RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2029
(138 letters)
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 38.4 bits (88), Expect = 9e-05
Identities = 8/63 (12%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 70 EMI-QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAE 128
++ + + ++ + GKT I++E + + + P + E ++L
Sbjct: 4 DIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPI 63
Query: 129 EFK 131
++
Sbjct: 64 RYQ 66
Score = 37.6 bits (86), Expect = 2e-04
Identities = 8/59 (13%), Positives = 23/59 (38%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFK 61
+ + ++ + GKT I++E + + + P + E ++L ++
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQ 66
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 34.8 bits (78), Expect = 0.001
Identities = 13/67 (19%), Positives = 25/67 (37%)
Query: 67 KCLEMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126
+ NC++ +PT GKTL+ ++ L + + P LV + +S +
Sbjct: 16 VIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75
Query: 127 AEEFKFY 133
Sbjct: 76 FNLPPEK 82
Score = 32.1 bits (71), Expect = 0.013
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEFKF 62
+ NC++ +PT GKTL+ ++ L + + P LV + +S +
Sbjct: 22 KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81
Query: 63 Y 63
Sbjct: 82 K 82
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 31.4 bits (70), Expect = 0.023
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 70 EMIQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEE 129
+++ ++ + PT GKT G + + ++ I P LV + +++ K AE+
Sbjct: 54 RILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR-CYVIFPTSLLVIQAAETIRKYAEK 112
Query: 130 FKFYLEVL 137
E L
Sbjct: 113 AGVGTENL 120
Score = 29.9 bits (66), Expect = 0.074
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 1 MVQNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKAAEEF 60
+++ ++ + PT GKT G + + ++ I P LV + +++ K AE+
Sbjct: 55 ILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR-CYVIFPTSLLVIQAAETIRKYAEKA 113
Query: 61 KF 62
Sbjct: 114 GV 115
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 30.6 bits (68), Expect = 0.033
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 56
+ L PT GK+ + + + + P ++ ++KA
Sbjct: 7 SFQVAHLHAPTGSGKSTK----VPAAYAAQGYKVLVLNPSVAATLGFGAYMSKA 56
Score = 30.6 bits (68), Expect = 0.033
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQSLAKA 126
+ L PT GK+ + + + + P ++ ++KA
Sbjct: 7 SFQVAHLHAPTGSGKSTK----VPAAYAAQGYKVLVLNPSVAATLGFGAYMSKA 56
>d1k5na2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains
{Human (Homo sapiens), HLA-B27 [TaxId: 9606]}
Length = 181
Score = 29.2 bits (65), Expect = 0.11
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A+ AE+ + YLEG+C+E ++
Sbjct: 150 ARVAEQLRAYLEGECVEWLR 169
>d1mhca2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains
{Mouse (Mus musculus), H-2M3 [TaxId: 10090]}
Length = 181
Score = 27.6 bits (61), Expect = 0.35
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A AE F+ Y+EG+CLE++
Sbjct: 150 AGTAEYFRAYVEGECLELLH 169
>d1exua2 d.19.1.1 (A:4-176) Fc (IgG) receptor, alpha-1 and alpha-2
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 173
Score = 27.7 bits (61), Expect = 0.38
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEMIQ 73
++Q KAA + +L C ++
Sbjct: 137 RWQQQDKAANKELTFLLFSCPHRLR 161
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.3 bits (59), Expect = 0.40
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 3 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 51
+ VL GKT I+ E ++ + + P ++ E +
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKE 54
Score = 27.3 bits (59), Expect = 0.40
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 73 QNKNCVLSIPTSGGKTLVGEILIMKELKIKQKSAIFILPYISLVHEKYQ 121
+ VL GKT I+ E ++ + + P ++ E +
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKE 54
>d1neza2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains
{Mouse (Mus musculus), tla(c), H-2 class [TaxId: 10090]}
Length = 181
Score = 27.3 bits (60), Expect = 0.58
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A E + YLEG C + +
Sbjct: 150 AGYTELRRTYLEGPCKDSLL 169
>d3frua2 d.19.1.1 (A:1-178) Fc (IgG) receptor, alpha-1 and alpha-2
domains {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 27.3 bits (60), Expect = 0.59
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLE 70
+ +AA + +L C E
Sbjct: 142 LWMKQPEAARKESEFLLTSCPE 163
>d1jfma_ d.19.1.1 (A:) NK cell ligand RAE-1 beta {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 174
Score = 26.9 bits (59), Expect = 0.63
Identities = 2/20 (10%), Positives = 7/20 (35%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
+ +L +C + +
Sbjct: 146 DGEFVKQLKFLIHECSQKMD 165
>d1kjva2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains
{Rat (Rattus norvegicus), RT1-AA [TaxId: 10116]}
Length = 181
Score = 26.9 bits (59), Expect = 0.66
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 54 AKAAEEFKFYLEGKCLEMIQ 73
A+ + YLEG+C+E ++
Sbjct: 150 DGFADLHRAYLEGECVESLR 169
>d1t7va2 d.19.1.1 (A:5-183) Zinc-alpha-2-glycoprotein, ZAG {Human
(Homo sapiens) [TaxId: 9606]}
Length = 179
Score = 26.9 bits (59), Expect = 0.71
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEMIQ 73
K+++ + K YLE +C ++
Sbjct: 143 KWEAEPVYVQRAKAYLEEECPATLR 167
>d1zs8a2 d.19.1.1 (A:1-180) Class I MHC, alpha-1 and alpha-2 domains
{Mouse (Mus musculus), H-2M10 [TaxId: 10090]}
Length = 180
Score = 26.9 bits (59), Expect = 0.81
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 54 AKAAEEFKFYLEGKCLE 70
E ++ YL+G+C E
Sbjct: 149 GSVTEGWRTYLKGECTE 165
>d1de4a2 d.19.1.1 (A:4-181) Hemochromatosis protein Hfe, alpha-1 and
alpha-2 domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.6 bits (58), Expect = 0.85
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 41 PYISLVHEKYQSLAKAAEEFKFYLEGKCLEMIQ 73
P +++ A + + YLE C +Q
Sbjct: 135 PRAWPTKLEWERHKIRARQNRAYLERDCPAQLQ 167
>d1kcgc_ d.19.1.1 (C:) Class I MHC-related molecule Ulbp3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.5 bits (58), Expect = 0.87
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 49 KYQSLAKAAEEFKFYLEGKCLEMIQ 73
K++ + FK C ++
Sbjct: 143 KWEKDSGLTTFFKMVSMRDCKSWLR 167
>d1hyrc2 d.19.1.1 (C:0-180) Class I MHC homolog {Human (Homo
sapiens), Mic-a [TaxId: 9606]}
Length = 181
Score = 26.1 bits (57), Expect = 1.6
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 54 AKAAEEFKFYLEGKCLE 70
A + + CL+
Sbjct: 151 AMKTKTHYHAMHADCLQ 167
>d1onqa2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains {Human
(Homo sapiens), CD1a [TaxId: 9606]}
Length = 177
Score = 25.7 bits (56), Expect = 1.7
Identities = 3/26 (11%), Positives = 5/26 (19%)
Query: 48 EKYQSLAKAAEEFKFYLEGKCLEMIQ 73
+ + L C I
Sbjct: 140 KVLNQNQHENDITHNLLSDTCPRFIL 165
>d2h26a2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains {Human
(Homo sapiens), CD1a [TaxId: 9606]}
Length = 177
Score = 24.1 bits (52), Expect = 6.2
Identities = 3/17 (17%), Positives = 5/17 (29%)
Query: 57 AEEFKFYLEGKCLEMIQ 73
E + L C +
Sbjct: 149 METVRILLYETCPRYLL 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.372
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,444
Number of extensions: 20324
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 28
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.6 bits)