Query psy2033
Match_columns 124
No_of_seqs 134 out of 1064
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:34:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0748|consensus 100.0 3E-29 6.6E-34 201.5 9.9 117 4-121 168-285 (286)
2 PF03006 HlyIII: Haemolysin-II 99.9 4.5E-25 9.7E-30 167.4 8.5 87 11-100 135-222 (222)
3 TIGR01065 hlyIII channel prote 99.7 3.9E-17 8.4E-22 125.2 9.5 80 12-106 124-203 (204)
4 PRK15087 hemolysin; Provisiona 99.6 1.5E-15 3.3E-20 117.9 9.7 78 12-107 138-216 (219)
5 COG1272 Predicted membrane pro 99.6 7.7E-16 1.7E-20 120.5 6.3 86 8-108 139-224 (226)
6 KOG4243|consensus 98.2 4.2E-08 9.2E-13 77.8 -4.3 55 45-110 236-290 (298)
7 PF05875 Ceramidase: Ceramidas 90.5 5.7 0.00012 31.2 10.5 55 49-103 172-234 (262)
8 KOG3059|consensus 86.2 11 0.00023 31.0 9.6 93 5-112 109-219 (292)
9 PF13965 SID-1_RNA_chan: dsRNA 86.0 14 0.0003 32.9 11.1 59 44-106 483-555 (570)
10 PF02076 STE3: Pheromone A rec 66.2 63 0.0014 26.1 8.7 51 47-98 29-79 (283)
11 PRK10588 hypothetical protein; 45.4 58 0.0013 22.5 4.6 15 6-20 9-23 (97)
12 PRK02237 hypothetical protein; 44.9 44 0.00096 23.7 4.0 30 53-83 64-93 (109)
13 TIGR02112 cyd_oper_ybgE cyd op 44.7 70 0.0015 22.0 4.9 15 6-20 5-19 (93)
14 PF02694 UPF0060: Uncharacteri 43.1 25 0.00054 24.8 2.5 31 53-84 62-92 (107)
15 TIGR02230 ATPase_gene1 F0F1-AT 37.6 1.1E+02 0.0025 21.1 5.1 32 11-42 36-68 (100)
16 PF10233 Cg6151-P: Uncharacter 37.5 1.2E+02 0.0027 21.4 5.3 14 11-24 65-78 (113)
17 PF04080 Per1: Per1-like ; In 37.2 1.1E+02 0.0024 24.7 5.7 21 84-104 243-263 (267)
18 KOG2970|consensus 35.8 1.7E+02 0.0036 24.5 6.5 27 84-110 287-313 (319)
19 PF09604 Potass_KdpF: F subuni 26.5 1.1E+02 0.0023 16.0 3.0 13 61-73 13-25 (25)
20 KOG4255|consensus 23.3 2.6E+02 0.0057 24.1 5.8 13 67-79 176-188 (439)
21 PRK04989 psbM photosystem II r 23.0 1.6E+02 0.0035 16.7 3.2 22 16-37 5-26 (35)
22 TIGR03038 PS_II_psbM photosyst 21.7 1.7E+02 0.0036 16.5 3.2 22 16-37 5-26 (33)
No 1
>KOG0748|consensus
Probab=99.96 E-value=3e-29 Score=201.53 Aligned_cols=117 Identities=40% Similarity=0.616 Sum_probs=104.6
Q ss_pred CCCcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccCCCCCCCccCc
Q psy2033 4 KGTIPSHLGAGQTEQQPPESLSGVVPAMHYGYVEGWFSKVAQASLGWLLLMGVLYIIGGLIYALRVPERYFPGKCDIWFQ 83 (124)
Q Consensus 4 ~~~~~~~~~~~Rt~~f~~lgl~g~vP~~h~~~~~g~~~~l~~~~l~~li~~g~~Y~iGa~fY~~r~PEr~~PG~fD~~g~ 83 (124)
|...|+++.. |+..|+.+|+++++|++|++++.|..+.....++.+.+.++++|++|++||++|+||||+|||||+||+
T Consensus 168 ~~~~~~~r~~-R~~~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~ 246 (286)
T KOG0748|consen 168 KFRTPKRRPL-RAGVFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFDIWGH 246 (286)
T ss_pred hhCCccchhh-HHHHHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccceeCC
Confidence 3346775555 999999999999999999999998865556778899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCC
Q psy2033 84 SHQIFHVLVVSAAFVHYHGITEMAMYRLSS-GGCEAPQP 121 (124)
Q Consensus 84 sHqiwHifvv~g~~~h~~ai~~~~~~r~~~-~~C~~~~~ 121 (124)
||||||+++++++++|+.++.+.+++|++. .+|+...+
T Consensus 247 SHQifHv~vv~~a~~~~~a~~~~~~~~~~~~~~~~~~~~ 285 (286)
T KOG0748|consen 247 SHQIFHVLVVLAALFHLEAVLLDYEWRHSHLCGCPVFLS 285 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence 999999999999999999999999999985 36766543
No 2
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=99.92 E-value=4.5e-25 Score=167.37 Aligned_cols=87 Identities=46% Similarity=0.778 Sum_probs=77.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccCCCCCCCccCcchHHHH
Q psy2033 11 LGAGQTEQQPPESLSGVVPAMHYG-YVEGWFSKVAQASLGWLLLMGVLYIIGGLIYALRVPERYFPGKCDIWFQSHQIFH 89 (124)
Q Consensus 11 ~~~~Rt~~f~~lgl~g~vP~~h~~-~~~g~~~~l~~~~l~~li~~g~~Y~iGa~fY~~r~PEr~~PG~fD~~g~sHqiwH 89 (124)
..+.|+..|+++|+++++|+.|.. ...+..+.. . +.+++.++++|++|++||++|+||||+||+||+||+||||||
T Consensus 135 ~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~--~-~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~H 211 (222)
T PF03006_consen 135 FRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPD--P-LWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWGHSHQIWH 211 (222)
T ss_pred cceeeehHhHHHHHHHHhhhHHHHHHhccccchH--H-HHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCCccHHHHH
Confidence 467899999999999999999955 444444322 4 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2033 90 VLVVSAAFVHY 100 (124)
Q Consensus 90 ifvv~g~~~h~ 100 (124)
++|++|+.+||
T Consensus 212 i~v~~~~~~h~ 222 (222)
T PF03006_consen 212 IFVVLAALCHY 222 (222)
T ss_pred HHHHHHHHHHC
Confidence 99999999996
No 3
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=99.72 E-value=3.9e-17 Score=125.20 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=68.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccCCCCCCCccCcchHHHHHH
Q psy2033 12 GAGQTEQQPPESLSGVVPAMHYGYVEGWFSKVAQASLGWLLLMGVLYIIGGLIYALRVPERYFPGKCDIWFQSHQIFHVL 91 (124)
Q Consensus 12 ~~~Rt~~f~~lgl~g~vP~~h~~~~~g~~~~l~~~~l~~li~~g~~Y~iGa~fY~~r~PEr~~PG~fD~~g~sHqiwHif 91 (124)
.+.|+.+|++||+++++|+-+.. +..+..++.+++.||++|++|++||++|+|||+.| |||||++
T Consensus 124 r~~r~~~y~~~G~~~v~~~~~~~------~~~~~~~~~~l~~gg~~Y~~G~~fY~~~~p~~~~~---------H~iwH~f 188 (204)
T TIGR01065 124 RWLSLFLYLIMGWLVVLVIKPLY------HNLPGAGFSLLAAGGLLYTVGAIFYALKWPIPFTY---------HAIWHLF 188 (204)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH------HhCCHHHHHHHHHHhHHHHcchHheeecCCCCCCc---------ChHHHHH
Confidence 46799999999999988765442 33455678999999999999999999999999633 9999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy2033 92 VVSAAFVHYHGITEM 106 (124)
Q Consensus 92 vv~g~~~h~~ai~~~ 106 (124)
|++|+.+|+.+++.+
T Consensus 189 V~~g~~~h~~~i~~~ 203 (204)
T TIGR01065 189 VLGASACHFVAILFY 203 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999865
No 4
>PRK15087 hemolysin; Provisional
Probab=99.63 E-value=1.5e-15 Score=117.89 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=67.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc-CCccCCCCCCCccCcchHHHHH
Q psy2033 12 GAGQTEQQPPESLSGVVPAMHYGYVEGWFSKVAQASLGWLLLMGVLYIIGGLIYALR-VPERYFPGKCDIWFQSHQIFHV 90 (124)
Q Consensus 12 ~~~Rt~~f~~lgl~g~vP~~h~~~~~g~~~~l~~~~l~~li~~g~~Y~iGa~fY~~r-~PEr~~PG~fD~~g~sHqiwHi 90 (124)
-+.|+..|++|||++++|+.|.... .+..++.++++||++|++|++||+.| .|| ||||||+
T Consensus 138 r~l~~~~Yl~mGw~~v~~~~~l~~~------~~~~~l~~l~~GG~~Y~~G~~fY~~~~~p~------------~H~IwH~ 199 (219)
T PRK15087 138 KVLSLVTYLAMGWLSLIVIYQLAIK------LAIGGVTLLAVGGVVYSLGVIFYVCKRIPY------------NHAIWHG 199 (219)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHhHHHHhhHHHHccCCCCC------------chhHHHH
Confidence 3679999999999999998776533 45668899999999999999999985 553 8999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2033 91 LVVSAAFVHYHGITEMA 107 (124)
Q Consensus 91 fvv~g~~~h~~ai~~~~ 107 (124)
||++|+.+|+.+++.+.
T Consensus 200 fVl~ga~~H~~ai~~~~ 216 (219)
T PRK15087 200 FVLGGSVCHFLAIYLYV 216 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 5
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=99.61 E-value=7.7e-16 Score=120.54 Aligned_cols=86 Identities=26% Similarity=0.303 Sum_probs=74.1
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCccCCCCCCCccCcchHH
Q psy2033 8 PSHLGAGQTEQQPPESLSGVVPAMHYGYVEGWFSKVAQASLGWLLLMGVLYIIGGLIYALRVPERYFPGKCDIWFQSHQI 87 (124)
Q Consensus 8 ~~~~~~~Rt~~f~~lgl~g~vP~~h~~~~~g~~~~l~~~~l~~li~~g~~Y~iGa~fY~~r~PEr~~PG~fD~~g~sHqi 87 (124)
|..-..+|+.+|++|||++++|+-+.... ++..++.+++.||++|++|++||+.|+ |.++++|||
T Consensus 139 ~~~~r~ls~~~yl~mGw~~v~~~~~l~~~------l~~~~~~~l~~GGv~YsvG~ifY~~~~---------~~~~~~H~i 203 (226)
T COG1272 139 KKRFRKLSLVLYLAMGWLGLIVIKPLIAK------LGLIGLVLLALGGVLYSVGAIFYVLRI---------DRIPYSHAI 203 (226)
T ss_pred cCcCceeeehhhHHHHHHHHHHHHHHHHh------CchHHHHHHHHHhHHheeeeEEEEEee---------ccCCchHHH
Confidence 44556789999999999999997666544 445788999999999999999999998 345699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2033 88 FHVLVVSAAFVHYHGITEMAM 108 (124)
Q Consensus 88 wHifvv~g~~~h~~ai~~~~~ 108 (124)
||+||++|+.+|+.+++.++.
T Consensus 204 wH~fVv~ga~~Hf~ai~~~~~ 224 (226)
T COG1272 204 WHLFVVGGAACHFIAILFYVI 224 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998764
No 6
>KOG4243|consensus
Probab=98.22 E-value=4.2e-08 Score=77.76 Aligned_cols=55 Identities=29% Similarity=0.367 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccCCCCCCCccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2033 45 QASLGWLLLMGVLYIIGGLIYALRVPERYFPGKCDIWFQSHQIFHVLVVSAAFVHYHGITEMAMYR 110 (124)
Q Consensus 45 ~~~l~~li~~g~~Y~iGa~fY~~r~PEr~~PG~fD~~g~sHqiwHifvv~g~~~h~~ai~~~~~~r 110 (124)
..++.++..||.+|.+|++|+.++--- -..|.|||+||++|+.||+.|++.++ ||
T Consensus 236 ~~Gl~~l~~GG~~Y~lGvvFFK~DG~i----------pfAHAIWHLFV~l~A~cHyYAi~~~L-y~ 290 (298)
T KOG4243|consen 236 TDGLQELATGGLFYCLGVVFFKSDGII----------PFAHAIWHLFVALAAGCHYYAIWKYL-YR 290 (298)
T ss_pred chhHHHHHhCCEEEEEEEEEEecCCce----------ehHHHHHHHHHHHHcchhHHHHHHHH-hC
Confidence 567888999999999999999887421 25899999999999999999999886 54
No 7
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=90.46 E-value=5.7 Score=31.16 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCc--cCCCCC------CCccCcchHHHHHHHHHHHHHHHHHH
Q psy2033 49 GWLLLMGVLYIIGGLIYALRVPE--RYFPGK------CDIWFQSHQIFHVLVVSAAFVHYHGI 103 (124)
Q Consensus 49 ~~li~~g~~Y~iGa~fY~~r~PE--r~~PG~------fD~~g~sHqiwHifvv~g~~~h~~ai 103 (124)
.....+.+++.+|.++...+..- .+...+ +.+...-|.+||+++.+|++......
T Consensus 172 ~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~ 234 (262)
T PF05875_consen 172 RLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFV 234 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888898888777531 111111 22223589999999999988766443
No 8
>KOG3059|consensus
Probab=86.19 E-value=11 Score=31.05 Aligned_cols=93 Identities=12% Similarity=-0.031 Sum_probs=64.0
Q ss_pred CCcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH------------------HHHHHHHHHHhh
Q psy2033 5 GTIPSHLGAGQTEQQPPESLSGVVPAMHYGYVEGWFSKVAQASLGWLLLM------------------GVLYIIGGLIYA 66 (124)
Q Consensus 5 ~~~~~~~~~~Rt~~f~~lgl~g~vP~~h~~~~~g~~~~l~~~~l~~li~~------------------g~~Y~iGa~fY~ 66 (124)
-+.+++.+..|+...+.++++++-|+.+-+...+-.+..-...++..+.. .-.+..+.++++
T Consensus 109 ~sl~~~~~~lks~~~vt~~ly~lsPVl~TLt~SiSsDsI~a~sv~l~L~~~ff~~y~~s~~~vs~~lS~na~v~~sv~La 188 (292)
T KOG3059|consen 109 LSLALLPEDLKSIFTVTLFLYGLSPVLKTLTKSISSDSIWAMSVWLLLGNLFFHDYGISTIRVSGPLSLNAAVSASVLLA 188 (292)
T ss_pred CChhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcchHHHHHHHHHHHHHhcccccccccccCCcchHHHHHHHHHHHH
Confidence 35567889999999999999999999998875544333322233322222 134677889999
Q ss_pred hcCCccCCCCCCCccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2033 67 LRVPERYFPGKCDIWFQSHQIFHVLVVSAAFVHYHGITEMAMYRLS 112 (124)
Q Consensus 67 ~r~PEr~~PG~fD~~g~sHqiwHifvv~g~~~h~~ai~~~~~~r~~ 112 (124)
+|.|.+ +|+|..+-..+|..+++-.+..|..
T Consensus 189 SRl~~~---------------~~vF~fllfai~~~al~p~~~~~i~ 219 (292)
T KOG3059|consen 189 SRLEKS---------------IHVFNFLLFAIQLFALLPNFRKRIK 219 (292)
T ss_pred HhcCCc---------------hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999643 3556666566888888877777665
No 9
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=85.99 E-value=14 Score=32.88 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcC--------------CccCCCCCCCccCcchHHHHHHHHHHHHHHHHHHHHH
Q psy2033 44 AQASLGWLLLMGVLYIIGGLIYALRV--------------PERYFPGKCDIWFQSHQIFHVLVVSAAFVHYHGITEM 106 (124)
Q Consensus 44 ~~~~l~~li~~g~~Y~iGa~fY~~r~--------------PEr~~PG~fD~~g~sHqiwHifvv~g~~~h~~ai~~~ 106 (124)
......++++..+.-..+..||-.+. -|...+|-|| +|++||.+-.+|.++-+..+...
T Consensus 483 ~~~~~~~~~~~~~~W~~a~yff~~~~t~w~~tpA~SR~lN~~Cil~~f~D----~HDiwH~~SA~alffsf~~l~~l 555 (570)
T PF13965_consen 483 LLKPIIYLVLAFVSWGFALYFFFQNTTDWTLTPAESRELNKECILLGFFD----WHDIWHFLSAIALFFSFLVLLTL 555 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccccChHhHHhcCCCCcCcCccc----cHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555555653221 2334566676 89999999999888766665543
No 10
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=66.17 E-value=63 Score=26.07 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccCCCCCCCccCcchHHHHHHHHHHHHH
Q psy2033 47 SLGWLLLMGVLYIIGGLIYALRVPERYFPGKCDIWFQSHQIFHVLVVSAAFV 98 (124)
Q Consensus 47 ~l~~li~~g~~Y~iGa~fY~~r~PEr~~PG~fD~~g~sHqiwHifvv~g~~~ 98 (124)
...|+.++-+.+.+.+++...+. +.++||.+|+--.=..-....+..+.+|
T Consensus 29 li~Wl~l~nl~~~INaiIW~~n~-~~~~~~wCDI~~kl~~~~~~g~~~a~lc 79 (283)
T PF02076_consen 29 LIFWLFLSNLIYFINAIIWRDND-INWWPVWCDISTKLIIGSSVGIPAASLC 79 (283)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCC-CccCceeeeehHHHHHHHHHHHHHHHHH
Confidence 34577888899999999999999 8899999998633333333333333333
No 11
>PRK10588 hypothetical protein; Provisional
Probab=45.37 E-value=58 Score=22.54 Aligned_cols=15 Identities=0% Similarity=-0.365 Sum_probs=12.0
Q ss_pred CcCCCCCchhhHHHH
Q psy2033 6 TIPSHLGAGQTEQQP 20 (124)
Q Consensus 6 ~~~~~~~~~Rt~~f~ 20 (124)
--|.|+|+.|+..++
T Consensus 9 y~l~dK~plRaLSli 23 (97)
T PRK10588 9 YAVMDKRPLRALSLV 23 (97)
T ss_pred HHHHhcchHHHHHHH
Confidence 347899999997776
No 12
>PRK02237 hypothetical protein; Provisional
Probab=44.93 E-value=44 Score=23.68 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhhcCCccCCCCCCCccCc
Q psy2033 53 LMGVLYIIGGLIYALRVPERYFPGKCDIWFQ 83 (124)
Q Consensus 53 ~~g~~Y~iGa~fY~~r~PEr~~PG~fD~~g~ 83 (124)
+-|-.|++..++....+ |...|.+.|+.|.
T Consensus 64 AYGGvyI~~Sl~W~w~v-dg~~Pd~~D~iGa 93 (109)
T PRK02237 64 AYGGVYVAGSLLWLWVV-DGVRPDRWDWIGA 93 (109)
T ss_pred HhhhHHHHHHHHHHHHh-cCcCCChhHHHhH
Confidence 34457788888887777 8888999999887
No 13
>TIGR02112 cyd_oper_ybgE cyd operon protein YbgE. This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.
Probab=44.70 E-value=70 Score=21.96 Aligned_cols=15 Identities=7% Similarity=-0.323 Sum_probs=11.8
Q ss_pred CcCCCCCchhhHHHH
Q psy2033 6 TIPSHLGAGQTEQQP 20 (124)
Q Consensus 6 ~~~~~~~~~Rt~~f~ 20 (124)
--|.|+|+.|+..++
T Consensus 5 y~~~dK~~lraLSli 19 (93)
T TIGR02112 5 YELMDKGLLRALSFI 19 (93)
T ss_pred HHHHhcchHHHHHHH
Confidence 347899999987776
No 14
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=43.13 E-value=25 Score=24.83 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhcCCccCCCCCCCccCcc
Q psy2033 53 LMGVLYIIGGLIYALRVPERYFPGKCDIWFQS 84 (124)
Q Consensus 53 ~~g~~Y~iGa~fY~~r~PEr~~PG~fD~~g~s 84 (124)
+-|-.|++..++....+ |...|.+.|+.|..
T Consensus 62 AYGGvfI~~Sl~W~w~v-dg~~Pd~~D~iGa~ 92 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLV-DGVRPDRWDWIGAA 92 (107)
T ss_pred HhhhhHHHHHHHHHhhh-cCcCCChHHHHhHH
Confidence 34457788888888877 88889999999873
No 15
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=37.64 E-value=1.1e+02 Score=21.10 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=21.2
Q ss_pred CCchhhH-HHHHHHHHHHHHHHHHHHHhhhhhh
Q psy2033 11 LGAGQTE-QQPPESLSGVVPAMHYGYVEGWFSK 42 (124)
Q Consensus 11 ~~~~Rt~-~f~~lgl~g~vP~~h~~~~~g~~~~ 42 (124)
....|.. ++-.+|++.++|++=.+++--|.+.
T Consensus 36 ~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 36 RSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444 4568899999998888776555443
No 16
>PF10233 Cg6151-P: Uncharacterized conserved protein CG6151-P; InterPro: IPR019365 This is a family of small, less than 200 residue long, proteins which are conserved from fungi to humans. The function of these proteins are unknown. The entry contains Golgi membrane proteins involved in vesicular trafficking that belong to the TVP18 family and the calcium channel flower protein from Drosophila. The flower proteins are calcium channels that regulates synaptic endocytosis and hence couples exo- with endocytosis. Isoform A and isoform B are mainly required in the nervous system and necessary in photoreceptor cells [].
Probab=37.47 E-value=1.2e+02 Score=21.42 Aligned_cols=14 Identities=0% Similarity=-0.287 Sum_probs=12.3
Q ss_pred CCchhhHHHHHHHH
Q psy2033 11 LGAGQTEQQPPESL 24 (124)
Q Consensus 11 ~~~~Rt~~f~~lgl 24 (124)
.++.|...|+.|+.
T Consensus 65 ~n~~Ra~~Y~~mai 78 (113)
T PF10233_consen 65 TNWMRAALYCVMAI 78 (113)
T ss_pred cchHHHHHHHHHHH
Confidence 68899999999876
No 17
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=37.24 E-value=1.1e+02 Score=24.70 Aligned_cols=21 Identities=14% Similarity=0.566 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q psy2033 84 SHQIFHVLVVSAAFVHYHGIT 104 (124)
Q Consensus 84 sHqiwHifvv~g~~~h~~ai~ 104 (124)
+|.+||...+.-+...|.-+.
T Consensus 243 AHALWHl~Tip~~~~wy~Fl~ 263 (267)
T PF04080_consen 243 AHALWHLATIPPTYLWYDFLI 263 (267)
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 999999999988887765443
No 18
>KOG2970|consensus
Probab=35.76 E-value=1.7e+02 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.389 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2033 84 SHQIFHVLVVSAAFVHYHGITEMAMYR 110 (124)
Q Consensus 84 sHqiwHifvv~g~~~h~~ai~~~~~~r 110 (124)
+|.+||...+--+...+.-+....+++
T Consensus 287 AHALWHlaTIplt~~~~~Fv~~d~~~~ 313 (319)
T KOG2970|consen 287 AHALWHLATIPLTILWYDFVSDDYDFA 313 (319)
T ss_pred hHHHHHhhcCccHHHHHHHhhchhhhh
Confidence 999999998888887777666555444
No 19
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=26.48 E-value=1.1e+02 Score=16.02 Aligned_cols=13 Identities=54% Similarity=0.736 Sum_probs=9.0
Q ss_pred HHHHhhhcCCccC
Q psy2033 61 GGLIYALRVPERY 73 (124)
Q Consensus 61 Ga~fY~~r~PEr~ 73 (124)
+=.+|+.-.||||
T Consensus 13 ~YL~~aLl~PErF 25 (25)
T PF09604_consen 13 VYLFYALLRPERF 25 (25)
T ss_pred HHHHHHHhCcccC
Confidence 3446677789985
No 20
>KOG4255|consensus
Probab=23.29 E-value=2.6e+02 Score=24.10 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=7.9
Q ss_pred hcCCccCCCCCCC
Q psy2033 67 LRVPERYFPGKCD 79 (124)
Q Consensus 67 ~r~PEr~~PG~fD 79 (124)
.+.|+|.+|-+|.
T Consensus 176 n~t~~r~fP~rFs 188 (439)
T KOG4255|consen 176 NGTPGRPFPPRFS 188 (439)
T ss_pred CCCCCCCCCCCcc
Confidence 4456776666653
No 21
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=22.96 E-value=1.6e+02 Score=16.74 Aligned_cols=22 Identities=14% Similarity=-0.044 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q psy2033 16 TEQQPPESLSGVVPAMHYGYVE 37 (124)
Q Consensus 16 t~~f~~lgl~g~vP~~h~~~~~ 37 (124)
...|++..++.++|....+.++
T Consensus 5 ~lgfiAt~Lfi~iPt~FLlilY 26 (35)
T PRK04989 5 DLGFVASLLFVLVPTVFLIILY 26 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3568888899999987777654
No 22
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=21.72 E-value=1.7e+02 Score=16.46 Aligned_cols=22 Identities=14% Similarity=-0.087 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q psy2033 16 TEQQPPESLSGVVPAMHYGYVE 37 (124)
Q Consensus 16 t~~f~~lgl~g~vP~~h~~~~~ 37 (124)
...|++..++..+|....+.++
T Consensus 5 ~l~fiAt~Lfi~iPt~FLiilY 26 (33)
T TIGR03038 5 ILGFIATLLFILVPTVFLLILY 26 (33)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3568888999999987776554
Done!