RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2033
         (124 letters)



>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme,
           TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A*
           3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
          Length = 746

 Score = 27.6 bits (60), Expect = 1.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 79  DIWFQSHQIFHVLVVSAAFVHYHGITEMAMYR 110
           D+ FQ  ++ + + +  A   Y G T  AM  
Sbjct: 334 DVRFQGERLAYEISLQEAGAVYGGNTPAAMLT 365


>3zuz_A Protein SHQ1; cell cycle, RNP assembly, X-linked dyskeratosis
          congenita; HET: CME; 1.50A {Saccharomyces cerevisiae}
          PDB: 3zv0_A 3uah_A 3uai_D
          Length = 365

 Score = 27.1 bits (59), Expect = 1.9
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 15 QTEQQPPESLSGVVPAMHYGYVEGWFSKVAQASLGWL 51
          + EQ+   S +  +    YG+ +  +  V   S    
Sbjct: 10 EIEQKMDSSTNNGILKTKYGF-DNLYDTVISVSTSNG 45


>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A
           {Pichia angusta}
          Length = 633

 Score = 26.8 bits (58), Expect = 2.4
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 79  DIWFQSHQIFHVLVVSAAFVHYHGITEMAMYR 110
           DI F+   + + L +S   V Y         +
Sbjct: 266 DIHFKGRSVVYRLSLSEMTVPYGDPRAPFHRK 297


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 3.9
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 45/113 (39%)

Query: 20  PPESLSGVVPAMHYGYVEGWFSKVAQASLGWLLLMGVLYIIGGLIYALRVP--ERYFPGK 77
           PP+SL G+   +         S + Q+                     R+P  ER    K
Sbjct: 382 PPQSLYGLNLTLRKAKAP---SGLDQS---------------------RIPFSER----K 413

Query: 78  CDIWFQSHQIFHVLVVSAAFVHYH---GITEMAMYRLSSGGCEAPQ-----PV 122
                 S++ F  L V++ F H H     +++    L              PV
Sbjct: 414 LKF---SNR-F--LPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459



 Score = 25.8 bits (56), Expect = 5.1
 Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 34/102 (33%)

Query: 25  SGVVPAMHYGYVEGW--FSKVAQASLGWLLLMGVLYIIGGLIYALRVPERYFPGKCDIWF 82
            G+V A+     + W  F    + ++  L  +GV                          
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV-------------------------- 308

Query: 83  QSHQIFHVLVVSAAFVHY---HGITEMA-MYRLSSGGCEAPQ 120
           + ++ +    +  + +     +     + M  LS       Q
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPM--LSISNLTQEQ 348


>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine
           oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN;
           2.45A {Emericella nidulans}
          Length = 797

 Score = 25.7 bits (55), Expect = 4.9
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 79  DIWFQSHQIFHVLVVSAAFVHYHGITEMAMYR 110
           DI ++  ++ + L +  A  HY     +    
Sbjct: 368 DIKYKGQRVLYELGLQEALAHYAANDPVQSSV 399


>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein,
           topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A
           {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB:
           1rky_A* 1n9e_A*
          Length = 747

 Score = 25.7 bits (55), Expect = 6.0
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 79  DIWFQSHQIFHVLVVSAAFVHYHGITEMAMY 109
           DI F+  +I + L +      Y        +
Sbjct: 323 DITFKGERIVYELSLQELIAEYGSDDPFNQH 353


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,024,719
Number of extensions: 110712
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 13
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)