~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v 351 (444)
T 3bgw_A 274 AIGEISNSNINIFDK--AGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDV 351 (444)
T ss_dssp HHHHHHTSCEEEECC--SSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCEEEECC--CCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 112222334443322 24555555555666543 4556 7777654322 34556778888888887
Q ss_pred eee
Q psy2029 133 YLE 135 (138)
Q Consensus 133 ~v~ 135 (138)
.|.
T Consensus 352 ~vi 354 (444)
T 3bgw_A 352 VVI 354 (444)
T ss_dssp EEE
T ss_pred eEE
Confidence 764
No 177
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.73 E-value=0.0026 Score=41.99 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=25.1
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
+|+.+++++|+|+|||..+...+-....+.+.+++++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678999999999999887554443222345455553
No 178
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.73 E-value=0.023 Score=38.24 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=27.3
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 41 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P 41 (138)
.|+-+++.+|+|+|||..+...+. ..+.+++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEEC
Confidence 567789999999999988866655 34778888753
No 179
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.62 E-value=0.0086 Score=47.17 Aligned_cols=68 Identities=12% Similarity=-0.023 Sum_probs=52.7
Q ss_pred hhhhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHhC---CCeEEEEccchhHHHHHHHHHHHHhh
Q psy2029 60 FKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK---QKSAIFILPYISLVHEKYQSLAKAAE 128 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~~---~~~~~~i~P~~~l~~q~~~~~~~~~~ 128 (138)
.+.+-|.+++. ..+..+++.++.|+|||.+....+.+.+... +.+++++++++..+.+..+.+.+...
T Consensus 9 ~Ln~~Q~~av~-~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVA-APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHT-CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHh-CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 35566777765 1237889999999999999877776655542 35899999999999999999988754
No 180
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.62 E-value=0.11 Score=39.88 Aligned_cols=131 Identities=8% Similarity=-0.067 Sum_probs=69.6
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHHhh------------hh--hhhhH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF------------KF--YLEGK 67 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~~~------------~~--~~Q~~ 67 (138)
..|+-+++.+++|+|||..+.-.+.......+.+++|+.---. ..|...++....... .. .+..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~- 317 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ- 317 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH-
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH-
Confidence 3567789999999999999877777644433678888753111 123334332211100 00 0000
Q ss_pred HHhhh-hccceEEEeecCCCchHhHHHHHHHHHHh-CCCeEEEEccchhH------------HHHHHHHHHHHhhhcCce
Q psy2029 68 CLEMI-QNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISL------------VHEKYQSLAKAAEEFKFY 133 (138)
Q Consensus 68 ~~~~~-~~~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~~~~i~P~~~l------------~~q~~~~~~~~~~~~~~~ 133 (138)
..... .+.++.+.-+ .+.-+...+...++++.. .+.+.++|.+...+ +.+..+.++.+++.+++.
T Consensus 318 ~~~~~~~~~~l~i~~~-~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~ 396 (503)
T 1q57_A 318 WFDELFGNDTFHLYDS-FAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV 396 (503)
T ss_dssp HHHHHHTTTCEEEECC-C---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHhccCCEEEECC-CCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCe
Confidence 11111 1244444322 222444455555555543 46777888776543 235667788888888776
Q ss_pred ee
Q psy2029 134 LE 135 (138)
Q Consensus 134 v~ 135 (138)
|.
T Consensus 397 vi 398 (503)
T 1q57_A 397 LV 398 (503)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 181
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.60 E-value=0.0079 Score=47.78 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=49.8
Q ss_pred hhhhhhHHHhhhhc--cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHH
Q psy2029 61 KFYLEGKCLEMIQN--KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~--~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~ 126 (138)
+.+.|.+++..... .-.++.-|.|+|||....-.+. ++..++.++++++|+..-|++..+.+...
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 45678888755543 3457999999999988755444 45556889999999999999988888654
No 182
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.58 E-value=0.044 Score=40.22 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=53.8
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhh-cCCeEEEEcchhhhHHHHHHHHHHHHHhhhhhhhhHHHhhhhc-cceEEEeec
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQN-KNCVLSIPT 83 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~-~~~~~l~v~P~~aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~ii~~pt 83 (138)
-+.+.+|.|+|||..++..+...... .+++++|+..--++.... .++.+ .+ .++++..|+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r---a~~lG---------------vd~d~llv~~~~ 91 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY---LRSMG---------------VDPERVIHTPVQ 91 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH---HHHTT---------------CCGGGEEEEECS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH---HHHhC---------------CCHHHeEEEcCC
Confidence 57899999999999998877765443 278999988755554321 22221 12 456666665
Q ss_pred CCCchHhHH-HHHHHHH---HhCCCeEEEEccchhHH
Q psy2029 84 SGGKTLVGE-ILIMKEL---KIKQKSAIFILPYISLV 116 (138)
Q Consensus 84 g~GKt~~~~-~~~l~~~---~~~~~~~~~i~P~~~l~ 116 (138)
. .--. +.+++.+ .+...+.++|....+|.
T Consensus 92 ~----~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 92 S----LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp B----HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred C----HHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2 2222 3333443 23456777777766663
No 183
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.56 E-value=0.0059 Score=48.38 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=49.1
Q ss_pred hhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh-CCCeEEEEccchhHHHHHHHHHHHH
Q psy2029 61 KFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKA 126 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~~~~i~P~~~l~~q~~~~~~~~ 126 (138)
+.+.|..++..... ...++..|.|+|||....-.+ ..+.. .+.++++++|+..-+.+..+.+.+.
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i-~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH-HHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH-HHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45667777755555 677899999999998875444 44444 5789999999999998888877654
No 184
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0067 Score=49.55 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=49.8
Q ss_pred hhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh-CCCeEEEEccchhHHHHHHHHHHHH
Q psy2029 61 KFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKA 126 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~~~~i~P~~~l~~q~~~~~~~~ 126 (138)
+.+.|..++..... ...++..|.|+|||.+..-.+. .+.. .+.++++++|+..-+.+..+.+.+.
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~-~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVY-HLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHH-HHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH-HHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 44667777765555 6678999999999988754443 3433 5789999999999999999888765
No 185
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.52 E-value=0.0038 Score=45.26 Aligned_cols=36 Identities=22% Similarity=0.129 Sum_probs=26.6
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHh-hcCCeEEEEc
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELK-IKQKSAIFIL 40 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~-~~~~~~l~v~ 40 (138)
+.++++++|+|+|||..+...+. .+. ..+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~-~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH-ELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH-HHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHH-HHHHhcCCcEEEEE
Confidence 57899999999999988754444 344 5566777653
No 186
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.48 E-value=0.046 Score=41.13 Aligned_cols=39 Identities=13% Similarity=0.011 Sum_probs=28.3
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh-----cCCeEEEEcc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILP 41 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-----~~~~~l~v~P 41 (138)
.|+-+.+.+|.|+|||..+...+...+.. .+.+++|+.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 56788999999999999887555443332 2467888754
No 187
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.44 E-value=0.0045 Score=50.55 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=38.6
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh-cCCeEEEEcchhhhHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAK 55 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-~~~~~l~v~P~~aL~~q~~~~l~~ 55 (138)
.+...+|.+|.|+|||.+....+ .++.. .+.++++++|+..-+++..+.+.+
T Consensus 370 ~~~~~lI~GppGTGKT~ti~~~i-~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 370 QRPLSLIQGPPGTGKTVTSATIV-YHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp TSSEEEEECCTTSCHHHHHHHHH-HHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCeEEEEcCCCCCHHHHHHHHH-HHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 34567999999999998764333 34444 577999999998887777776654
No 188
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.31 E-value=0.0063 Score=41.79 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=29.0
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 41 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P 41 (138)
.|+.+++.+|+|+|||..+...+.... ..+.+++|+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEc
Confidence 567889999999999999866655533 45778888753
No 189
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.30 E-value=0.0063 Score=40.81 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=24.3
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
.++++++|+|+|||..+...+ ..+...+.+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~-~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA-NELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-HHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHH-HHHHHcCCeEEEE
Confidence 689999999999999875443 3344445666654
No 190
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.25 E-value=0.17 Score=38.50 Aligned_cols=36 Identities=17% Similarity=-0.001 Sum_probs=26.1
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
+..+++.+|+|+|||..+...+.. +..++.+++++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~-l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF-YKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEe
Confidence 456788999999999877554443 445678887764
No 191
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.17 E-value=0.01 Score=47.26 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=40.1
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhh---cCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKI---KQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~---~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+.+++|.|+.|||||.+...-+...+.+ ...+++++++++....+..+.+...
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4588999999999998876655543333 2358999999988888887777654
No 192
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.14 E-value=0.086 Score=40.81 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcch
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~ 42 (138)
.|+.+.+.+|.|+|||..+...+-.. ...+.+++|+.+-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~-~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA-CANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH-HTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HhCCCCEEEEEEe
Confidence 57788999999999998876655432 2346677777653
No 193
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.11 E-value=0.011 Score=46.40 Aligned_cols=47 Identities=11% Similarity=-0.032 Sum_probs=34.9
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~ 50 (138)
.+..+++.+|.|+|||.+... +...+...+.++++++|+........
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~-l~~~l~~~g~~Vl~~ApT~~Aa~~L~ 249 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKA-VADLAESLGLEVGLCAPTGKAARRLG 249 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHH-HHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHH-HHHHHHhcCCeEEEecCcHHHHHHhH
Confidence 456889999999999977533 33445557889999999987665443
No 194
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.11 E-value=0.015 Score=47.53 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=48.4
Q ss_pred hhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh-CCCeEEEEccchhHHHHHHHHHHHH
Q psy2029 61 KFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKA 126 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~~~~i~P~~~l~~q~~~~~~~~ 126 (138)
+.+.|..++..... ...++..|.|+|||....-. +..+.. .+.++++++|+..-+.+..+.+.+.
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~-i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI-VYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHH-HHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHH-HHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 35567777755545 66789999999999876443 444544 5789999999998888888777654
No 195
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.08 E-value=0.01 Score=50.51 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=41.6
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhc-----CCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIK-----QKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~-----~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
.+.+++|.|..|||||.+..-=+...+.+. ..+++++++|++...+..+.+...
T Consensus 22 ~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 22 TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 367999999999999998766555544441 248999999999888887777664
No 196
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.08 E-value=0.11 Score=35.10 Aligned_cols=39 Identities=18% Similarity=0.030 Sum_probs=26.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh-----cCCeEEEEcc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI-----KQKSAIFILP 41 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~-----~~~~~l~v~P 41 (138)
.|+-+.+.+|+|||||..+...+-..... .+++++++..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~ 67 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 67 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEEC
Confidence 46778999999999998875554432221 1446777654
No 197
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.01 E-value=0.017 Score=46.49 Aligned_cols=53 Identities=15% Similarity=-0.006 Sum_probs=39.9
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhc---CCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIK---QKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~---~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+.+++|.|+.|||||.+...-+...+.+. ..++++++.++....+..+++...
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 45889999999999998766555534332 248999999998887777776654
No 198
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.98 E-value=0.038 Score=41.41 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=55.8
Q ss_pred hhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHh-CCCeEEEEccchhHHHHHHHHHHHHhhhc
Q psy2029 61 KFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAAEEF 130 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~-~~~~~~~i~P~~~l~~q~~~~~~~~~~~~ 130 (138)
+.++|...+..+.. +..++..|-+.|||.+....++..+.. .+.++++++|+...+.+.++.++.++...
T Consensus 164 L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 164 LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 47788888765444 668899999999999887777765554 45689999999999999998888877654
No 199
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.98 E-value=0.02 Score=43.55 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=31.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCC-eEEEEcchhhhHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKY 50 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~-~~l~v~P~~aL~~q~~ 50 (138)
++++.+|.|+|||.+... +...+...+. +++.++|+.....+..
T Consensus 47 ~~li~G~aGTGKT~ll~~-~~~~l~~~~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKF-IIEALISTGETGIILAAPTHAAKKILS 91 (459)
T ss_dssp EEEEECCTTSCHHHHHHH-HHHHHHHTTCCCEEEEESSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH-HHHHHHhcCCceEEEecCcHHHHHHHH
Confidence 899999999999987643 3334555554 7888999876554443
No 200
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.98 E-value=0.096 Score=36.94 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.|+-+++.+|.|+|||..+...+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 577889999999999988866655
No 201
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=95.93 E-value=0.012 Score=44.32 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=29.6
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLV 46 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~ 46 (138)
..++++.+|||||||... -.++..++..+.+++++-|.-++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLRGDRMVIVDPNGDML 94 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHTTCEEEEEEETTHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHCCCcEEEEeCCCchh
Confidence 458999999999999875 334444555677777777765543
No 202
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.93 E-value=0.013 Score=39.91 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=25.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.+.++++++|+|+|||..+...+.. +...+.++.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~-~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR-ANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEE
Confidence 3578999999999999988554443 333355555543
No 203
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.93 E-value=0.036 Score=43.65 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=56.1
Q ss_pred hhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhC-CCeEEEEccchhHHHHHHHHHHHHhhhc
Q psy2029 61 KFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIK-QKSAIFILPYISLVHEKYQSLAKAAEEF 130 (138)
Q Consensus 61 ~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~-~~~~~~i~P~~~l~~q~~~~~~~~~~~~ 130 (138)
+.++|...+..+.. +..++..|-+.|||......++..+... +.+++++.|+...+.+.++.++.++...
T Consensus 164 l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 164 LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 46788888765555 7788999999999998876666666543 4589999999999999998888887655
No 204
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.91 E-value=0.026 Score=49.54 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=61.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHHhhhhhhhhHHHhhhhccceEEEee
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIP 82 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~ii~~p 82 (138)
.|+.+.+.+|.|||||..++..+.+... ++++++|+.+-.+|.... ++..+.+. .+++++-|
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~-~g~~~~~i~~e~~~~~~~---~~~~Gv~~--------------~~l~~~~p 1491 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY---ARKLGVDI--------------DNLLCSQP 1491 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCHHH---HHHTTCCG--------------GGCEEECC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEecCCCCCHHH---HHHcCCCH--------------HHeEEeCC
Confidence 4678999999999999999888877544 589999998877765433 22222211 44566666
Q ss_pred cCCCchHhHHHHHHHHHHh-CCCeEEEEccchhHHH
Q psy2029 83 TSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVH 117 (138)
Q Consensus 83 tg~GKt~~~~~~~l~~~~~-~~~~~~~i~P~~~l~~ 117 (138)
+.+ --.+.++.++.. .....++|.|.-||+.
T Consensus 1492 ~~~----e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1492 DTG----EQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp SSH----HHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred CcH----HHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 543 222455555554 5567888777766653
No 205
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.85 E-value=0.41 Score=36.47 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=27.8
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc--chhh
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL--PYIS 44 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~--P~~a 44 (138)
.-+++++|+|+|||..+.-.+.. +..++.+++++. |+++
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~-l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARY-FQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-HHTTTCCEEEEECCCSST
T ss_pred eEEEEECcCCCCHHHHHHHHHHH-HHHCCCeEEEEeCCCcch
Confidence 45789999999999887555443 455677887764 4554
No 206
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.83 E-value=0.0069 Score=38.70 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=19.2
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+.++++++|+|+|||.++-...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999986543
No 207
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.83 E-value=0.025 Score=45.03 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=54.1
Q ss_pred hhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHh---CCCeEEEEccchhHHHHHHHHHHHHhhhc---Cceee
Q psy2029 62 FYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI---KQKSAIFILPYISLVHEKYQSLAKAAEEF---KFYLE 135 (138)
Q Consensus 62 ~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~---~~~~~~~i~P~~~l~~q~~~~~~~~~~~~---~~~v~ 135 (138)
.+-|.+++.. .+.++++.++.|+|||.+....+.+.+.. ...++++++.++..+.+..+.+.+..... ++.|.
T Consensus 4 ~~~Q~~av~~-~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~~v~ 82 (673)
T 1uaa_A 4 NPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMIS 82 (673)
T ss_dssp CHHHHHHHHC-CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEE
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCCEEE
Confidence 3456666532 13788899999999999887777665554 24689999999999999999998875432 34454
Q ss_pred e
Q psy2029 136 V 136 (138)
Q Consensus 136 ~ 136 (138)
.
T Consensus 83 T 83 (673)
T 1uaa_A 83 T 83 (673)
T ss_dssp E
T ss_pred e
Confidence 4
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.80 E-value=0.028 Score=40.53 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=25.6
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
+.++++++|+|+|||..+-..+.. +...+.+++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~-~~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE-AKKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH-HHHCCCEEEEEE
Confidence 468999999999999887554433 333456677754
No 209
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.80 E-value=0.03 Score=44.01 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=44.6
Q ss_pred hhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHH
Q psy2029 62 FYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121 (138)
Q Consensus 62 ~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~ 121 (138)
.+.|..++..... ..+++..|.|+|||... ..++..+...+.++++++|+...+.+..+
T Consensus 191 ~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 191 SEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 4567777766655 88899999999999776 33445555567899999999988766544
No 210
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.77 E-value=0.017 Score=39.14 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=27.0
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.|+.+.+.+|+|+|||..+...+... ...+++++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG-LRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH-HHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-HHCCCeEEEEE
Confidence 46788999999999998876555433 33467777764
No 211
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.74 E-value=0.014 Score=37.74 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=25.3
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.|+.+.+.+|+|+|||..+-..+-. +...+.+++|+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~-~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ-ALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH-HHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-HHhcCCcEEEEc
Confidence 4678999999999999877554433 223455566653
No 212
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.70 E-value=0.0056 Score=39.11 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=17.2
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.+.++++++|+|+|||.++-
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 35689999999999998874
No 213
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.64 E-value=0.1 Score=46.61 Aligned_cols=92 Identities=21% Similarity=0.159 Sum_probs=54.8
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHHHhhhhhhhhHHHhhhhccceEEEee
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQNKNCVLSIP 82 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~ii~~p 82 (138)
.|+++++++|+|+|||..+...+.... .++.++.|+..--++.... .+.+ +.+. .++.+..|
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~~~~~l~---a~~~----G~dl----------~~l~v~~~ 1487 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY---ARKL----GVDI----------DNLLCSQP 1487 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCCHHH---HHHT----TCCT----------TTCEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcccccCHHH---HHHc----CCCc----------hhceeecC
Confidence 478999999999999999977777654 3588999987654433222 2222 2111 22344444
Q ss_pred cCCCchHhHHHHHHHHHH-hCCCeEEEEccchhHH
Q psy2029 83 TSGGKTLVGEILIMKELK-IKQKSAIFILPYISLV 116 (138)
Q Consensus 83 tg~GKt~~~~~~~l~~~~-~~~~~~~~i~P~~~l~ 116 (138)
.. +. -.+..++++. +...+.|+|.+..+++
T Consensus 1488 ~~-~E---~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1488 DT-GE---QALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp SS-HH---HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred Ch-HH---HHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 32 22 2233344333 3567888888875444
No 214
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.60 E-value=0.017 Score=39.98 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=30.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchh
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 43 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~ 43 (138)
.|.-.++.+|.|+|||..+.-.+.+ +..++.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r-~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR-LEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH-HHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH-HHhcCCEEEEEEecc
Confidence 3556688999999999888666554 445688999887754
No 215
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.59 E-value=0.087 Score=42.43 Aligned_cols=76 Identities=9% Similarity=-0.035 Sum_probs=56.2
Q ss_pred hhhhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHh---CCCeEEEEccchhHHHHHHHHHHHHhhhc--Ccee
Q psy2029 60 FKFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKI---KQKSAIFILPYISLVHEKYQSLAKAAEEF--KFYL 134 (138)
Q Consensus 60 ~~~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~---~~~~~~~i~P~~~l~~q~~~~~~~~~~~~--~~~v 134 (138)
.+.+-|.+++.. .+.++++.++.|+|||.+....+.+.+.. ...++++++.|+..+.+..+.+.+..... ++.|
T Consensus 11 ~Ln~~Q~~av~~-~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~~v 89 (724)
T 1pjr_A 11 HLNKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWI 89 (724)
T ss_dssp TSCHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTSEE
T ss_pred hCCHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCcEE
Confidence 355667777643 23788999999999999987777766654 23589999999999999999998875432 4444
Q ss_pred ee
Q psy2029 135 EV 136 (138)
Q Consensus 135 ~~ 136 (138)
..
T Consensus 90 ~T 91 (724)
T 1pjr_A 90 ST 91 (724)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 216
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.54 E-value=0.022 Score=40.60 Aligned_cols=39 Identities=8% Similarity=-0.053 Sum_probs=27.4
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
-.|+-+++.+|+|+|||..+...+.....+.+.+++|+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 357788999999999998876655543333354777764
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.53 E-value=0.021 Score=39.17 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=26.4
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.|+-+.+.+|.|||||..+...+...+...+..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 57788999999999998876555433424455555554
No 218
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.45 E-value=0.028 Score=37.51 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=29.4
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchh
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 43 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~ 43 (138)
.|.-.++++|.|+|||..+.-.+.+ ....+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~-~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI-YKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH-HHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEEeecc
Confidence 4666789999999999987555554 334577888887763
No 219
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.35 E-value=0.024 Score=42.07 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=27.1
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcch
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~ 42 (138)
.+.++++.+|||+|||...-..+... ...+.+++++-|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YMQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HHCCCEEEEEeCC
Confidence 45689999999999998775555443 3345666665553
No 220
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.27 E-value=0.045 Score=46.66 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=50.6
Q ss_pred hhhhhHHHhhhhccceEEEeecCCCchHhHHHHHHHHHHhC-----CCeEEEEccchhHHHHHHHHHHHHh
Q psy2029 62 FYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIK-----QKSAIFILPYISLVHEKYQSLAKAA 127 (138)
Q Consensus 62 ~~~Q~~~~~~~~~~~~ii~~ptg~GKt~~~~~~~l~~~~~~-----~~~~~~i~P~~~l~~q~~~~~~~~~ 127 (138)
.+-|..++... +.++++.++.|||||.+-.-.+++.+... ..+++++++|++.+.+..+.+.+..
T Consensus 12 t~eQ~~~i~~~-~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 12 TDDQWNAIVST-GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CHHHHHHHHCC-SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCC-CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 44566665322 48999999999999999877777766552 2489999999999999999888754
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.22 E-value=0.032 Score=40.18 Aligned_cols=38 Identities=32% Similarity=0.226 Sum_probs=25.8
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.++.+.+.+|+|+|||..+...+.....+.|.+++++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35678899999999998775544432223466777763
No 222
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.22 E-value=0.044 Score=43.77 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=38.4
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
...+.+.||||||++..-.+.. .++.+++++|...+..|.++++..++
T Consensus 30 ~~~l~g~tgs~kt~~~a~~~~~----~~~~~lvv~~~~~~A~ql~~el~~~~ 77 (664)
T 1c4o_A 30 FVTLLGATGTGKTVTMAKVIEA----LGRPALVLAPNKILAAQLAAEFRELF 77 (664)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH----HTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred cEEEEcCCCcHHHHHHHHHHHH----hCCCEEEEecCHHHHHHHHHHHHHHC
Confidence 4578899999999886433322 25678999999999999999999884
No 223
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.21 E-value=0.08 Score=42.29 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=40.0
Q ss_pred ceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhh
Q psy2029 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129 (138)
Q Consensus 76 ~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~ 129 (138)
...+...||+|||+...-.+ +.. ++++++|+|...++.|.+++|+.++.+
T Consensus 30 ~~~l~g~tgs~kt~~~a~~~-~~~---~~~~lvv~~~~~~A~ql~~el~~~~~~ 79 (664)
T 1c4o_A 30 FVTLLGATGTGKTVTMAKVI-EAL---GRPALVLAPNKILAAQLAAEFRELFPE 79 (664)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHH---TCCEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred cEEEEcCCCcHHHHHHHHHH-HHh---CCCEEEEecCHHHHHHHHHHHHHHCCC
Confidence 45678899999998875333 322 557999999999999999999999754
No 224
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.12 E-value=0.039 Score=38.99 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=17.4
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+.+.+++|||||||...-.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHH
Confidence 577889999999999977533
No 225
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.12 E-value=0.02 Score=37.26 Aligned_cols=23 Identities=35% Similarity=0.180 Sum_probs=18.5
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
..++++++|.|+|||..+...+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 36799999999999988755443
No 226
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.02 E-value=0.017 Score=37.59 Aligned_cols=24 Identities=33% Similarity=0.254 Sum_probs=19.1
Q ss_pred CccEEEEccCCcchHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
..++++++|+|+|||..+...+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999887555443
No 227
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.01 E-value=0.038 Score=40.95 Aligned_cols=42 Identities=21% Similarity=0.098 Sum_probs=31.0
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhh
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISL 45 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL 45 (138)
.|+-+++.+|.|+|||..+...+.. +...+++++|+..-.++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~-~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE-AQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhcCCeEEEEeccccc
Confidence 4667899999999999988666554 33457889998654443
No 228
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.00 E-value=0.037 Score=40.78 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 41 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P 41 (138)
.|+-+++.+|.|+|||..+...+.... ..+.+++|+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~-~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ-AAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEEC
Confidence 467789999999999999877766543 35778888764
No 229
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.99 E-value=0.036 Score=37.38 Aligned_cols=40 Identities=23% Similarity=0.110 Sum_probs=29.8
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchh
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 43 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~ 43 (138)
+|.=.++++|.|+|||..++-.+.+ ...++.+++++.|.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r-~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRR-AKIAKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH-HHHCCCEEEEEEecc
Confidence 3455688999999999887666555 445688999988864
No 230
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.90 E-value=0.031 Score=42.30 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=23.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
.|+.+++.+|||||||..... ++..+....+++++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~a-llg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYA-GLQELNSSERNILTV 201 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHH-HHHHHCCTTSCEEEE
T ss_pred cCCeEEEECCCCCCHHHHHHH-HHhhcCCCCCEEEEe
Confidence 456789999999999977533 333333334555554
No 231
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.88 E-value=0.042 Score=40.66 Aligned_cols=39 Identities=23% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcch
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~ 42 (138)
.|..+++.+|.|+|||..+...+.... ..+.+++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 466789999999999999977766543 357788887653
No 232
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.86 E-value=0.053 Score=40.27 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=23.3
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhc-CCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIK-QKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~-~~~~l~v 39 (138)
.|+.+++++|||||||...-..+- .+... .++++.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~-~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID-YINQTKSYHIITI 171 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH-HHHHHSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh-hcCcCCCcEEEEe
Confidence 567889999999999977533322 22223 4666544
No 233
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.85 E-value=0.023 Score=37.57 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=18.7
Q ss_pred CCCccEEEEccCCcchHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
..|+-+.+++|+|||||...-..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 35778899999999999887543
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.82 E-value=0.019 Score=42.35 Aligned_cols=23 Identities=30% Similarity=0.154 Sum_probs=18.0
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+..+++++|||+|||.++...+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999998855443
No 235
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.77 E-value=0.023 Score=44.11 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=16.8
Q ss_pred CCccEEEEccCCcchHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVG 21 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~ 21 (138)
.|.++++++|||||||...
T Consensus 259 ~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TTCCEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999775
No 236
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=94.77 E-value=0.044 Score=38.85 Aligned_cols=53 Identities=6% Similarity=-0.080 Sum_probs=34.3
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
..|..+++.+.+|+|||..+...+...+ .++.+++|+.-.-. ..+..+++..+
T Consensus 19 ~~gs~~li~g~p~~~~~~l~~qfl~~g~-~~Ge~~~~~~~~e~-~~~l~~~~~~~ 71 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGKDILFYILSRKL-KSDNLVGMFSISYP-LQLIIRILSRF 71 (260)
T ss_dssp TTCEEEEEECSGGGCHHHHHHHHHHHHH-HTTCEEEEEECSSC-HHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHHH-HCCCcEEEEEEeCC-HHHHHHHHHHc
Confidence 4677889987888888866666666544 45889999764222 23445555444
No 237
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.72 E-value=0.024 Score=40.35 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=18.1
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++++++|+|+|||.++-..+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999998855444
No 238
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.67 E-value=0.058 Score=39.91 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=22.8
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhc-CCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIK-QKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~-~~~~l~v 39 (138)
.+..+++++|||||||...-. +...+... +++++.+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~-l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAA-MLDYLNNTKYHHILTI 158 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHH-HHHHHHHHCCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHhcccCCCCcEEEEc
Confidence 456889999999999977533 22223233 4555544
No 239
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.65 E-value=0.055 Score=41.12 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=40.7
Q ss_pred hhhhhhHHHhh----hhc--cceEEEeecCCCchHhHHHHHHHHHHhCCC-eEEEEccchhHHHHHHHH
Q psy2029 61 KFYLEGKCLEM----IQN--KNCVLSIPTSGGKTLVGEILIMKELKIKQK-SAIFILPYISLVHEKYQS 122 (138)
Q Consensus 61 ~~~~Q~~~~~~----~~~--~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~-~~~~i~P~~~l~~q~~~~ 122 (138)
+.+-|..++.. +.+ ..+++..|.|+|||.+.. .++..+...+. +++.++|+...+.+..+.
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTCCCEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCCceEEEecCcHHHHHHHHhh
Confidence 34455555532 222 488999999999998774 44455555444 789999998777655543
No 240
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.64 E-value=0.052 Score=40.34 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.8
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcch
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~ 42 (138)
.|.-+++.+|.|+|||..+...+.... ..+.+++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~-~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ-KAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH-HCCCeEEEEECC
Confidence 466789999999999999877666543 357788888643
No 241
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.025 Score=41.31 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=20.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
.+.++++++|+|+|||.++-..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999988665543
No 242
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.49 E-value=0.029 Score=37.56 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.7
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++.+++.+|.|||||.++-..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467889999999999999855543
No 243
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.43 E-value=0.03 Score=40.84 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.6
Q ss_pred CccEEEEccCCcchHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
++++++++|+|+|||.++...+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998655443
No 244
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.42 E-value=0.028 Score=39.44 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=18.7
Q ss_pred ccEEEEccCCcchHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
.++++++|+|+|||.++-..+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999988655443
No 245
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.42 E-value=0.092 Score=39.81 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=25.6
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhc--CCeEEEEcc
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIK--QKSAIFILP 41 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~--~~~~l~v~P 41 (138)
..++++++|+|+|||..+-..+-. +... +.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~-l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY-VVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH-HHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHHhCCCCeEEEeeH
Confidence 457999999999999887544433 3332 567777543
No 246
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.41 E-value=0.032 Score=39.96 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=19.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++.+++++|+|+|||..+-..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 356799999999999999855443
No 247
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.37 E-value=0.037 Score=37.22 Aligned_cols=24 Identities=17% Similarity=0.157 Sum_probs=19.5
Q ss_pred CCCccEEEEccCCcchHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
..|..+++++|+|||||.++...+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH
Confidence 457788999999999998875543
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.31 E-value=0.033 Score=37.65 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=17.9
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
.|.-+++++|+|+|||.++-..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 4667899999999999887544
No 249
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.30 E-value=0.042 Score=38.67 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=19.1
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
...++++++|+|+|||.++-..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999998855443
No 250
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.30 E-value=0.028 Score=38.47 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=18.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.|.-+++.+|||+|||..+.-.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456689999999999977755443
No 251
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.28 E-value=0.035 Score=40.78 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=19.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+.++++.+|+|+|||.++-..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999855543
No 252
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.27 E-value=0.031 Score=39.64 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=18.9
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++++++.+|+|+|||.++-..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46899999999999998865443
No 253
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.26 E-value=0.034 Score=38.83 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=18.8
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+.++++++|+|+|||.++-...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHHHH
Confidence 35689999999999999885543
No 254
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.24 E-value=0.037 Score=36.49 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.8
Q ss_pred CCCccEEEEccCCcchHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
-+|+.+.+.+|.|||||.++-..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 35778899999999999887443
No 255
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.19 E-value=0.04 Score=39.00 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=19.0
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
..++++++|+|+|||.++-..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998865544
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.17 E-value=0.039 Score=36.74 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=18.2
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
.|+-+.+.+|+|||||.++-..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 5777899999999999887543
No 257
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.17 E-value=0.036 Score=36.38 Aligned_cols=23 Identities=35% Similarity=0.215 Sum_probs=19.0
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+.++++++|+|||||.++...+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999865543
No 258
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.15 E-value=0.04 Score=38.11 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=18.5
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
..++++++|+|+|||.++...+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999998865544
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.14 E-value=0.04 Score=35.71 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=18.3
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
.+..+.+.+|.|||||.++-..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4678899999999999987544
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.11 E-value=0.035 Score=37.29 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=16.9
Q ss_pred CCCccEEEEccCCcchHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
-.|+-+.+++|+|+|||...-..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 35778899999999999876443
No 261
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.06 E-value=0.036 Score=40.95 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=17.4
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.|+.+.+++|||||||...-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 57899999999999997753
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.04 E-value=0.036 Score=40.53 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=17.2
Q ss_pred CccEEEEccCCcchHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
..-+++++|||+|||.++...+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 3456889999999998875443
No 263
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.03 E-value=0.024 Score=37.99 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=27.3
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 7 CVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 7 ~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
++|.+++|||||..++-.+. . +.+++|+..-.....+..+++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~----~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG----D-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC----S-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh----c-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 58999999999999875432 2 567888876554444444444433
No 264
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.03 E-value=1.3 Score=33.54 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=28.8
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhc-CCeEEEEc--chhhhHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIK-QKSAIFIL--PYISLVHE 48 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~-~~~~l~v~--P~~aL~~q 48 (138)
..++++++.|+|||..+.-.+.. +..+ +.+++++. |.+.-..+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~-l~~~~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKF-LREKHKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH-HHHTSCCCEEEEECCCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHhcCCeEEEEecCCCCccHHH
Confidence 35678899999999887555543 4455 77888764 44443333
No 265
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.99 E-value=0.049 Score=35.65 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=19.1
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
++.++++++|.|||||.++...+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45689999999999999886544
No 266
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.98 E-value=0.035 Score=40.47 Aligned_cols=20 Identities=35% Similarity=0.283 Sum_probs=16.1
Q ss_pred EEEEccCCcchHHHHHHHHH
Q psy2029 7 CVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 7 ~~~~~ptg~GKt~~~~~~~~ 26 (138)
+++++|||+|||.++...+-
T Consensus 13 i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHH
Confidence 58899999999988755443
No 267
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.87 E-value=0.037 Score=36.34 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=19.4
Q ss_pred CCCCccEEEEccCCcchHHHHHHHH
Q psy2029 1 MVQNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 1 ~~~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
|..|..+++.+|.|||||.++-..+
T Consensus 1 m~~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 1 MDVGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3467788999999999999885544
No 268
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.81 E-value=0.19 Score=36.58 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=18.4
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
..++++++|.|+|||..+...+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999988755443
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.79 E-value=0.052 Score=36.16 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=18.8
Q ss_pred CCCccEEEEccCCcchHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
-.|..+.+.+|.|||||..+-..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 35778899999999999887543
No 270
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=93.77 E-value=0.15 Score=43.33 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=37.3
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcC-----------CeEEEEcchhhhHHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQ-----------KSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~-----------~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+| +.+|.|..|||||.+-..-++..+...+ .++|.++-|++=..+..+++.+.
T Consensus 16 ~g-~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 16 QG-ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SS-CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 45 4599999999999886665666555322 37899998887666666555543
No 271
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.71 E-value=0.052 Score=39.19 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.3
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+++++++|+|+|||.++-..+.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999855544
No 272
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.71 E-value=0.061 Score=35.71 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.7
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++++++|+|+|||..+...+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999988755443
No 273
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.69 E-value=0.043 Score=38.41 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=16.8
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++++|+|||||.++...+-
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999998855443
No 274
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.69 E-value=0.045 Score=40.32 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=18.8
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
..++++++|+|+|||.++-..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999865543
No 275
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.66 E-value=0.054 Score=39.28 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.5
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+.+++++|.|+|||..+-..+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 6799999999999999865544
No 276
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.64 E-value=0.056 Score=35.71 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=19.6
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++.+++++++.|||||.++-..+-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999855443
No 277
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.59 E-value=0.054 Score=38.70 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=18.3
Q ss_pred ccEEEEccCCcchHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
..+++++|+|+|||..+-..+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999998655443
No 278
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.55 E-value=0.055 Score=41.13 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=19.5
Q ss_pred CccEEEEccCCcchHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
++++++.+|+|+|||..+-..+..
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999998655443
No 279
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.47 E-value=0.052 Score=37.70 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=17.9
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++++.+|+|+|||..+-..+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999988855443
No 280
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.47 E-value=0.064 Score=36.39 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.4
Q ss_pred CCCccEEEEccCCcchHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
..|+-+++++|+|+|||.+.-..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L 39 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNAL 39 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHH
Confidence 35677899999999999876443
No 281
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.43 E-value=0.066 Score=34.81 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=18.0
Q ss_pred CccEEEEccCCcchHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
+..+++++|.|||||.++-..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999985543
No 282
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.35 E-value=0.065 Score=39.39 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.3
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+++++++|+|+|||.++-..+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999865544
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.35 E-value=0.12 Score=37.32 Aligned_cols=36 Identities=17% Similarity=-0.005 Sum_probs=24.3
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
++-+.+.+|+|+|||..+...+.. +...+++++++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~-l~~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM-FVDEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH-HHhcCCEEEEEc
Confidence 445789999999999776444432 334567777653
No 284
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.34 E-value=0.046 Score=35.82 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=17.8
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
+|+-+.+.+|.|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 577789999999999988753
No 285
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.34 E-value=1.5 Score=31.24 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=24.5
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
++.+.+.+|.|+|||..+...+.. +...+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~-~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY-YKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEec
Confidence 456678899999999776444433 334577777763
No 286
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.34 E-value=0.12 Score=40.10 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=27.4
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.|+.+.+.+|.|||||..+...++..+...+...+++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57888999999999999887655555555344455553
No 287
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.31 E-value=0.1 Score=46.62 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=34.8
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKY 50 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~ 50 (138)
.|+++++++|+|+|||..+...+.+.+. ++.+++|+.- -.+.++.+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k-~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEc-cccHHHHH
Confidence 5789999999999999999888877654 4889999753 33333444
No 288
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.30 E-value=0.06 Score=39.19 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=18.7
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+.++++++|+|+|||..+...+.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999988755443
No 289
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.26 E-value=0.14 Score=36.94 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=24.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
.|+.+.+.+|+|+|||...-..+.. +...++++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl-l~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY-YQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH-HHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-HHhcCCEEEEE
Confidence 3567889999999999765443332 23356777665
No 290
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.26 E-value=0.028 Score=41.21 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=24.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.|..+++.+|.|+|||..+...+.. .+.+++|+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~----~G~~VlyIs 155 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA----LGGKDKYAT 155 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH----HHTTSCCEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh----CCCCEEEEE
Confidence 3556799999999999998776654 344555543
No 291
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.22 E-value=0.067 Score=38.58 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.2
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++++.+|+|+|||.++-..+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4799999999999998865533
No 292
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.21 E-value=0.065 Score=38.55 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=18.7
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+.++++.+|+|+|||.++-...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHH
Confidence 35689999999999999885443
No 293
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.17 E-value=0.071 Score=39.15 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=18.8
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++++++|+|+|||.++-..+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999998865543
No 294
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.10 E-value=0.052 Score=39.14 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=19.1
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.++++++.+|+|+|||..+-..+
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la 67 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLA 67 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHHHHH
Confidence 46789999999999998875543
No 295
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.07 E-value=0.075 Score=39.42 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=18.9
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
..++++++|+|+|||.++-..+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998865533
No 296
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.07 E-value=0.071 Score=39.00 Aligned_cols=21 Identities=33% Similarity=0.264 Sum_probs=17.2
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++++|||||||.++...+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998855443
No 297
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.07 E-value=0.17 Score=33.28 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=24.9
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
.|..+++.++.|||||.++-..+-. +...+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~-l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL-LQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HHhcCCeEEEe
Confidence 4567899999999999988554432 33345666554
No 298
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.04 E-value=0.05 Score=39.75 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=16.7
Q ss_pred CCccEEEEccCCcchHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVG 21 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~ 21 (138)
.|+++.+.+|||||||...
T Consensus 170 ~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCCEEEEESTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999864
No 299
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.03 E-value=0.087 Score=34.98 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=20.4
Q ss_pred CCCCccEEEEccCCcchHHHHHHHH
Q psy2029 1 MVQNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 1 ~~~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
|..|..+++.+|.|||||.++...+
T Consensus 1 m~~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 1 MSRGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 4567788999999999999985543
No 300
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.02 E-value=0.077 Score=36.20 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=18.0
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
.|+-+.+.+|+|||||...-..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L 43 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKL 43 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5778899999999999876443
No 301
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.01 E-value=0.15 Score=37.13 Aligned_cols=35 Identities=11% Similarity=-0.108 Sum_probs=24.5
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
++-+.+.+|.|+|||..+...+.. +...+++++++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~-l~~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY-YAELGYKVLIA 139 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH-HHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEE
Confidence 445788999999999776444332 33457788776
No 302
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.01 E-value=0.05 Score=34.90 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=16.0
Q ss_pred cEEEEccCCcchHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~ 24 (138)
.+++++|.|||||.++...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999988554
No 303
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.99 E-value=0.062 Score=38.41 Aligned_cols=22 Identities=23% Similarity=0.313 Sum_probs=18.3
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++++++|+|+|||.++...+.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999998855543
No 304
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.99 E-value=0.061 Score=38.21 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.1
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++++.+|+|+|||.++-..+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999998855444
No 305
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.95 E-value=0.12 Score=37.50 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=23.2
Q ss_pred CCCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEE
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 38 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~ 38 (138)
-.|+.+.+.+|+|||||....+.+- +. .++++.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g--l~--~G~I~~ 156 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH--FL--GGSVLS 156 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH--HH--TCEEEC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh--hc--CceEEE
Confidence 3678889999999999987654433 22 455544
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.93 E-value=0.078 Score=34.45 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=18.2
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
.|..+.+.+|.|||||.++-..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4677899999999999887554
No 307
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.90 E-value=0.081 Score=36.32 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.8
Q ss_pred CCCccEEEEccCCcchHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~ 23 (138)
-.|+-+.+++|.|||||...-.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3577889999999999987644
No 308
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.90 E-value=0.16 Score=35.25 Aligned_cols=33 Identities=12% Similarity=-0.090 Sum_probs=24.5
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
++++.++.|.|||..+.-.+.. +..+|.+++++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~-l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA-QLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH-HHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHCCCCEEEE
Confidence 6899999999999997555554 44567677554
No 309
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.90 E-value=0.16 Score=36.62 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=24.6
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.|+-+.+.+|+|+|||...-..+-. +...++++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~-l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR-LKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH-HHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HHHcCCeEEEEe
Confidence 4567789999999999765443322 233567777653
No 310
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.88 E-value=0.077 Score=39.07 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=16.7
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
-++|++|||||||.++...+.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 468999999999998854433
No 311
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.86 E-value=0.47 Score=37.86 Aligned_cols=50 Identities=26% Similarity=0.244 Sum_probs=39.5
Q ss_pred ceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhhh
Q psy2029 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129 (138)
Q Consensus 76 ~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~~~~~ 129 (138)
...+..-||+|||+...-.+ +. .++++++|+|...++.|.+++|+.++.+
T Consensus 34 ~~~l~g~~gs~k~~~~a~~~-~~---~~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 34 HQTLLGATGTGKTFTVSNLI-KE---VNKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HH---HCCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred cEEEECcCCcHHHHHHHHHH-HH---hCCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 45677889999998774333 22 2557999999999999999999999754
No 312
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.85 E-value=0.15 Score=44.91 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=32.3
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchh
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 43 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~ 43 (138)
.|+++++++|+|+|||..+...+...+. .+.+++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~-~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-CCCceEEEEecC
Confidence 4788999999999999999887776554 477899986543
No 313
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.80 E-value=0.21 Score=36.23 Aligned_cols=36 Identities=28% Similarity=0.287 Sum_probs=24.5
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhc---CCeEEEEc
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIK---QKSAIFIL 40 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~---~~~~l~v~ 40 (138)
+..+++++|.|+|||..+...+-. +... +...+++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~-~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK-LHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH-HHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEE
Confidence 568999999999999887554433 3332 44566654
No 314
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.77 E-value=0.19 Score=37.65 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=33.2
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHH
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~ 117 (138)
.++++..|||+|||... ..++..+...+..++++.|-.++..
T Consensus 54 ~h~~i~G~tGsGKs~~~-~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLL-RELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHH-HHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHCCCcEEEEeCCCchhH
Confidence 89999999999999874 4455555656788999999877753
No 315
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.083 Score=40.19 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.0
Q ss_pred ccEEEEccCCcchHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
+.+++.+|.|+|||+.+-..+-.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 57899999999999998655543
No 316
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.70 E-value=0.092 Score=35.10 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=18.6
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.|..+.+.+|.|||||.++-..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998875543
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.63 E-value=0.092 Score=34.71 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=15.9
Q ss_pred ccEEEEccCCcchHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~ 24 (138)
+-+.+.+|+|||||.+.-..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L 21 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45789999999999876443
No 318
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.61 E-value=0.038 Score=38.55 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.1
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+++++.+|+|+|||.++...+.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999865544
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.60 E-value=0.089 Score=35.17 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=18.9
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.|..+.+.+|.|||||.++-..+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 466788999999999988755443
No 320
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.56 E-value=0.051 Score=39.22 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=18.6
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
..++++.+|+|+|||.++-..+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 45799999999999998865443
No 321
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.54 E-value=0.089 Score=39.72 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=16.6
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
-++|++|||+|||.++...+.
T Consensus 4 ~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHH
Confidence 468899999999988755443
No 322
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.51 E-value=0.08 Score=35.90 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=17.4
Q ss_pred cEEEEccCCcchHHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
-.+++++.|||||..+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4589999999999988555444
No 323
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.49 E-value=0.1 Score=35.13 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.6
Q ss_pred CCCccEEEEccCCcchHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~ 23 (138)
-.|+-+.+.+|+|||||...-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3577889999999999987644
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.46 E-value=0.099 Score=34.19 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=18.7
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++..+++.+|.|||||.++-..+-
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999998855443
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.39 E-value=0.11 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.8
Q ss_pred cEEEEccCCcchHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~ 23 (138)
=+++++|+|+|||.+.-.
T Consensus 3 pIVi~GPSG~GK~Tl~~~ 20 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999987643
No 326
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.36 E-value=0.086 Score=40.15 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.2
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++++++|+|+|||.++-..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999999865544
No 327
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.1 Score=39.34 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.1
Q ss_pred ccEEEEccCCcchHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
+.+++.+|.|+|||+.+-..+-+
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 57899999999999998665554
No 328
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.26 E-value=0.22 Score=33.72 Aligned_cols=38 Identities=18% Similarity=0.037 Sum_probs=28.8
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcch
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 42 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~ 42 (138)
|+=.++.+|.|+|||...+-.+.+. ...+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~-~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRF-QIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH-HHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEccc
Confidence 3445889999999997766666654 3457899999886
No 329
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.24 E-value=0.098 Score=36.19 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.4
Q ss_pred cEEEEccCCcchHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+++.+|+|+|||..+-..+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999998875443
No 330
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.19 E-value=0.23 Score=36.13 Aligned_cols=34 Identities=24% Similarity=0.110 Sum_probs=23.4
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhc-CCeEEEEc
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIK-QKSAIFIL 40 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~-~~~~l~v~ 40 (138)
++++++|+|+|||..+...+- .+... +...+++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~-~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE-LYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHH-HHhhhcCeeEEEEe
Confidence 799999999999988754433 33333 34566654
No 331
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.18 E-value=0.13 Score=34.47 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=17.1
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++.+|.|+|||..+...+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999988755443
No 332
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.14 E-value=0.11 Score=33.36 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=16.5
Q ss_pred cEEEEccCCcchHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+++.+|.|||||.++-..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999885543
No 333
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.14 E-value=0.11 Score=39.41 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.4
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+++++++|+|+|||.++-..+.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999865544
No 334
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.13 E-value=0.092 Score=36.08 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=16.1
Q ss_pred ccEEEEccCCcchHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~ 23 (138)
+++++.+|.|+|||..+..
T Consensus 59 n~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp SEEEEESCGGGCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999988843
No 335
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.12 E-value=0.4 Score=38.26 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=37.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
...+.+-||||||++..-.+.+ .++.+++++|...+..|.++++..+.
T Consensus 34 ~~~l~g~~gs~k~~~~a~~~~~----~~~~~lvv~~~~~~A~~l~~el~~~~ 81 (661)
T 2d7d_A 34 HQTLLGATGTGKTFTVSNLIKE----VNKPTLVIAHNKTLAGQLYSEFKEFF 81 (661)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH----HCCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred cEEEECcCCcHHHHHHHHHHHH----hCCCEEEEECCHHHHHHHHHHHHHHc
Confidence 4578899999999876433322 25678999999999999999999884
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.12 E-value=0.12 Score=34.47 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=20.0
Q ss_pred CCCccEEEEccCCcchHHHHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++..+++.+|.|||||.++...+-
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567789999999999998865543
No 337
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.12 E-value=0.094 Score=40.04 Aligned_cols=42 Identities=10% Similarity=-0.074 Sum_probs=31.4
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHH
Q psy2029 7 CVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 54 (138)
Q Consensus 7 ~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~ 54 (138)
.++.++.|+|||....-. .+ ..+.++++|++++.++..+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~~~-----~~-~~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSR-----VN-FEEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEECTTSCHHHHHHHH-----CC-TTTCEEEESCHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHH-----hc-cCCeEEEeCCHHHHHHHHHHhh
Confidence 479999999999865221 12 2566999999999987777764
No 338
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.11 Score=39.51 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=19.1
Q ss_pred ccEEEEccCCcchHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
+.+++.+|.|+|||+.+-..+-.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999998665544
No 339
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.00 E-value=0.078 Score=41.03 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.7
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
.|.++++.+|+|+|||..+-..
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraL 61 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRL 61 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHG
T ss_pred cCCeeEeecCchHHHHHHHHHH
Confidence 4679999999999999988544
No 340
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.99 E-value=0.13 Score=33.69 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=18.5
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+..++++++.|||||.++-..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999885543
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.90 E-value=0.11 Score=34.28 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=19.1
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++..+++.+|.|||||.++-..+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999998855443
No 342
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.90 E-value=0.25 Score=36.60 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=24.7
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
.|+-+.+.+|+|+|||...-..+-. +...++++++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~-l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR-LKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH-HHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh-ccccCCEEEEec
Confidence 4667789999999999765443322 233567777653
No 343
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.89 E-value=0.12 Score=34.84 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=16.9
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|.-+.+.+|+|||||..+-.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~ 41 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNP 41 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 466778999999999977633
No 344
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.87 E-value=0.12 Score=39.19 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=18.8
Q ss_pred ccEEEEccCCcchHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
+.+++.+|.|+|||+.+-..+-.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999998665543
No 345
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.77 E-value=0.11 Score=36.38 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.1
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.|+.+.+.+|.|||||.++-..+-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999855543
No 346
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.76 E-value=0.13 Score=34.51 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=17.3
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
+|.-+.+.+|+|||||.++-..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHH
Confidence 3556789999999999887443
No 347
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.76 E-value=0.12 Score=37.63 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=18.0
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+++++++|.|+|||..+-+.+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999988755443
No 348
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.73 E-value=0.15 Score=34.49 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=17.7
Q ss_pred CccEEEEccCCcchHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
+..+.+.+|+|||||.++-..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3567899999999998886544
No 349
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.68 E-value=0.11 Score=34.26 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=17.4
Q ss_pred CccEEEEccCCcchHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
|..+.+.+|.|||||..+-..+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 4567899999999998875543
No 350
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.67 E-value=0.084 Score=36.09 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=14.0
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.|+-+.+.+|+|||||.+.-..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46677899999999997764443
No 351
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.60 E-value=0.15 Score=36.73 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=17.8
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++++.+|.|+|||..+...+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999988755444
No 352
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.59 E-value=0.14 Score=39.03 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=19.8
Q ss_pred CccEEEEccCCcchHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
..|+++.+|+|+|||.++...+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998665544
No 353
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.56 E-value=0.24 Score=36.39 Aligned_cols=39 Identities=18% Similarity=0.058 Sum_probs=27.3
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhh--c---CCeEEEEcc
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI--K---QKSAIFILP 41 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~--~---~~~~l~v~P 41 (138)
.|+-+.+.+|.|+|||..+...+...... . +++++|+.-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 46778999999999998886665542211 2 368788753
No 354
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.42 E-value=0.098 Score=37.35 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.0
Q ss_pred CccEEEEccCCcchHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~ 24 (138)
+.-+++++|.|||||.++-..
T Consensus 33 ~~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456799999999999887544
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.40 E-value=0.34 Score=31.98 Aligned_cols=33 Identities=12% Similarity=-0.105 Sum_probs=21.1
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
-+.+.++.|||||......+ ..+..++.++-.+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~-~~l~~~g~~v~~i 38 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWV-AAAVREGWRVGTV 38 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhHhcCCeeeEE
Confidence 35789999999998764433 3344455555443
No 356
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.34 E-value=0.16 Score=33.91 Aligned_cols=21 Identities=29% Similarity=0.132 Sum_probs=17.0
Q ss_pred CccEEEEccCCcchHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~ 24 (138)
+..+.+.+|+|||||.++...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456789999999999887543
No 357
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.29 E-value=0.37 Score=33.12 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=28.8
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhh
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYIS 44 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~a 44 (138)
|.=.++++|-|+|||..++-.+.+. ..++.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~-~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT-QFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-HHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HHCCCEEEEEEeccC
Confidence 3334688999999998886666654 456889999988764
No 358
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.28 E-value=0.41 Score=32.41 Aligned_cols=38 Identities=11% Similarity=-0.090 Sum_probs=30.5
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchh
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 43 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~ 43 (138)
.++++..+.|.|||.+|.-.+++.+ ..|.+++++.-.+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEESSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeC
Confidence 4889999999999999977777644 5688999985443
No 359
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.27 E-value=0.25 Score=33.66 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=33.9
Q ss_pred hhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHH
Q psy2029 72 IQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124 (138)
Q Consensus 72 ~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~ 124 (138)
+.. .-+++..++|+|||..+.-.+...+...+.+++|+.-. .-.++..+.+.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHH
Confidence 444 56679999999999999766665555556677777543 23344444443
No 360
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.23 E-value=0.15 Score=32.96 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=15.7
Q ss_pred cEEEEccCCcchHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~ 24 (138)
.+++++|.|||||.++-..
T Consensus 4 ~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 4789999999999987443
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.23 E-value=0.37 Score=32.18 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=22.7
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
+.-+.+.+|.|||||.++....- .+...+..+.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~-~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ-TLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH-HHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHhhcCCeEEEe
Confidence 45678999999999988754332 222345555553
No 362
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.19 E-value=0.16 Score=38.73 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=18.7
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++++.+|+|+|||.++-..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999998855443
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.12 E-value=0.19 Score=33.44 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.4
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+..+++.++.|||||.++-..+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 466789999999999998865543
No 364
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.11 E-value=0.17 Score=38.99 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.7
Q ss_pred ccEEEEccCCcchHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.++++.+|+|+|||.++-..+
T Consensus 239 ~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHH
Confidence 579999999999999885543
No 365
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.10 E-value=0.14 Score=39.33 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.0
Q ss_pred ccEEEEccCCcchHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
+.+++.+|.|+|||+.+-..+-+
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
Confidence 57899999999999998655543
No 366
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.08 E-value=0.18 Score=32.35 Aligned_cols=18 Identities=11% Similarity=0.064 Sum_probs=14.7
Q ss_pred cEEEEccCCcchHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~ 23 (138)
-.++.+|+|+|||.+...
T Consensus 25 ~~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 458899999999988544
No 367
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.08 E-value=0.15 Score=35.81 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.3
Q ss_pred cEEEEccCCcchHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+++.+|+|+|||..+-..+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHH
Confidence 48999999999998875443
No 368
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.01 E-value=0.26 Score=39.78 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=18.1
Q ss_pred cEEEEccCCcchHHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
++++++|+|+|||.++-..+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999998655443
No 369
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.96 E-value=0.18 Score=35.87 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=17.8
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++.+|.|+|||+.+...+.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999975544
No 370
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.91 E-value=0.16 Score=39.51 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.|..+++.+|+|+|||..+-..+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999998854433
No 371
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.90 E-value=3.5 Score=29.95 Aligned_cols=36 Identities=19% Similarity=-0.007 Sum_probs=24.3
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
.|.-+.+.+|+|+|||...-..+.. +...++++++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~-l~~~~g~V~l~ 163 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW-LKNHGFSVVIA 163 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHhcCCEEEEE
Confidence 3567789999999999765443332 33456777665
No 372
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.81 E-value=4.2 Score=30.73 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=24.9
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
+..+.+.+|.|+|||..+...+.. +...+++++++-
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~-l~~~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY-YKGKGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH-HHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEee
Confidence 445678899999999877554443 344577777763
No 373
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.79 E-value=0.22 Score=37.81 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=25.4
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
..+++++|+|+|||..+.-.+.. +...+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~-l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY-IQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH-HHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEe
Confidence 47889999999999877554443 334577887764
No 374
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.79 E-value=0.18 Score=38.92 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=22.9
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
+.+++++|+|+|||.++...+.. + +...+.+-
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~-l---~~~~i~in 109 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE-L---GYDILEQN 109 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-T---TCEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-c---CCCEEEEe
Confidence 57899999999999988655443 2 44555553
No 375
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.74 E-value=0.31 Score=35.03 Aligned_cols=36 Identities=19% Similarity=-0.034 Sum_probs=24.9
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
+..+.+++|.|+|||..+...+.. +...+++++++-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~-~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF-YKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEEe
Confidence 456778899999999776554443 334577887763
No 376
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.71 E-value=0.18 Score=40.66 Aligned_cols=24 Identities=33% Similarity=0.225 Sum_probs=19.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
...|+++.+|+|+|||.++...+.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999865544
No 377
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.71 E-value=0.19 Score=32.74 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=18.9
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.|..+.+.++.|||||.++-..+-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467789999999999988755433
No 378
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=90.71 E-value=0.41 Score=32.96 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=22.6
Q ss_pred EEEEcc-CCcchHHHHHHHHHHHHhhcCCeEEEEcc
Q psy2029 7 CVLSIP-TSGGKTLVGEILIMKELKIKQKSAIFILP 41 (138)
Q Consensus 7 ~~~~~p-tg~GKt~~~~~~~~~~~~~~~~~~l~v~P 41 (138)
++|.+. ||+|||.++...+. .+.+++.++.+.=|
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~-~l~~~G~~V~~~KP 41 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIE-VCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHH-HHHHTTCCEEEECS
T ss_pred EEEEeCCCCCCHHHHHHHHHH-HHHHCCCeeEEecc
Confidence 444444 89999999854443 46667777777544
No 379
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.71 E-value=0.19 Score=38.24 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.1
Q ss_pred ccEEEEccCCcchHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
+.+++.+|.|+|||+.+-..+-+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 57899999999999998665554
No 380
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.68 E-value=0.18 Score=32.94 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=17.8
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+..+++.++.|||||.++...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35568999999999999885543
No 381
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.66 E-value=0.18 Score=33.56 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=17.1
Q ss_pred ccEEEEccCCcchHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~ 25 (138)
..+++++|.|||||.++-..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999885543
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.61 E-value=0.23 Score=33.32 Aligned_cols=21 Identities=33% Similarity=0.253 Sum_probs=17.0
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++.+|.|||||.++-..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998865443
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.57 E-value=0.22 Score=33.20 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=19.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++..+++.++.|||||.++...+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466789999999999999865543
No 384
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.56 E-value=0.21 Score=34.81 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=18.6
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.|..+.+.+|.|||||.++-..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999998885554
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.54 E-value=0.2 Score=34.08 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=17.7
Q ss_pred CccEEEEccCCcchHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
+..+++.+|.|||||.++-..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999885443
No 386
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.52 E-value=0.25 Score=32.14 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=15.5
Q ss_pred cEEEEccCCcchHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~ 24 (138)
-.++.+|+|||||.+....
T Consensus 28 ~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 5689999999999886543
No 387
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.50 E-value=0.18 Score=37.19 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=14.8
Q ss_pred cEEEEccCCcchHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~ 23 (138)
-.++++|+|||||.+...
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 457899999999987644
No 388
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.44 E-value=0.21 Score=32.43 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=17.3
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++++.+|.|||||.++-..+-
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999998855543
No 389
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.35 E-value=0.2 Score=33.71 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=16.6
Q ss_pred cEEEEccCCcchHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~ 25 (138)
++++.+|.|||||.++...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999885543
No 390
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=90.20 E-value=0.2 Score=36.96 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.4
Q ss_pred cEEEEccCCcchHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~ 24 (138)
-.++++|||+|||.+....
T Consensus 27 l~vi~G~NGaGKT~ileAI 45 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAV 45 (371)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4588999999999886543
No 391
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.18 E-value=0.24 Score=32.37 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=17.6
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
..++++++.|||||.++-..+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999855443
No 392
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.15 E-value=0.42 Score=37.01 Aligned_cols=36 Identities=17% Similarity=0.047 Sum_probs=24.5
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
.|.-+.+.+|+|+|||...-..+.. +...++++++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl-l~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ-FEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH-hhhcCCeEEEe
Confidence 4567789999999999765443322 33356777775
No 393
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.14 E-value=0.21 Score=35.34 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.5
Q ss_pred cEEEEccCCcchHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+++.+|.|+|||..+-..+
T Consensus 46 GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 48999999999998875443
No 394
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.08 E-value=0.24 Score=32.60 Aligned_cols=23 Identities=22% Similarity=0.059 Sum_probs=18.0
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+..+++++|.|||||.++-..+-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999998855443
No 395
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.84 E-value=0.27 Score=32.65 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=18.2
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+..+++++|.|||||.++-..+-
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999998855443
No 396
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.74 E-value=0.2 Score=34.72 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=16.5
Q ss_pred CCccEEEEccCCcchHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVG 21 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~ 21 (138)
.|+-+.+.+|.|||||...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5778899999999999765
No 397
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.72 E-value=0.59 Score=31.39 Aligned_cols=33 Identities=24% Similarity=0.140 Sum_probs=23.1
Q ss_pred EEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcc
Q psy2029 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 41 (138)
Q Consensus 8 ~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P 41 (138)
+...-+|.|||.++.-.+.. +..++.|++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~-la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQA-AKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHH-HHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEcc
Confidence 44556899999888555443 5556889988755
No 398
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.71 E-value=0.27 Score=33.16 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=19.0
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+..+++.+|.|||||.++-..+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999998855443
No 399
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.70 E-value=0.47 Score=31.39 Aligned_cols=42 Identities=26% Similarity=0.218 Sum_probs=26.8
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHH
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHE 118 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q 118 (138)
.++++.-|+|+|||..+.. +...+...+.+++++ ....+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~~~~~~~~~~~-~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANELAKRNVSSLIV-YVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHHHTTTCCEEEE-EHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHcCCeEEEE-EhHHHHHH
Confidence 5788999999999998844 444454445555554 33344433
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.68 E-value=0.26 Score=31.66 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=17.5
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
..+++.++.|||||.++-..+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999998855443
No 401
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.62 E-value=0.28 Score=33.14 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=18.4
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+..+++.+|.|||||.++-..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998865443
No 402
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.59 E-value=0.24 Score=38.99 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.7
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.|+++++.+|+|+|||..+-..+-
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhc
Confidence 578999999999999998855433
No 403
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.49 E-value=0.22 Score=40.65 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.4
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
.++++++++|+|+|||.++-..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHH
Confidence 4578999999999999887544
No 404
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.43 E-value=0.27 Score=31.63 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.1
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++.+.++.|||||.++-..+-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999865543
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.43 E-value=0.71 Score=30.91 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=23.4
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHh-hcCCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELK-IKQKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~-~~~~~~l~v 39 (138)
.|..+++.++.|||||..+-...-. +. +.+...+++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~-l~~~~g~~~~~~ 60 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ-LVRDRRVHAYRL 60 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH-HHHHHCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-hccccCCcEEEE
Confidence 4667889999999999887554332 22 234344554
No 406
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.37 E-value=1.3 Score=31.91 Aligned_cols=83 Identities=11% Similarity=-0.054 Sum_probs=47.6
Q ss_pred cchhhhHHHHHHHHHHH-H----HhhhhhhhhHHHhhhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccch
Q psy2029 40 LPYISLVHEKYQSLAKA-A----EEFKFYLEGKCLEMIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 113 (138)
Q Consensus 40 ~P~~aL~~q~~~~l~~~-~----~~~~~~~Q~~~~~~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~ 113 (138)
.+...+..+.++++++. + ...+++-=......+.. .-+++..++|.|||..+.-.+...+. ++.+++|+.--
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE- 105 (315)
T 3bh0_A 28 GSIDEALVTVYEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLE- 105 (315)
T ss_dssp CCCHHHHHHHHHHHHTCSSSCCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESS-
T ss_pred ccHHHHHHHHHHHHHhccCCCCCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECC-
Confidence 46666666777766653 1 11222222222233444 56679999999999988766655443 35678887643
Q ss_pred hHHHHHHHHHH
Q psy2029 114 SLVHEKYQSLA 124 (138)
Q Consensus 114 ~l~~q~~~~~~ 124 (138)
.-..|....+.
T Consensus 106 ~s~~~l~~R~~ 116 (315)
T 3bh0_A 106 MGKKENIKRLI 116 (315)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33344444443
No 407
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.30 E-value=0.25 Score=38.01 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=17.9
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+.+++.+|+|+|||..+-..+-
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998855443
No 408
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.28 E-value=0.34 Score=34.22 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.4
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++++++|.|+|||..+...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 589999999999988855544
No 409
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.24 E-value=0.34 Score=34.35 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=17.5
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++++++|.|+|||..+...+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 689999999999988865544
No 410
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=89.20 E-value=0.56 Score=36.44 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=19.8
Q ss_pred CCccEEEEccCCcchHHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
++.++++.++||||||...-..+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999887555544
No 411
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.20 E-value=0.31 Score=39.30 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=19.7
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+.++++++|+|+|||.++...+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999998865544
No 412
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.20 E-value=0.28 Score=32.82 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=19.7
Q ss_pred CCccEEEEccCCcchHHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.|.-+++.+|.|+|||..+...+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 577889999999999988765554
No 413
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.17 E-value=0.41 Score=31.13 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=27.3
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHH-hCCCeEEEEccchhHHHHHH
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELK-IKQKSAIFILPYISLVHEKY 120 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~-~~~~~~~~i~P~~~l~~q~~ 120 (138)
+.+.+.-|+|+|||..+...+ ..+. ..+.+++| .+...+..+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~-~~~~~~~g~~~~~-~~~~~~~~~~~ 83 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATL-KAIYEKKGIRGYF-FDTKDLIFRLK 83 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHH-HHHHHHSCCCCCE-EEHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH-HHHHHHcCCeEEE-EEHHHHHHHHH
Confidence 677899999999998885443 3443 33444444 34455554433
No 414
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.12 E-value=0.29 Score=32.49 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.9
Q ss_pred cEEEEccCCcchHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~ 24 (138)
.+.+.+|.|||||.++-..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5789999999999987554
No 415
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.12 E-value=0.29 Score=34.20 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=23.2
Q ss_pred CCccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
.+..++++++.|||||..+-..+-. +.+.+...+++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~-L~~~g~~~i~~ 38 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI-LSKNNIDVIVL 38 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH-HHhCCCEEEEE
Confidence 4457899999999999988554332 33334444433
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.05 E-value=0.29 Score=31.90 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=23.1
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchh
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 43 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~ 43 (138)
.+++.+|.|||||.++...+-. +.+.+..+.++ |.-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~-l~~~g~~~~~~-~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI-LDNQGINNKII-NYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH-HHTTTCCEEEE-EHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHhcCceEEEE-ECC
Confidence 4789999999999988554432 33334444444 543
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.04 E-value=0.32 Score=33.21 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=18.6
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+.++++.++.|||||..+...+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998855543
No 418
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.01 E-value=0.29 Score=31.88 Aligned_cols=20 Identities=10% Similarity=-0.007 Sum_probs=16.6
Q ss_pred cEEEEccCCcchHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+++.++.|||||.++-..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999885543
No 419
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.95 E-value=0.31 Score=32.12 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=16.0
Q ss_pred cEEEEccCCcchHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~ 24 (138)
.+.+.++.|||||.++-..
T Consensus 10 ~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999988554
No 420
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.94 E-value=0.38 Score=31.19 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=17.0
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+-+.+.+|.|+|||...-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~ 52 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRG 52 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 566778999999999977643
No 421
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.88 E-value=0.28 Score=35.52 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=16.9
Q ss_pred EEEEccCCcchHHHHHHHHH
Q psy2029 7 CVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 7 ~~~~~ptg~GKt~~~~~~~~ 26 (138)
+++++|.|+|||..+...+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999988865544
No 422
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.82 E-value=0.22 Score=34.47 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=17.0
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.|+-+.+.+|.|||||...-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57788999999999997753
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.81 E-value=0.34 Score=32.59 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.2
Q ss_pred CccEEEEccCCcchHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~ 24 (138)
+..+.+.++.|||||.++-..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 456789999999999987554
No 424
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.74 E-value=0.34 Score=31.01 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=16.9
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++.++.|||||.++-..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998855433
No 425
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.68 E-value=0.35 Score=33.28 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=17.6
Q ss_pred CccEEEEccCCcchHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
+..+.+.+|.|||||..+-..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998875443
No 426
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.62 E-value=0.33 Score=33.56 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=18.0
Q ss_pred CccEEEEccCCcchHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
+..+++.+|.|||||.++...+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999885554
No 427
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.62 E-value=0.32 Score=35.26 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=17.1
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++++|.|+|||..+...+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999988855543
No 428
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.61 E-value=0.27 Score=39.63 Aligned_cols=21 Identities=33% Similarity=0.264 Sum_probs=17.7
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++++++|+|+|||.++-..+.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999865444
No 429
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=88.53 E-value=0.6 Score=39.57 Aligned_cols=36 Identities=31% Similarity=0.264 Sum_probs=27.0
Q ss_pred EEEccCCcchHHHHHHHHHHHHhh--cCCeEEEEcchh
Q psy2029 8 VLSIPTSGGKTLVGEILIMKELKI--KQKSAIFILPYI 43 (138)
Q Consensus 8 ~~~~ptg~GKt~~~~~~~~~~~~~--~~~~~l~v~P~~ 43 (138)
+|.|..|||||.+...-+...+.+ .+.++++++|..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc
Confidence 789999999999987766554433 246899998854
No 430
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.44 E-value=0.81 Score=34.74 Aligned_cols=41 Identities=10% Similarity=-0.112 Sum_probs=29.9
Q ss_pred hhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccc
Q psy2029 71 MIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPY 112 (138)
Q Consensus 71 ~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~ 112 (138)
.+.. .-+++..++|.|||..++-.+...+.. +.+++|+.--
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECC
Confidence 3444 556799999999999997766665544 6788887653
No 431
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.43 E-value=0.37 Score=33.23 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=17.3
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
.|.-+-+.+|.|||||.++-..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3556779999999999887543
No 432
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.40 E-value=0.27 Score=38.81 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=16.6
Q ss_pred cEEEEccCCcchHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~ 24 (138)
++++.+|+|+|||..+-..
T Consensus 329 ~vLL~GppGtGKT~LAr~l 347 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFI 347 (595)
T ss_dssp CEEEEESSCCTHHHHHHSS
T ss_pred ceEEECCCchHHHHHHHHH
Confidence 8999999999999987443
No 433
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.39 E-value=0.29 Score=35.37 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.1
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++++++|.|+|||..+...+-
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999988755443
No 434
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.35 E-value=0.36 Score=31.84 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=14.7
Q ss_pred cEEEEccCCcchHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~ 23 (138)
.+.+.+|.|+|||...-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~ 19 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 568899999999977633
No 435
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.33 E-value=0.62 Score=33.47 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=24.6
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHH-hCCCeEEEE
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELK-IKQKSAIFI 109 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~-~~~~~~~~i 109 (138)
.++++.-|+|+|||..+... ...+. ..+.+++|+
T Consensus 153 ~~lll~G~~GtGKT~La~ai-a~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAM-AHELSEKKGVSTTLL 187 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHH-HHHHHHHSCCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHHHHhcCCcEEEE
Confidence 67889999999999988544 44555 555666554
No 436
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=88.22 E-value=1.9 Score=33.81 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=38.3
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhh-cCCeEEEEcchhhhHHHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKAA 57 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~-~~~~~l~v~P~~aL~~q~~~~l~~~~ 57 (138)
+.+++..|-++|||.+....++..+.. .+.+++++.|+.....+.++.+....
T Consensus 179 r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 457899999999997765544443443 45589999999987777776665553
No 437
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.18 E-value=0.27 Score=34.16 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=17.6
Q ss_pred CccEEEEccCCcchHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
+..+++++|.|||||.++-..+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567999999999999875443
No 438
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.16 E-value=0.38 Score=32.46 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=18.4
Q ss_pred CccEEEEccCCcchHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
+..+++.+|.|||||..+-..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998855543
No 439
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.15 E-value=0.38 Score=31.87 Aligned_cols=20 Identities=20% Similarity=0.018 Sum_probs=16.2
Q ss_pred ccEEEEccCCcchHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~ 24 (138)
..+++.+|.|||||.++-..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35789999999999987444
No 440
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.13 E-value=0.29 Score=34.80 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=17.0
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.|+-+.+.+|.|||||...-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57778999999999998753
No 441
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.12 E-value=0.28 Score=33.36 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=17.6
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
.|+.+.+.+|.|||||...-+.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l 42 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAK 42 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4677889999999999776443
No 442
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.11 E-value=0.41 Score=31.97 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=16.1
Q ss_pred CccEEEEccCCcchHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~ 23 (138)
|+.+.+.+|.|+|||...-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 46688999999999976544
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.09 E-value=0.35 Score=32.47 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=17.0
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
++++.+|.|||||.++-..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998855443
No 444
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.08 E-value=0.82 Score=30.25 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=25.1
Q ss_pred eEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccch
Q psy2029 77 CVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 113 (138)
Q Consensus 77 ~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~ 113 (138)
.+++.|.|+|||..++-. +.++...+.+++++.|..
T Consensus 6 ~vi~G~~gsGKTT~ll~~-~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSF-VEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp EEEEESTTSSHHHHHHHH-HHHHHHTTCEEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHH-HHHHHHCCCeEEEEeecc
Confidence 457888999999887443 444444567888887763
No 445
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.00 E-value=0.4 Score=32.27 Aligned_cols=18 Identities=11% Similarity=0.064 Sum_probs=14.7
Q ss_pred cEEEEccCCcchHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~ 23 (138)
-.++.+|+|+|||.+...
T Consensus 25 ~~~I~G~NgsGKStil~a 42 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDA 42 (203)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 458899999999987644
No 446
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.93 E-value=0.31 Score=33.42 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=16.7
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.|+-+.+.+|.|||||...-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~ 48 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLY 48 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57778899999999997753
No 447
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=87.92 E-value=0.24 Score=45.49 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.2
Q ss_pred CCccEEEEccCCcchHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVG 21 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~ 21 (138)
.++++++++|+|+|||..+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4689999999999999887
No 448
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.91 E-value=0.4 Score=31.55 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=16.7
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+++.++.|||||..+-..+-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 468999999999998755433
No 449
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=87.85 E-value=1.4 Score=33.86 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=38.1
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
|....+.+-|||||+++..-.+. ..++.+++++|......+.++++..+
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~----~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAE----RHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHH----HSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCeEEEeCCCchHHHHHHHHHHH----HhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 45678899999999987533222 24667899999999999999998876
No 450
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=87.81 E-value=0.39 Score=31.95 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.7
Q ss_pred cEEEEccCCcchHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~ 24 (138)
.+.+.+|.|||||.++-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999987554
No 451
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.81 E-value=0.38 Score=33.94 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=17.9
Q ss_pred CCCccEEEEccCCcchHHHHHH
Q psy2029 2 VQNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 2 ~~~~~~~~~~ptg~GKt~~~~~ 23 (138)
-.|+-+.+.+|.|||||...-+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~ 65 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSAT 65 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3577889999999999987643
No 452
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.79 E-value=0.29 Score=31.74 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=13.5
Q ss_pred CCccEEEEccCCcchHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~ 24 (138)
++..+++.++.|||||.++-..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp -CCEEEEECCC----CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3556889999999999988554
No 453
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.69 E-value=0.8 Score=33.06 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=25.1
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
-+++++..|.|||.++...+.. +.+.+.|++++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~-lA~~G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALW-MARSGKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHH-HHHCCCcEEEEe
Confidence 4578899999999888665554 445677887764
No 454
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=87.68 E-value=0.39 Score=34.91 Aligned_cols=18 Identities=11% Similarity=0.064 Sum_probs=14.9
Q ss_pred cEEEEccCCcchHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~ 23 (138)
-.++++|+|+|||.+...
T Consensus 25 ~~~i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDA 42 (339)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 347899999999988764
No 455
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.66 E-value=0.5 Score=33.38 Aligned_cols=22 Identities=23% Similarity=0.102 Sum_probs=17.8
Q ss_pred cEEEEccCCcchHHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
++++++|.|+|||..+...+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999888655443
No 456
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.63 E-value=1.4 Score=33.40 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=29.1
Q ss_pred hhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEcc
Q psy2029 72 IQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 111 (138)
Q Consensus 72 ~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P 111 (138)
+.. .-+++..++|.|||..+.-.+.......+.+++|+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 444 5567999999999999977666554444667888764
No 457
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.62 E-value=0.74 Score=31.69 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=26.2
Q ss_pred ceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccch
Q psy2029 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYI 113 (138)
Q Consensus 76 ~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~ 113 (138)
-.+++-|.|+|||..++ ..+.++...+.+++++-|..
T Consensus 14 i~litG~mGsGKTT~ll-~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELI-RRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp EEEEECSTTSCHHHHHH-HHHHHHHHTTCCEEEEEECC
T ss_pred EEEEECCCCCcHHHHHH-HHHHHHHhcCCEEEEEEecc
Confidence 34577888999998874 44455555677888886654
No 458
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.61 E-value=0.3 Score=33.85 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.4
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+.+.+.+|.|||||...-+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSL 47 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577789999999999987643
No 459
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.60 E-value=0.98 Score=29.74 Aligned_cols=30 Identities=20% Similarity=0.079 Sum_probs=18.9
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeE
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSA 36 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~ 36 (138)
-+.+++|.|+|||......+- .+...+.++
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~-~l~~~g~~v 37 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIP-ALCARGIRP 37 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-HHHHTTCCE
T ss_pred EEEEEeCCCCCHHHHHHHHHH-hccccCCce
Confidence 368899999999977544332 233344433
No 460
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.55 E-value=0.33 Score=34.09 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=17.5
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+.+.+.+|.|||||...-+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~ 65 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKL 65 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577889999999999987633
No 461
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.53 E-value=1.9 Score=32.90 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=34.4
Q ss_pred ceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEc--cchhHHHHHHHHHHHHhhhcCcee
Q psy2029 76 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL--PYISLVHEKYQSLAKAAEEFKFYL 134 (138)
Q Consensus 76 ~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~--P~~~l~~q~~~~~~~~~~~~~~~v 134 (138)
-++++.|+|+|||..+.-.+. .+...+.+++++. |.++-+ +++++.+....|+.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQKRGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHTTTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEE
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHHCCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcE
Confidence 446888999999998865553 3445566766665 555544 344555555555543
No 462
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.50 E-value=0.55 Score=35.83 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=32.6
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHH
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~~~ 125 (138)
+-.++..+.|+|||.... +.+ . ..+.++++|+++++++..+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~-~-~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRV-N-FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHC-C-TTTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHHH----HHh-c-cCCeEEEeCCHHHHHHHHHHhhh
Confidence 344689999999996552 211 1 25679999999999888777753
No 463
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.42 E-value=0.37 Score=33.57 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=17.4
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+-+.+.+|.|||||...-+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577889999999999987633
No 464
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.42 E-value=0.87 Score=35.61 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=26.1
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
+-+++++..|.|||.++...+.. +.+.|.|++++-
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~-lA~~G~rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIR-LAEQGKRVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHH-HHHCCCcEEEEE
Confidence 45688999999999888665554 445678888853
No 465
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=87.36 E-value=2.3 Score=31.71 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=37.8
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhh-cCCeEEEEcchhhhHHHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKI-KQKSAIFILPYISLVHEKYQSLAKA 56 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~-~~~~~l~v~P~~aL~~q~~~~l~~~ 56 (138)
+.+++..|-+.|||.+....++..+.. .+.+++++.|+..-..+.++.+..+
T Consensus 179 R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 347899999999998776655543333 4568999999988776666665554
No 466
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.35 E-value=0.25 Score=35.69 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.2
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.|+.+.+.+|+|||||...-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHH
Confidence 57788999999999998753
No 467
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=87.34 E-value=0.78 Score=31.01 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=22.9
Q ss_pred EEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 8 ~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
+.+...|.|||.++...+.. +..++.+++++-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~-la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVA-LGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHH-HHhcCCeEEEEe
Confidence 45667899999888665553 445678888874
No 468
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.32 E-value=0.27 Score=32.36 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=15.5
Q ss_pred cEEEEccCCcchHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+.+.+|+|||||......+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999998765443
No 469
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.27 E-value=0.44 Score=31.05 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=16.7
Q ss_pred cEEEEccCCcchHHHHHHHHH
Q psy2029 6 NCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.+.+.++.|||||.++...+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999998855543
No 470
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.25 E-value=0.88 Score=37.32 Aligned_cols=24 Identities=33% Similarity=0.210 Sum_probs=19.7
Q ss_pred CccEEEEccCCcchHHHHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMK 27 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~ 27 (138)
..++++++|.|+|||.++...+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999988666554
No 471
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.20 E-value=0.36 Score=33.81 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=17.0
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.|+.+.+.+|.|||||...-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLIN 51 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57778899999999998753
No 472
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.18 E-value=0.49 Score=32.96 Aligned_cols=21 Identities=29% Similarity=0.484 Sum_probs=17.6
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+-+.+.+|.|||||...-+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~ 48 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKI 48 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577788999999999987644
No 473
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.18 E-value=0.39 Score=32.99 Aligned_cols=20 Identities=20% Similarity=0.116 Sum_probs=16.9
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.|+-+.+.+|.|||||...-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57778899999999997753
No 474
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.17 E-value=0.31 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.1
Q ss_pred ccEEEEccCCcchHHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIM 26 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~ 26 (138)
.++++.+|+|+|||.++-..+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999998855444
No 475
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=87.16 E-value=0.41 Score=37.03 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.2
Q ss_pred ccEEEEccCCcchHHHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~ 25 (138)
+.+++.+|+|+|||..+-..+
T Consensus 65 ~GvLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999885543
No 476
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.03 E-value=0.45 Score=34.38 Aligned_cols=21 Identities=10% Similarity=-0.034 Sum_probs=16.7
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|.-+-+.+|+|||||..+-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHH
Confidence 355678999999999987744
No 477
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.01 E-value=0.94 Score=30.64 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=30.6
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHH
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSL 123 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P~~~l~~q~~~~~ 123 (138)
..+++..|+|+|||..+.-.+...+ ..+.+++|+.... ...+..+.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~e~-~~~~~~~~~ 70 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEE-HPVQVRQNM 70 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEESSS-CHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccC-CHHHHHHHH
Confidence 5667999999999999865554433 3467788876543 233443333
No 478
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=86.98 E-value=0.93 Score=32.85 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=24.5
Q ss_pred cEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEE
Q psy2029 6 NCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFI 39 (138)
Q Consensus 6 ~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v 39 (138)
-+++++..|.|||.++...+.. +.+.|.|++++
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~-lA~~G~rVllv 53 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQ-MSKVRSSVLLI 53 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH-HHTSSSCEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHH-HHHCCCeEEEE
Confidence 3577899999999888655554 44567788875
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.98 E-value=0.53 Score=35.03 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.5
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.|+.+.+.+|.|+|||..+-..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46788999999999998775444
No 480
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.97 E-value=0.42 Score=32.64 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.4
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+-+.+.+|.|||||...-+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~ 54 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKT 54 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577888999999999987643
No 481
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.97 E-value=0.88 Score=30.47 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=19.2
Q ss_pred cceEEEeecCCCchHhHHHHHHHHHH
Q psy2029 75 KNCVLSIPTSGGKTLVGEILIMKELK 100 (138)
Q Consensus 75 ~~~ii~~ptg~GKt~~~~~~~l~~~~ 100 (138)
.++++.-|+|+|||..+...+ +.+.
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~-~~~~ 77 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAAC-ARAN 77 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHH-HHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH-HHHH
Confidence 788999999999999885443 3443
No 482
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.97 E-value=0.38 Score=33.32 Aligned_cols=21 Identities=19% Similarity=0.098 Sum_probs=17.3
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+-+.+.+|.|||||...-+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~ 51 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSA 51 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577788999999999987533
No 483
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.92 E-value=0.41 Score=33.79 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=17.0
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.|+-+.+.+|.|||||...-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 57788999999999998753
No 484
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=86.88 E-value=1 Score=31.06 Aligned_cols=32 Identities=22% Similarity=0.082 Sum_probs=23.2
Q ss_pred EEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 8 VLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 8 ~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
+.+...|.|||.++...+.. +..++.+++++-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~-la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVA-LAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHH-HHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHH-HHhCCCcEEEEE
Confidence 55778899999888665543 445677888874
No 485
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.77 E-value=0.49 Score=33.85 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.2
Q ss_pred ccEEEEccCCcchHHHHHH
Q psy2029 5 KNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~ 23 (138)
.-+.+.+|+|||||.++-.
T Consensus 32 ~ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3467899999999988743
No 486
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.75 E-value=0.49 Score=30.99 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=20.4
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhhcCCeEEE
Q psy2029 7 CVLSIPTSGGKTLVGEILIMKELKIKQKSAIF 38 (138)
Q Consensus 7 ~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~ 38 (138)
+.+.+|.|||||.++....- .+.+.+..++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~-~l~~~g~~v~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQ-YLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH-HHHHCCC-EEE
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHCCCeEEE
Confidence 67899999999998865433 23334555544
No 487
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.73 E-value=0.88 Score=35.24 Aligned_cols=36 Identities=17% Similarity=0.042 Sum_probs=25.6
Q ss_pred ccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcc
Q psy2029 5 KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 41 (138)
Q Consensus 5 ~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P 41 (138)
..+.+++++|+|||..+.-.+.. +..++.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~-l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYY-YQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH-HHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHhCCCeEEEEec
Confidence 36788999999999887555543 4445777777653
No 488
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=86.71 E-value=0.28 Score=36.34 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=14.9
Q ss_pred CCCccE--EEEccCCcchHHH
Q psy2029 2 VQNKNC--VLSIPTSGGKTLV 20 (138)
Q Consensus 2 ~~~~~~--~~~~ptg~GKt~~ 20 (138)
++|.|+ +..++||||||..
T Consensus 101 l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 101 LDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HTTCCEEEEEEESTTSSHHHH
T ss_pred hCCCCEEEEEeCCCCCCccEE
Confidence 456655 7789999999975
No 489
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=86.64 E-value=0.33 Score=35.80 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=15.7
Q ss_pred CCCccE--EEEccCCcchHHHH
Q psy2029 2 VQNKNC--VLSIPTSGGKTLVG 21 (138)
Q Consensus 2 ~~~~~~--~~~~ptg~GKt~~~ 21 (138)
++|.|+ +..++||||||..-
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHH
T ss_pred HCCcceeEEEeCCCCCCCceEe
Confidence 567665 66899999999764
No 490
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.60 E-value=0.4 Score=33.70 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=16.8
Q ss_pred CCccEEEEccCCcchHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGE 22 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~ 22 (138)
.|+-+.+.+|.|||||...-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57778899999999997753
No 491
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.53 E-value=0.41 Score=33.72 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.3
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+-+.+.+|.|||||...-+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~ 52 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQI 52 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 577788999999999987533
No 492
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=86.36 E-value=0.34 Score=35.75 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=15.4
Q ss_pred CCCccE--EEEccCCcchHHHH
Q psy2029 2 VQNKNC--VLSIPTSGGKTLVG 21 (138)
Q Consensus 2 ~~~~~~--~~~~ptg~GKt~~~ 21 (138)
++|.|+ +..++||||||..-
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHH
T ss_pred cCCceeEEEEECCCCCCCcEec
Confidence 466665 67899999999753
No 493
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.30 E-value=0.43 Score=33.51 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=17.4
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+-+.+.+|.|||||...-+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~ 60 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRI 60 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 577889999999999987533
No 494
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.26 E-value=3.8 Score=29.95 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=29.0
Q ss_pred hhhc-cceEEEeecCCCchHhHHHHHHHHHHhCCCeEEEEcc
Q psy2029 71 MIQN-KNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILP 111 (138)
Q Consensus 71 ~~~~-~~~ii~~ptg~GKt~~~~~~~l~~~~~~~~~~~~i~P 111 (138)
.+.. .-+++..++|.|||..+.-.+...+. .+.+++|+..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 3444 55679999999999998766655444 5677888765
No 495
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.15 E-value=0.53 Score=33.76 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=16.6
Q ss_pred CccEEEEccCCcchHHHHHHH
Q psy2029 4 NKNCVLSIPTSGGKTLVGEIL 24 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~ 24 (138)
|.-+-+.+|.|||||.++-..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 456788999999999887443
No 496
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.14 E-value=0.47 Score=33.53 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=17.3
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+.+.+.+|.|||||...-+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAAL 64 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577789999999999977533
No 497
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=85.98 E-value=1.1 Score=32.76 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=24.2
Q ss_pred EEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEc
Q psy2029 7 CVLSIPTSGGKTLVGEILIMKELKIKQKSAIFIL 40 (138)
Q Consensus 7 ~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~ 40 (138)
+++++.-|.|||.++...+.. +.+.+.|++++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~-lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVY-LAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHH-HHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHH-HHHCCCeEEEEe
Confidence 577889999999888555554 445677887764
No 498
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=85.96 E-value=1.2 Score=31.00 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=30.0
Q ss_pred CccEEEEccCCcchHHHHHHHHHHHHhhcCCeEEEEcchhh
Q psy2029 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYIS 44 (138)
Q Consensus 4 ~~~~~~~~ptg~GKt~~~~~~~~~~~~~~~~~~l~v~P~~a 44 (138)
|.=.++++|-|+|||..++-.+.+. ...+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~-~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF-QIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-HTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEeecCC
Confidence 3444778888999998876666654 446889999888764
No 499
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.92 E-value=0.46 Score=33.51 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.4
Q ss_pred CCccEEEEccCCcchHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEI 23 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~ 23 (138)
.|+-+.+.+|.|||||...-+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~ 69 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRC 69 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHHHH
Confidence 577788999999999987643
No 500
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.91 E-value=0.63 Score=31.79 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=18.4
Q ss_pred CCccEEEEccCCcchHHHHHHHH
Q psy2029 3 QNKNCVLSIPTSGGKTLVGEILI 25 (138)
Q Consensus 3 ~~~~~~~~~ptg~GKt~~~~~~~ 25 (138)
.+..+.+.+|.|||||.++-..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999885544
Done!