RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2029
(138 letters)
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 73.2 bits (180), Expect = 3e-16
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 67 KCLEMI--QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLA 124
+ ++ + +L+ PT GKTL+ E+ I+ L AI++ P +L +EKY +
Sbjct: 37 EAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK 96
Query: 125 KAAE 128
Sbjct: 97 DWEL 100
Score = 72.1 bits (177), Expect = 5e-16
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 58
+ +L+ PT GKTL+ E+ I+ L AI++ P +L +EKY +
Sbjct: 45 EGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL 100
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 61.0 bits (148), Expect = 5e-12
Identities = 20/60 (33%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 67 KCLEMI-QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ +E + KN +L++PT+ GKTL+ E+ +++E K +++++P +L EKY+S K
Sbjct: 32 EAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGK-SLYVVPLRALAGEKYESFKK 90
Score = 60.6 bits (147), Expect = 7e-12
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN +L++PT+ GKTL+ E+ +++E K +++++P +L EKY+S K
Sbjct: 37 VFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGK-SLYVVPLRALAGEKYESFKK 90
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold,
ATP-binding, hydrolase, nucleotide- binding; 2.00A
{Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 60.6 bits (147), Expect = 6e-12
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN ++SIPT+ GKTL+ EI ++ + + A++I+P +L EK+Q
Sbjct: 38 EGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQD 90
Score = 60.6 bits (147), Expect = 6e-12
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ KN ++SIPT+ GKTL+ EI ++ + + A++I+P +L EK+Q
Sbjct: 38 EGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQD 90
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 46.0 bits (108), Expect = 9e-07
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 10 SIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYL----E 65
S + +TL E L + + + + P A + F L +
Sbjct: 131 SKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQD 190
Query: 66 GKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ + ++ ++S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 191 TAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYRELLA 249
Score = 43.3 bits (101), Expect = 7e-06
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ ++ ++S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 198 RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYRELLA 249
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 45.2 bits (106), Expect = 2e-06
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Query: 10 SIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEG--- 66
S + +TL E L + + + + P A + F L+
Sbjct: 33 SKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQD 92
Query: 67 KCLEMIQNKNCVL-SIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+ I VL S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 93 TAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYRELLA 151
Score = 42.9 bits (100), Expect = 9e-06
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ ++ ++S TS GKT+V E I + LK KQ+ I+ P +L ++KY+ L
Sbjct: 100 RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQR-VIYTSPIKALSNQKYRELLA 151
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 41.7 bits (98), Expect = 2e-05
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
+ +K + +PT GKT V + + EL + ++P ++L
Sbjct: 104 RWLVDKRGCIVLPTGSGKTHVA-MAAINELS---TPTLIVVPTLALAE 147
Score = 41.0 bits (96), Expect = 4e-05
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 47
+ +K + +PT GKT V + + EL + ++P ++L
Sbjct: 105 WLVDKRGCIVLPTGSGKTHVA-MAAINELS---TPTLIVVPTLALAE 147
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 41.8 bits (97), Expect = 3e-05
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 50 YQSLAKAAEEFKFYL----EGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS 105
+ + A + F L + + Q + ++ TS GKT+V E I + K
Sbjct: 26 DELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTK- 84
Query: 106 AIFILPYISLVHEKYQSLAK 125
I+ P +L ++K++ +
Sbjct: 85 TIYTSPIKALSNQKFRDFKE 104
Score = 37.9 bits (87), Expect = 6e-04
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+ Q + ++ TS GKT+V E I + K I+ P +L ++K++ +
Sbjct: 51 LEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTK-TIYTSPIKALSNQKFRDFKE 104
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 39.7 bits (93), Expect = 9e-05
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
+ +K + +PT GKT V + + EL + ++P ++L
Sbjct: 104 RWLVDKRGCIVLPTGSGKTHVA-MAAINELS---TPTLIVVPTLALAE 147
Score = 38.5 bits (90), Expect = 2e-04
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 47
+ +K + +PT GKT V + + EL + ++P ++L
Sbjct: 105 WLVDKRGCIVLPTGSGKTHVA-MAAINELS---TPTLIVVPTLALAE 147
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 39.0 bits (91), Expect = 2e-04
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAK 125
++ KN ++ +PT GKT V + L K+K+ I ++ + LV + ++ +
Sbjct: 46 LEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104
Score = 38.3 bits (89), Expect = 3e-04
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKS-----AIFILPYISLVHEKYQSLAK 55
++ KN ++ +PT GKT V + L K+K+ I ++ + LV + ++ +
Sbjct: 46 LEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.002
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 27/128 (21%)
Query: 7 CVLSIPTSGGKTLVGEIL------IMKELKI--KQKSAIFILPYISLVHEKY---QSLAK 55
+LS + V E+L +M +K +Q S + + YI Y Q AK
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQVFAK 128
Query: 56 AA---EEFKFYLEGKCLEMIQNKNCVLSIPTSG----GKT-LVGEILIMKELKIKQKSAI 107
+ L LE+ KN ++ G GKT + ++ + +++ K I
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 108 FILPYISL 115
F +++L
Sbjct: 185 F---WLNL 189
Score = 33.7 bits (76), Expect = 0.013
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 40 LPYISLVHEKYQSLAKAAEEF-KFYLEGKCLEMIQNKNCVLSIPTSGGKTLVGEILIMKE 98
+ + H K + F +L+ ++ K S + +++ + +K
Sbjct: 477 IGH----HLKNIEHPERMTLFRMVFLD---FRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 99 LKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
K PYI KY+ L A +F
Sbjct: 530 YK----------PYICDNDPKYERLVNAILDF 551
Score = 29.1 bits (64), Expect = 0.59
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 46/138 (33%)
Query: 16 GKT-LVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKFYLEGKC------ 68
GKT + ++ + +++ K IF +++L C
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIF---WLNL--------------------KNCNSPETV 198
Query: 69 LEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ-SL---- 123
LEM+Q + +K++ S L + L + Y+ L
Sbjct: 199 LEMLQKLLYQID------PNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLL 251
Query: 124 ----AKAAEEFKFYLEVL 137
AKA F ++L
Sbjct: 252 NVQNAKAWNAFNLSCKIL 269
Score = 27.9 bits (61), Expect = 1.2
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLE-----GKCLEMIQNKNCVLSIPTSG 85
PYI KY+ L A +F +E K ++++ L
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR---IALMAEDEA 578
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 33.2 bits (75), Expect = 0.016
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 69 LEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 117
+ NC++ +PT GKTL+ ++ L + + P LV
Sbjct: 18 YAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL 66
Score = 32.5 bits (73), Expect = 0.037
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 4 NKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVH 47
NC++ +PT GKTL+ ++ L + + P LV
Sbjct: 23 ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL 66
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 32.2 bits (72), Expect = 0.040
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELK----IKQKSAIFILPYISLVHEKYQSLAKAA 127
+ KN ++ PT GKT V ++ LK ++ +F I + ++ ++
Sbjct: 17 KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYF 76
Query: 128 EEFKFYLEVL 137
E + + +
Sbjct: 77 ERLGYNIASI 86
Score = 31.8 bits (71), Expect = 0.067
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELK----IKQKSAIFILPYISLVHEKYQSLAK 55
+ KN ++ PT GKT V ++ LK ++ +F I + ++ ++
Sbjct: 18 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSR 74
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 31.9 bits (71), Expect = 0.052
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKI----KQKSAIFILPYISLVHEKYQSLAK 125
++ KN ++ PT GKT V ++ LK ++ +F I + + +K
Sbjct: 26 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83
Score = 31.5 bits (70), Expect = 0.078
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI----KQKSAIFILPYISLVHEKYQSLAK 55
+ KN ++ PT GKT V ++ LK ++ +F I + + +K
Sbjct: 27 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83
>1k5n_A Major histocompatibility complex molecule HLA-B*2; MHC(major
histocompatibility complex), HLA(human leukocyte A
immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2
d.19.1.1 PDB: 1jgd_A 1of2_A 1uxw_A 1w0w_A 3b3i_A* 3bp7_A
3czf_A* 3hcv_A* 3d18_A* 2bss_A 2bsr_A 2a83_A 1jge_A
1hsa_A 1uxs_A 1w0v_A 1ogt_A 2bst_A 3b6s_A* 3bp4_A ...
Length = 276
Score = 31.5 bits (72), Expect = 0.056
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A+ AE+ + YLEG+C+E ++
Sbjct: 150 ARVAEQLRAYLEGECVEWLR 169
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.066
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 35/133 (26%)
Query: 18 TLVGEILIMKELKIKQKSAIFILPYISLVH-------EKYQS-LAKAAEE--FKFYLEGK 67
L ++L + + + + I YI+ +K S L +A E +
Sbjct: 103 ALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA--- 158
Query: 68 CLEMIQNKNCVLSIPTSGGKTLVGEILI-MKEL-KIKQKSAIFILPYISLVHEKYQSLAK 125
+ GG+ G +EL + Q + + I E L +
Sbjct: 159 ----------IF-----GGQ---GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 126 AAEEF-KFYLEVL 137
+ K + + L
Sbjct: 201 TTLDAEKVFTQGL 213
Score = 29.2 bits (65), Expect = 0.40
Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 64/154 (41%)
Query: 27 KEL-KIKQKSAIFILPYISLVHEKYQSLAKAAEEF-KFYLEG-KCLEMIQNKN------- 76
+EL + Q + + I E L + + K + +G LE ++N +
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 77 ---CVLSIPTSG--------------------------GKTLVGEILIMKELKIKQKSAI 107
+S P G G T + L+ +A+
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV---------TAV 281
Query: 108 FILPYISLVHEKYQSLAKAAEEF----KFYLEVL 137
I + + E F + + VL
Sbjct: 282 AI------------AETDSWESFFVSVRKAITVL 303
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 31.4 bits (70), Expect = 0.067
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIM----KELKIKQKSAIFILPYISLVHEKYQSLAK 125
I KN ++ PT GKT V ++ ++ +F+ + + ++
Sbjct: 20 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 77
Score = 31.1 bits (69), Expect = 0.098
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIM----KELKIKQKSAIFILPYISLVHEKYQSLAK 55
KN ++ PT GKT V ++ ++ +F+ + + ++
Sbjct: 21 NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 77
>1kcg_C ULBP3 protein; protein-protein complex, C-type lectin-like
receptor, MHC class I-like molecule, immune system; HET:
GSH; 2.60A {Homo sapiens} SCOP: d.19.1.1
Length = 178
Score = 31.0 bits (71), Expect = 0.076
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLEMIQ 73
EK++ + FK C ++
Sbjct: 142 EKWEKDSGLTTFFKMVSMRDCKSWLR 167
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 30.7 bits (68), Expect = 0.13
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKELKI----KQKSAIFILPYISLVHEKYQSLAK 125
I KN ++ PT GKT V ++ + ++ +F+ + + ++
Sbjct: 261 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318
Score = 30.3 bits (67), Expect = 0.18
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKI----KQKSAIFILPYISLVHEKYQSLAK 55
KN ++ PT GKT V ++ + ++ +F+ + + ++
Sbjct: 262 NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318
>1mhc_A MHC class I antigen H2-M3; histocompatibility antigen/peptide,
histocompatibility antig peptide complex; HET: FME NAG;
2.10A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 282
Score = 30.3 bits (69), Expect = 0.17
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A AE F+ Y+EG+CLE++
Sbjct: 150 AGTAEYFRAYVEGECLELLH 169
>1zs8_A Histocompatibility 2, M region locus 10.5; major histocompatibility
complex, MHC, vomeronasal organ, VN receptors, pheromone
receptors, pepti immune system; HET: NAG; 3.00A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 274
Score = 30.0 bits (68), Expect = 0.17
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
E ++ YL+G+C E
Sbjct: 149 GSVTEGWRTYLKGECTERFL 168
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 30.1 bits (68), Expect = 0.20
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A AE + YLEG C+E ++
Sbjct: 292 AGEAERLRAYLEGTCVEWLR 311
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 30.1 bits (68), Expect = 0.22
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A AE ++ YLEG+C+E ++
Sbjct: 295 AGDAEYYRAYLEGECVEWLR 314
>3bev_A Major histocompatibility complex class I glycoprotein haplotype
B21; MHC class I, chicken, BF21, 11MER, peptide, bulge,
water cushion, immune response, immunoglobulin domain,
MHC I; 2.10A {Gallus gallus} PDB: 3bew_A
Length = 274
Score = 29.5 bits (67), Expect = 0.30
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
AE K YLE C+E ++
Sbjct: 147 GGYAEGLKQYLEETCVEWLR 166
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 29.4 bits (66), Expect = 0.32
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A AE + YLEG C+E ++
Sbjct: 150 AGEAERLRAYLEGTCVEWLR 169
>2yf1_A Major histocompatibility complex class I glycoPro haplotype B21;
immune system, BF21, immune response, immunoglobulin
domain; 2.75A {Gallus gallus} PDB: 2yez_A 2yf5_A 2yf6_A
Length = 329
Score = 29.2 bits (66), Expect = 0.33
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
AE K YLE C+E ++
Sbjct: 168 GGYAEGLKQYLEETCVEWLR 187
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 29.2 bits (64), Expect = 0.43
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 72 IQNKNCVLSIPTSGGKTLVGEILIMKEL----KIKQKSAIFILPYISLVHEKYQSLAK 125
I KN ++ PT GKT V ++ ++ +F+ + + ++
Sbjct: 261 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318
Score = 28.8 bits (63), Expect = 0.58
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 2 VQNKNCVLSIPTSGGKTLVGEILIMKEL----KIKQKSAIFILPYISLVHEKYQSLAK 55
+ KN ++ PT GKT V ++ ++ +F+ + + ++
Sbjct: 261 INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318
>1r3h_A MHC H2-TL-T10-129; class IB MHC, gammadelta T cell ligand, immune
system; 2.50A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB:
1c16_A 1ypz_A*
Length = 260
Score = 28.4 bits (64), Expect = 0.73
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 42 YISL--VHEKYQSLAKAAEEFKFYLEGKCLEMIQ 73
+L + +LEG C +++Q
Sbjct: 120 LPTLSENPSSCTVGNSTVPQISQHLEGHCSDVLQ 153
>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation,
glycoprote immune response, immunoglobulin domain, MHC
I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC;
2.21A {Human herpesvirus 5}
Length = 281
Score = 28.1 bits (63), Expect = 0.86
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 54 AKAAEEFKFYLEGKCLE 70
+ YL+G C +
Sbjct: 160 EGDTTIQRNYLKGNCTQ 176
>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type
(immunoglobulin-like) domain, histocompatibi antigen,
immune system; HET: 16A; 1.32A {Gallus gallus} PDB:
3p77_A*
Length = 275
Score = 28.0 bits (63), Expect = 0.91
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 57 AEEFKFYLEGKCLEMIQ 73
AE +K L C++ ++
Sbjct: 152 AERWKHELGTVCVQNLR 168
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral
protein complex, immune response, innate immunity,
structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens}
PDB: 1je6_A 1hyr_C 1b3j_A*
Length = 319
Score = 27.7 bits (62), Expect = 1.1
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEMIQ 73
++ A + ++ CL+ +Q
Sbjct: 146 FWKEDAMKTKTHYRAMQADCLQKLQ 170
>3m17_A IGG receptor FCRN large subunit P51; immunoglobulin binding
protein, cell membrane, disulfide BON glycoprotein,
IGG-binding protein, immunoglobulin domain; 2.60A {Homo
sapiens} PDB: 1exu_A 3m1b_A
Length = 267
Score = 27.6 bits (62), Expect = 1.2
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEMIQ 73
++Q KAA + +L C ++
Sbjct: 140 RWQQQDKAANKELTFLLFSCPHRLR 164
>1t7v_A Zinc-alpha-2-glycoprotein; MHC class I homolog, PEG, lipid binding
protein; HET: NAG P6G; 1.95A {Homo sapiens} SCOP:
b.1.1.2 d.19.1.1 PDB: 1t7w_A* 1t7x_A* 1t7y_A* 1t7z_A*
1t80_A* 2icn_A* 3es6_A* 1zag_A*
Length = 278
Score = 27.6 bits (62), Expect = 1.2
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 57 AEEFKFYLEGKCLEMIQ 73
+ K YLE +C ++
Sbjct: 155 VQRAKAYLEEECPATLR 171
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 28.1 bits (63), Expect = 1.2
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ ++ + PT GKT G + + L +K K I P LV + +++ K AE+
Sbjct: 68 ILRKESFAATAPTGVGKTSFG-LAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKA 126
Query: 61 KFYLEGKCL 69
E
Sbjct: 127 GVGTENLIG 135
Score = 27.7 bits (62), Expect = 1.4
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 71 MIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 130
+++ ++ + PT GKT G + + L +K K I P LV + +++ K AE+
Sbjct: 68 ILRKESFAATAPTGVGKTSFG-LAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKA 126
Query: 131 KFYLEVL 137
E L
Sbjct: 127 GVGTENL 133
>3fru_A Neonatal FC receptor; complex (immunoglobulin-binding protein),
complex (immunoglo binding protein) complex; HET: NAG
FUL NDG BMA MAN GAL FUC; 2.20A {Rattus norvegicus} SCOP:
b.1.1.2 d.19.1.1 PDB: 1frt_A* 1i1a_A*
Length = 269
Score = 27.6 bits (62), Expect = 1.3
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEMIQ 73
+ +AA + +L C E +
Sbjct: 142 LWMKQPEAARKESEFLLTSCPERLL 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.4
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 48 EKYQSLAKAAEEFKFY 63
EK Q+L K K Y
Sbjct: 18 EK-QALKKLQASLKLY 32
Score = 27.2 bits (59), Expect = 1.4
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 118 EKYQSLAKAAEEFKFY 133
EK Q+L K K Y
Sbjct: 18 EK-QALKKLQASLKLY 32
>3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D,
alpha-galactosylceramide, protein complex, cell
membrane, disulfide bond, endosome; HET: NDG BMA NAG
AGH; 2.50A {Homo sapiens} PDB: 2po6_A* 3u0p_A* 3sdx_A*
1zt4_A* 3tzv_C*
Length = 284
Score = 27.5 bits (62), Expect = 1.5
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 45 LVHEKYQSLAKAAEEFKFYLEGKCLEMIQ 73
L + E ++ L G C + +
Sbjct: 144 LAIQVLNQDKWTRETVQWLLNGTCPQFVS 172
>1a6z_A HFE; HFE, hereditary hemochromatosis, MHC class I, MHC class I
complex; 2.60A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 1de4_A*
Length = 275
Score = 27.2 bits (61), Expect = 1.5
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 57 AEEFKFYLEGKCLEMIQ 73
A + + YLE C +Q
Sbjct: 154 ARQNRAYLERDCPAQLQ 170
>1jfm_A RAE-1 beta, retinoic acid early transcript beta; murine NK cell
ligand, NKG2D, MHC-I platform, immune system; 2.85A {Mus
musculus} SCOP: d.19.1.1 PDB: 1jsk_C
Length = 174
Score = 26.6 bits (59), Expect = 2.2
Identities = 2/20 (10%), Positives = 7/20 (35%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
+ +L +C + +
Sbjct: 146 DGEFVKQLKFLIHECSQKMD 165
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 27.2 bits (59), Expect = 2.2
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 125
+Q K S PT+ GKT + KS ++ P L HE ++
Sbjct: 151 RAMQRKIIFHSGPTNSGKTYHA-----IQKYFSAKSGVYCGPLKLLAHEIFEKSNA 201
Score = 25.3 bits (54), Expect = 9.8
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAK 55
+Q K S PT+ GKT + KS ++ P L HE ++
Sbjct: 152 AMQRKIIFHSGPTNSGKTYHA-----IQKYFSAKSGVYCGPLKLLAHEIFEKSNA 201
>3g08_A T-cell surface glycoprotein CD1D1; antigen presentation,
glycolipid, NKT cells, cell membrane, glycoprotein,
immune response, immunoglobulin domain; HET: NAG FEE
PLM; 1.60A {Mus musculus} PDB: 1z5l_A* 2gaz_A* 2q7y_A*
2akr_A* 3ma7_C* 3o8x_A* 3o9w_A* 3qux_A* 3quy_A* 3quz_A*
3rzc_A* 3t1f_A* 3ta3_A* 3tvm_A* 3ubx_A* 3ilp_A* 3ilq_C*
3rtq_A* 3rug_A* 3ard_A* ...
Length = 285
Score = 26.4 bits (59), Expect = 3.7
Identities = 2/28 (7%), Positives = 8/28 (28%)
Query: 46 VHEKYQSLAKAAEEFKFYLEGKCLEMIQ 73
+ + + + L C ++
Sbjct: 146 PIKVLNADQGTSATVQMLLNDTCPLFVR 173
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal,
immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP:
b.1.1.2 d.19.1.1
Length = 315
Score = 25.7 bits (57), Expect = 5.2
Identities = 2/26 (7%), Positives = 8/26 (30%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLEMIQ 73
+ + + + L C ++
Sbjct: 145 KVLNADQGTSATVQMLLNDTCPLFVR 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.372
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,962,002
Number of extensions: 103695
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 65
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)