Query psy2035
Match_columns 141
No_of_seqs 119 out of 554
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 22:37:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fby_A COMP, cartilage oligome 99.9 6E-26 2E-30 203.9 8.6 95 1-98 237-340 (551)
2 1ux6_A Thrombospondin-1; extra 99.9 1.8E-25 6E-30 192.1 8.5 95 1-98 51-154 (350)
3 1yo8_A Thrombospondin-2; EGF, 99.9 9E-22 3.1E-26 178.2 8.9 94 1-97 326-428 (634)
4 1ux6_A Thrombospondin-1; extra 99.8 1.8E-19 6E-24 154.9 7.0 80 2-84 14-104 (350)
5 3fby_A COMP, cartilage oligome 99.7 2.8E-18 9.6E-23 154.4 7.7 78 1-81 81-190 (551)
6 1yo8_A Thrombospondin-2; EGF, 99.7 5.5E-17 1.9E-21 147.0 8.0 72 2-75 230-335 (634)
7 3lpe_B DNA-directed RNA polyme 24.2 37 0.0013 22.1 1.8 25 68-94 15-39 (59)
8 1ryq_A DNA-directed RNA polyme 20.0 37 0.0013 22.9 1.2 27 64-94 24-50 (69)
9 3p8b_A DNA-directed RNA polyme 18.9 44 0.0015 23.3 1.3 26 68-94 37-62 (81)
10 4ggo_A Trans-2-enoyl-COA reduc 14.8 77 0.0026 27.5 2.2 37 82-118 183-221 (401)
No 1
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}
Probab=99.92 E-value=6e-26 Score=203.92 Aligned_cols=95 Identities=38% Similarity=0.681 Sum_probs=90.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCCC
Q psy2035 1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAMY 71 (141)
Q Consensus 1 ~DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP~ 71 (141)
.||||.++|+.|+|+|+|||||+|+.|.|+|||++..|+||+++|+.|.|+|+|| |+|||+ |..|+||+
T Consensus 237 ~D~CP~~~n~~q~D~DgDGigD~cd~D~D~DGv~D~~D~CP~~pn~~q~D~DGDGigD~cd~D~D~DGv~--D~~D~CP~ 314 (551)
T 3fby_A 237 RDNCPTVPNSAQEDSDHDGQGDACDDDDDNDGVPDSRDNCRLVPNPGQEDADRDGVGDVCQDDFDADKVV--DKIDVCPE 314 (551)
T ss_dssp GCSSTTSCCTTCCCTTCSSSCTTTCSSSSCSSSCGGGCSSTTSCCTTCCCSSSSSSCSTTTTCTTCSSSC--GGGCSSTT
T ss_pred hhcCCCcCcccccCCCCCCCCCccCCCCCCCCCcCccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCC--CCCCCCCC
Confidence 3899999999999999999999999999999999999999999999999999987 999999 99999999
Q ss_pred CCCccccccccCCceEEeccCCcchhh
Q psy2035 72 VTKISTKMELRTYQMCVLTILSSTELT 98 (141)
Q Consensus 72 ~~~~~~~tDfr~yQ~V~Ldp~~~~~l~ 98 (141)
++++ ++|+||+||||+|+|++.+|+-
T Consensus 315 ~~~~-~~tdf~~~~~v~ldp~g~~~~~ 340 (551)
T 3fby_A 315 NAEV-TLTDFRAFQTVVLDPEGDAQID 340 (551)
T ss_dssp CSSC-CSCCCSSEEEEESSTTCSSCCC
T ss_pred CCCC-CccccccceeEecCCCCCCCCC
Confidence 9999 9999999999999999887743
No 2
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1
Probab=99.92 E-value=1.8e-25 Score=192.07 Aligned_cols=95 Identities=42% Similarity=0.711 Sum_probs=90.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCCC
Q psy2035 1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAMY 71 (141)
Q Consensus 1 ~DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP~ 71 (141)
.||||.++|+.|.|+|+||+||+||.|.|+|||+|..|+||+++|+.|.|+|+|| |+|||+ |..|+||.
T Consensus 51 ~D~CP~~~n~~q~DtD~DG~gD~cd~D~DgDGv~D~~D~CP~~pn~~q~D~DgDGigD~Cd~D~D~DGV~--D~~D~CP~ 128 (350)
T 1ux6_A 51 LDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVP--DIDDICPE 128 (350)
T ss_dssp GCSSTTSCCTTCCCTTCSSSCGGGCSSTTCSSSCGGGCTTTTSCCTTCCCTTCSSSCGGGSSCTTCSSSC--TTTCSSTT
T ss_pred ccCCCCCCCcccCccCCCCCccccccCCCCCCCCchhhcCCCCCCccccCCCCCCCCCCCCCCcCCCCCC--CcccCCCC
Confidence 3899999999999999999999999999999999999999999999999999887 999999 99999999
Q ss_pred CCCccccccccCCceEEeccCCcchhh
Q psy2035 72 VTKISTKMELRTYQMCVLTILSSTELT 98 (141)
Q Consensus 72 ~~~~~~~tDfr~yQ~V~Ldp~~~~~l~ 98 (141)
++++ ..++|++|++|.|+|.+.++|.
T Consensus 129 ~~~~-~~~D~~~~~~v~ld~~g~~~i~ 154 (350)
T 1ux6_A 129 NVDI-SETDFRRFQMIPLDPKGTSQND 154 (350)
T ss_dssp CTTC-SSCCTTCCEEEESCSSCCSSCC
T ss_pred CCcc-ccccccCceEEecCCCcccccc
Confidence 9999 9999999999999999877654
No 3
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=99.85 E-value=9e-22 Score=178.16 Aligned_cols=94 Identities=43% Similarity=0.782 Sum_probs=88.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCCC
Q psy2035 1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAMY 71 (141)
Q Consensus 1 ~DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP~ 71 (141)
.|+||.++|+.|.|+|+|||||+|+.|.|+|||++..|+||+++|+.|.|+|+|| |+|||+ |..|+||+
T Consensus 326 ~D~cp~~~~~~~~D~D~DG~~D~cd~D~D~DGv~D~~D~cp~~~~~~~~D~D~DG~~d~cd~D~D~DGi~--D~~D~cp~ 403 (634)
T 1yo8_A 326 QDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIP--DIDDVCPE 403 (634)
T ss_dssp GCSSTTSCCTTCCCTTCSSSCTTTCSCTTCSSSCGGGCTTTTSCCTTCCCTTCSSSCGGGSSCTTCSSSC--GGGCSSTT
T ss_pred cccCCCCCCccccccCCCCCcccCCCccCCCCCCCccccCCCCCCccccCcCCCCCCCCCCCCCCCCCCc--cccccCCC
Confidence 3799999999999999999999999999999999999999999999999999887 999999 99999999
Q ss_pred CCCccccccccCCceEEeccCCcchh
Q psy2035 72 VTKISTKMELRTYQMCVLTILSSTEL 97 (141)
Q Consensus 72 ~~~~~~~tDfr~yQ~V~Ldp~~~~~l 97 (141)
++++ .+++|+.|++|.|+|.+.++|
T Consensus 404 ~~~~-~~~d~~~~~~v~ld~~g~~~i 428 (634)
T 1yo8_A 404 NNAI-SETDFRNFQMVPLDPKGTTQI 428 (634)
T ss_dssp CTTC-CSCCCSSEEEEESSCCSSSCC
T ss_pred cCCc-ccccccccceEecCCCCCccc
Confidence 9999 999999999999998877664
No 4
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1
Probab=99.78 E-value=1.8e-19 Score=154.94 Aligned_cols=80 Identities=39% Similarity=0.557 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCC
Q psy2035 2 DNCPKVANPNQLDNDRDGKGDECDP--DLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAM 70 (141)
Q Consensus 2 DNCP~v~N~~Q~DtD~DGiGDaCD~--D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP 70 (141)
+|||.++||.|.|+|+|||||+||. |.|+|||+|..|+||+++|+.|.|+|+|| |+|||+ |..|+||
T Consensus 14 ~~cp~~~Np~q~D~D~DGvgD~cD~c~D~DgDGv~D~~D~CP~~~n~~q~DtD~DG~gD~cd~D~DgDGv~--D~~D~CP 91 (350)
T 1ux6_A 14 DNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIP--DDKDNCR 91 (350)
T ss_dssp HHSBTTTCCSSCCTTSSSBCTTTCCCCCTTCSSSCGGGCSSTTSCCTTCCCTTCSSSCGGGCSSTTCSSSC--GGGCTTT
T ss_pred HhCCCCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCcccCCCCCCCcccCccCCCCCccccccCCCCCCCC--chhhcCC
Confidence 5899999999999999999999996 99999999999999999999999999988 999999 9999999
Q ss_pred CCCCccccccccCC
Q psy2035 71 YVTKISTKMELRTY 84 (141)
Q Consensus 71 ~~~~~~~~tDfr~y 84 (141)
..++. .+.|..+.
T Consensus 92 ~~pn~-~q~D~DgD 104 (350)
T 1ux6_A 92 LVPNP-DQKDSDGD 104 (350)
T ss_dssp TSCCT-TCCCTTCS
T ss_pred CCCCc-cccCCCCC
Confidence 99997 66655443
No 5
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=154.37 Aligned_cols=78 Identities=42% Similarity=0.713 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------
Q psy2035 1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY------------------------- 55 (141)
Q Consensus 1 ~DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG------------------------- 55 (141)
+||||.++|+.|.|+|+|||||+|+.|.|+|||+|..|+||+++|+.|.|+|+||
T Consensus 81 ~DnC~~~~n~~Q~D~D~DGigD~Cd~D~DgDGi~D~~DnCp~~~n~~q~D~D~DGvGD~~DnCp~~~n~~q~DtDgDGiG 160 (551)
T 3fby_A 81 KDNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTDEDKWGDACDNCRSQKNDDQKDTDQDGRG 160 (551)
T ss_dssp CCSSSSSCCTTCCCTTCSSSCGGGCTTTTCSSSCGGGCSSSSSCCTTCCCTTCSSSCGGGCSSTTSCCTTCCCTTSSSSC
T ss_pred ccCCCCCCCccccccCCCCCCccCCCCCCCCCCCchhhcCCcccCcccccccCCcCCCccccCCCCCCCcccccCCCccc
Confidence 4899999999999999999999999999999999988888888776655554443
Q ss_pred -------CCCccccCCcCCCCCCCCCccccccc
Q psy2035 56 -------NADLILMRQVMAWAMYVTKISTKMEL 81 (141)
Q Consensus 56 -------DgDGV~~~D~~D~CP~~~~~~~~tDf 81 (141)
|+|||. |..|+||..++. .+.|.
T Consensus 161 D~cD~D~DgDGi~--d~~DnCP~~~n~-~q~Ds 190 (551)
T 3fby_A 161 DACDDDIDGDRIR--NQADNCPRVPNS-DQKDS 190 (551)
T ss_dssp GGGCSSTTCSSSC--STTCSSTTSCCT-TCCCT
T ss_pred cccccCCCCCCCC--CccccCCCcCCC-ccCCC
Confidence 666777 777777777665 44443
No 6
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=99.67 E-value=5.5e-17 Score=147.00 Aligned_cols=72 Identities=40% Similarity=0.769 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------------
Q psy2035 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY-------------------------- 55 (141)
Q Consensus 2 DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG-------------------------- 55 (141)
||||.++|+.|+|+|+|||||+||.|.|+|||+|..|+||+++|+.|.|+|+||
T Consensus 230 D~cp~~~n~~~~D~D~DG~~D~~d~D~D~DGi~d~~D~cp~~~n~~~~D~D~DGi~D~~D~cp~~~~~~~~D~D~DG~~D 309 (634)
T 1yo8_A 230 DNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGD 309 (634)
T ss_dssp CSSTTSCCTTCCCTTCSSSCGGGCSSTTSSSSCTTTCSSTTSCCTTCCCTTCSSSCGGGCSSTTSCCTTCCCTTSSSSCT
T ss_pred ccCCCCCCCCccCcCCCCCCCCCCCCCCCCCCCccccCCCCcCCCCCCCCCCCCCCcccccccccCCCcccccCCCCCCc
Confidence 799999999999999999999999999999999999999999988888777665
Q ss_pred --------CCCccccCCcCCCCCCCCCc
Q psy2035 56 --------NADLILMRQVMAWAMYVTKI 75 (141)
Q Consensus 56 --------DgDGV~~~D~~D~CP~~~~~ 75 (141)
|+|||. |..|+||..++.
T Consensus 310 ~cd~~~D~DgDGi~--d~~D~cp~~~~~ 335 (634)
T 1yo8_A 310 QCDNNEDIDDDGHQ--NNQDNCPYISNA 335 (634)
T ss_dssp TTCCCCCTTSSSSC--GGGCSSTTSCCT
T ss_pred cccCCCCcCcCCCc--cccccCCCCCCc
Confidence 567777 777888887765
No 7
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=24.22 E-value=37 Score=22.10 Aligned_cols=25 Identities=8% Similarity=-0.114 Sum_probs=16.9
Q ss_pred CCCCCCCccccccccCCceEEeccCCc
Q psy2035 68 WAMYVTKISTKMELRTYQMCVLTILSS 94 (141)
Q Consensus 68 ~CP~~~~~~~~tDfr~yQ~V~Ldp~~~ 94 (141)
.||+=... +..+|.+|-.| +||+.|
T Consensus 15 ~CpnC~~~-tt~~~~G~v~i-~dP~~S 39 (59)
T 3lpe_B 15 ICPICHSP-TSENWIGLLIV-INPEKS 39 (59)
T ss_dssp BCTTTCCB-EESCEECEEEE-SCTTTC
T ss_pred CCCCCCCC-ccCCEeeEEEE-eCCchh
Confidence 45554444 56678888655 999975
No 8
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=20.05 E-value=37 Score=22.92 Aligned_cols=27 Identities=7% Similarity=-0.114 Sum_probs=17.6
Q ss_pred CcCCCCCCCCCccccccccCCceEEeccCCc
Q psy2035 64 QVMAWAMYVTKISTKMELRTYQMCVLTILSS 94 (141)
Q Consensus 64 D~~D~CP~~~~~~~~tDfr~yQ~V~Ldp~~~ 94 (141)
+.+.+|+. ..+..+|.+|-.| |||+.|
T Consensus 24 ~~CPnC~s---~~tS~~w~G~ViI-~dPe~S 50 (69)
T 1ryq_A 24 DRCPVCGS---RDLSEEWFDLVII-VDVENS 50 (69)
T ss_dssp SSCTTTCC---CCEESCEEEEEEE-SCGGGC
T ss_pred CcCCCccC---CccCCccceEEEE-eCCchh
Confidence 44556663 3256778888655 899976
No 9
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=18.90 E-value=44 Score=23.30 Aligned_cols=26 Identities=8% Similarity=-0.019 Sum_probs=16.3
Q ss_pred CCCCCCCccccccccCCceEEeccCCc
Q psy2035 68 WAMYVTKISTKMELRTYQMCVLTILSS 94 (141)
Q Consensus 68 ~CP~~~~~~~~tDfr~yQ~V~Ldp~~~ 94 (141)
.||+=....+..+|.+|-. +|||+.|
T Consensus 37 ~CPnCgs~~~T~~w~G~Vi-I~dPe~S 62 (81)
T 3p8b_A 37 RCPVCGSRDLSEEWFDLVI-IVDVENS 62 (81)
T ss_dssp SCTTTCCCCEESCEEEEEE-ESCTTTC
T ss_pred CCCCCCCCccCCccceEEE-EeCChHh
Confidence 4555444424566888754 4899976
No 10
>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A
Probab=14.83 E-value=77 Score=27.49 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=28.8
Q ss_pred cCCceEEeccCCcchh--hhhhccccchhhHHHHhhccc
Q psy2035 82 RTYQMCVLTILSSTEL--TSGFMAGFSHSYWTQAQRNKK 118 (141)
Q Consensus 82 r~yQ~V~Ldp~~~~~l--~~~~~~~~~~~~~~~~~~~~~ 118 (141)
..+..+.|.|.+..|+ |.=.|+|=.+++|.+|+....
T Consensus 183 ~~i~~~~l~pat~eeie~T~~vMg~s~~s~w~~al~~a~ 221 (401)
T 4ggo_A 183 GELKEISAEPANDEEAAATVKVMGGEDWERWIKQLSKEG 221 (401)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHSSHHHHHHHHHHHHTT
T ss_pred cccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 4456677888877765 566799999999999998754
Done!