RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2033
         (124 letters)



>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast
           (Pichia pastoris) [TaxId: 4922]}
          Length = 460

 Score = 26.1 bits (57), Expect = 1.5
 Identities = 6/32 (18%), Positives = 11/32 (34%)

Query: 79  DIWFQSHQIFHVLVVSAAFVHYHGITEMAMYR 110
           DI F+  +I + L +      Y        + 
Sbjct: 48  DITFKGERIVYELSLQELIAEYGSDDPFNQHT 79


>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger
          domain-containing protein 1 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 56

 Score = 22.7 bits (49), Expect = 6.6
 Identities = 3/18 (16%), Positives = 9/18 (50%)

Query: 72 RYFPGKCDIWFQSHQIFH 89
           Y+   C ++ +  + +H
Sbjct: 2  EYYCSICHLFDKDKRQYH 19


>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 318

 Score = 23.7 bits (50), Expect = 9.7
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 67  LRVPERYFPGKCDIWFQSHQIFHVLVVSAAFVHYHGITEMAMYRLSSGGCEAPQP 121
           L + ER +    D+W     +  +   S       G TE     L S  C +  P
Sbjct: 192 LLLGERDYGPPIDLWGAGCIMAEMWTRSPIM---QGNTEQHQLALISQLCGSITP 243


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,683
Number of extensions: 20976
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 16
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (21.9 bits)