Query psy2033
Match_columns 124
No_of_seqs 134 out of 1064
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 22:35:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2033.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2033hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ik7a_ a.77.1.2 (A:) Pelle de 36.2 13 0.00096 20.6 2.5 32 79-110 11-44 (52)
2 d1tdja2 d.58.18.2 (A:336-423) 32.8 3.9 0.00028 25.0 -0.2 13 64-78 5-17 (88)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 25.3 39 0.0028 17.1 3.0 20 18-37 7-26 (36)
4 d1tdja3 d.58.18.2 (A:424-514) 17.7 7.1 0.00052 24.0 -1.2 12 64-77 12-23 (91)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 16.7 58 0.0042 15.2 2.6 15 53-67 3-17 (27)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 13.3 86 0.0062 15.5 2.6 16 53-68 12-27 (34)
7 d1c99a_ f.17.1.1 (A:) F1F0 ATP 11.4 51 0.0037 19.4 1.6 24 7-30 42-65 (79)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 10.5 1.1E+02 0.0083 15.2 3.5 18 14-31 13-30 (37)
9 d1l8ka_ c.45.1.2 (A:) Tyrosine 10.0 49 0.0036 22.7 1.3 15 10-24 213-227 (273)
10 d1g4us2 c.45.1.2 (S:297-539) S 9.4 53 0.0039 22.2 1.3 14 9-22 185-198 (243)
No 1
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=36.24 E-value=13 Score=20.64 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=26.6
Q ss_pred CccCc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2033 79 DIWFQ--SHQIFHVLVVSAAFVHYHGITEMAMYR 110 (124)
Q Consensus 79 D~~g~--sHqiwHifvv~g~~~h~~ai~~~~~~r 110 (124)
++||+ .|.|--+|+++.-.=|+.|+...-++-
T Consensus 11 ~~Wg~q~NHTi~eLF~ll~~mk~~~aM~iiK~~V 44 (52)
T d1ik7a_ 11 NIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYV 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56766 899999999999999999988766554
No 2
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.85 E-value=3.9 Score=25.04 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.1
Q ss_pred HhhhcCCccCCCCCC
Q psy2033 64 IYALRVPERYFPGKC 78 (124)
Q Consensus 64 fY~~r~PEr~~PG~f 78 (124)
+|+..+||| ||.|
T Consensus 5 l~~v~iPEr--pGaf 17 (88)
T d1tdja2 5 LLAVTIPEE--KGSF 17 (88)
T ss_dssp EEEEECCBS--SSCS
T ss_pred EEEEEcCCC--ccHH
Confidence 467789998 9875
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.33 E-value=39 Score=17.14 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy2033 18 QQPPESLSGVVPAMHYGYVE 37 (124)
Q Consensus 18 ~f~~lgl~g~vP~~h~~~~~ 37 (124)
-|++..++.++|....+.++
T Consensus 7 g~iAt~LFilvPt~FLliLy 26 (36)
T d2axtm1 7 GLIATALFVLVPSVFLIILY 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 46788888899987777665
No 4
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.70 E-value=7.1 Score=23.96 Aligned_cols=12 Identities=42% Similarity=1.082 Sum_probs=9.0
Q ss_pred HhhhcCCccCCCCC
Q psy2033 64 IYALRVPERYFPGK 77 (124)
Q Consensus 64 fY~~r~PEr~~PG~ 77 (124)
+|+..+||| ||.
T Consensus 12 l~~v~iPEr--pGa 23 (91)
T d1tdja3 12 LYSFEFPES--PGA 23 (91)
T ss_dssp EEEEECCCC--TTH
T ss_pred EEEEECCCC--ccH
Confidence 466789998 774
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.66 E-value=58 Score=15.20 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhh
Q psy2033 53 LMGVLYIIGGLIYAL 67 (124)
Q Consensus 53 ~~g~~Y~iGa~fY~~ 67 (124)
++.+.-++|.+||+.
T Consensus 3 lgli~~tl~glf~aa 17 (27)
T d2e74g1 3 LGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH
Confidence 344555666777753
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.32 E-value=86 Score=15.51 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhc
Q psy2033 53 LMGVLYIIGGLIYALR 68 (124)
Q Consensus 53 ~~g~~Y~iGa~fY~~r 68 (124)
..+++-.+|.+||.+-
T Consensus 12 G~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 12 GMGVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hhhhHhheeeeeeeee
Confidence 3456778899999754
No 7
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}
Probab=11.40 E-value=51 Score=19.42 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=20.0
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHH
Q psy2033 7 IPSHLGAGQTEQQPPESLSGVVPA 30 (124)
Q Consensus 7 ~~~~~~~~Rt~~f~~lgl~g~vP~ 30 (124)
-|...+..||.+|+.+++.-.+|+
T Consensus 42 qPE~~~~l~~~m~ig~al~Ea~~i 65 (79)
T d1c99a_ 42 QPDLIPLLRTQFFIVMGLVDAIPM 65 (79)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHhHHHHHHHHHHHHHHHHH
Confidence 477788899999999998777775
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.46 E-value=1.1e+02 Score=15.23 Aligned_cols=18 Identities=17% Similarity=-0.045 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy2033 14 GQTEQQPPESLSGVVPAM 31 (124)
Q Consensus 14 ~Rt~~f~~lgl~g~vP~~ 31 (124)
-||.+|.++-+.-+..++
T Consensus 13 NrtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALL 30 (37)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 389999877665555443
No 9
>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens), T-cell [TaxId: 9606]}
Probab=10.03 E-value=49 Score=22.69 Aligned_cols=15 Identities=13% Similarity=0.136 Sum_probs=12.3
Q ss_pred CCCchhhHHHHHHHH
Q psy2033 10 HLGAGQTEQQPPESL 24 (124)
Q Consensus 10 ~~~~~Rt~~f~~lgl 24 (124)
.-|.+||++|+++-.
T Consensus 213 s~GvgRtGtf~al~~ 227 (273)
T d1l8ka_ 213 SAGIGRSGTFSLVDT 227 (273)
T ss_dssp SSSSSHHHHHHHHHH
T ss_pred cccccceehHHHHHH
Confidence 459999999998754
No 10
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic domain {Salmonella typhimurium [TaxId: 90371]}
Probab=9.45 E-value=53 Score=22.19 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=11.5
Q ss_pred CCCCchhhHHHHHH
Q psy2033 9 SHLGAGQTEQQPPE 22 (124)
Q Consensus 9 ~~~~~~Rt~~f~~l 22 (124)
..-|.+||+.|+++
T Consensus 185 CsaGvGRTGtf~a~ 198 (243)
T d1g4us2 185 CLGGVGRTGTMAAA 198 (243)
T ss_dssp CSSSSSHHHHHHHH
T ss_pred ECCCCCcchHHHHH
Confidence 35699999999865
Done!