RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2035
         (141 letters)



>gnl|CDD|202235 pfam02412, TSP_3, Thrombospondin type 3 repeat.  The
          thrombospondin repeat is a short aspartate rich repeat
          which binds to calcium ions. The repeat was initially
          identified in thrombospondin proteins that contained 7
          of these repeats. The repeat lacks defined secondary
          structure.
          Length = 35

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 14 DNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQ 48
          D+D DG GD CD D D DG+ +  DNC    N +Q
Sbjct: 1  DSDSDGIGDACDNDFDNDGVPDLLDNCPYNANIDQ 35


>gnl|CDD|226430 COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal
           transduction mechanisms / Secondary metabolites
           biosynthesis, transport, and catabolism].
          Length = 209

 Score = 28.1 bits (63), Expect = 1.4
 Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 48  QDDSDAHYNADLILMRQVMAWAMY--VTKISTKMELRTYQM 86
           +  +     A   L   ++ +A+   +T I T  +    ++
Sbjct: 112 RRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERI 152


>gnl|CDD|213389 cd12146, STING_C, C-terminal domain of STING.  STING (stimulator of
           interferon genes, also known as MITA, ERIS, MPYS and
           TMEM173) is a master regulator that mediates cytokine
           production in response to microbial invasion by directly
           sensing bacterial secondary messengers such as the
           cyclic dinucleotide bis-(3'-5')-cyclic dimeric GMP
           (c-di-GMP) and leading to the activation of IFN
           regulatory factor 3 (IRF3) through TANK-binding kinase 1
           (TBK1) stimulation. STING is also a signaling adaptor in
           the IFN response to cytosolic DNA. This detection of
           foreign materials is the first step to a successful
           immune responses. STING is localized in the ER and
           comprised of an predicted N-terminal transmembrane
           region and a C-terminal c-di-GMP binding domain.
          Length = 181

 Score = 27.6 bits (62), Expect = 2.0
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 38  DNCRLIYNPNQDDSDAHYNADLIL--MRQ 64
               LIY  + D+ D+   + +IL  +RQ
Sbjct: 151 GLYELIYYEDFDEDDSVDLSQVILQHLRQ 179


>gnl|CDD|226857 COG4449, COG4449, Predicted protease of the Abi (CAAX) family
           [General function prediction only].
          Length = 827

 Score = 27.3 bits (60), Expect = 3.8
 Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)

Query: 72  VTKISTKMELRTYQMCVLTIL--SSTELTSGFMAGFSHSYWTQA 113
           +  + T    R +  C + +    +     GF  G  H   TQ 
Sbjct: 660 LASLVTLPSARDWLFCGIVVALYLAIAAALGFTTGLLHWTPTQP 703


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.312    0.127    0.380 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,578,516
Number of extensions: 537525
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 9
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.6 bits)